miRTarBase - #MIRT111801


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pre-miRNA Information
pre-miRNA hsa-mir-548ac   
Genomic Coordinates chr1: 116560024 - 116560111
Description Homo sapiens miR-548ac stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548ac
Sequence 53| CAAAAACCGGCAAUUACUUUUG |74
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 1 - 116560056 29233923 MiREDiBase
A-to-I 5 1 - 116560055 29233923 MiREDiBase
A-to-I 6 1 - 116560054 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1182074110 6 dbSNP
rs1392446444 6 dbSNP
rs1326234665 7 dbSNP
rs556579863 8 dbSNP
rs993390910 9 dbSNP
rs901450363 13 dbSNP
rs538553306 22 dbSNP
Putative Targets

Gene Information
Gene Symbol MPZL1   
Synonyms MPZL1b, PZR, PZR1b, PZRa, PZRb
Description myelin protein zero like 1
Transcript NM_024569   
Other Transcripts NM_003953 , NM_001146191   
Expression
Putative miRNA Targets on MPZL1
3'UTR of MPZL1
(miRNA target sites are highlighted)		 
>MPZL1|NM_024569|3'UTR
   1 ACCACTCCGGCGGACATCACAGTGACAAGATTAACAAGTCAGAGTCTGTGGTGTATGCGGATATCCGAAAGAATTAAGAG
  81 AATACCTAGAACATATCCTCAGCAAGAAACAAAACCAAACTGGACTCTCGTGCAGAAAATGTAGCCCATTACCACATGTA
 161 GCCTTGGAGACCCAGGCAAGGACAAGTACACGTGTACTCACAGAGGGAGAGAAAGATGTGTACAAAGGATATGTATAAAT
 241 ATTCTATTTAGTCATCCTGATATGAGGAGCCAGTGTTGCATGATGAAAAGATGGTATGATTCTACATATGTACCCATTGT
 321 CTTGCTGTTTTTGTACTTTCTTTTCAGGTCATTTACAATTGGGAGATTTCAGAAACATTCCTTTCACCATCATTTAGAAA
 401 TGGTTTGCCTTAATGGAGACAATAGCAGATCCTGTAGTATTTCCAGTAGACATGGCCTTTTAATCTAAGGGCTTAAGACT
 481 GATTAGTCTTAGCATTTACTGTAGTTGGAGGATGGAGATGCTATGATGGAAGCATACCCAGGGTGGCCTTTAGCACAGTA
 561 TCAGTACCATTTATTTGTCTGCCGCTTTTAAAAAATACCCATTGGCTATGCCACTTGAAAACAATTTGAGAAGTTTTTTT
 641 GAAGTTTTTCTCACTAAAATATGGGGCAATTGTTAGCCTTACATGTTGTGTAGACTTACTTTAAGTTTGCACCCTTGAAA
 721 TGTGTCATATCAATTTCTGGATTCATAATAGCAAGATTAGCAAAGGATAAATGCCGAAGGTCACTTCATTCTGGACACAG
 801 TTGGATCAATACTGATTAAGTAGAAAATCCAAGCTTTGCTTGAGAACTTTTGTAACGTGGAGAGTAAAAAGTATCGGTTT
 881 TATTCTTTGCTGATGTCCTTTCTGCTTGAAATAACAGTCACCATACAGCTAAAGGAGAGGAGTTTCTTTCCTTCTAAGTA
 961 GGCAGAAATGGTATCATTATGTTGCCGCTCTCCAATCTCCCAGAGCTCGCTCTCTAGAGAATCACCTTCTTTCGCTTTTT
1041 TTTTTTTTTTTGAGGTAGAGTCTCACTATGTTGCCCAGACTAGCCTTGAACTCTTGGGCTCAAGTGATTCTCCCTCCTCA
1121 GCCTCCCGAGTAGCTGGAACGAACTATAGTTGCACCACTGCAGCTGGCAAGAATCACCTTCTTTATAAAGCGTCAGTCAT
1201 GCTTCCAGCAAGAGGCAGCATCAGTCATGGCTTTATAACAGCTTCATGGTGCCTCAAAGACTGTTGAGGTTAATGAGAGC
1281 CTAGATTAGACAGTTTGGCTGTCCTTCCCTAAAACTTGTTTTCTCCTATTCACTACTCCCCACCGCACTTAAAATCTATG
1361 AGTTTTTACTTTTTACTGGGAATGGAAAGTGTGGTGAAGATCATTCAACACTTATGTTGTCATTTCTCCCATTTTCTGAA
1441 TTTTTTTTTAAATTTCCCCCCTTTTAAAATTGTTCGAAAGCCCACAGTTATGGAAAGAATTACTGTCTAGATGGTCTGCA
1521 GAACGTGTTTGGGGTGAGTGGGAGTGAGGGGCAATGTTACTTTTTCTCCCTGTAGTTTGGAGTCCATTATGAGCTGCTGC
1601 TTTTTCTTCTCATCTTGTCATCTTCTGGGGATGTTTGAAGGCTGAGTTCCAACAGAATTCACAAAGGGAATAAAACAGGA
1681 TTGAGATTTTGAGGTGTGCACAAGGTGGTAAGATAAAGGGCATATGAGCTTCAAAACTAATGCTGTTGCATACATGAAGC
1761 CTTTTGTTTTTTGAGGAGCTATTTTTGTTATTCTTGTAACGCTCCACCTTACATGCCACATCTGTGTGAGTCAACAGGGA
1841 TCAGGTTTGGTCACCACACATGTCTGAAGCTGGGCAGCGTCTGCTCTGTGTTCTGTGTGGAATGGAGAAAAAAACGCCTG
1921 CCCTGCTGCCTTCCATGTTCATAGGCCCAGCCCAAGAGAGTGACACACAGTGCTGGCCCTGAGACATTTCCACAAAGTGG
2001 TCAACTCTGCCTTGCATCCTAAAACTTTTTGGGCATCTATTTTGAAAACTATAGGAGCCTTTGGAAGGCCTCTTATGTTT
2081 GGAGGGGAAGGGTGTTGAGATTGTCACCATCCTTCAAGCTGAGACTCCTGGTGAGCCTTTGCCACCATGAAAACCACATA
2161 GCTGACCAGGGCTGTGCTTGAGGTACAGAGGACACACATTGTAGACAGGCCTGTGTCATGTTTCCTTACAGTCGTTTTTT
2241 ACAGAGAAAAGGGGCATTGTTTTTTCACTGCTTTCTCAACAGTTCCTGTGAATAAATGAAACATTTCGGAGCTCCCTGAG
2321 AGCAAGAGCCTTCACTTCTTCTTGCGGTGCCGGGACCATGTGTTGGTGAAGCTGGTGCTGTGGGGGCCACTCACTCGAAT
2401 GACACCTGGAGGCCTGTTCCTCCCTTACCACTCCCTTCCCCAGCCCGACTTCTTGGCCTCCTGCCCAACCAGACACCTCA
2481 AACTCTGTCAGTGCCCTGGCATTCTGGCAGAGAATCCTCACCAGTTCTCACCAACCTTCCCCCCAGGCAAGGGCAGCTGC
2561 CAGCATGGTGCTCTGCCAGGACAGGTTTCCCTGAAGGAAGCTGCTCACACTGAGATGAGCCTCTCAGGGCAGGACCTCTT
2641 CCCAAGCCCTGCACACCCACCCCTGCAGCCCTTTTGGCTCCCCTTTTCCCTGTGCCTCAGCACTCCTTTCCTGGTTGCAG
2721 ATAACGAACTAAGGTTGCCTAAAGGGCAGATCTGCCCTCTCCATGTCTTCGTCCTGGCAAACAGGGTCGTCTTAAAATTA
2801 TGCGCTAATTCTGTATGGGAGCACTCAAAAGGCATTACTTAGAGATTGAAATTTCAAACTATCTCTAGTTTTTCAATGGA
2881 AATATATCAGCTAGGGAAAAACCATCAAGCTCATTATTATTTTTTGATCTTCAGTTGTATTTTTGTGAATATTTTAATAC
2961 ATCTTTTTCAATTTCTGAATTGTGTTGTGTGCTCATTTTGACCAGAATAGAAAAAGAGATATGCCTTTCACTCATATCAT
3041 TCCAGCTACACCTGCCTTCTTTTCTTCAAAAATGCCGTCCGTGTGCCTGCTTCTGGGCCTTTGCACATGCTGTTCCCTGG
3121 GCCTGAAGCATGCCTTCTGCCAATATTCCTGTGGTTTGCTCTCTGACTTCCTTTAAGCCTCTGCTCAAATGTTACCTCCT
3201 CAGGGAGACCTTCTGTGATATATAAAAGAGCAAGCCCCCCACCCCACCGCCTCAGCCTTCCTGGCCCCCTCAGTTCTGCT
3281 CTAGTTACTCTATTTCTCTCCCTCTTTCCCAGTACACACTTGTCTGTTCTCCCGCATTAGAACATAGTTAACAAGAGACC
3361 AGAACCTTGCTGTTTTGTTCACTGCTCCGTCTGCAGTAAAGGGAACAGCACCTGGCACTTAGCTGCTCAATACATGTTAC
3441 GTGGATGGATGAGTAGGTGGAAGCATTCATCCATTCAGCAACCTACACTGAGAACAATCCTGTGCCAAGCACTGTGCTAA
3521 GCATAAGGAAACAAAACAAGACAAAGCTCCTCAAGGAGCTTGCCACAGGGTGGAGGTGACAGGTGACATGAATGGAAGTA
3601 ACTAGTAGTTACCAAATACTTGGTGTGAGCCAGGCACTTTGCATTTCTTTCTCTATTATTTCTGTGAGTTAACAGTAATT
3681 GTACTAATCTTAATCCCATTGTTTGAAAGATTATATGGCTTACCCAGGGCCACTTAGCTAATAAAGGAACAGAGAAGAGG
3761 GGCTGGGCCTGGGGCCGCTGTTTGATCCACAGCCTTGTTCCTAACCACTATGCCCTGTGGCCTCTCACACCAAAAGGAAG
3841 TACCAAACTGCTTCCTTACTCAAATAAATGTGCTGAAATGCAGTTGCAGTTTTCTCCCAGTCCCTTAGGAGCTGGTTAGA
3921 GAGTCCCTTAGGAACTTGAGAGGGTAGTGTAGTCTAGGTGGTAGGCACAGATGTCTGAGAGCTTTAACCTCAGTCTGGAA
4001 GACAATGTGGTGACTTAATTTGTTGAGAACTATGTTACAAATAATGTGTTACTAATAAAACATTGAGGCTTCGCAAAAAA
