miRTarBase - #MIRT110644


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pre-miRNA Information
pre-miRNA hsa-mir-4476   
Genomic Coordinates chr9: 36893462 - 36893531
Description Homo sapiens miR-4476 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4476
Sequence 45| CAGGAAGGAUUUAGGGACAGGC |66
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 6 9 - 36893482 29233923 MiREDiBase
A-to-I 9 9 - 36893479 29233923 MiREDiBase
A-to-I 13 9 - 36893475 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs978640498 3 dbSNP
rs1019792440 6 dbSNP
rs1008364367 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ARID5B   
Synonyms DESRT, MRF-2, MRF2
Description AT-rich interaction domain 5B
Transcript NM_032199   
Expression
Putative miRNA Targets on ARID5B
3'UTR of ARID5B
(miRNA target sites are highlighted)		 
>ARID5B|NM_032199|3'UTR
   1 GCTCAGCTCTGCCCAGCAGTCCAAAGCGGCATGGCCAACAGAGCTTCACTCCTTACCCAGGAGTGCTGGCTTATAGAGTT
  81 AGAAGTCAGTATTTCTTCTAATCTGAGGCTATGATCAGTCCCAGCTGTAGGGGCCCAGAGGGGAGGTGAACATGCCTGAT
 161 TTTTGTGGGACAACTCTAGCCCACAAACTGACTGGCTGGTGAGTCTTGACTCCCTTCCAACACAGATGCCCAGGCACCTC
 241 CAGATCATTCACTTCGCACGTGGGCCTTGTGAAGGGATTTGTGAATATCCAGGAAGAACTTAGAGGACCCCATCTGAGTT
 321 CGGATGGTCAGGAAACAATCTGGGCAAAAAAGAGGCAGGCATTTCAAAGGAAGGGGCAAGGAAGACTGGCAAACAGATGG
 401 CAAGGGATGCCCCTCTTTTTCATAAAACTCTCCAAGGTTCAATCAATGCAATGTATAGTGAAACTTCAATAGATCTTTCA
 481 TTTTGACACTATTAAACAATCCAGAGAAGTAAACACTGTTAAATTGACTGTATATATTTGCTTCTTAAAACTACCTGTAT
 561 CACTGTTTGCTCACCTAATTTATATACAGGTAGTTCCATTTTCTCCCAGTTCCTTCTCGTCTTTTTTTTTTTTTTTTTTT
 641 TTTTTTTTATTAAATGGTATTGCTTTTGTTTGCAGGTCTTTTTGTTTTTGTTTTGTTTTTGAGGCTGACTGACTGTCCTA
 721 GTTGTTGTGTGTTTGTAATTTTTCCACATCTTATTTTGAGCAGCTTTGGGTGGTAAAGTTATTGTTTACAAATTGAAGCA
 801 ACTGATTCTAGTGGAACAAATGAAAAAGAAACAGTCAAGCACACAATAGTGCAAAGAACGTTCCTTTGTAGATCCGCAAC
 881 TTAAGGATTTTGTTCCTCATAAATGGCATAGTTGAAAGAGCTTATACACTGCTTACCCAGCCAAATGCTTTGCTTTGAAG
 961 TATTGGGTTCTGTGAAAATATTGAGCATTGTACTTACCTTATCTAGGCTGTGAAACTGTCCTACATACCAGAGAATCATA
1041 AAAACAAAAACCTCACTGGCAGCAAGCTGCCGAATAACAACAGAGTCTAGAGGACATATTTGTGGGCTGCACAGATATTT
1121 TAGGAATTTCAGAAATTAGAACAGGAGCCAAAATGATTTACATTGGCGTTGGCACTGATTCCTTTAAATGGTCTGGGAAA
1201 GGGGGTTGGGAAGAGGATGGAGCTCAACTGGCCAGAAGAGGAGCAGCTGCAGTCCTGATAGCTTCTCTAGCCTCGGTCTT
1281 TTGAGTGATAAGTAGTCATGTTGTTTTCATCCAGTTGGTTTCTTGTCATTCCCAAGAAGAATCTCCCAGGCCACATCTTT
1361 GGGGATAACTGACATACTGGATTAGCCTTTTCAAAAGAAAAGTCATCCTATTTGGTTTTATGGGGTGTGAGTTTTGTGTG
1441 TACACACACAGAAACATGTAAGGTGGTTTGGGTCATGTTTTTAACCACCTGGCAATACAGTCCACTTTCTGGTTTCTTTT
1521 ATTGTGGGAAGTAAATGGTCAAGCTGCTCAGGCAGTGAAAAGATGTGGAGAATGTCCGTTGTCATTCTTGCCACTGTATT
1601 CCATTTGCTACCGAGATATAACATTAAGGTGGACACATTTTCTAACTGTATTAATTAAAAGTCAATGGATACAGAGAGTG
1681 GATTTTCTCCCCAAGTCCCATCCCTGCTGAAGACCGCTTGGATGAACTCCCCAACCCACTGTGCCCCTCCCGCAACACTA
1761 CCAGTAGACTTTAGAACCATAGTTAACTAAGTCTTTTACCTCTGAGATACTTAATTCTGGGAAAATTGGTGACAATTTTC
1841 AACTTCTAAATAGGTAACTCGACTGCAAAATAATCAAAACTGATAACAATGAAACTGCGGCTCTTAAACAAAGCCATGCA
1921 TGCCGTGCATTTGTATTGAAATGTCTCCATGATATGAAGCCAAATATTCAATGTAACATACTTAATATCCAAAGGTGGAA
2001 ACAAAAGAATGTAGAGATCCAGTGTTAAGAGTTCCATTTGCTTCAATTAATTATTTACCTTCCTGTGGAATAATATATAT
2081 ATATATATTTAATAGAACCATAGATAGACTAGTAGAATTTAGATTATAAATGTGTGAGTGCAGATTATCCTGCTATTGCA
2161 CAAGCTAGAGGGGGGAAAAATCTCAATTCCAGCTGGCAAGATGCTAGCCAGGACACATATAAGAAAGTTGCACTAGATTG
2241 AATGGTCACAGAATCGGAGGACATGGAAGAAAAAGGAAACTTCGGTGGTTCTGCAGCAGACATGGGCTAGGTCATATGTG
2321 GTTTCTATGAGTTCGTGTCTCAAAAAAAAAAGGAGGGGGGGCATCTGTCCCCGGTGGAGCTCACCTATTTGGAATATGGG
2401 GCATTTGTTTTTTCCACTGCAATGATTTCAGTCTGGTTTCATCATGTTGGAATTCGATCACACCATTTTCAAACAATGTT
2481 AACATAGTCCAGCTTTTGTTTTTCTCATCTCTTCTGAGAGGAGACTCACTGTTTCTGTCTGAGGAAGCTCATACCCTCGG
2561 CAAAACATCAGGACAAATAAAGAGAAATGGGGGTACGCATTCCCAACAGAAGCAGTGTGTTATTTGTTTTAAAACTCTGA
2641 ACAGAGATCTTGGAAATCTTTCAAAAAGACCATTGAATTCTTCATTGGCTGAGAACGACGTTTTAAAATGTCTTAAATAA
2721 GGCTTTGTTTGCATTGTTTGAGTTCAAGGGGCCTTATTATTGAATGGAATTGCACAAGCCTTTCTTTGTGCAATCAAACC
2801 ATTGTTATTGGTAGTTCTGTAAAGGAAACTGTGGAATCGAATTGGCAGTGGAGTCATAAATCTATTTACTGAGTGTGGCT
2881 TCCAAGAAATGTTGCAATTCAAAATGCACTAAGTCTGTGATTTATTGGAGATTTGGAGATTCTAAATAATATTTTTAAAA
2961 AACTTCCATGCAACTTCTGGTTTAATGTTTGGCAACTCCACATGATAAAAAAATAAAAACAGCCCAACCGAGTTTCGGAA
3041 TTAAGTATTCTTCTAGTAAGTGATTCAAACTTGTAATATTTGCCACAGGACTGACTTATTTATTTACTAGCTAGAAGCTC
3121 TTAAGTTCACTTGTTTATCAGGGCATATACAGAAGGGTTTGTTAAAACTCGATGTTAACTTTACAACTTTCTGACCTGGT
3201 GCATGAATTCTCAAGTACTGTATTTCACTGTGTTGGTGTGTCTGATGGAAATTTCGAGGTGGTCCCACAAAAATATTTTA
3281 TGTAGTGTGCCTTCAAAGAGAACCATTTATTTCTCTTCACTTATCGTCCCACAAAGTCACATTTGGTGGTGGTCAGCCAA
3361 GTCGCATCTGGTCTAGTTTTACTCTTGTCCCAATTTTAAAGAGAAATGGGAATGAGTTTGCCCTGGTGAGACCCATACCA
3441 TTGCAATGATTATCTTGAGCACTTAAAGTCCAGTGTTGGCTGTTAGTGTATTTGATATTCTGCCTGTCTCCTCATGGTTG
3521 AAATATGTCTGAAGAATAGCAGCATAATCTCTTGGCTGTTTATACTTTTTTAAACTTTCCTGTGTTGTAAATATTGTATA
3601 CTTTTGGTGATTCCAGCTATGTAACCTCTATGCTCTGTAAGGTGATTATTTGTATATAGCAACATGGCCCAGTGATATTA
