miRTarBase - #MIRT111808


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pre-miRNA Information
pre-miRNA hsa-mir-548am   
Genomic Coordinates chrX: 16627012 - 16627085
Description Homo sapiens miR-548am stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548am-5p
Sequence 10| AAAAGUAAUUGCGGUUUUUGCC |31
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 3 X - 16627074 29233923 MiREDiBase
A-to-I 4 X - 16627073 29233923 MiREDiBase
A-to-I 7 X - 16627070 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs181147953 1 dbSNP
rs1023899452 12 dbSNP
rs1319380894 14 dbSNP
rs768483765 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol MPZL1   
Synonyms MPZL1b, PZR, PZR1b, PZRa, PZRb
Description myelin protein zero like 1
Transcript NM_024569   
Other Transcripts NM_003953 , NM_001146191   
Expression
Putative miRNA Targets on MPZL1
3'UTR of MPZL1
(miRNA target sites are highlighted)		 
>MPZL1|NM_024569|3'UTR
   1 ACCACTCCGGCGGACATCACAGTGACAAGATTAACAAGTCAGAGTCTGTGGTGTATGCGGATATCCGAAAGAATTAAGAG
  81 AATACCTAGAACATATCCTCAGCAAGAAACAAAACCAAACTGGACTCTCGTGCAGAAAATGTAGCCCATTACCACATGTA
 161 GCCTTGGAGACCCAGGCAAGGACAAGTACACGTGTACTCACAGAGGGAGAGAAAGATGTGTACAAAGGATATGTATAAAT
 241 ATTCTATTTAGTCATCCTGATATGAGGAGCCAGTGTTGCATGATGAAAAGATGGTATGATTCTACATATGTACCCATTGT
 321 CTTGCTGTTTTTGTACTTTCTTTTCAGGTCATTTACAATTGGGAGATTTCAGAAACATTCCTTTCACCATCATTTAGAAA
 401 TGGTTTGCCTTAATGGAGACAATAGCAGATCCTGTAGTATTTCCAGTAGACATGGCCTTTTAATCTAAGGGCTTAAGACT
 481 GATTAGTCTTAGCATTTACTGTAGTTGGAGGATGGAGATGCTATGATGGAAGCATACCCAGGGTGGCCTTTAGCACAGTA
 561 TCAGTACCATTTATTTGTCTGCCGCTTTTAAAAAATACCCATTGGCTATGCCACTTGAAAACAATTTGAGAAGTTTTTTT
 641 GAAGTTTTTCTCACTAAAATATGGGGCAATTGTTAGCCTTACATGTTGTGTAGACTTACTTTAAGTTTGCACCCTTGAAA
 721 TGTGTCATATCAATTTCTGGATTCATAATAGCAAGATTAGCAAAGGATAAATGCCGAAGGTCACTTCATTCTGGACACAG
 801 TTGGATCAATACTGATTAAGTAGAAAATCCAAGCTTTGCTTGAGAACTTTTGTAACGTGGAGAGTAAAAAGTATCGGTTT
 881 TATTCTTTGCTGATGTCCTTTCTGCTTGAAATAACAGTCACCATACAGCTAAAGGAGAGGAGTTTCTTTCCTTCTAAGTA
 961 GGCAGAAATGGTATCATTATGTTGCCGCTCTCCAATCTCCCAGAGCTCGCTCTCTAGAGAATCACCTTCTTTCGCTTTTT
1041 TTTTTTTTTTTGAGGTAGAGTCTCACTATGTTGCCCAGACTAGCCTTGAACTCTTGGGCTCAAGTGATTCTCCCTCCTCA
1121 GCCTCCCGAGTAGCTGGAACGAACTATAGTTGCACCACTGCAGCTGGCAAGAATCACCTTCTTTATAAAGCGTCAGTCAT
1201 GCTTCCAGCAAGAGGCAGCATCAGTCATGGCTTTATAACAGCTTCATGGTGCCTCAAAGACTGTTGAGGTTAATGAGAGC
1281 CTAGATTAGACAGTTTGGCTGTCCTTCCCTAAAACTTGTTTTCTCCTATTCACTACTCCCCACCGCACTTAAAATCTATG
1361 AGTTTTTACTTTTTACTGGGAATGGAAAGTGTGGTGAAGATCATTCAACACTTATGTTGTCATTTCTCCCATTTTCTGAA
1441 TTTTTTTTTAAATTTCCCCCCTTTTAAAATTGTTCGAAAGCCCACAGTTATGGAAAGAATTACTGTCTAGATGGTCTGCA
1521 GAACGTGTTTGGGGTGAGTGGGAGTGAGGGGCAATGTTACTTTTTCTCCCTGTAGTTTGGAGTCCATTATGAGCTGCTGC
1601 TTTTTCTTCTCATCTTGTCATCTTCTGGGGATGTTTGAAGGCTGAGTTCCAACAGAATTCACAAAGGGAATAAAACAGGA
1681 TTGAGATTTTGAGGTGTGCACAAGGTGGTAAGATAAAGGGCATATGAGCTTCAAAACTAATGCTGTTGCATACATGAAGC
1761 CTTTTGTTTTTTGAGGAGCTATTTTTGTTATTCTTGTAACGCTCCACCTTACATGCCACATCTGTGTGAGTCAACAGGGA
1841 TCAGGTTTGGTCACCACACATGTCTGAAGCTGGGCAGCGTCTGCTCTGTGTTCTGTGTGGAATGGAGAAAAAAACGCCTG
1921 CCCTGCTGCCTTCCATGTTCATAGGCCCAGCCCAAGAGAGTGACACACAGTGCTGGCCCTGAGACATTTCCACAAAGTGG
2001 TCAACTCTGCCTTGCATCCTAAAACTTTTTGGGCATCTATTTTGAAAACTATAGGAGCCTTTGGAAGGCCTCTTATGTTT