4081 AAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' guUUUCA---UUAACGGCCAAAAac 5'
            |:|||   || | :|||||||  
Target 5' ggAGAGTAAAAAGTATCGGTTTTat 3'
 859 - 883 144.00 -12.00
2 
miRNA  3' guuuucaUUAACGGCCAAAAAc 5'
                 |: |||:| ||||| 
Target 5' cattatgAGCTGCTGCTTTTTc 3'
 1585 - 1606 127.00 -6.00
3 
miRNA  3' guuUUCAU---UAACG----GCCAAAAAc 5'
             | |||   ||||:    | |||||| 
Target 5' catATGTACCCATTGTCTTGCTGTTTTTg 3'
 305 - 333 125.00 -9.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM899102 12 COSMIC
COSM4024821 35 COSMIC
COSM8271431 41 COSMIC
COSM5844411 43 COSMIC
COSM7276808 47 COSMIC
COSM6714955 48 COSMIC
COSM8980040 56 COSMIC
COSM7767274 60 COSMIC
COSM9194860 60 COSMIC
COSM6024832 67 COSMIC
COSM8303229 68 COSMIC
COSM9573724 72 COSMIC
COSM8901498 75 COSMIC
COSN30114273 85 COSMIC
COSN30686939 94 COSMIC
COSN30184602 99 COSMIC
COSN30519159 101 COSMIC
COSN20045122 114 COSMIC
COSN13487639 131 COSMIC
COSN16249238 189 COSMIC
COSN31598351 192 COSMIC
COSN31524707 193 COSMIC
COSN31568256 245 COSMIC
COSN30534189 307 COSMIC
COSN31600536 330 COSMIC
COSN31561677 382 COSMIC
COSN30538237 482 COSMIC
COSN23014023 528 COSMIC
COSN27997381 601 COSMIC
COSN25580265 1192 COSMIC
COSN23865831 1400 COSMIC
COSN7183058 1775 COSMIC
COSN6007317 1798 COSMIC
COSN6007318 2308 COSMIC
COSN21116335 2346 COSMIC
COSN32007760 2801 COSMIC
COSN23692886 3058 COSMIC
COSN23687836 3059 COSMIC
COSN7183059 3078 COSMIC
COSN22537243 3777 COSMIC
COSN23347922 3842 COSMIC
COSN6007319 3905 COSMIC
COSN27683912 3977 COSMIC
COSN16119910 4007 COSMIC
COSN23531118 4030 COSMIC
COSN25498737 4065 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs139028868 9 dbSNP
rs528200726 10 dbSNP
rs1033782399 12 dbSNP
rs146869026 13 dbSNP
rs1414789609 14 dbSNP
rs1178023407 15 dbSNP
rs1013741663 16 dbSNP
rs34626910 30 dbSNP
rs1024755264 35 dbSNP
rs1433068744 36 dbSNP
rs776847529 37 dbSNP
rs761870685 39 dbSNP
rs769945676 45 dbSNP
rs773113947 55 dbSNP
rs375874838 59 dbSNP
rs200004895 60 dbSNP
rs1367220091 67 dbSNP
rs190661858 68 dbSNP
rs767364029 77 dbSNP
rs1306268462 78 dbSNP
rs752401822 80 dbSNP
rs1404374690 82 dbSNP
rs1259287139 87 dbSNP
rs377498586 90 dbSNP
rs753339952 93 dbSNP
rs1245743878 96 dbSNP
rs1476140674 97 dbSNP
rs1478183265 99 dbSNP
rs867739364 101 dbSNP
rs1187543450 102 dbSNP
rs1417043981 112 dbSNP
rs1409169024 122 dbSNP
rs748893161 123 dbSNP
rs780609532 127 dbSNP
rs747454174 128 dbSNP
rs769009844 129 dbSNP
rs781494254 130 dbSNP
rs569216690 131 dbSNP
rs1216394992 139 dbSNP
rs1270207062 141 dbSNP
rs1276492792 142 dbSNP
rs1435447819 146 dbSNP
rs976133874 154 dbSNP
rs536729212 155 dbSNP
rs553625512 156 dbSNP
rs923391451 162 dbSNP
rs1377152234 164 dbSNP
rs929442285 180 dbSNP
rs1047888327 192 dbSNP
rs1447845154 193 dbSNP
rs1357913424 206 dbSNP
rs1160675270 209 dbSNP
rs1331471593 210 dbSNP
rs141592237 213 dbSNP
rs1417604065 215 dbSNP
rs557934033 233 dbSNP
rs1447256440 247 dbSNP
rs150901710 249 dbSNP
rs770909210 255 dbSNP
rs1182222020 261 dbSNP
rs1320951679 263 dbSNP
rs78809449 264 dbSNP
rs1235601561 265 dbSNP
rs1206579652 267 dbSNP
rs1483395317 270 dbSNP
rs1273984164 271 dbSNP
rs1013299452 274 dbSNP
rs555445604 275 dbSNP
rs573675766 279 dbSNP
rs1228046655 292 dbSNP
rs1351118580 295 dbSNP
rs1377434586 298 dbSNP
rs1281738361 301 dbSNP
rs1239814847 306 dbSNP
rs1410990734 317 dbSNP
rs1370531230 326 dbSNP
rs1306871798 331 dbSNP
rs1427333484 340 dbSNP
rs544233422 341 dbSNP
rs1292999737 349 dbSNP
rs1032188147 350 dbSNP
rs556428995 358 dbSNP
rs182898542 359 dbSNP
rs185441444 360 dbSNP
rs1267347185 369 dbSNP
rs1018230308 377 dbSNP
rs745844402 378 dbSNP
rs1438435024 389 dbSNP
rs1490864397 390 dbSNP
rs1180637026 392 dbSNP
rs1266188720 394 dbSNP
rs1221148219 398 dbSNP
rs190151302 403 dbSNP
rs1286750351 408 dbSNP
rs1229474218 409 dbSNP
rs1350400611 426 dbSNP
rs1287019998 427 dbSNP
rs976058769 435 dbSNP
rs1369144670 437 dbSNP
rs1157753573 442 dbSNP
rs1293706630 455 dbSNP
rs1457077433 457 dbSNP
rs923324504 458 dbSNP
rs772028455 489 dbSNP
rs1457624558 508 dbSNP
rs1368849917 512 dbSNP
rs950816552 521 dbSNP
rs41270734 528 dbSNP
rs909352296 530 dbSNP
rs1268171150 557 dbSNP
rs1161391456 559 dbSNP
rs1389976676 560 dbSNP
rs1487608352 576 dbSNP
rs1446857548 582 dbSNP
rs1209692425 584 dbSNP
rs1332820382 585 dbSNP
rs1266740969 587 dbSNP
rs1374151250 595 dbSNP
rs942239655 596 dbSNP
rs1313349316 598 dbSNP
rs1313058482 599 dbSNP
rs1323873352 601 dbSNP
rs1243120489 602 dbSNP
rs1301322857 602 dbSNP
rs1265345451 603 dbSNP
rs1055776202 609 dbSNP
rs1319238923 611 dbSNP
rs916876161 618 dbSNP
rs948991716 619 dbSNP
rs1322151783 625 dbSNP
rs1236435541 631 dbSNP
rs1457439820 642 dbSNP
rs1156795120 651 dbSNP
rs1467498872 654 dbSNP
rs182824572 662 dbSNP
rs539350818 664 dbSNP
rs902242740 668 dbSNP
rs559338880 670 dbSNP
rs1425307075 681 dbSNP
rs1189492924 684 dbSNP
rs561803077 692 dbSNP
rs1185204323 715 dbSNP
rs999259539 728 dbSNP
rs1053570981 729 dbSNP
rs528889612 734 dbSNP
rs1006765331 738 dbSNP
rs1367772478 741 dbSNP
rs1231815038 745 dbSNP
rs1309936968 750 dbSNP
rs1466107161 756 dbSNP
rs112509046 766 dbSNP
rs187389510 776 dbSNP
rs575884055 777 dbSNP
rs1464708007 791 dbSNP
rs1030307664 802 dbSNP
rs950741560 805 dbSNP
rs543902588 810 dbSNP
rs1394597192 812 dbSNP
rs1392130992 819 dbSNP
rs1234073974 824 dbSNP
rs1449057651 839 dbSNP
rs909331630 841 dbSNP
rs533265059 857 dbSNP