3681 TATAGTTTCCCAATGGAGAGGTTATTGAGTAACCTTTGCATTAGTTTAAACACTACCAGAAGAATGCTGAGCCAACTATA
3761 AACACTCAATTTTGTATGTTTTCCAAATTGTACTTATTACTGCTTTTGATACTGTATTACGTGCCAATAGTTTCCCAATC
3841 ACATAGCAGGCAAGAGATATTTTGTACTTTTTGATCCACTGTAATATTTAATAAAAAATGTTACTATCTGTTTCCTTTAA
3921 AAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cgGAC-AGG--GAUU--UA---GGAAGGAc 5'
            :|| |:|  :|||  ||   ||||||| 
Target 5' atTTGCTTCAATTAATTATTTACCTTCCTg 3'
 2036 - 2065 148.00 -15.10
2 
miRNA  3' cgGACAGGGAUUUAGGAAGGAc 5'
            || |:::|||| |:||||| 
Target 5' taCT-TTTTTAAA-CTTTCCTg 3'
 3563 - 3582 146.00 -14.70
3 
miRNA  3' cggaCAGGGAUUUA-GGAAGGac 5'
              || |:|:| | ||||||  
Target 5' gtgaGT-CTTGACTCCCTTCCaa 3'
 199 - 220 133.00 -12.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30163092 5 COSMIC
COSN30483198 15 COSMIC
COSN30107043 29 COSMIC
COSN30155929 42 COSMIC
COSN30538607 64 COSMIC
COSN30504071 82 COSMIC
COSN28803392 177 COSMIC
COSN30168477 226 COSMIC
COSN20205728 297 COSMIC
COSN1496791 319 COSMIC
COSN28198140 344 COSMIC
COSN26678022 410 COSMIC
COSN5289129 452 COSMIC
COSN26604178 470 COSMIC
COSN31537899 491 COSMIC
COSN18760762 650 COSMIC
COSN19662642 650 COSMIC
COSN31550619 659 COSMIC
COSN19664011 669 COSMIC
COSN31519986 680 COSMIC
COSN19657486 685 COSMIC
COSN19660570 691 COSMIC
COSN19660576 696 COSMIC
COSN31547627 743 COSMIC
COSN16531727 847 COSMIC
COSN1496792 879 COSMIC
COSN25977928 886 COSMIC
COSN31549726 886 COSMIC
COSN31609588 958 COSMIC
COSN31567997 964 COSMIC
COSN17386151 1004 COSMIC
COSN25738329 1518 COSMIC
COSN16544397 1622 COSMIC
COSN30176261 1823 COSMIC
COSN31534724 1827 COSMIC
COSN17419242 2005 COSMIC
COSN24303477 2007 COSMIC
COSN30544183 2041 COSMIC
COSN28736998 2073 COSMIC
COSN23224799 2088 COSMIC
COSN30541954 2089 COSMIC
COSN28768375 2196 COSMIC
COSN26717579 2220 COSMIC
COSN10070896 2352 COSMIC
COSN27590793 2352 COSMIC
COSN29023413 2352 COSMIC
COSN20949456 2354 COSMIC
COSN16941677 2397 COSMIC
COSN2497945 2478 COSMIC
COSN31543485 2480 COSMIC
COSN26585397 2488 COSMIC
COSN17181563 2508 COSMIC
COSN26555249 2572 COSMIC
COSN26465104 2689 COSMIC
COSN24303333 2701 COSMIC
COSN27775647 2737 COSMIC
COSN31557510 2741 COSMIC
COSN8716005 2852 COSMIC
COSN10070897 2869 COSMIC
COSN30251463 3079 COSMIC
COSN23814570 3094 COSMIC
COSN31516302 3110 COSMIC
COSN31485611 3256 COSMIC
COSN29407300 3305 COSMIC
COSN1496793 3326 COSMIC
COSN31578776 3517 COSMIC
COSN31590127 3557 COSMIC
COSN31546388 3647 COSMIC
COSN30543783 3762 COSMIC
COSN26554139 3822 COSMIC
rs2393726 1619 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1280550061 1 dbSNP
rs1195531250 6 dbSNP
rs1263877655 12 dbSNP
rs1477425574 13 dbSNP
rs1366883289 15 dbSNP
rs764419084 18 dbSNP
rs989020742 20 dbSNP
rs1378806330 21 dbSNP
rs201720788 28 dbSNP
rs545433664 29 dbSNP
rs750461069 32 dbSNP
rs1413379609 33 dbSNP
rs758396901 36 dbSNP
rs780249350 38 dbSNP
rs748069451 45 dbSNP
rs1293537519 49 dbSNP
rs201215951 50 dbSNP
rs777665946 51 dbSNP
rs911202288 57 dbSNP
rs1463218385 60 dbSNP
rs527815399 71 dbSNP
rs1291247448 75 dbSNP
rs1393853054 75 dbSNP
rs1389346752 79 dbSNP
rs976796336 83 dbSNP
rs543105897 96 dbSNP
rs747820088 105 dbSNP
rs1039505210 106 dbSNP
rs929790789 117 dbSNP
rs1304863301 121 dbSNP
rs1338423739 127 dbSNP
rs1238821265 131 dbSNP
rs921232138 136 dbSNP
rs769616913 142 dbSNP
rs1346922189 143 dbSNP
rs888290629 144 dbSNP
rs560966675 146 dbSNP
rs947972215 156 dbSNP
rs931226389 157 dbSNP
rs41307563 158 dbSNP
rs549665609 164 dbSNP
rs886788399 166 dbSNP
rs1278625136 173 dbSNP
rs571541860 174 dbSNP
rs1380596325 176 dbSNP
rs4948506 177 dbSNP
rs906166764 180 dbSNP
rs1003245550 182 dbSNP
rs1303619616 187 dbSNP
rs1447528445 187 dbSNP
rs1030754853 193 dbSNP
rs1374036429 195 dbSNP
rs41305707 199 dbSNP
rs1431015093 200 dbSNP
rs1370282829 201 dbSNP
rs1010398947 205 dbSNP
rs895554338 210 dbSNP
rs533547721 212 dbSNP
rs565329664 215 dbSNP
rs1357121530 224 dbSNP
rs1255150212 226 dbSNP
rs768016514 229 dbSNP
rs774730849 235 dbSNP
rs1021768685 247 dbSNP
rs1250657886 256 dbSNP
rs1225393496 257 dbSNP
rs1323600689 258 dbSNP
rs969312082 260 dbSNP
rs1224828202 261 dbSNP
rs1313449865 262 dbSNP
rs576967734 263 dbSNP
rs1227978122 265 dbSNP
rs1261569716 273 dbSNP
rs985693143 286 dbSNP
rs1310312749 287 dbSNP
rs1018975218 288 dbSNP
rs1488285664 292 dbSNP
rs905318711 298 dbSNP
rs1370536055 300 dbSNP
rs1296983538 303 dbSNP
rs1265849790 304 dbSNP
rs1459862673 311 dbSNP
rs965402519 313 dbSNP
rs1001531696 316 dbSNP
rs1422470448 320 dbSNP
rs1162204495 322 dbSNP
rs760529897 323 dbSNP
rs1415201810 327 dbSNP
rs1184123686 333 dbSNP
rs191797901 337 dbSNP
rs1249491331 339 dbSNP
rs1489391771 340 dbSNP
rs1266174377 360 dbSNP
rs538005131 363 dbSNP
rs976742478 372 dbSNP
rs1367545263 375 dbSNP
rs1457910069 377 dbSNP
rs554654611 384 dbSNP
rs956937117 385 dbSNP
rs988091509 395 dbSNP
rs569611600 399 dbSNP