2081 GGAGGGGAAGGGTGTTGAGATTGTCACCATCCTTCAAGCTGAGACTCCTGGTGAGCCTTTGCCACCATGAAAACCACATA
2161 GCTGACCAGGGCTGTGCTTGAGGTACAGAGGACACACATTGTAGACAGGCCTGTGTCATGTTTCCTTACAGTCGTTTTTT
2241 ACAGAGAAAAGGGGCATTGTTTTTTCACTGCTTTCTCAACAGTTCCTGTGAATAAATGAAACATTTCGGAGCTCCCTGAG
2321 AGCAAGAGCCTTCACTTCTTCTTGCGGTGCCGGGACCATGTGTTGGTGAAGCTGGTGCTGTGGGGGCCACTCACTCGAAT
2401 GACACCTGGAGGCCTGTTCCTCCCTTACCACTCCCTTCCCCAGCCCGACTTCTTGGCCTCCTGCCCAACCAGACACCTCA
2481 AACTCTGTCAGTGCCCTGGCATTCTGGCAGAGAATCCTCACCAGTTCTCACCAACCTTCCCCCCAGGCAAGGGCAGCTGC
2561 CAGCATGGTGCTCTGCCAGGACAGGTTTCCCTGAAGGAAGCTGCTCACACTGAGATGAGCCTCTCAGGGCAGGACCTCTT
2641 CCCAAGCCCTGCACACCCACCCCTGCAGCCCTTTTGGCTCCCCTTTTCCCTGTGCCTCAGCACTCCTTTCCTGGTTGCAG
2721 ATAACGAACTAAGGTTGCCTAAAGGGCAGATCTGCCCTCTCCATGTCTTCGTCCTGGCAAACAGGGTCGTCTTAAAATTA
2801 TGCGCTAATTCTGTATGGGAGCACTCAAAAGGCATTACTTAGAGATTGAAATTTCAAACTATCTCTAGTTTTTCAATGGA
2881 AATATATCAGCTAGGGAAAAACCATCAAGCTCATTATTATTTTTTGATCTTCAGTTGTATTTTTGTGAATATTTTAATAC
2961 ATCTTTTTCAATTTCTGAATTGTGTTGTGTGCTCATTTTGACCAGAATAGAAAAAGAGATATGCCTTTCACTCATATCAT
3041 TCCAGCTACACCTGCCTTCTTTTCTTCAAAAATGCCGTCCGTGTGCCTGCTTCTGGGCCTTTGCACATGCTGTTCCCTGG
3121 GCCTGAAGCATGCCTTCTGCCAATATTCCTGTGGTTTGCTCTCTGACTTCCTTTAAGCCTCTGCTCAAATGTTACCTCCT
3201 CAGGGAGACCTTCTGTGATATATAAAAGAGCAAGCCCCCCACCCCACCGCCTCAGCCTTCCTGGCCCCCTCAGTTCTGCT
3281 CTAGTTACTCTATTTCTCTCCCTCTTTCCCAGTACACACTTGTCTGTTCTCCCGCATTAGAACATAGTTAACAAGAGACC
3361 AGAACCTTGCTGTTTTGTTCACTGCTCCGTCTGCAGTAAAGGGAACAGCACCTGGCACTTAGCTGCTCAATACATGTTAC
3441 GTGGATGGATGAGTAGGTGGAAGCATTCATCCATTCAGCAACCTACACTGAGAACAATCCTGTGCCAAGCACTGTGCTAA
3521 GCATAAGGAAACAAAACAAGACAAAGCTCCTCAAGGAGCTTGCCACAGGGTGGAGGTGACAGGTGACATGAATGGAAGTA
3601 ACTAGTAGTTACCAAATACTTGGTGTGAGCCAGGCACTTTGCATTTCTTTCTCTATTATTTCTGTGAGTTAACAGTAATT
3681 GTACTAATCTTAATCCCATTGTTTGAAAGATTATATGGCTTACCCAGGGCCACTTAGCTAATAAAGGAACAGAGAAGAGG
3761 GGCTGGGCCTGGGGCCGCTGTTTGATCCACAGCCTTGTTCCTAACCACTATGCCCTGTGGCCTCTCACACCAAAAGGAAG
3841 TACCAAACTGCTTCCTTACTCAAATAAATGTGCTGAAATGCAGTTGCAGTTTTCTCCCAGTCCCTTAGGAGCTGGTTAGA
3921 GAGTCCCTTAGGAACTTGAGAGGGTAGTGTAGTCTAGGTGGTAGGCACAGATGTCTGAGAGCTTTAACCTCAGTCTGGAA
4001 GACAATGTGGTGACTTAATTTGTTGAGAACTATGTTACAAATAATGTGTTACTAATAAAACATTGAGGCTTCGCAAAAAA
4081 AAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ccGUUUUUGGCGUU----AAUGAAAa 5'
            :|||| |: ::|    ||||||| 
Target 5' ctTAAAATCTATGAGTTTTTACTTTt 3'
 1348 - 1373 154.00 -6.20
2 
miRNA  3' ccguuUUUGGCGUU--AAUGAAAa 5'
               :|:  ||||  ||||||| 
Target 5' ggagtGAGGGGCAATGTTACTTTt 3'
 1541 - 1564 151.00 -9.20
3 
miRNA  3' ccGUUUUUGGCGUUAAUGAAaa 5'
            |||||:  || |||||||  
Target 5' ctCAAAAG--GC-ATTACTTag 3'
 2824 - 2842 143.00 -7.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM899102 12 COSMIC
COSM4024821 35 COSMIC
COSM8271431 41 COSMIC
COSM5844411 43 COSMIC
COSM7276808 47 COSMIC
COSM6714955 48 COSMIC
COSM8980040 56 COSMIC
COSM7767274 60 COSMIC
COSM9194860 60 COSMIC
COSM6024832 67 COSMIC
COSM8303229 68 COSMIC
COSM9573724 72 COSMIC
COSM8901498 75 COSMIC
COSN30114273 85 COSMIC
COSN30686939 94 COSMIC
COSN30184602 99 COSMIC
COSN30519159 101 COSMIC
COSN20045122 114 COSMIC
COSN13487639 131 COSMIC
COSN16249238 189 COSMIC
COSN31598351 192 COSMIC
COSN31524707 193 COSMIC
COSN31568256 245 COSMIC
COSN30534189 307 COSMIC
COSN31600536 330 COSMIC