rs766457747 858 dbSNP
rs1443365965 861 dbSNP
rs765160674 862 dbSNP
rs963875232 868 dbSNP
rs193160724 871 dbSNP
rs1302564306 872 dbSNP
rs1221016200 874 dbSNP
rs1481960870 876 dbSNP
rs138177732 877 dbSNP
rs1317374360 878 dbSNP
rs183755663 879 dbSNP
rs533772672 895 dbSNP
rs949636767 927 dbSNP
rs1210967687 931 dbSNP
rs1294968051 933 dbSNP
rs73037892 938 dbSNP
rs1340882559 941 dbSNP
rs114584283 943 dbSNP
rs537844487 947 dbSNP
rs750656873 952 dbSNP
rs935019903 952 dbSNP
rs115952869 957 dbSNP
rs1429258410 959 dbSNP
rs893559684 969 dbSNP
rs1165224643 971 dbSNP
rs942494741 972 dbSNP
rs72697779 980 dbSNP
rs901074343 981 dbSNP
rs998039480 987 dbSNP
rs149549702 988 dbSNP
rs1182248728 989 dbSNP
rs1482446567 991 dbSNP
rs759420414 996 dbSNP
rs370896138 1000 dbSNP
rs1211292308 1002 dbSNP
rs1356676818 1006 dbSNP
rs193135489 1009 dbSNP
rs1242424875 1010 dbSNP
rs147274411 1018 dbSNP
rs1302569678 1028 dbSNP
rs963499660 1030 dbSNP
rs1402321245 1033 dbSNP
rs542896003 1034 dbSNP
rs1340504535 1035 dbSNP
rs1259633435 1036 dbSNP
rs1325721731 1036 dbSNP
rs34678493 1036 dbSNP
rs397981853 1036 dbSNP
rs1023792651 1038 dbSNP
rs1219837614 1046 dbSNP
rs1413260603 1052 dbSNP
rs1465024556 1052 dbSNP
rs1303541405 1053 dbSNP
rs1310596385 1054 dbSNP
rs970916117 1062 dbSNP
rs1287093659 1069 dbSNP
rs982354436 1071 dbSNP
rs1451817106 1073 dbSNP
rs1266306763 1075 dbSNP
rs749969320 1076 dbSNP
rs1211530813 1078 dbSNP
rs1330954172 1097 dbSNP
rs1268641301 1100 dbSNP
rs140780938 1114 dbSNP
rs1218581317 1120 dbSNP
rs934945840 1128 dbSNP
rs529003841 1129 dbSNP
rs751889161 1132 dbSNP
rs1437678375 1141 dbSNP
rs1389874209 1147 dbSNP
rs1158960186 1151 dbSNP
rs544184427 1156 dbSNP
rs942483706 1159 dbSNP
rs1039882533 1166 dbSNP
rs1478078604 1174 dbSNP
rs1376651472 1176 dbSNP
rs720612 1182 dbSNP
rs1426679019 1186 dbSNP
rs933859796 1190 dbSNP
rs1046961233 1192 dbSNP
rs113574305 1193 dbSNP
rs1174912509 1197 dbSNP
rs1280718533 1202 dbSNP
rs1380574479 1215 dbSNP
rs1344442170 1219 dbSNP
rs147412044 1223 dbSNP
rs1016277752 1225 dbSNP
rs1366253293 1226 dbSNP
rs899188049 1240 dbSNP
rs183563193 1241 dbSNP
rs1023761359 1250 dbSNP
rs970884883 1252 dbSNP
rs35089441 1256 dbSNP
rs1414502624 1257 dbSNP
rs1423881132 1264 dbSNP
rs1171254132 1276 dbSNP
rs1450910252 1282 dbSNP
rs1390471084 1288 dbSNP
rs1187679727 1292 dbSNP
rs12072200 1299 dbSNP
rs1239060178 1309 dbSNP
rs1210759930 1310 dbSNP
rs879623636 1311 dbSNP
rs1365570763 1316 dbSNP
rs1343123311 1319 dbSNP
rs1297160007 1324 dbSNP
rs1213110566 1341 dbSNP
rs1381839846 1343 dbSNP
rs1285248537 1344 dbSNP
rs559923165 1345 dbSNP
rs186815046 1346 dbSNP
rs1356150802 1349 dbSNP
rs1241992608 1355 dbSNP
rs7414295 1357 dbSNP
rs1283621605 1359 dbSNP
rs964078105 1384 dbSNP
rs1407958152 1388 dbSNP
rs1316207247 1395 dbSNP
rs975181184 1412 dbSNP
rs567374175 1416 dbSNP
rs922394370 1420 dbSNP
rs1248455409 1422 dbSNP
rs191636295 1427 dbSNP
rs1046886230 1430 dbSNP
rs184020611 1440 dbSNP
rs1323781310 1441 dbSNP
rs941303971 1441 dbSNP
rs189800509 1442 dbSNP
rs1228177432 1443 dbSNP
rs974954722 1450 dbSNP
rs538692866 1451 dbSNP
rs1407737496 1457 dbSNP
rs899159505 1458 dbSNP
rs1012703292 1460 dbSNP
rs182056523 1462 dbSNP
rs185413057 1475 dbSNP
rs1003685970 1476 dbSNP
rs909618209 1477 dbSNP
rs1415495725 1478 dbSNP
rs1161325263 1484 dbSNP
rs1472932110 1491 dbSNP
rs1251139776 1493 dbSNP
rs1435784103 1497 dbSNP
rs1489585545 1501 dbSNP
rs1247568233 1508 dbSNP
rs957116813 1512 dbSNP
rs1011144349 1514 dbSNP
rs1023003242 1525 dbSNP
rs963743818 1526 dbSNP
rs755665325 1531 dbSNP
rs939881090 1534 dbSNP
rs1379310486 1541 dbSNP
rs1329125100 1542 dbSNP
rs1305675449 1550 dbSNP
rs1444855937 1552 dbSNP
rs758198756 1555 dbSNP
rs1293757328 1558 dbSNP
rs1439843120 1565 dbSNP
rs10125 1571 dbSNP
rs982553119 1574 dbSNP
rs1363222188 1581 dbSNP
rs1156997001 1582 dbSNP
rs142735758 1583 dbSNP
rs756943102 1594 dbSNP
rs778905383 1598 dbSNP
rs114704696 1610 dbSNP
rs66529257 1612 dbSNP
rs1250257963 1614 dbSNP
rs1258153821 1621 dbSNP
rs1458777362 1622 dbSNP
rs76940524 1629 dbSNP
rs1000189272 1630 dbSNP
rs35215126 1643 dbSNP
rs1236171440 1666 dbSNP
rs745676682 1668 dbSNP
rs906592012 1669 dbSNP
rs891905691 1678 dbSNP
rs1003610908 1684 dbSNP
rs1183984760 1692 dbSNP
rs1412206763 1695 dbSNP
rs562469824 1697 dbSNP
rs1467610594 1704 dbSNP
rs3752606 1704 dbSNP
rs1402530567 1709 dbSNP
rs1173143711 1713 dbSNP
rs544719220 1719 dbSNP
rs775498845 1720 dbSNP
rs1392323602 1722 dbSNP
rs996869005 1724 dbSNP
rs1029236797 1725 dbSNP
rs1428297298 1737 dbSNP
rs1260210531 1740 dbSNP
rs1202729590 1742 dbSNP
rs1483893861 1751 dbSNP
rs1341350319 1754 dbSNP
rs151009335 1760 dbSNP
rs1011529206 1772 dbSNP
rs1285764677 1776 dbSNP
rs527592376 1777 dbSNP
rs983785226 1780 dbSNP
rs1016987236 1782 dbSNP
rs772980354 1785 dbSNP
rs961124014 1787 dbSNP
rs964651462 1789 dbSNP
rs1293291993 1798 dbSNP
rs1278833466 1801 dbSNP
rs140712114 1802 dbSNP
rs972418335 1804 dbSNP
rs955063552 1814 dbSNP
rs3088322 1821 dbSNP
rs1371680745 1823 dbSNP
rs1190100959 1840 dbSNP
rs531430751 1846 dbSNP
rs949213896 1850 dbSNP
rs1257499356 1860 dbSNP
rs550728042 1861 dbSNP
rs549847786 1862 dbSNP
rs1276283299 1864 dbSNP
rs927215515 1873 dbSNP
rs935895566 1878 dbSNP
rs567624155 1880 dbSNP
rs948638147 1883 dbSNP
rs1292603673 1885 dbSNP
rs763201131 1891 dbSNP
rs572356212 1892 dbSNP
rs927938301 1894 dbSNP
rs891765308 1901 dbSNP
rs765685656 1908 dbSNP
rs1165347724 1909 dbSNP