rs1335580099 401 dbSNP
rs1165004577 407 dbSNP
rs1305224359 407 dbSNP
rs1358529969 414 dbSNP
rs776007462 417 dbSNP
rs965432911 423 dbSNP
rs984188504 431 dbSNP
rs975430893 438 dbSNP
rs921105538 441 dbSNP
rs761090020 443 dbSNP
rs1179384733 465 dbSNP
rs1434907773 475 dbSNP
rs182829775 476 dbSNP
rs1193143399 481 dbSNP
rs1044982190 498 dbSNP
rs1394090799 502 dbSNP
rs906483421 504 dbSNP
rs534696602 507 dbSNP
rs1350152799 508 dbSNP
rs1259399935 509 dbSNP
rs1312203501 514 dbSNP
rs1341295904 525 dbSNP
rs1303280643 529 dbSNP
rs1248251202 530 dbSNP
rs1284038045 535 dbSNP
rs938981411 553 dbSNP
rs1368182620 559 dbSNP
rs1321908227 564 dbSNP
rs1052129875 566 dbSNP
rs556453421 567 dbSNP
rs1010639273 583 dbSNP
rs1467371641 591 dbSNP
rs1377940502 593 dbSNP
rs1172970892 599 dbSNP
rs948452548 609 dbSNP
rs1482449112 613 dbSNP
rs764012446 614 dbSNP
rs1181646493 619 dbSNP
rs1202599966 620 dbSNP
rs1259874128 620 dbSNP
rs904656668 620 dbSNP
rs1255042293 621 dbSNP
rs1346174984 621 dbSNP
rs1169348679 622 dbSNP
rs1189911540 622 dbSNP
rs1209177787 622 dbSNP
rs1232741604 622 dbSNP
rs1257334176 622 dbSNP
rs1311984433 622 dbSNP
rs1315814931 622 dbSNP
rs1348715884 622 dbSNP
rs1371355230 622 dbSNP
rs1375843637 622 dbSNP
rs1391941919 622 dbSNP
rs1397378169 622 dbSNP
rs1432848926 622 dbSNP
rs1475111884 622 dbSNP
rs1484347691 622 dbSNP
rs200942179 622 dbSNP
rs57902062 622 dbSNP
rs60356153 622 dbSNP
rs12768783 623 dbSNP
rs965626253 627 dbSNP
rs1214447978 629 dbSNP
rs1184880226 632 dbSNP
rs1338218813 632 dbSNP
rs1377990688 637 dbSNP
rs976982586 644 dbSNP
rs1025575854 647 dbSNP
rs1312120932 647 dbSNP
rs1372382178 648 dbSNP
rs951385353 648 dbSNP
rs1409258346 649 dbSNP
rs75669328 649 dbSNP
rs1265754829 650 dbSNP
rs1409363074 651 dbSNP
rs1159124056 653 dbSNP
rs1346906021 654 dbSNP
rs777946491 654 dbSNP
rs1464295358 655 dbSNP
rs1302111324 657 dbSNP
rs1380138564 658 dbSNP
rs1454821456 660 dbSNP
rs1307391903 662 dbSNP
rs1376193055 663 dbSNP
rs1475698360 664 dbSNP
rs1240985008 669 dbSNP
rs1044115313 672 dbSNP
rs143707580 675 dbSNP
rs1252941684 676 dbSNP
rs1001015793 677 dbSNP
rs1033038773 678 dbSNP
rs1209838538 679 dbSNP
rs892712195 683 dbSNP
rs1257004147 684 dbSNP
rs1461463564 685 dbSNP
rs1205127832 691 dbSNP
rs1236000454 696 dbSNP
rs1352129197 701 dbSNP
rs1279846152 702 dbSNP
rs1438476746 705 dbSNP
rs1177275234 709 dbSNP
rs1410058214 711 dbSNP
rs1009565317 713 dbSNP
rs1431421169 722 dbSNP
rs909990696 723 dbSNP
rs1175057075 727 dbSNP
rs545701212 750 dbSNP
rs1019578503 755 dbSNP
rs981037619 762 dbSNP
rs965315811 768 dbSNP
rs1409191883 774 dbSNP
rs927889536 783 dbSNP
rs1028385913 786 dbSNP
rs554248392 793 dbSNP
rs1200431509 804 dbSNP
rs147227582 807 dbSNP
rs1300029297 818 dbSNP
rs908488715 821 dbSNP
rs187429419 822 dbSNP
rs1211439543 823 dbSNP
rs1052372104 835 dbSNP
rs939915711 839 dbSNP
rs1284759873 842 dbSNP
rs867823936 847 dbSNP
rs561440924 848 dbSNP
rs1366083755 852 dbSNP
rs1371163272 860 dbSNP
rs1276570383 861 dbSNP
rs34526141 863 dbSNP
rs111481833 867 dbSNP
rs1370347073 868 dbSNP
rs1323907271 869 dbSNP
rs946374563 876 dbSNP
rs1043479342 877 dbSNP
rs1217196244 879 dbSNP
rs753916140 880 dbSNP
rs12413084 888 dbSNP
rs139686484 899 dbSNP
rs761856054 904 dbSNP
rs564713252 906 dbSNP
rs532315988 907 dbSNP
rs1457091856 908 dbSNP
rs1040245344 910 dbSNP
rs936870678 921 dbSNP
rs868355719 924 dbSNP
rs1191187245 925 dbSNP
rs1234157027 937 dbSNP
rs547289183 939 dbSNP
rs901368781 949 dbSNP
rs1053956752 953 dbSNP
rs892598285 954 dbSNP
rs998352844 965 dbSNP
rs1280393621 968 dbSNP
rs565594485 969 dbSNP
rs1429925765 973 dbSNP
rs1347041472 982 dbSNP
rs951373921 986 dbSNP
rs574389514 988 dbSNP
rs1168357090 992 dbSNP
rs1423168831 996 dbSNP
rs541457658 999 dbSNP
rs1330939874 1002 dbSNP
rs1006006062 1011 dbSNP
rs1313805507 1015 dbSNP
rs1017002978 1027 dbSNP
rs1434699567 1032 dbSNP
rs3802669 1033 dbSNP
rs980893190 1041 dbSNP
rs1028856134 1052 dbSNP
rs1429803511 1053 dbSNP
rs1419561383 1056 dbSNP
rs1185581200 1069 dbSNP
rs1435874801 1072 dbSNP
rs547843218 1073 dbSNP
rs558315268 1075 dbSNP
rs927761350 1080 dbSNP
rs1005835815 1082 dbSNP
rs1347940394 1093 dbSNP
rs371240123 1097 dbSNP
rs750665851 1103 dbSNP
rs1213037581 1108 dbSNP
rs1316893146 1118 dbSNP
rs1214758816 1119 dbSNP
rs536726289 1133 dbSNP
rs1274707458 1136 dbSNP
rs1414532486 1148 dbSNP
rs550384253 1149 dbSNP
rs992755035 1155 dbSNP
rs917146271 1164 dbSNP
rs1169119234 1168 dbSNP
rs571859650 1169 dbSNP
rs1419533808 1170 dbSNP
rs1188451035 1171 dbSNP
rs913855466 1175 dbSNP
rs946383861 1178 dbSNP
rs1262256299 1183 dbSNP
rs758135942 1184 dbSNP
rs1250884053 1185 dbSNP
rs1053249392 1189 dbSNP
rs914084915 1191 dbSNP
rs1169821090 1192 dbSNP
rs1232861235 1193 dbSNP
rs1353964481 1194 dbSNP
rs910229661 1202 dbSNP
rs765107649 1204 dbSNP
rs1392539047 1205 dbSNP
rs1041306240 1206 dbSNP
rs1297145428 1207 dbSNP
rs1404768029 1211 dbSNP