COSN31561677 382 COSMIC
COSN30538237 482 COSMIC
COSN23014023 528 COSMIC
COSN27997381 601 COSMIC
COSN25580265 1192 COSMIC
COSN23865831 1400 COSMIC
COSN7183058 1775 COSMIC
COSN6007317 1798 COSMIC
COSN6007318 2308 COSMIC
COSN21116335 2346 COSMIC
COSN32007760 2801 COSMIC
COSN23692886 3058 COSMIC
COSN23687836 3059 COSMIC
COSN7183059 3078 COSMIC
COSN22537243 3777 COSMIC
COSN23347922 3842 COSMIC
COSN6007319 3905 COSMIC
COSN27683912 3977 COSMIC
COSN16119910 4007 COSMIC
COSN23531118 4030 COSMIC
COSN25498737 4065 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs139028868 9 dbSNP
rs528200726 10 dbSNP
rs1033782399 12 dbSNP
rs146869026 13 dbSNP
rs1414789609 14 dbSNP
rs1178023407 15 dbSNP
rs1013741663 16 dbSNP
rs34626910 30 dbSNP
rs1024755264 35 dbSNP
rs1433068744 36 dbSNP
rs776847529 37 dbSNP
rs761870685 39 dbSNP
rs769945676 45 dbSNP
rs773113947 55 dbSNP
rs375874838 59 dbSNP
rs200004895 60 dbSNP
rs1367220091 67 dbSNP
rs190661858 68 dbSNP
rs767364029 77 dbSNP
rs1306268462 78 dbSNP
rs752401822 80 dbSNP
rs1404374690 82 dbSNP
rs1259287139 87 dbSNP
rs377498586 90 dbSNP
rs753339952 93 dbSNP
rs1245743878 96 dbSNP
rs1476140674 97 dbSNP
rs1478183265 99 dbSNP
rs867739364 101 dbSNP
rs1187543450 102 dbSNP
rs1417043981 112 dbSNP
rs1409169024 122 dbSNP
rs748893161 123 dbSNP
rs780609532 127 dbSNP
rs747454174 128 dbSNP
rs769009844 129 dbSNP
rs781494254 130 dbSNP
rs569216690 131 dbSNP
rs1216394992 139 dbSNP
rs1270207062 141 dbSNP
rs1276492792 142 dbSNP
rs1435447819 146 dbSNP
rs976133874 154 dbSNP
rs536729212 155 dbSNP
rs553625512 156 dbSNP
rs923391451 162 dbSNP
rs1377152234 164 dbSNP
rs929442285 180 dbSNP
rs1047888327 192 dbSNP
rs1447845154 193 dbSNP
rs1357913424 206 dbSNP
rs1160675270 209 dbSNP
rs1331471593 210 dbSNP
rs141592237 213 dbSNP
rs1417604065 215 dbSNP
rs557934033 233 dbSNP
rs1447256440 247 dbSNP
rs150901710 249 dbSNP
rs770909210 255 dbSNP
rs1182222020 261 dbSNP
rs1320951679 263 dbSNP
rs78809449 264 dbSNP
rs1235601561 265 dbSNP
rs1206579652 267 dbSNP
rs1483395317 270 dbSNP
rs1273984164 271 dbSNP
rs1013299452 274 dbSNP
rs555445604 275 dbSNP
rs573675766 279 dbSNP
rs1228046655 292 dbSNP
rs1351118580 295 dbSNP
rs1377434586 298 dbSNP
rs1281738361 301 dbSNP
rs1239814847 306 dbSNP
rs1410990734 317 dbSNP
rs1370531230 326 dbSNP
rs1306871798 331 dbSNP
rs1427333484 340 dbSNP
rs544233422 341 dbSNP
rs1292999737 349 dbSNP
rs1032188147 350 dbSNP
rs556428995 358 dbSNP
rs182898542 359 dbSNP
rs185441444 360 dbSNP
rs1267347185 369 dbSNP
rs1018230308 377 dbSNP
rs745844402 378 dbSNP
rs1438435024 389 dbSNP
rs1490864397 390 dbSNP
rs1180637026 392 dbSNP
rs1266188720 394 dbSNP
rs1221148219 398 dbSNP
rs190151302 403 dbSNP
rs1286750351 408 dbSNP
rs1229474218 409 dbSNP
rs1350400611 426 dbSNP
rs1287019998 427 dbSNP
rs976058769 435 dbSNP
rs1369144670 437 dbSNP
rs1157753573 442 dbSNP
rs1293706630 455 dbSNP
rs1457077433 457 dbSNP
rs923324504 458 dbSNP
rs772028455 489 dbSNP
rs1457624558 508 dbSNP
rs1368849917 512 dbSNP
rs950816552 521 dbSNP
rs41270734 528 dbSNP
rs909352296 530 dbSNP
rs1268171150 557 dbSNP
rs1161391456 559 dbSNP
rs1389976676 560 dbSNP
rs1487608352 576 dbSNP
rs1446857548 582 dbSNP
rs1209692425 584 dbSNP
rs1332820382 585 dbSNP
rs1266740969 587 dbSNP
rs1374151250 595 dbSNP
rs942239655 596 dbSNP