rs143124803 1916 dbSNP
rs1167433422 1917 dbSNP
rs12745388 1918 dbSNP
rs1040478730 1925 dbSNP
rs1052518855 1927 dbSNP
rs1253316381 1928 dbSNP
rs902044969 1929 dbSNP
rs892546408 1936 dbSNP
rs774516609 1943 dbSNP
rs1211346600 1950 dbSNP
rs1044296409 1951 dbSNP
rs1272425745 1954 dbSNP
rs547076875 1956 dbSNP
rs1331195493 1962 dbSNP
rs1029681653 1966 dbSNP
rs1289067080 1969 dbSNP
rs1238492634 1975 dbSNP
rs888053897 1980 dbSNP
rs900056576 1987 dbSNP
rs566966827 1994 dbSNP
rs1387663159 2000 dbSNP
rs1416387432 2001 dbSNP
rs1335877922 2012 dbSNP
rs1006854352 2030 dbSNP
rs759950983 2038 dbSNP
rs74388383 2053 dbSNP
rs961026752 2054 dbSNP
rs146700702 2059 dbSNP
rs1023995915 2062 dbSNP
rs1469187107 2069 dbSNP
rs971662672 2071 dbSNP
rs1015310760 2073 dbSNP
rs536958815 2077 dbSNP
rs1468684104 2083 dbSNP
rs767718594 2085 dbSNP
rs555169470 2092 dbSNP
rs1211663435 2100 dbSNP
rs927092794 2103 dbSNP
rs973911212 2110 dbSNP
rs935943416 2112 dbSNP
rs1023202571 2113 dbSNP
rs1284882832 2120 dbSNP
rs990432009 2120 dbSNP
rs1348666348 2126 dbSNP
rs969908517 2139 dbSNP
rs779457093 2143 dbSNP
rs576686510 2149 dbSNP
rs1276147846 2150 dbSNP
rs1370580567 2166 dbSNP
rs1301695180 2168 dbSNP
rs1437744965 2170 dbSNP
rs866242443 2171 dbSNP
rs1318283496 2175 dbSNP
rs1399563319 2176 dbSNP
rs1040509467 2190 dbSNP
rs1217872150 2195 dbSNP
rs190565454 2196 dbSNP
rs7605 2201 dbSNP
rs1454447071 2202 dbSNP
rs988554668 2212 dbSNP
rs1191450688 2215 dbSNP
rs1050628700 2225 dbSNP
rs887908803 2227 dbSNP
rs1192477090 2235 dbSNP
rs1242587300 2238 dbSNP
rs1006513852 2244 dbSNP
rs772423671 2250 dbSNP
rs1378297460 2257 dbSNP
rs1036565780 2268 dbSNP
rs1479083510 2271 dbSNP
rs1445261430 2277 dbSNP
rs896857100 2283 dbSNP
rs1280786782 2285 dbSNP
rs913956957 2288 dbSNP
rs1347410559 2292 dbSNP
rs1171035305 2295 dbSNP
rs773505680 2298 dbSNP
rs1278464888 2307 dbSNP
rs993777970 2308 dbSNP
rs1433811906 2309 dbSNP
rs747251967 2335 dbSNP
rs11807657 2339 dbSNP
rs866079400 2345 dbSNP
rs545884433 2346 dbSNP
rs1380467438 2347 dbSNP
rs544942553 2351 dbSNP
rs1034187217 2353 dbSNP
rs575875658 2357 dbSNP
rs1431347088 2360 dbSNP
rs899995281 2361 dbSNP
rs990099680 2362 dbSNP
rs1272692213 2372 dbSNP
rs913137609 2374 dbSNP
rs559901323 2377 dbSNP
rs1241279034 2382 dbSNP
rs1474382351 2382 dbSNP
rs1288609931 2386 dbSNP
rs763740673 2387 dbSNP
rs976098510 2388 dbSNP
rs1051250036 2397 dbSNP
rs571982068 2398 dbSNP
rs1268750038 2400 dbSNP
rs796302486 2408 dbSNP
rs932092632 2410 dbSNP
rs1308346458 2413 dbSNP
rs1272741684 2415 dbSNP
rs1213241054 2421 dbSNP
rs542491873 2425 dbSNP
rs1359013382 2427 dbSNP
rs560884282 2427 dbSNP
rs1294446453 2431 dbSNP
rs1050938138 2433 dbSNP
rs181999887 2440 dbSNP
rs1015695323 2442 dbSNP
rs753379780 2447 dbSNP
rs549614104 2448 dbSNP
rs1169467216 2469 dbSNP
rs1408013352 2473 dbSNP
rs565335942 2476 dbSNP
rs1158961754 2478 dbSNP
rs14212 2493 dbSNP
rs898103322 2494 dbSNP
rs969876717 2495 dbSNP
rs1157896017 2500 dbSNP
rs1333782451 2508 dbSNP
rs1391422471 2509 dbSNP
rs547738602 2515 dbSNP
rs1002710129 2523 dbSNP
rs771280842 2523 dbSNP
rs1184525890 2525 dbSNP
rs565958743 2540 dbSNP
rs1323348277 2545 dbSNP
rs1202782561 2546 dbSNP
rs1453714924 2548 dbSNP
rs1274296122 2550 dbSNP
rs1233182718 2555 dbSNP
rs1333387399 2563 dbSNP
rs1290899961 2570 dbSNP
rs61995896 2571 dbSNP
rs759638778 2579 dbSNP
rs1373534423 2586 dbSNP
rs988133169 2593 dbSNP
rs769676142 2605 dbSNP
rs1396381499 2606 dbSNP
rs1326380630 2607 dbSNP
rs1001329309 2617 dbSNP
rs1161393413 2620 dbSNP
rs1407475469 2622 dbSNP
rs1175721805 2626 dbSNP
rs1479154689 2642 dbSNP
rs1253983085 2644 dbSNP
rs1034503805 2651 dbSNP
rs548882827 2653 dbSNP
rs140274317 2658 dbSNP
rs1020104272 2662 dbSNP
rs1467516327 2665 dbSNP
rs8917 2671 dbSNP
rs1334352884 2679 dbSNP
rs1238834825 2683 dbSNP
rs1317012770 2684 dbSNP
rs1305735154 2693 dbSNP
rs1221686789 2704 dbSNP
rs747032222 2706 dbSNP
rs768445123 2708 dbSNP
rs975962700 2722 dbSNP
rs923300193 2726 dbSNP
rs953495939 2731 dbSNP
rs1044980456 2741 dbSNP
rs541380648 2743 dbSNP
rs1290590876 2744 dbSNP
rs986261693 2746 dbSNP
rs868053847 2750 dbSNP
rs940249372 2755 dbSNP
rs1037315874 2756 dbSNP
rs8623 2758 dbSNP
rs1472948693 2759 dbSNP
rs185284937 2772 dbSNP
rs1036503840 2773 dbSNP
rs1452966009 2775 dbSNP
rs1250395337 2779 dbSNP
rs1180848642 2780 dbSNP
rs1044128086 2785 dbSNP
rs770931859 2790 dbSNP
rs949643502 2793 dbSNP
rs774571558 2805 dbSNP
rs145325991 2814 dbSNP
rs1162101764 2816 dbSNP
rs12316 2822 dbSNP
rs1465752811 2828 dbSNP
rs571693869 2835 dbSNP
rs1297515695 2838 dbSNP
rs1332923366 2843 dbSNP
rs1382676750 2848 dbSNP
rs1361265141 2856 dbSNP
rs936989010 2863 dbSNP
rs1035539622 2864 dbSNP
rs1393946829 2869 dbSNP
rs1391138354 2877 dbSNP
rs775689415 2883 dbSNP
rs1433149844 2887 dbSNP
rs1055570289 2888 dbSNP
rs1375109915 2889 dbSNP
rs1171642568 2895 dbSNP
rs1342720886 2903 dbSNP
rs1190795644 2913 dbSNP
rs542256809 2913 dbSNP
rs892894840 2927 dbSNP
rs1021574795 2928 dbSNP
rs1318661698 2938 dbSNP
rs1200655993 2939 dbSNP
rs1249785919 2950 dbSNP
rs1345344762 2956 dbSNP
rs1011301871 2964 dbSNP
rs979467520 2968 dbSNP
rs554441851 2972 dbSNP
rs1306789224 2974 dbSNP
rs1480448509 2979 dbSNP
rs1020136868 2980 dbSNP
rs921320806 2980 dbSNP
rs1416656512 2982 dbSNP
rs902979244 2993 dbSNP
rs761296207 3009 dbSNP
rs954148494 3020 dbSNP
rs1312395339 3021 dbSNP
rs764724307 3023 dbSNP
rs575937097 3024 dbSNP
rs1417136398 3025 dbSNP
rs545631216 3030 dbSNP