rs1164367243 1214 dbSNP
rs1395970321 1228 dbSNP
rs1367982966 1235 dbSNP
rs901421239 1243 dbSNP
rs779721673 1244 dbSNP
rs1040125872 1253 dbSNP
rs55913611 1257 dbSNP
rs535861646 1271 dbSNP
rs1175602807 1272 dbSNP
rs1327345415 1273 dbSNP
rs149783765 1275 dbSNP
rs145735372 1276 dbSNP
rs1376604710 1279 dbSNP
rs554636672 1288 dbSNP
rs1017320316 1289 dbSNP
rs1240171959 1292 dbSNP
rs1316895059 1296 dbSNP
rs1305520716 1300 dbSNP
rs1361465365 1302 dbSNP
rs1372543307 1304 dbSNP
rs576507373 1314 dbSNP
rs1439776465 1327 dbSNP
rs1391824900 1335 dbSNP
rs780728057 1336 dbSNP
rs969962391 1340 dbSNP
rs578160958 1342 dbSNP
rs747698638 1349 dbSNP
rs969436358 1351 dbSNP
rs543533300 1355 dbSNP
rs1156846467 1363 dbSNP
rs1455492922 1373 dbSNP
rs1253773800 1380 dbSNP
rs192376022 1385 dbSNP
rs769457118 1387 dbSNP
rs1205892367 1394 dbSNP
rs1485763602 1402 dbSNP
rs757908905 1405 dbSNP
rs374427614 1411 dbSNP
rs115939814 1419 dbSNP
rs1349213411 1429 dbSNP
rs1303587771 1436 dbSNP
rs1447304025 1440 dbSNP
rs1195062990 1447 dbSNP
rs960522146 1452 dbSNP
rs772497693 1457 dbSNP
rs1232883362 1461 dbSNP
rs1020867850 1464 dbSNP
rs988597515 1479 dbSNP
rs1382376408 1489 dbSNP
rs968339059 1500 dbSNP
rs1383994262 1503 dbSNP
rs979389026 1508 dbSNP
rs1286889953 1512 dbSNP
rs185560801 1523 dbSNP
rs1395579718 1531 dbSNP
rs1235940433 1538 dbSNP
rs1173149374 1550 dbSNP
rs1452685576 1552 dbSNP
rs943057135 1554 dbSNP
rs945579001 1578 dbSNP
rs75299153 1579 dbSNP
rs922895752 1586 dbSNP
rs1437932237 1587 dbSNP
rs932919810 1591 dbSNP
rs144368866 1596 dbSNP
rs1342270494 1598 dbSNP
rs1386325655 1604 dbSNP
rs1402804392 1610 dbSNP
rs41304633 1613 dbSNP
rs189285631 1614 dbSNP
rs2393726 1619 dbSNP
rs530671677 1620 dbSNP
rs769084750 1621 dbSNP
rs1451515833 1624 dbSNP
rs1037140469 1635 dbSNP
rs146613970 1639 dbSNP
rs777227201 1651 dbSNP
rs1038621948 1657 dbSNP
rs1398741930 1660 dbSNP
rs761832874 1662 dbSNP
rs1475247189 1663 dbSNP
rs905161029 1666 dbSNP
rs1002245859 1673 dbSNP
rs1190571202 1676 dbSNP
rs1035101846 1679 dbSNP
rs1014137938 1688 dbSNP
rs1186442241 1691 dbSNP
rs1440049040 1703 dbSNP
rs755305467 1716 dbSNP
rs1009666139 1717 dbSNP
rs1351390459 1719 dbSNP
rs368745686 1720 dbSNP
rs1234706164 1737 dbSNP
rs1355858492 1747 dbSNP
rs967907932 1752 dbSNP
rs979723324 1753 dbSNP
rs765315413 1754 dbSNP
rs1337458486 1757 dbSNP
rs1329663157 1760 dbSNP
rs1409426361 1777 dbSNP
rs1398137777 1778 dbSNP
rs1276297214 1781 dbSNP
rs1462112764 1782 dbSNP
rs1161827101 1783 dbSNP
rs1417671379 1783 dbSNP
rs1471467383 1785 dbSNP
rs1442024130 1788 dbSNP
rs1233944133 1792 dbSNP
rs1181659082 1794 dbSNP
rs1001473956 1798 dbSNP
rs1017555571 1807 dbSNP
rs1235760281 1808 dbSNP
rs1204498087 1813 dbSNP
rs1245218385 1819 dbSNP
rs1215188800 1831 dbSNP
rs1335058368 1835 dbSNP
rs1272388817 1842 dbSNP
rs964728034 1843 dbSNP
rs1033319332 1849 dbSNP
rs1280083127 1852 dbSNP
rs1441337748 1858 dbSNP
rs768320220 1861 dbSNP
rs957084797 1862 dbSNP
rs781658899 1876 dbSNP
rs988871531 1884 dbSNP
rs923011964 1889 dbSNP
rs929029804 1890 dbSNP
rs1364867526 1893 dbSNP
rs983183011 1897 dbSNP
rs1020026779 1899 dbSNP
rs539243810 1900 dbSNP
rs941548704 1904 dbSNP
rs1194951049 1906 dbSNP
rs1468675122 1907 dbSNP
rs1251960323 1909 dbSNP
rs1218858013 1919 dbSNP
rs576110272 1923 dbSNP
rs1171154451 1925 dbSNP
rs975764018 1926 dbSNP
rs1284608075 1944 dbSNP
rs1223209487 1950 dbSNP
rs1351418120 1968 dbSNP
rs1305774469 1971 dbSNP
rs1039020639 1972 dbSNP
rs1370276121 1974 dbSNP
rs1292036078 1978 dbSNP
rs905485483 1979 dbSNP
rs1346175750 1980 dbSNP
rs1318056130 1981 dbSNP
rs937980109 1991 dbSNP
rs1418478932 1998 dbSNP
rs1377765338 2001 dbSNP
rs1056449042 2003 dbSNP
rs192270286 2008 dbSNP
rs985747213 2011 dbSNP
rs910103944 2019 dbSNP
rs1189101253 2024 dbSNP
rs1037024223 2027 dbSNP
rs941397474 2027 dbSNP
rs1215591014 2029 dbSNP
rs1487298073 2030 dbSNP
rs868242977 2047 dbSNP
rs1407850310 2062 dbSNP
rs1347250963 2066 dbSNP
rs897120845 2071 dbSNP
rs146309746 2073 dbSNP
rs538212850 2073 dbSNP
rs566395607 2073 dbSNP
rs1357698280 2074 dbSNP
rs770299164 2081 dbSNP
rs1314050254 2083 dbSNP
rs1434567761 2088 dbSNP
rs1032959100 2091 dbSNP
rs1173341902 2097 dbSNP
rs1000744098 2110 dbSNP
rs1411346287 2118 dbSNP
rs1419766872 2122 dbSNP
rs1327665898 2131 dbSNP
rs1192425364 2139 dbSNP
rs893035681 2141 dbSNP
rs1259278991 2146 dbSNP
rs1336252371 2148 dbSNP
rs536520016 2158 dbSNP
rs1019908761 2159 dbSNP
rs554978838 2170 dbSNP
rs965648536 2170 dbSNP
rs1273033462 2175 dbSNP
rs1216985148 2176 dbSNP
rs536857382 2176 dbSNP
rs964688044 2176 dbSNP
rs576358503 2177 dbSNP
rs1029135814 2178 dbSNP
rs1414776588 2179 dbSNP
rs997403280 2180 dbSNP
rs141365668 2181 dbSNP
rs1443770517 2182 dbSNP
rs1456656358 2184 dbSNP
rs1198066404 2192 dbSNP
rs1169528923 2193 dbSNP
rs58516574 2196 dbSNP
rs910169046 2203 dbSNP
rs950391149 2206 dbSNP
rs972947691 2212 dbSNP