rs1313349316 598 dbSNP
rs1313058482 599 dbSNP
rs1323873352 601 dbSNP
rs1243120489 602 dbSNP
rs1301322857 602 dbSNP
rs1265345451 603 dbSNP
rs1055776202 609 dbSNP
rs1319238923 611 dbSNP
rs916876161 618 dbSNP
rs948991716 619 dbSNP
rs1322151783 625 dbSNP
rs1236435541 631 dbSNP
rs1457439820 642 dbSNP
rs1156795120 651 dbSNP
rs1467498872 654 dbSNP
rs182824572 662 dbSNP
rs539350818 664 dbSNP
rs902242740 668 dbSNP
rs559338880 670 dbSNP
rs1425307075 681 dbSNP
rs1189492924 684 dbSNP
rs561803077 692 dbSNP
rs1185204323 715 dbSNP
rs999259539 728 dbSNP
rs1053570981 729 dbSNP
rs528889612 734 dbSNP
rs1006765331 738 dbSNP
rs1367772478 741 dbSNP
rs1231815038 745 dbSNP
rs1309936968 750 dbSNP
rs1466107161 756 dbSNP
rs112509046 766 dbSNP
rs187389510 776 dbSNP
rs575884055 777 dbSNP
rs1464708007 791 dbSNP
rs1030307664 802 dbSNP
rs950741560 805 dbSNP
rs543902588 810 dbSNP
rs1394597192 812 dbSNP
rs1392130992 819 dbSNP
rs1234073974 824 dbSNP
rs1449057651 839 dbSNP
rs909331630 841 dbSNP
rs533265059 857 dbSNP
rs766457747 858 dbSNP
rs1443365965 861 dbSNP
rs765160674 862 dbSNP
rs963875232 868 dbSNP
rs193160724 871 dbSNP
rs1302564306 872 dbSNP
rs1221016200 874 dbSNP
rs1481960870 876 dbSNP
rs138177732 877 dbSNP
rs1317374360 878 dbSNP
rs183755663 879 dbSNP
rs533772672 895 dbSNP
rs949636767 927 dbSNP
rs1210967687 931 dbSNP
rs1294968051 933 dbSNP
rs73037892 938 dbSNP
rs1340882559 941 dbSNP
rs114584283 943 dbSNP
rs537844487 947 dbSNP
rs750656873 952 dbSNP
rs935019903 952 dbSNP
rs115952869 957 dbSNP
rs1429258410 959 dbSNP
rs893559684 969 dbSNP
rs1165224643 971 dbSNP
rs942494741 972 dbSNP
rs72697779 980 dbSNP
rs901074343 981 dbSNP
rs998039480 987 dbSNP
rs149549702 988 dbSNP
rs1182248728 989 dbSNP
rs1482446567 991 dbSNP
rs759420414 996 dbSNP
rs370896138 1000 dbSNP
rs1211292308 1002 dbSNP
rs1356676818 1006 dbSNP
rs193135489 1009 dbSNP
rs1242424875 1010 dbSNP
rs147274411 1018 dbSNP
rs1302569678 1028 dbSNP
rs963499660 1030 dbSNP
rs1402321245 1033 dbSNP
rs542896003 1034 dbSNP
rs1340504535 1035 dbSNP
rs1259633435 1036 dbSNP
rs1325721731 1036 dbSNP
rs34678493 1036 dbSNP
rs397981853 1036 dbSNP
rs1023792651 1038 dbSNP
rs1219837614 1046 dbSNP
rs1413260603 1052 dbSNP
rs1465024556 1052 dbSNP
rs1303541405 1053 dbSNP
rs1310596385 1054 dbSNP
rs970916117 1062 dbSNP
rs1287093659 1069 dbSNP
rs982354436 1071 dbSNP
rs1451817106 1073 dbSNP
rs1266306763 1075 dbSNP
rs749969320 1076 dbSNP
rs1211530813 1078 dbSNP
rs1330954172 1097 dbSNP
rs1268641301 1100 dbSNP
rs140780938 1114 dbSNP
rs1218581317 1120 dbSNP
rs934945840 1128 dbSNP
rs529003841 1129 dbSNP
rs751889161 1132 dbSNP
rs1437678375 1141 dbSNP
rs1389874209 1147 dbSNP
rs1158960186 1151 dbSNP
rs544184427 1156 dbSNP
rs942483706 1159 dbSNP
rs1039882533 1166 dbSNP
rs1478078604 1174 dbSNP
rs1376651472 1176 dbSNP
rs720612 1182 dbSNP
rs1426679019 1186 dbSNP
rs933859796 1190 dbSNP
rs1046961233 1192 dbSNP
rs113574305 1193 dbSNP
rs1174912509 1197 dbSNP
rs1280718533 1202 dbSNP
rs1380574479 1215 dbSNP
rs1344442170 1219 dbSNP
rs147412044 1223 dbSNP
rs1016277752 1225 dbSNP
rs1366253293 1226 dbSNP
rs899188049 1240 dbSNP
rs183563193 1241 dbSNP
rs1023761359 1250 dbSNP
rs970884883 1252 dbSNP
rs35089441 1256 dbSNP
rs1414502624 1257 dbSNP
rs1423881132 1264 dbSNP