rs1030650727 3031 dbSNP
rs543565624 3032 dbSNP
rs1172225259 3036 dbSNP
rs986557140 3038 dbSNP
rs1167770701 3044 dbSNP
rs1016238825 3048 dbSNP
rs564951647 3049 dbSNP
rs940237536 3055 dbSNP
rs1461182226 3058 dbSNP
rs1303122119 3059 dbSNP
rs1404791707 3066 dbSNP
rs1413365456 3068 dbSNP
rs865779690 3078 dbSNP
rs972085526 3081 dbSNP
rs12071420 3085 dbSNP
rs949544464 3090 dbSNP
rs982411871 3108 dbSNP
rs189891170 3109 dbSNP
rs1293531703 3115 dbSNP
rs148979779 3116 dbSNP
rs1329831893 3127 dbSNP
rs1391136165 3128 dbSNP
rs1394760525 3131 dbSNP
rs1234219577 3147 dbSNP
rs905586660 3161 dbSNP
rs938252393 3175 dbSNP
rs1055880124 3177 dbSNP
rs892771644 3181 dbSNP
rs1163507379 3187 dbSNP
rs1208528703 3192 dbSNP
rs1471524991 3203 dbSNP
rs1256661495 3215 dbSNP
rs1182107195 3222 dbSNP
rs113581119 3229 dbSNP
rs891613094 3235 dbSNP
rs1041485777 3238 dbSNP
rs1010075515 3241 dbSNP
rs747217541 3242 dbSNP
rs1272480029 3245 dbSNP
rs903048195 3246 dbSNP
rs761409734 3250 dbSNP
rs1030142200 3252 dbSNP
rs1352968558 3256 dbSNP
rs1280267496 3269 dbSNP
rs767247690 3272 dbSNP
rs531530393 3273 dbSNP
rs755640690 3278 dbSNP
rs1007444329 3284 dbSNP
rs1334268362 3287 dbSNP
rs1379058708 3293 dbSNP
rs1016683555 3303 dbSNP
rs963347988 3310 dbSNP
rs868400656 3312 dbSNP
rs148155475 3318 dbSNP
rs750144708 3323 dbSNP
rs1370821549 3327 dbSNP
rs1361659580 3334 dbSNP
rs970892279 3335 dbSNP
rs1386465522 3337 dbSNP
rs141847648 3345 dbSNP
rs1452590474 3346 dbSNP
rs1378115704 3353 dbSNP
rs926782077 3355 dbSNP
rs1195195560 3359 dbSNP
rs1454575275 3361 dbSNP
rs938270078 3362 dbSNP
rs989709530 3366 dbSNP
rs986840094 3367 dbSNP
rs779937837 3368 dbSNP
rs1285035716 3372 dbSNP
rs1287691405 3378 dbSNP
rs1351704828 3382 dbSNP
rs1282744040 3389 dbSNP
rs368920044 3390 dbSNP
rs1433499603 3396 dbSNP
rs1327589201 3413 dbSNP
rs1318343939 3418 dbSNP
rs1381167331 3424 dbSNP
rs1041512097 3425 dbSNP
rs1387469966 3431 dbSNP
rs1358193899 3432 dbSNP
rs924375979 3435 dbSNP
rs10753763 3442 dbSNP
rs1435006191 3444 dbSNP
rs1394222358 3450 dbSNP
rs1052042546 3455 dbSNP
rs888917358 3456 dbSNP
rs1170661078 3458 dbSNP
rs1476341850 3459 dbSNP
rs920143022 3472 dbSNP
rs931600159 3475 dbSNP
rs535255299 3480 dbSNP
rs553578038 3482 dbSNP
rs1259813566 3486 dbSNP
rs76775177 3489 dbSNP
rs1217852648 3490 dbSNP
rs1240322337 3498 dbSNP
rs535801366 3501 dbSNP
rs1347479036 3509 dbSNP
rs1276932076 3513 dbSNP
rs1216703796 3514 dbSNP
rs1340598033 3518 dbSNP
rs781112567 3522 dbSNP
rs1026247814 3523 dbSNP
rs371184482 3526 dbSNP
rs891553642 3534 dbSNP
rs1337748820 3538 dbSNP
rs768585524 3538 dbSNP
rs1415017741 3543 dbSNP
rs970798584 3548 dbSNP
rs748021375 3550 dbSNP
rs1411451220 3554 dbSNP
rs35065671 3555 dbSNP
rs879798496 3560 dbSNP
rs1476828236 3580 dbSNP
rs773211365 3584 dbSNP
rs1381301045 3600 dbSNP
rs1028900920 3606 dbSNP
rs139012766 3611 dbSNP
rs1207018261 3613 dbSNP
rs990173763 3618 dbSNP
rs1291712742 3620 dbSNP
rs915478678 3631 dbSNP
rs181105938 3641 dbSNP
rs1217307556 3644 dbSNP
rs747338252 3650 dbSNP
rs10753764 3651 dbSNP
rs1233379788 3652 dbSNP
rs867080672 3655 dbSNP
rs1295396386 3656 dbSNP
rs1282098626 3659 dbSNP
rs558839584 3661 dbSNP
rs186660095 3667 dbSNP
rs1354874187 3676 dbSNP
rs1027136020 3685 dbSNP
rs910413591 3690 dbSNP
rs1165663284 3704 dbSNP
rs943201132 3708 dbSNP
rs541258885 3711 dbSNP
rs1037603814 3713 dbSNP
rs1411837735 3717 dbSNP
rs191445959 3720 dbSNP
rs183602418 3726 dbSNP
rs10800323 3727 dbSNP
rs1197212632 3734 dbSNP
rs1047727305 3735 dbSNP
rs1274355833 3742 dbSNP
rs938295632 3745 dbSNP
rs906494511 3746 dbSNP
rs1004074927 3747 dbSNP
rs746002092 3763 dbSNP
rs1320615317 3774 dbSNP
rs1287188979 3777 dbSNP
rs1033760812 3778 dbSNP
rs1308186724 3781 dbSNP
rs1466797746 3795 dbSNP
rs992508595 3804 dbSNP
rs552825779 3806 dbSNP
rs188493549 3808 dbSNP
rs1011093346 3811 dbSNP
rs1022444255 3812 dbSNP
rs1407540439 3814 dbSNP
rs945799935 3816 dbSNP
rs1175875111 3817 dbSNP
rs1455877196 3833 dbSNP
rs769919304 3837 dbSNP
rs531207025 3840 dbSNP
rs931856423 3844 dbSNP
rs978301910 3849 dbSNP
rs924314042 3852 dbSNP
rs1217384612 3862 dbSNP
rs1424910668 3866 dbSNP
rs954397116 3869 dbSNP
rs1392365455 3874 dbSNP
rs1237633750 3875 dbSNP
rs1349759443 3876 dbSNP
rs775372614 3881 dbSNP
rs1461022513 3887 dbSNP
rs143146901 3893 dbSNP
rs1386140303 3905 dbSNP
rs1365479945 3909 dbSNP
rs910285371 3910 dbSNP
rs1431572255 3916 dbSNP
rs1360084170 3918 dbSNP
rs943091772 3921 dbSNP
rs1402757814 3932 dbSNP
rs1008152873 3933 dbSNP
rs973225434 3936 dbSNP
rs920395749 3939 dbSNP
rs1175880120 3950 dbSNP
rs1277559321 3953 dbSNP
rs929229532 3953 dbSNP
rs1431930933 3956 dbSNP
rs1372455243 3957 dbSNP
rs1041069522 3959 dbSNP
rs1047636284 3961 dbSNP
rs1228806077 3964 dbSNP
rs1295125065 3966 dbSNP
rs1331994544 3967 dbSNP
rs1212577392 3975 dbSNP
rs564840623 3976 dbSNP
rs1261902380 3977 dbSNP
rs1439227953 3977 dbSNP
rs1202790636 3978 dbSNP
rs1232682107 3980 dbSNP
rs1483819486 3982 dbSNP
rs1190654270 3984 dbSNP
rs528675950 3985 dbSNP
rs1416397276 3986 dbSNP
rs897170665 3989 dbSNP
rs192283907 3990 dbSNP
rs775729518 3995 dbSNP
rs939354115 4002 dbSNP
rs994249066 4010 dbSNP
rs1055511388 4014 dbSNP
rs1280770217 4015 dbSNP
rs1474892559 4015 dbSNP
rs565398718 4023 dbSNP
rs1310292190 4030 dbSNP
rs1421834312 4038 dbSNP
rs1408442923 4039 dbSNP
rs535960751 4047 dbSNP
rs1022472437 4052 dbSNP
rs1215185820 4053 dbSNP
rs147481157 4073 dbSNP