rs576894756 2213 dbSNP
rs1253965730 2218 dbSNP
rs1178826442 2220 dbSNP
rs763230646 2228 dbSNP
rs1237571891 2233 dbSNP
rs184604912 2250 dbSNP
rs1272178692 2252 dbSNP
rs1337208008 2254 dbSNP
rs1480928811 2256 dbSNP
rs963202784 2257 dbSNP
rs1320242357 2262 dbSNP
rs1309824706 2264 dbSNP
rs1179115427 2273 dbSNP
rs1430953640 2274 dbSNP
rs1463776797 2276 dbSNP
rs559101002 2277 dbSNP
rs1045873033 2284 dbSNP
rs974293978 2285 dbSNP
rs1330078553 2291 dbSNP
rs543991907 2296 dbSNP
rs1396537730 2298 dbSNP
rs927357334 2303 dbSNP
rs574711074 2306 dbSNP
rs937224868 2318 dbSNP
rs926795605 2323 dbSNP
rs1457234785 2327 dbSNP
rs1321438346 2328 dbSNP
rs1161205776 2330 dbSNP
rs1054694717 2332 dbSNP
rs892930450 2336 dbSNP
rs1176849909 2342 dbSNP
rs1253892998 2342 dbSNP
rs1466687042 2342 dbSNP
rs938218678 2343 dbSNP
rs1487712638 2349 dbSNP
rs1405318242 2351 dbSNP
rs201893638 2352 dbSNP
rs1041587619 2354 dbSNP
rs1372473571 2355 dbSNP
rs144577578 2355 dbSNP
rs901535780 2355 dbSNP
rs1385807802 2356 dbSNP
rs766187181 2357 dbSNP
rs997118584 2357 dbSNP
rs1316263671 2358 dbSNP
rs1226920257 2360 dbSNP
rs1395696467 2361 dbSNP
rs1028768817 2362 dbSNP
rs1431646968 2362 dbSNP
rs917887690 2363 dbSNP
rs945393552 2372 dbSNP
rs1488276821 2373 dbSNP
rs1007097357 2374 dbSNP
rs1349419532 2381 dbSNP
rs541748596 2388 dbSNP
rs1042862586 2402 dbSNP
rs375297012 2403 dbSNP
rs145154736 2408 dbSNP
rs903959191 2423 dbSNP
rs1001093073 2425 dbSNP
rs1017528832 2437 dbSNP
rs529599190 2448 dbSNP
rs900353314 2452 dbSNP
rs1296273518 2453 dbSNP
rs762055502 2454 dbSNP
rs530426785 2456 dbSNP
rs751357869 2457 dbSNP
rs1261526268 2463 dbSNP
rs754911427 2465 dbSNP
rs971416113 2471 dbSNP
rs981841940 2475 dbSNP
rs1194105345 2482 dbSNP
rs950381659 2483 dbSNP
rs927441022 2484 dbSNP
rs1004546415 2485 dbSNP
rs1016410847 2487 dbSNP
rs1261390388 2490 dbSNP
rs1190713076 2492 dbSNP
rs1486276999 2499 dbSNP
rs963129312 2504 dbSNP
rs1199356899 2505 dbSNP
rs1373299030 2507 dbSNP
rs1342200846 2517 dbSNP
rs1252734733 2522 dbSNP
rs937426360 2524 dbSNP
rs1317083722 2529 dbSNP
rs78167784 2529 dbSNP
rs914402279 2531 dbSNP
rs1364865632 2534 dbSNP
rs752701319 2552 dbSNP
rs1340962745 2555 dbSNP
rs1333652684 2559 dbSNP
rs774708001 2560 dbSNP
rs1398675476 2561 dbSNP
rs566103836 2566 dbSNP
rs1041640135 2573 dbSNP
rs1465241795 2585 dbSNP
rs1338090423 2589 dbSNP
rs901751956 2589 dbSNP
rs151336902 2593 dbSNP
rs1296480561 2597 dbSNP
rs528163660 2598 dbSNP
rs959534292 2608 dbSNP
rs1242680088 2619 dbSNP
rs1291189139 2620 dbSNP
rs1251976442 2630 dbSNP
rs992402474 2631 dbSNP
rs918211960 2635 dbSNP
rs1465109587 2636 dbSNP
rs1457040836 2638 dbSNP
rs1234883669 2639 dbSNP
rs1255967411 2639 dbSNP
rs755627404 2641 dbSNP
rs1042419162 2643 dbSNP
rs1284528495 2650 dbSNP
rs888755377 2651 dbSNP
rs1206162447 2657 dbSNP
rs1006398537 2664 dbSNP
rs1429986880 2677 dbSNP
rs925290385 2686 dbSNP
rs936747373 2689 dbSNP
rs1328401974 2692 dbSNP
rs1406351612 2697 dbSNP
rs1039531641 2698 dbSNP
rs1444741836 2700 dbSNP
rs777427066 2701 dbSNP
rs748942214 2718 dbSNP
rs770546165 2722 dbSNP
rs1178685278 2725 dbSNP
rs1165331059 2748 dbSNP
rs548036665 2753 dbSNP
rs1457082692 2768 dbSNP
rs971638316 2781 dbSNP
rs1215131510 2791 dbSNP
rs1451968742 2794 dbSNP
rs1288804978 2795 dbSNP
rs981679312 2801 dbSNP
rs1352743711 2807 dbSNP
rs927293311 2816 dbSNP
rs780437387 2826 dbSNP
rs754327789 2830 dbSNP
rs886383243 2830 dbSNP
rs990657714 2831 dbSNP
rs914639981 2832 dbSNP
rs1321983328 2835 dbSNP
rs1004944492 2839 dbSNP
rs1015906094 2853 dbSNP
rs1452780431 2856 dbSNP
rs1158524193 2860 dbSNP
rs1289289617 2863 dbSNP
rs945909606 2865 dbSNP
rs867285766 2869 dbSNP
rs977215121 2874 dbSNP
rs374270196 2891 dbSNP
rs1192579485 2892 dbSNP
rs1478142312 2896 dbSNP
rs1245978548 2900 dbSNP
rs1196441431 2905 dbSNP
rs566123245 2909 dbSNP
rs923228167 2910 dbSNP
rs1215725725 2913 dbSNP
rs898827197 2925 dbSNP
rs554202422 2932 dbSNP
rs1307707551 2938 dbSNP
rs1316907449 2940 dbSNP
rs759873932 2946 dbSNP
rs1216933143 2952 dbSNP
rs1367137332 2952 dbSNP
rs1050336869 2957 dbSNP
rs548607787 2958 dbSNP
rs1433357211 2985 dbSNP
rs1262909686 3007 dbSNP
rs1298125270 3007 dbSNP
rs1418344547 3014 dbSNP
rs1034545860 3016 dbSNP
rs570291499 3028 dbSNP
rs941689320 3030 dbSNP
rs992350366 3031 dbSNP
rs373467054 3037 dbSNP
rs768311956 3038 dbSNP
rs1192932260 3046 dbSNP
rs558503354 3048 dbSNP
rs1239329409 3051 dbSNP
rs1025821478 3053 dbSNP
rs907336780 3054 dbSNP
rs1003548344 3055 dbSNP
rs966922019 3068 dbSNP
rs1159520533 3069 dbSNP
rs1365280364 3071 dbSNP
rs958981597 3086 dbSNP
rs769088171 3090 dbSNP
rs990154535 3097 dbSNP
rs189520785 3098 dbSNP
rs1304126834 3100 dbSNP
rs1407206446 3101 dbSNP
rs1454637107 3108 dbSNP
rs777065989 3112 dbSNP
rs1329454598 3113 dbSNP
rs534778813 3114 dbSNP
rs1466853565 3116 dbSNP
rs925269076 3129 dbSNP
rs977435881 3131 dbSNP
rs552789541 3137 dbSNP
rs1415906129 3142 dbSNP