rs1171254132 1276 dbSNP
rs1450910252 1282 dbSNP
rs1390471084 1288 dbSNP
rs1187679727 1292 dbSNP
rs12072200 1299 dbSNP
rs1239060178 1309 dbSNP
rs1210759930 1310 dbSNP
rs879623636 1311 dbSNP
rs1365570763 1316 dbSNP
rs1343123311 1319 dbSNP
rs1297160007 1324 dbSNP
rs1213110566 1341 dbSNP
rs1381839846 1343 dbSNP
rs1285248537 1344 dbSNP
rs559923165 1345 dbSNP
rs186815046 1346 dbSNP
rs1356150802 1349 dbSNP
rs1241992608 1355 dbSNP
rs7414295 1357 dbSNP
rs1283621605 1359 dbSNP
rs964078105 1384 dbSNP
rs1407958152 1388 dbSNP
rs1316207247 1395 dbSNP
rs975181184 1412 dbSNP
rs567374175 1416 dbSNP
rs922394370 1420 dbSNP
rs1248455409 1422 dbSNP
rs191636295 1427 dbSNP
rs1046886230 1430 dbSNP
rs184020611 1440 dbSNP
rs1323781310 1441 dbSNP
rs941303971 1441 dbSNP
rs189800509 1442 dbSNP
rs1228177432 1443 dbSNP
rs974954722 1450 dbSNP
rs538692866 1451 dbSNP
rs1407737496 1457 dbSNP
rs899159505 1458 dbSNP
rs1012703292 1460 dbSNP
rs182056523 1462 dbSNP
rs185413057 1475 dbSNP
rs1003685970 1476 dbSNP
rs909618209 1477 dbSNP
rs1415495725 1478 dbSNP
rs1161325263 1484 dbSNP
rs1472932110 1491 dbSNP
rs1251139776 1493 dbSNP
rs1435784103 1497 dbSNP
rs1489585545 1501 dbSNP
rs1247568233 1508 dbSNP
rs957116813 1512 dbSNP
rs1011144349 1514 dbSNP
rs1023003242 1525 dbSNP
rs963743818 1526 dbSNP
rs755665325 1531 dbSNP
rs939881090 1534 dbSNP
rs1379310486 1541 dbSNP
rs1329125100 1542 dbSNP
rs1305675449 1550 dbSNP
rs1444855937 1552 dbSNP
rs758198756 1555 dbSNP
rs1293757328 1558 dbSNP
rs1439843120 1565 dbSNP
rs10125 1571 dbSNP
rs982553119 1574 dbSNP
rs1363222188 1581 dbSNP
rs1156997001 1582 dbSNP
rs142735758 1583 dbSNP
rs756943102 1594 dbSNP
rs778905383 1598 dbSNP
rs114704696 1610 dbSNP
rs66529257 1612 dbSNP
rs1250257963 1614 dbSNP
rs1258153821 1621 dbSNP
rs1458777362 1622 dbSNP
rs76940524 1629 dbSNP
rs1000189272 1630 dbSNP
rs35215126 1643 dbSNP
rs1236171440 1666 dbSNP
rs745676682 1668 dbSNP
rs906592012 1669 dbSNP
rs891905691 1678 dbSNP
rs1003610908 1684 dbSNP
rs1183984760 1692 dbSNP
rs1412206763 1695 dbSNP
rs562469824 1697 dbSNP
rs1467610594 1704 dbSNP
rs3752606 1704 dbSNP
rs1402530567 1709 dbSNP
rs1173143711 1713 dbSNP
rs544719220 1719 dbSNP
rs775498845 1720 dbSNP
rs1392323602 1722 dbSNP
rs996869005 1724 dbSNP
rs1029236797 1725 dbSNP
rs1428297298 1737 dbSNP
rs1260210531 1740 dbSNP
rs1202729590 1742 dbSNP
rs1483893861 1751 dbSNP
rs1341350319 1754 dbSNP
rs151009335 1760 dbSNP
rs1011529206 1772 dbSNP
rs1285764677 1776 dbSNP
rs527592376 1777 dbSNP
rs983785226 1780 dbSNP
rs1016987236 1782 dbSNP
rs772980354 1785 dbSNP
rs961124014 1787 dbSNP
rs964651462 1789 dbSNP
rs1293291993 1798 dbSNP
rs1278833466 1801 dbSNP
rs140712114 1802 dbSNP
rs972418335 1804 dbSNP
rs955063552 1814 dbSNP
rs3088322 1821 dbSNP
rs1371680745 1823 dbSNP
rs1190100959 1840 dbSNP
rs531430751 1846 dbSNP
rs949213896 1850 dbSNP
rs1257499356 1860 dbSNP
rs550728042 1861 dbSNP
rs549847786 1862 dbSNP
rs1276283299 1864 dbSNP
rs927215515 1873 dbSNP
rs935895566 1878 dbSNP
rs567624155 1880 dbSNP
rs948638147 1883 dbSNP
rs1292603673 1885 dbSNP
rs763201131 1891 dbSNP
rs572356212 1892 dbSNP
rs927938301 1894 dbSNP
rs891765308 1901 dbSNP
rs765685656 1908 dbSNP
rs1165347724 1909 dbSNP
rs143124803 1916 dbSNP
rs1167433422 1917 dbSNP
rs12745388 1918 dbSNP