rs569285311 4074 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000474859.1 | 3UTR | UUUUUACUUUUUACUGGGAAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
275 hsa-miR-548ac Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055863 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT074959 LEPROT leptin receptor overlapping transcript 2 2
MIRT076823 SUZ12 SUZ12 polycomb repressive complex 2 subunit 2 4
MIRT078708 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT099610 ID4 inhibitor of DNA binding 4, HLH protein 2 4
MIRT103362 CBX3 chromobox 3 2 2
MIRT111801 MPZL1 myelin protein zero like 1 2 2
MIRT114050 AKAP11 A-kinase anchoring protein 11 2 12
MIRT133719 SKI SKI proto-oncogene 2 2
MIRT136817 NHLRC3 NHL repeat containing 3 2 6
MIRT149926 LDLR low density lipoprotein receptor 2 2
MIRT166915 TNPO1 transportin 1 2 2
MIRT168142 SOX4 SRY-box 4 2 10
MIRT190787 STRN3 striatin 3 2 4
MIRT207471 RMND5A required for meiotic nuclear division 5 homolog A 2 2
MIRT250951 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT271993 ARF1 ADP ribosylation factor 1 2 4
MIRT282618 IGF1R insulin like growth factor 1 receptor 2 8
MIRT294153 ZNF845 zinc finger protein 845 2 2
MIRT309060 C4ORF3 chromosome 4 open reading frame 3 2 2
MIRT318548 SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein 2 2
MIRT319752 LUC7L2 LUC7 like 2, pre-mRNA splicing factor 2 2
MIRT331324 TM9SF3 transmembrane 9 superfamily member 3 2 2
MIRT337204 TOMM20 translocase of outer mitochondrial membrane 20 2 6
MIRT346145 ALYREF Aly/REF export factor 2 2
MIRT347727 LSM14A LSM14A, mRNA processing body assembly factor 2 2
MIRT350503 MRGBP MRG domain binding protein 2 6
MIRT356409 RBPJ recombination signal binding protein for immunoglobulin kappa J region 2 2
MIRT357986 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT374399 M6PR mannose-6-phosphate receptor, cation dependent 2 6
MIRT442727 TMEM158 transmembrane protein 158 (gene/pseudogene) 2 2
MIRT443411 HMX3 H6 family homeobox 3 2 2
MIRT444408 FRMD5 FERM domain containing 5 2 2
MIRT444469 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT444650 HSBP1 heat shock factor binding protein 1 2 2
MIRT444861 EXD2 exonuclease 3'-5' domain containing 2 2 2
MIRT445685 TNFSF15 TNF superfamily member 15 2 2
MIRT446001 CD1D CD1d molecule 2 2
MIRT446074 RABIF RAB interacting factor 2 2
MIRT446308 ACSL3 acyl-CoA synthetase long chain family member 3 2 2
MIRT446432 ABHD2 abhydrolase domain containing 2 2 2
MIRT447269 C3orf30 chromosome 3 open reading frame 30 2 2
MIRT447759 TMCC3 transmembrane and coiled-coil domain family 3 2 2
MIRT448161 P2RY10 purinergic receptor P2Y10 2 2
MIRT449049 ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif 5 2 2
MIRT449275 PALM2 paralemmin 2 2 2
MIRT450122 IMP3 IMP3, U3 small nucleolar ribonucleoprotein 2 2
MIRT450155 GABRB3 gamma-aminobutyric acid type A receptor beta3 subunit 2 2
MIRT451289 ZNF101 zinc finger protein 101 2 2
MIRT459253 ADRBK1 G protein-coupled receptor kinase 2 2 2
MIRT462554 NUDT19 nudix hydrolase 19 2 2
MIRT464470 UGCG UDP-glucose ceramide glucosyltransferase 2 2
MIRT465120 TSC22D2 TSC22 domain family member 2 2 4
MIRT467996 SKIL SKI like proto-oncogene 2 2
MIRT468718 SDC4 syndecan 4 2 2
MIRT469269 RHOB ras homolog family member B 2 2
MIRT470675 POLR2D RNA polymerase II subunit D 2 4
MIRT470723 POGK pogo transposable element derived with KRAB domain 2 2
MIRT471438 PDIA6 protein disulfide isomerase family A member 6 2 2
MIRT471502 PDE4D phosphodiesterase 4D 2 4
MIRT471988 NR2F2 nuclear receptor subfamily 2 group F member 2 2 4
MIRT472386 NEK7 NIMA related kinase 7 2 2
MIRT475028 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT479411 CDKN1B cyclin dependent kinase inhibitor 1B 2 10
MIRT480514 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT481700 AR androgen receptor 2 2
MIRT482543 ACTB actin beta 2 4
MIRT482627 ABCE1 ATP binding cassette subfamily E member 1 2 2
MIRT484725 INHBA inhibin beta A subunit 2 12
MIRT487778 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT491883 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT494653 ARNTL aryl hydrocarbon receptor nuclear translocator like 2 2
MIRT497366 SF1 splicing factor 1 2 2
MIRT499156 HSPA1B heat shock protein family A (Hsp70) member 1B 2 8
MIRT502830 CELSR3 cadherin EGF LAG seven-pass G-type receptor 3 2 6
MIRT502944 CDC37L1 cell division cycle 37 like 1 2 8
MIRT503942 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT504235 MYO6 myosin VI 2 2
MIRT504453 MC2R melanocortin 2 receptor 2 2
MIRT506022 PURA purine rich element binding protein A 2 2
MIRT508028 BCAT1 branched chain amino acid transaminase 1 2 4
MIRT508299 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 4
MIRT511515 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT512307 AMER1 APC membrane recruitment protein 1 2 6
MIRT514565 XRCC3 X-ray repair cross complementing 3 2 4
MIRT515657 MYBPC1 myosin binding protein C, slow type 2 2
MIRT518429 SSU72 SSU72 homolog, RNA polymerase II CTD phosphatase 2 2
MIRT520378 UBE2D1 ubiquitin conjugating enzyme E2 D1 2 4
MIRT521604 PSMA2 proteasome subunit alpha 2 2 4
MIRT521725 PPP3R1 protein phosphatase 3 regulatory subunit B, alpha 2 4
MIRT522579 MBNL3 muscleblind like splicing regulator 3 2 4
MIRT522731 LRRC55 leucine rich repeat containing 55 2 8
MIRT524547 CDC5L cell division cycle 5 like 2 4
MIRT525371 SYNM synemin 2 2