rs572605736 3144 dbSNP
rs1223287850 3148 dbSNP
rs1235746381 3158 dbSNP
rs541960075 3159 dbSNP
rs941725468 3160 dbSNP
rs370212394 3171 dbSNP
rs1204992262 3186 dbSNP
rs769864279 3188 dbSNP
rs1230717392 3189 dbSNP
rs1228185087 3191 dbSNP
rs933137740 3195 dbSNP
rs1480041787 3196 dbSNP
rs1377886161 3204 dbSNP
rs1300563145 3216 dbSNP
rs1177661668 3228 dbSNP
rs1400545628 3233 dbSNP
rs1330214540 3235 dbSNP
rs897456888 3236 dbSNP
rs1351339877 3237 dbSNP
rs1165417244 3240 dbSNP
rs1252590578 3245 dbSNP
rs1411796371 3247 dbSNP
rs1479332809 3248 dbSNP
rs1440600329 3255 dbSNP
rs1237822818 3256 dbSNP
rs1051577128 3257 dbSNP
rs886289989 3262 dbSNP
rs1221566339 3281 dbSNP
rs140702604 3282 dbSNP
rs1376945470 3293 dbSNP
rs1168644467 3297 dbSNP
rs907387474 3306 dbSNP
rs1353962129 3317 dbSNP
rs575460827 3319 dbSNP
rs1392686148 3324 dbSNP
rs1038027511 3326 dbSNP
rs765155037 3327 dbSNP
rs545833975 3329 dbSNP
rs1348023687 3347 dbSNP
rs564047634 3349 dbSNP
rs1420415655 3357 dbSNP
rs763141991 3364 dbSNP
rs181333781 3365 dbSNP
rs116516692 3372 dbSNP
rs751836275 3385 dbSNP
rs1190956722 3389 dbSNP
rs561779396 3399 dbSNP
rs1224922911 3402 dbSNP
rs1025125647 3410 dbSNP
rs759198059 3411 dbSNP
rs1270468913 3421 dbSNP
rs866319747 3424 dbSNP
rs978333830 3425 dbSNP
rs1284674562 3430 dbSNP
rs998915476 3435 dbSNP
rs1301776416 3437 dbSNP
rs551593942 3438 dbSNP
rs752613710 3444 dbSNP
rs756187100 3449 dbSNP
rs530244012 3458 dbSNP
rs548731569 3459 dbSNP
rs1400472074 3462 dbSNP
rs1189905763 3469 dbSNP
rs1360053071 3470 dbSNP
rs570277277 3473 dbSNP
rs985973948 3475 dbSNP
rs1198386993 3479 dbSNP
rs1175582739 3494 dbSNP
rs531088631 3495 dbSNP
rs922009567 3512 dbSNP
rs1431810568 3515 dbSNP
rs1265726963 3516 dbSNP
rs1269287858 3519 dbSNP
rs777406806 3540 dbSNP
rs552188195 3544 dbSNP
rs963331181 3545 dbSNP
rs150088734 3554 dbSNP
rs750374271 3555 dbSNP
rs933381212 3557 dbSNP
rs1256257003 3559 dbSNP
rs1184942603 3563 dbSNP
rs1321169394 3569 dbSNP
rs1419081585 3577 dbSNP
rs34093199 3579 dbSNP
rs1400580495 3583 dbSNP
rs1410602685 3583 dbSNP
rs373113833 3583 dbSNP
rs753446942 3584 dbSNP
rs534837260 3586 dbSNP
rs1203762791 3588 dbSNP
rs553195113 3599 dbSNP
rs928931007 3600 dbSNP
rs1364227315 3602 dbSNP
rs568500711 3606 dbSNP
rs940552074 3608 dbSNP
rs1424629943 3611 dbSNP
rs1464724512 3613 dbSNP
rs1426322301 3616 dbSNP
rs927719379 3621 dbSNP
rs1037619594 3629 dbSNP
rs1304313379 3630 dbSNP
rs938880081 3643 dbSNP
rs1190169787 3655 dbSNP
rs1443646011 3657 dbSNP
rs1256170372 3664 dbSNP
rs535305524 3665 dbSNP
rs937009037 3670 dbSNP
rs1055438830 3675 dbSNP
rs1011791117 3681 dbSNP
rs895501816 3685 dbSNP
rs1268351981 3694 dbSNP
rs1013974510 3697 dbSNP
rs1341209364 3699 dbSNP
rs1041495815 3709 dbSNP
rs1312094697 3715 dbSNP
rs998800753 3721 dbSNP
rs1297156142 3725 dbSNP
rs756824345 3730 dbSNP
rs1030407720 3743 dbSNP
rs1465459103 3745 dbSNP
rs954817140 3765 dbSNP
rs1165522661 3767 dbSNP
rs1473403950 3770 dbSNP
rs561825967 3775 dbSNP
rs1008020174 3777 dbSNP
rs1186197566 3779 dbSNP
rs557088812 3797 dbSNP
rs1239655226 3803 dbSNP
rs1198811982 3804 dbSNP
rs902673007 3821 dbSNP
rs570126645 3822 dbSNP
rs1211638854 3825 dbSNP
rs1356930728 3828 dbSNP
rs1032578987 3829 dbSNP
rs1243894179 3830 dbSNP
rs958563877 3837 dbSNP
rs1310267674 3840 dbSNP
rs973334609 3841 dbSNP
rs1334414114 3842 dbSNP
rs1325937303 3844 dbSNP
rs368181148 3845 dbSNP
rs1390675081 3858 dbSNP
rs1028909106 3867 dbSNP
rs745547588 3868 dbSNP
rs919155955 3884 dbSNP
rs950390118 3893 dbSNP
rs981763883 3894 dbSNP
rs1241729206 3907 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 84159.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' cgGACAG-GGAUU--UA---GGAAGGAc 5'
            || ||  :|||  ||   ||||||| 
Target 5' --CU-UCAAUUAAUUAUUUACCUUCCUg 3'
 		1 - 25
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_032199 | 3UTR | UAUCCAAAGGUGGAAACAAAAGAAUGUAGAGAUCCAGUGUUAAGAGUUCCAUUUGCUUCAAUUAAUUAUUUACCUUCCUGUGGAAUAAUAUAUAUAUAUAUAUUUAAUAGAACCAUAGAUAGACUAGUAGAAUUUAGAUUAUAAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_032199 | 3UTR | UUUGCUUCAAUUAAUUAUUUACCUUCCUGUGGAAUAAUAUAUAUAUAUAUAUUUAAUAGAACCAUAGAUAGACUAGUAGAAUUUAGAUUAUAAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_032199 | 3UTR | ACAAAAGAAUGUAGAGAUCCAGUGUUAAGAGUUCCAUUUGCUUCAAUUAAUUAUUUACCUUCCUGUGGAAUAAUAUAUAUAUAUAUAUUUAAUAGAACCAUAGAUAGACUAGUAGAAUUUAGAUUAUAAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_032199 | 3UTR | AGAUCCAGUGUUAAGAGUUCCAUUUGCUUCAAUUAAUUAUUUACCUUCCUGUGGAAUAAUAUAUAUAUAUAUAUUUAAUAGAACCAUAGAUAGACUAGUAGAAUUUAGAUUAUAAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_032199 | 3UTR | AGAGUUCCAUUUGCUUCAAUUAAUUAUUUACCUUCCUGUGGAAUAAUAUAUAUAUAUAUAUUUAAUAGAACCAUAGAUAGACUAGUAGAAUUUAGAUUAUAAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000279873.7 | 3UTR | UUCCAUUUGCUUCAAUUAAUUAUUUACCUUCCUGUGGAAUAAUAUAUAUAUAUAUAUUUAAUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000279873.7 | 3UTR | CUUCAAUUAAUUAUUUACCUUCCUGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