rs1040478730 1925 dbSNP
rs1052518855 1927 dbSNP
rs1253316381 1928 dbSNP
rs902044969 1929 dbSNP
rs892546408 1936 dbSNP
rs774516609 1943 dbSNP
rs1211346600 1950 dbSNP
rs1044296409 1951 dbSNP
rs1272425745 1954 dbSNP
rs547076875 1956 dbSNP
rs1331195493 1962 dbSNP
rs1029681653 1966 dbSNP
rs1289067080 1969 dbSNP
rs1238492634 1975 dbSNP
rs888053897 1980 dbSNP
rs900056576 1987 dbSNP
rs566966827 1994 dbSNP
rs1387663159 2000 dbSNP
rs1416387432 2001 dbSNP
rs1335877922 2012 dbSNP
rs1006854352 2030 dbSNP
rs759950983 2038 dbSNP
rs74388383 2053 dbSNP
rs961026752 2054 dbSNP
rs146700702 2059 dbSNP
rs1023995915 2062 dbSNP
rs1469187107 2069 dbSNP
rs971662672 2071 dbSNP
rs1015310760 2073 dbSNP
rs536958815 2077 dbSNP
rs1468684104 2083 dbSNP
rs767718594 2085 dbSNP
rs555169470 2092 dbSNP
rs1211663435 2100 dbSNP
rs927092794 2103 dbSNP
rs973911212 2110 dbSNP
rs935943416 2112 dbSNP
rs1023202571 2113 dbSNP
rs1284882832 2120 dbSNP
rs990432009 2120 dbSNP
rs1348666348 2126 dbSNP
rs969908517 2139 dbSNP
rs779457093 2143 dbSNP
rs576686510 2149 dbSNP
rs1276147846 2150 dbSNP
rs1370580567 2166 dbSNP
rs1301695180 2168 dbSNP
rs1437744965 2170 dbSNP
rs866242443 2171 dbSNP
rs1318283496 2175 dbSNP
rs1399563319 2176 dbSNP
rs1040509467 2190 dbSNP
rs1217872150 2195 dbSNP
rs190565454 2196 dbSNP
rs7605 2201 dbSNP
rs1454447071 2202 dbSNP
rs988554668 2212 dbSNP
rs1191450688 2215 dbSNP
rs1050628700 2225 dbSNP
rs887908803 2227 dbSNP
rs1192477090 2235 dbSNP
rs1242587300 2238 dbSNP
rs1006513852 2244 dbSNP
rs772423671 2250 dbSNP
rs1378297460 2257 dbSNP
rs1036565780 2268 dbSNP
rs1479083510 2271 dbSNP
rs1445261430 2277 dbSNP
rs896857100 2283 dbSNP
rs1280786782 2285 dbSNP
rs913956957 2288 dbSNP
rs1347410559 2292 dbSNP
rs1171035305 2295 dbSNP
rs773505680 2298 dbSNP
rs1278464888 2307 dbSNP
rs993777970 2308 dbSNP
rs1433811906 2309 dbSNP
rs747251967 2335 dbSNP
rs11807657 2339 dbSNP
rs866079400 2345 dbSNP
rs545884433 2346 dbSNP
rs1380467438 2347 dbSNP
rs544942553 2351 dbSNP
rs1034187217 2353 dbSNP
rs575875658 2357 dbSNP
rs1431347088 2360 dbSNP
rs899995281 2361 dbSNP
rs990099680 2362 dbSNP
rs1272692213 2372 dbSNP
rs913137609 2374 dbSNP
rs559901323 2377 dbSNP
rs1241279034 2382 dbSNP
rs1474382351 2382 dbSNP
rs1288609931 2386 dbSNP
rs763740673 2387 dbSNP
rs976098510 2388 dbSNP
rs1051250036 2397 dbSNP
rs571982068 2398 dbSNP
rs1268750038 2400 dbSNP
rs796302486 2408 dbSNP
rs932092632 2410 dbSNP
rs1308346458 2413 dbSNP
rs1272741684 2415 dbSNP
rs1213241054 2421 dbSNP
rs542491873 2425 dbSNP
rs1359013382 2427 dbSNP
rs560884282 2427 dbSNP
rs1294446453 2431 dbSNP
rs1050938138 2433 dbSNP
rs181999887 2440 dbSNP
rs1015695323 2442 dbSNP
rs753379780 2447 dbSNP
rs549614104 2448 dbSNP
rs1169467216 2469 dbSNP
rs1408013352 2473 dbSNP
rs565335942 2476 dbSNP
rs1158961754 2478 dbSNP
rs14212 2493 dbSNP
rs898103322 2494 dbSNP
rs969876717 2495 dbSNP
rs1157896017 2500 dbSNP
rs1333782451 2508 dbSNP
rs1391422471 2509 dbSNP
rs547738602 2515 dbSNP
rs1002710129 2523 dbSNP
rs771280842 2523 dbSNP
rs1184525890 2525 dbSNP
rs565958743 2540 dbSNP
rs1323348277 2545 dbSNP
rs1202782561 2546 dbSNP
rs1453714924 2548 dbSNP
rs1274296122 2550 dbSNP
rs1233182718 2555 dbSNP
rs1333387399 2563 dbSNP
rs1290899961 2570 dbSNP
rs61995896 2571 dbSNP
rs759638778 2579 dbSNP