MIRT526489 PPIA peptidylprolyl isomerase A 2 4
MIRT527197 CLASP1 cytoplasmic linker associated protein 1 2 2
MIRT527285 FBLN2 fibulin 2 2 2
MIRT527383 MGARP mitochondria localized glutamic acid rich protein 2 2
MIRT527409 SMU1 DNA replication regulator and spliceosomal factor 2 6
MIRT527454 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT528348 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529104 ZNF100 zinc finger protein 100 2 2
MIRT529317 ATRNL1 attractin like 1 2 2
MIRT529328 PDE5A phosphodiesterase 5A 2 2
MIRT529750 SEL1L SEL1L ERAD E3 ligase adaptor subunit 2 2
MIRT530277 MKRN3 makorin ring finger protein 3 2 2
MIRT531415 TMEM18 transmembrane protein 18 2 2
MIRT532544 WDR13 WD repeat domain 13 2 2
MIRT533245 VKORC1L1 vitamin K epoxide reductase complex subunit 1 like 1 2 2
MIRT534659 RNF20 ring finger protein 20 2 2
MIRT534818 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT537492 FAM169A family with sequence similarity 169 member A 2 2
MIRT538778 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT539122 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT540964 SLC25A43 solute carrier family 25 member 43 2 2
MIRT541403 CDC27 cell division cycle 27 2 2
MIRT543353 ZNF829 zinc finger protein 829 2 2
MIRT543623 MFAP3 microfibril associated protein 3 2 2
MIRT543649 YY2 YY2 transcription factor 2 2
MIRT544945 SNCB synuclein beta 2 2
MIRT545327 SPC25 SPC25, NDC80 kinetochore complex component 2 2
MIRT546094 VEZF1 vascular endothelial zinc finger 1 2 2
MIRT548605 DCUN1D3 defective in cullin neddylation 1 domain containing 3 2 2
MIRT548638 DAZAP1 DAZ associated protein 1 2 4
MIRT550318 ZNF681 zinc finger protein 681 2 2
MIRT550412 SLC29A1 solute carrier family 29 member 1 (Augustine blood group) 2 4
MIRT551034 SPPL3 signal peptide peptidase like 3 2 2
MIRT551602 HDGFRP2 HDGF like 2 2 2
MIRT552064 ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 2 4
MIRT552803 YAF2 YY1 associated factor 2 2 2
MIRT553274 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT553303 TSPAN3 tetraspanin 3 2 2
MIRT553570 NPM3 nucleophosmin/nucleoplasmin 3 2 2
MIRT554844 RECK reversion inducing cysteine rich protein with kazal motifs 2 2
MIRT556069 MTF2 metal response element binding transcription factor 2 2 4
MIRT556898 ITGA2 integrin subunit alpha 2 2 2
MIRT558680 CNIH cornichon family AMPA receptor auxiliary protein 1 1 1
MIRT559032 C20orf24 chromosome 20 open reading frame 24 2 2
MIRT559108 C18orf25 chromosome 18 open reading frame 25 2 2
MIRT559864 GSKIP GSK3B interacting protein 2 2
MIRT560868 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT562268 GRB2 growth factor receptor bound protein 2 2 2
MIRT562419 EIF2S2 eukaryotic translation initiation factor 2 subunit beta 2 2
MIRT562652 ARID1A AT-rich interaction domain 1A 2 4
MIRT563771 ZNF678 zinc finger protein 678 2 2
MIRT564279 DEPDC1B DEP domain containing 1B 2 2
MIRT565253 TRA2B transformer 2 beta homolog 2 4
MIRT565307 TMEM64 transmembrane protein 64 2 2
MIRT566034 RFX1 regulatory factor X1 2 2
MIRT566714 MTMR3 myotubularin related protein 3 2 2
MIRT568087 CELF2 CUGBP Elav-like family member 2 2 2
MIRT568417 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT568766 MYBL1 MYB proto-oncogene like 1 2 2
MIRT569516 THYN1 thymocyte nuclear protein 1 2 2
MIRT571823 PHF19 PHD finger protein 19 2 2
MIRT571995 HOXA9 homeobox A9 2 2
MIRT572174 CELF1 CUGBP Elav-like family member 1 2 2
MIRT572637 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT573756 KHSRP KH-type splicing regulatory protein 2 2
MIRT574089 CCDC132 VPS50, EARP/GARPII complex subunit 2 6
MIRT574311 CMTM6 CKLF like MARVEL transmembrane domain containing 6 2 2
MIRT574512 PSAT1 phosphoserine aminotransferase 1 2 2
MIRT574559 NRBF2 nuclear receptor binding factor 2 2 2
MIRT576686 H6pd hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) 2 2
MIRT608491 NKTR natural killer cell triggering receptor 2 6
MIRT608640 ATP9A ATPase phospholipid transporting 9A (putative) 2 6
MIRT609231 TMEM189 transmembrane protein 189 2 2
MIRT609561 TCEAL4 transcription elongation factor A like 4 2 2
MIRT610193 FAM49A family with sequence similarity 49 member A 2 2
MIRT610681 SYT2 synaptotagmin 2 2 4
MIRT610725 NAV2 neuron navigator 2 2 2
MIRT610813 SGOL2 shugoshin 2 2 2
MIRT610993 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 2
MIRT611030 KCNK10 potassium two pore domain channel subfamily K member 10 2 2
MIRT611339 SLC2A4 solute carrier family 2 member 4 2 2
MIRT611511 HIPK3 homeodomain interacting protein kinase 3 2 2
MIRT611638 EDIL3 EGF like repeats and discoidin domains 3 2 2
MIRT611856 RPL3L ribosomal protein L3 like 2 2
MIRT611905 TRPC3 transient receptor potential cation channel subfamily C member 3 2 2
MIRT612047 PCNXL2 pecanex homolog 2 2 6
MIRT612340 TRIB2 tribbles pseudokinase 2 2 2
MIRT612870 INO80C INO80 complex subunit C 2 2
MIRT613555 AMPD3 adenosine monophosphate deaminase 3 2 2
MIRT614490 MMS22L MMS22 like, DNA repair protein 2 2
MIRT615098 BRD4 bromodomain containing 4 2 2
MIRT616228 PTPN11 protein tyrosine phosphatase, non-receptor type 11 2 2
MIRT617220 GDPGP1 GDP-D-glucose phosphorylase 1 2 2
MIRT617884 ESR1 estrogen receptor 1 2 2
MIRT618344 CD59 CD59 molecule (CD59 blood group) 2 2
MIRT620264 RAPH1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 2 2
MIRT620660 CCDC108 cilia and flagella associated protein 65 2 2