152 hsa-miR-4476 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT065631 CLIC4 chloride intracellular channel 4 2 2
MIRT076187 GID4 GID complex subunit 4 homolog 2 4
MIRT086304 HOXD8 homeobox D8 2 6
MIRT110644 ARID5B AT-rich interaction domain 5B 2 2
MIRT144337 NFAT5 nuclear factor of activated T-cells 5 2 2
MIRT196634 TAOK1 TAO kinase 1 2 6
MIRT227655 SET SET nuclear proto-oncogene 2 2
MIRT263546 PPIF peptidylprolyl isomerase F 2 4
MIRT266189 TXNIP thioredoxin interacting protein 2 4
MIRT266815 SLC25A44 solute carrier family 25 member 44 2 2
MIRT285538 CDT1 chromatin licensing and DNA replication factor 1 2 2
MIRT295094 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT300906 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT304110 CNNM4 cyclin and CBS domain divalent metal cation transport mediator 4 2 6
MIRT314891 RGMB repulsive guidance molecule family member b 2 2
MIRT364225 ANP32B acidic nuclear phosphoprotein 32 family member B 2 2
MIRT366237 VMA21 VMA21, vacuolar ATPase assembly factor 2 2
MIRT405440 RAB5B RAB5B, member RAS oncogene family 2 2
MIRT443613 OR2D2 olfactory receptor family 2 subfamily D member 2 2 2
MIRT445947 SCML4 Scm polycomb group protein like 4 2 2
MIRT445957 MLLT11 MLLT11, transcription factor 7 cofactor 2 2
MIRT445970 IKZF5 IKAROS family zinc finger 5 2 2
MIRT448066 MMP15 matrix metallopeptidase 15 2 2
MIRT449498 ZBTB4 zinc finger and BTB domain containing 4 2 2
MIRT450831 IFFO1 intermediate filament family orphan 1 2 2
MIRT451270 NDUFA11 NADH:ubiquinone oxidoreductase subunit A11 2 2
MIRT451318 LGALS3BP galectin 3 binding protein 2 2
MIRT451403 FARSA phenylalanyl-tRNA synthetase alpha subunit 2 2
MIRT451941 TMPRSS5 transmembrane protease, serine 5 2 2
MIRT452028 NLRP6 NLR family pyrin domain containing 6 2 2
MIRT452503 HMGXB3 HMG-box containing 3 2 2
MIRT453852 SDK1 sidekick cell adhesion molecule 1 2 2
MIRT454523 ZFYVE27 zinc finger FYVE-type containing 27 2 2
MIRT455402 PLA2G2F phospholipase A2 group IIF 2 2
MIRT455442 ID3 inhibitor of DNA binding 3, HLH protein 2 2
MIRT456983 MANEA mannosidase endo-alpha 2 2
MIRT457610 IDS iduronate 2-sulfatase 2 2
MIRT458319 TNFAIP8L3 TNF alpha induced protein 8 like 3 2 2
MIRT458756 CES2 carboxylesterase 2 2 2
MIRT458960 SAMD4B sterile alpha motif domain containing 4B 2 2
MIRT460403 GPHA2 glycoprotein hormone alpha 2 2 2
MIRT460632 IGFBP4 insulin like growth factor binding protein 4 2 2
MIRT461760 DDX11 DEAD/H-box helicase 11 2 2
MIRT461924 NECAB3 N-terminal EF-hand calcium binding protein 3 2 2
MIRT461977 PACSIN1 protein kinase C and casein kinase substrate in neurons 1 2 2
MIRT462271 TPI1 triosephosphate isomerase 1 2 2
MIRT462304 PPM1H protein phosphatase, Mg2+/Mn2+ dependent 1H 2 2
MIRT462725 SEMA4G semaphorin 4G 2 2
MIRT463414 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT463525 ZBTB7B zinc finger and BTB domain containing 7B 2 2
MIRT464089 VPS4A vacuolar protein sorting 4 homolog A 2 2
MIRT464623 UBE4B ubiquitination factor E4B 2 2
MIRT465030 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT465562 TOB2 transducer of ERBB2, 2 2 2
MIRT465890 TMEM43 transmembrane protein 43 2 2
MIRT466428 TFAP2A transcription factor AP-2 alpha 2 8
MIRT466593 TBC1D2B TBC1 domain family member 2B 2 2
MIRT467623 SLC7A5 solute carrier family 7 member 5 2 2
MIRT468511 SESN2 sestrin 2 2 2
MIRT468649 SEH1L SEH1 like nucleoporin 2 2
MIRT468737 SDC4 syndecan 4 2 2
MIRT468752 SDC2 syndecan 2 2 2
MIRT469182 RNF111 ring finger protein 111 2 2
MIRT469476 REEP5 receptor accessory protein 5 2 2
MIRT472078 NOVA2 NOVA alternative splicing regulator 2 2 2
MIRT472093 NOLC1 nucleolar and coiled-body phosphoprotein 1 2 2
MIRT472194 NHP2L1 small nuclear ribonucleoprotein 13 2 2
MIRT472453 NAV2 neuron navigator 2 2 6
MIRT474493 KLHDC8B kelch domain containing 8B 2 2
MIRT475174 IP6K1 inositol hexakisphosphate kinase 1 2 2
MIRT475350 IFNLR1 interferon lambda receptor 1 2 2
MIRT476474 GATAD2B GATA zinc finger domain containing 2B 2 2
MIRT477094 FAM168A family with sequence similarity 168 member A 2 2
MIRT477179 F3 coagulation factor III, tissue factor 2 6
MIRT478026 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT479587 CDC42SE1 CDC42 small effector 1 2 2
MIRT480117 CALR calreticulin 2 2
MIRT480465 C11orf84 chromosome 11 open reading frame 84 2 2
MIRT480803 BLOC1S2 biogenesis of lysosomal organelles complex 1 subunit 2 2 6
MIRT481076 B4GALT1 beta-1,4-galactosyltransferase 1 2 2
MIRT482576 ABHD2 abhydrolase domain containing 2 2 2
MIRT482690 NXN nucleoredoxin 2 4
MIRT483599 SLC26A9 solute carrier family 26 member 9 2 2
MIRT485011 TNRC6B trinucleotide repeat containing 6B 2 4