rs1373534423 2586 dbSNP
rs988133169 2593 dbSNP
rs769676142 2605 dbSNP
rs1396381499 2606 dbSNP
rs1326380630 2607 dbSNP
rs1001329309 2617 dbSNP
rs1161393413 2620 dbSNP
rs1407475469 2622 dbSNP
rs1175721805 2626 dbSNP
rs1479154689 2642 dbSNP
rs1253983085 2644 dbSNP
rs1034503805 2651 dbSNP
rs548882827 2653 dbSNP
rs140274317 2658 dbSNP
rs1020104272 2662 dbSNP
rs1467516327 2665 dbSNP
rs8917 2671 dbSNP
rs1334352884 2679 dbSNP
rs1238834825 2683 dbSNP
rs1317012770 2684 dbSNP
rs1305735154 2693 dbSNP
rs1221686789 2704 dbSNP
rs747032222 2706 dbSNP
rs768445123 2708 dbSNP
rs975962700 2722 dbSNP
rs923300193 2726 dbSNP
rs953495939 2731 dbSNP
rs1044980456 2741 dbSNP
rs541380648 2743 dbSNP
rs1290590876 2744 dbSNP
rs986261693 2746 dbSNP
rs868053847 2750 dbSNP
rs940249372 2755 dbSNP
rs1037315874 2756 dbSNP
rs8623 2758 dbSNP
rs1472948693 2759 dbSNP
rs185284937 2772 dbSNP
rs1036503840 2773 dbSNP
rs1452966009 2775 dbSNP
rs1250395337 2779 dbSNP
rs1180848642 2780 dbSNP
rs1044128086 2785 dbSNP
rs770931859 2790 dbSNP
rs949643502 2793 dbSNP
rs774571558 2805 dbSNP
rs145325991 2814 dbSNP
rs1162101764 2816 dbSNP
rs12316 2822 dbSNP
rs1465752811 2828 dbSNP
rs571693869 2835 dbSNP
rs1297515695 2838 dbSNP
rs1332923366 2843 dbSNP
rs1382676750 2848 dbSNP
rs1361265141 2856 dbSNP
rs936989010 2863 dbSNP
rs1035539622 2864 dbSNP
rs1393946829 2869 dbSNP
rs1391138354 2877 dbSNP
rs775689415 2883 dbSNP
rs1433149844 2887 dbSNP
rs1055570289 2888 dbSNP
rs1375109915 2889 dbSNP
rs1171642568 2895 dbSNP
rs1342720886 2903 dbSNP
rs1190795644 2913 dbSNP
rs542256809 2913 dbSNP
rs892894840 2927 dbSNP
rs1021574795 2928 dbSNP
rs1318661698 2938 dbSNP
rs1200655993 2939 dbSNP
rs1249785919 2950 dbSNP
rs1345344762 2956 dbSNP
rs1011301871 2964 dbSNP
rs979467520 2968 dbSNP
rs554441851 2972 dbSNP
rs1306789224 2974 dbSNP
rs1480448509 2979 dbSNP
rs1020136868 2980 dbSNP
rs921320806 2980 dbSNP
rs1416656512 2982 dbSNP
rs902979244 2993 dbSNP
rs761296207 3009 dbSNP
rs954148494 3020 dbSNP
rs1312395339 3021 dbSNP
rs764724307 3023 dbSNP
rs575937097 3024 dbSNP
rs1417136398 3025 dbSNP
rs545631216 3030 dbSNP
rs1030650727 3031 dbSNP
rs543565624 3032 dbSNP
rs1172225259 3036 dbSNP
rs986557140 3038 dbSNP
rs1167770701 3044 dbSNP
rs1016238825 3048 dbSNP
rs564951647 3049 dbSNP
rs940237536 3055 dbSNP
rs1461182226 3058 dbSNP
rs1303122119 3059 dbSNP
rs1404791707 3066 dbSNP
rs1413365456 3068 dbSNP
rs865779690 3078 dbSNP
rs972085526 3081 dbSNP
rs12071420 3085 dbSNP
rs949544464 3090 dbSNP
rs982411871 3108 dbSNP
rs189891170 3109 dbSNP
rs1293531703 3115 dbSNP
rs148979779 3116 dbSNP
rs1329831893 3127 dbSNP
rs1391136165 3128 dbSNP
rs1394760525 3131 dbSNP
rs1234219577 3147 dbSNP
rs905586660 3161 dbSNP
rs938252393 3175 dbSNP
rs1055880124 3177 dbSNP
rs892771644 3181 dbSNP
rs1163507379 3187 dbSNP
rs1208528703 3192 dbSNP
rs1471524991 3203 dbSNP
rs1256661495 3215 dbSNP
rs1182107195 3222 dbSNP
rs113581119 3229 dbSNP
rs891613094 3235 dbSNP
rs1041485777 3238 dbSNP
rs1010075515 3241 dbSNP
rs747217541 3242 dbSNP
rs1272480029 3245 dbSNP
rs903048195 3246 dbSNP
rs761409734 3250 dbSNP
rs1030142200 3252 dbSNP
rs1352968558 3256 dbSNP
rs1280267496 3269 dbSNP
rs767247690 3272 dbSNP
rs531530393 3273 dbSNP
rs755640690 3278 dbSNP
rs1007444329 3284 dbSNP