MIRT620761 CCR5 C-C motif chemokine receptor 5 (gene/pseudogene) 2 2
MIRT621416 TXNL1 thioredoxin like 1 2 2
MIRT621676 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 2
MIRT622231 SLC25A51 solute carrier family 25 member 51 2 2
MIRT622377 SALL1 spalt like transcription factor 1 2 2
MIRT622404 RRAGC Ras related GTP binding C 2 2
MIRT622494 RC3H1 ring finger and CCCH-type domains 1 2 2
MIRT623064 NRXN1 neurexin 1 2 2
MIRT623295 MAX MYC associated factor X 2 2
MIRT623691 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT623930 FMNL3 formin like 3 2 2
MIRT623984 FAM208A family with sequence similarity 208 member A 2 2
MIRT624513 C7orf55-LUC7L2 C7orf55-LUC7L2 readthrough 2 2
MIRT624668 ARID4A AT-rich interaction domain 4A 2 2
MIRT624756 ANGPTL2 angiopoietin like 2 2 2
MIRT624949 MARCH2 membrane associated ring-CH-type finger 2 2 2
MIRT625968 RNF2 ring finger protein 2 2 2
MIRT626415 KIAA2018 upstream transcription factor family member 3 2 2
MIRT626882 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627157 ZNF652 zinc finger protein 652 2 2
MIRT627613 SFT2D2 SFT2 domain containing 2 2 2
MIRT627744 RAP2B RAP2B, member of RAS oncogene family 2 4
MIRT627808 PTEN phosphatase and tensin homolog 2 2
MIRT627820 PRR3 proline rich 3 2 2
MIRT630935 UNC93A unc-93 homolog A 2 2
MIRT635930 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638301 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT638437 PNRC1 proline rich nuclear receptor coactivator 1 2 2
MIRT640281 TCF24 transcription factor 24 2 2
MIRT641979 PCMTD2 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 2 2
MIRT644179 GIN1 gypsy retrotransposon integrase 1 2 2
MIRT644439 VDR vitamin D receptor 2 2
MIRT644974 STEAP4 STEAP4 metalloreductase 2 2
MIRT647653 B3GALNT1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 2 2
MIRT648702 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT650120 ZCCHC9 zinc finger CCHC-type containing 9 2 2
MIRT650505 UFM1 ubiquitin fold modifier 1 2 2
MIRT650701 CLNK cytokine dependent hematopoietic cell linker 2 2
MIRT651083 ZNF518B zinc finger protein 518B 2 4
MIRT653644 SLC30A1 solute carrier family 30 member 1 2 2
MIRT653788 SIX4 SIX homeobox 4 2 2
MIRT656773 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT656949 KIAA1456 KIAA1456 2 2
MIRT656981 KDM5A lysine demethylase 5A 2 2
MIRT657225 TOR1AIP2 torsin 1A interacting protein 2 2 4
MIRT657706 GPC5 glypican 5 2 2
MIRT660107 BTBD3 BTB domain containing 3 2 2
MIRT662817 C9orf64 chromosome 9 open reading frame 64 2 2
MIRT665889 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT668140 GINS2 GINS complex subunit 2 2 2
MIRT668566 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT669718 AAGAB alpha and gamma adaptin binding protein 2 2
MIRT685693 TRIM45 tripartite motif containing 45 2 2
MIRT686579 TMPPE transmembrane protein with metallophosphoesterase domain 2 2
MIRT687491 NHLRC2 NHL repeat containing 2 2 2
MIRT687805 KCNJ15 potassium voltage-gated channel subfamily J member 15 2 2
MIRT687968 HHIP hedgehog interacting protein 2 2
MIRT689487 SCIMP SLP adaptor and CSK interacting membrane protein 2 2
MIRT689595 NUDT7 nudix hydrolase 7 2 2
MIRT690501 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT692290 XRN2 5'-3' exoribonuclease 2 2 2
MIRT693060 KIAA1324 KIAA1324 2 2
MIRT697443 ZFHX3 zinc finger homeobox 3 2 2
MIRT698475 TJP1 tight junction protein 1 2 2
MIRT699033 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699785 SEMA4D semaphorin 4D 2 2
MIRT701463 NEO1 neogenin 1 2 2
MIRT701869 MRO maestro 2 2
MIRT702158 MAP3K1 mitogen-activated protein kinase kinase kinase 1 2 2
MIRT703750 FAM126B family with sequence similarity 126 member B 2 2
MIRT704277 DGS2 DiGeorge syndrome/velocardiofacial syndrome complex 2 2 2
MIRT707956 PGM3 phosphoglucomutase 3 2 2
MIRT712747 LAMTOR1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 2 2
MIRT712848 RHOA ras homolog family member A 2 2
MIRT712954 CCBE1 collagen and calcium binding EGF domains 1 2 2
MIRT713119 U2SURP U2 snRNP associated SURP domain containing 2 2
MIRT713148 PKIA cAMP-dependent protein kinase inhibitor alpha 2 2
MIRT715394 TADA3 transcriptional adaptor 3 2 2
MIRT715475 NEGR1 neuronal growth regulator 1 2 2
MIRT715535 G2E3 G2/M-phase specific E3 ubiquitin protein ligase 2 2
MIRT721159 MYOCD myocardin 2 2
MIRT722719 ZNF460 zinc finger protein 460 2 2
MIRT723130 GTF2F2 general transcription factor IIF subunit 2 2 2
MIRT723259 TMLHE trimethyllysine hydroxylase, epsilon 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-54 Nicotine approved 89594 Microarray Caenorhabditis elegans 23765240 2013 up-regualted
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548ac Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-548ac Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-548ac Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-548ac Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-548ac Paclitaxel 36314 NSC125973 approved sensitive cell line (HS578T)
hsa-miR-548ac Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-548ac Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-548ac Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-548ac Tamoxifen+Fulvestrant resistant cell line (LCC9)
hsa-miR-548ac Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)

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