MIRT488051 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT488067 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT488176 PRRC2B proline rich coiled-coil 2B 2 4
MIRT488859 UBTF upstream binding transcription factor, RNA polymerase I 2 2
MIRT489074 STARD3 StAR related lipid transfer domain containing 3 2 2
MIRT489181 ANKRD45 ankyrin repeat domain 45 2 2
MIRT489981 DDB1 damage specific DNA binding protein 1 2 2
MIRT490225 WRN Werner syndrome RecQ like helicase 2 2
MIRT491084 HILPDA hypoxia inducible lipid droplet associated 2 2
MIRT491540 HDAC5 histone deacetylase 5 2 2
MIRT492540 PSMD11 proteasome 26S subunit, non-ATPase 11 2 2
MIRT499034 MAG myelin associated glycoprotein 2 2
MIRT499420 PLCG2 phospholipase C gamma 2 2 4
MIRT499820 LONRF3 LON peptidase N-terminal domain and ring finger 3 2 2
MIRT500046 SDE2 SDE2 telomere maintenance homolog 2 6
MIRT500844 SYPL1 synaptophysin like 1 2 4
MIRT504518 PPP1R9B protein phosphatase 1 regulatory subunit 9B 2 2
MIRT505622 SLC25A37 solute carrier family 25 member 37 2 2
MIRT509134 STK4 serine/threonine kinase 4 2 2
MIRT509219 BUB3 BUB3, mitotic checkpoint protein 2 4
MIRT510752 SLC7A1 solute carrier family 7 member 1 2 2
MIRT512115 CREBZF CREB/ATF bZIP transcription factor 2 2
MIRT512317 ACTR2 ARP2 actin related protein 2 homolog 2 6
MIRT517395 BGN biglycan 2 4
MIRT518412 SSU72 SSU72 homolog, RNA polymerase II CTD phosphatase 2 4
MIRT521362 RPL35A ribosomal protein L35a 2 2
MIRT525072 FRK fyn related Src family tyrosine kinase 2 2
MIRT525800 SOD2 superoxide dismutase 2 2 2
MIRT530430 SULT1B1 sulfotransferase family 1B member 1 2 2
MIRT541467 AURKA aurora kinase A 2 2
MIRT544303 TSPYL1 TSPY like 1 2 2
MIRT546415 SPRED3 sprouty related EVH1 domain containing 3 2 2
MIRT546582 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT548764 CNN3 calponin 3 2 2
MIRT549809 KIAA0391 KIAA0391 2 2
MIRT550611 MTHFR methylenetetrahydrofolate reductase 2 2
MIRT552227 FIG4 FIG4 phosphoinositide 5-phosphatase 2 4
MIRT554008 SPTLC1 serine palmitoyltransferase long chain base subunit 1 2 2
MIRT554116 SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 2 2
MIRT555100 PURB purine rich element binding protein B 2 2
MIRT560290 HRH2 histamine receptor H2 2 2
MIRT560381 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT560800 EPM2AIP1 EPM2A interacting protein 1 2 2
MIRT560978 IWS1 IWS1, SUPT6H interacting protein 2 2
MIRT561161 BCL2L12 BCL2 like 12 2 2
MIRT562389 EN2 engrailed homeobox 2 2 2
MIRT562482 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT567784 DGAT2 diacylglycerol O-acyltransferase 2 2 2
MIRT568831 TRIM67 tripartite motif containing 67 2 2
MIRT569555 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT572382 ATOX1 antioxidant 1 copper chaperone 2 2
MIRT575792 Tnfrsf10b tumor necrosis factor receptor superfamily, member 10b 2 2
MIRT610505 CTBS chitobiase 2 4
MIRT616605 PAPD5 poly(A) RNA polymerase D5, non-canonical 2 2
MIRT621780 TMEM87B transmembrane protein 87B 2 2
MIRT634217 TMEM192 transmembrane protein 192 2 2
MIRT639651 WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules 2 2
MIRT642500 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT643217 TYW3 tRNA-yW synthesizing protein 3 homolog 2 4
MIRT674822 KCNJ10 potassium voltage-gated channel subfamily J member 10 2 2
MIRT697356 ZNF426 zinc finger protein 426 2 2
MIRT704675 CHTOP chromatin target of PRMT1 2 2
MIRT708704 TFDP2 transcription factor Dp-2 2 2
MIRT709660 DFFB DNA fragmentation factor subunit beta 2 2
MIRT711280 SDR9C7 short chain dehydrogenase/reductase family 9C member 7 2 2
MIRT713733 SUCO SUN domain containing ossification factor 2 2
MIRT715006 TSPAN11 tetraspanin 11 2 2
MIRT718400 ALDH1A3 aldehyde dehydrogenase 1 family member A3 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miR-4476 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4476 Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4476 Fluorouracil 3385 NSC19893 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-miR-4476 Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-4476 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-mir-4476 Androstenedione 6128 NSC9563 resistant cell line (MCF-7)
hsa-mir-4476 Androstenedione+Anastrozole resistant cell line (MCF-7)
hsa-mir-4476 Androstenedione+Letrozole resistant cell line (MCF-7)
hsa-miR-4476 Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-4476 Paclitaxel 36314 NSC125973 approved sensitive cell line (HS578T)
hsa-miR-4476 Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4476 Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-4476 Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-4476 Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (100 ng/ml)
hsa-miR-4476 Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR4)

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