rs1334268362 3287 dbSNP
rs1379058708 3293 dbSNP
rs1016683555 3303 dbSNP
rs963347988 3310 dbSNP
rs868400656 3312 dbSNP
rs148155475 3318 dbSNP
rs750144708 3323 dbSNP
rs1370821549 3327 dbSNP
rs1361659580 3334 dbSNP
rs970892279 3335 dbSNP
rs1386465522 3337 dbSNP
rs141847648 3345 dbSNP
rs1452590474 3346 dbSNP
rs1378115704 3353 dbSNP
rs926782077 3355 dbSNP
rs1195195560 3359 dbSNP
rs1454575275 3361 dbSNP
rs938270078 3362 dbSNP
rs989709530 3366 dbSNP
rs986840094 3367 dbSNP
rs779937837 3368 dbSNP
rs1285035716 3372 dbSNP
rs1287691405 3378 dbSNP
rs1351704828 3382 dbSNP
rs1282744040 3389 dbSNP
rs368920044 3390 dbSNP
rs1433499603 3396 dbSNP
rs1327589201 3413 dbSNP
rs1318343939 3418 dbSNP
rs1381167331 3424 dbSNP
rs1041512097 3425 dbSNP
rs1387469966 3431 dbSNP
rs1358193899 3432 dbSNP
rs924375979 3435 dbSNP
rs10753763 3442 dbSNP
rs1435006191 3444 dbSNP
rs1394222358 3450 dbSNP
rs1052042546 3455 dbSNP
rs888917358 3456 dbSNP
rs1170661078 3458 dbSNP
rs1476341850 3459 dbSNP
rs920143022 3472 dbSNP
rs931600159 3475 dbSNP
rs535255299 3480 dbSNP
rs553578038 3482 dbSNP
rs1259813566 3486 dbSNP
rs76775177 3489 dbSNP
rs1217852648 3490 dbSNP
rs1240322337 3498 dbSNP
rs535801366 3501 dbSNP
rs1347479036 3509 dbSNP
rs1276932076 3513 dbSNP
rs1216703796 3514 dbSNP
rs1340598033 3518 dbSNP
rs781112567 3522 dbSNP
rs1026247814 3523 dbSNP
rs371184482 3526 dbSNP
rs891553642 3534 dbSNP
rs1337748820 3538 dbSNP
rs768585524 3538 dbSNP
rs1415017741 3543 dbSNP
rs970798584 3548 dbSNP
rs748021375 3550 dbSNP
rs1411451220 3554 dbSNP
rs35065671 3555 dbSNP
rs879798496 3560 dbSNP
rs1476828236 3580 dbSNP
rs773211365 3584 dbSNP
rs1381301045 3600 dbSNP
rs1028900920 3606 dbSNP
rs139012766 3611 dbSNP
rs1207018261 3613 dbSNP
rs990173763 3618 dbSNP
rs1291712742 3620 dbSNP
rs915478678 3631 dbSNP
rs181105938 3641 dbSNP
rs1217307556 3644 dbSNP
rs747338252 3650 dbSNP
rs10753764 3651 dbSNP
rs1233379788 3652 dbSNP
rs867080672 3655 dbSNP
rs1295396386 3656 dbSNP
rs1282098626 3659 dbSNP
rs558839584 3661 dbSNP
rs186660095 3667 dbSNP
rs1354874187 3676 dbSNP
rs1027136020 3685 dbSNP
rs910413591 3690 dbSNP
rs1165663284 3704 dbSNP
rs943201132 3708 dbSNP
rs541258885 3711 dbSNP
rs1037603814 3713 dbSNP
rs1411837735 3717 dbSNP
rs191445959 3720 dbSNP
rs183602418 3726 dbSNP
rs10800323 3727 dbSNP
rs1197212632 3734 dbSNP
rs1047727305 3735 dbSNP
rs1274355833 3742 dbSNP
rs938295632 3745 dbSNP
rs906494511 3746 dbSNP
rs1004074927 3747 dbSNP
rs746002092 3763 dbSNP
rs1320615317 3774 dbSNP
rs1287188979 3777 dbSNP
rs1033760812 3778 dbSNP
rs1308186724 3781 dbSNP
rs1466797746 3795 dbSNP
rs992508595 3804 dbSNP
rs552825779 3806 dbSNP
rs188493549 3808 dbSNP
rs1011093346 3811 dbSNP
rs1022444255 3812 dbSNP
rs1407540439 3814 dbSNP
rs945799935 3816 dbSNP
rs1175875111 3817 dbSNP
rs1455877196 3833 dbSNP
rs769919304 3837 dbSNP
rs531207025 3840 dbSNP
rs931856423 3844 dbSNP
rs978301910 3849 dbSNP
rs924314042 3852 dbSNP
rs1217384612 3862 dbSNP
rs1424910668 3866 dbSNP
rs954397116 3869 dbSNP
rs1392365455 3874 dbSNP
rs1237633750 3875 dbSNP
rs1349759443 3876 dbSNP
rs775372614 3881 dbSNP
rs1461022513 3887 dbSNP
rs143146901 3893 dbSNP
rs1386140303 3905 dbSNP
rs1365479945 3909 dbSNP
rs910285371 3910 dbSNP
rs1431572255 3916 dbSNP
rs1360084170 3918 dbSNP
rs943091772 3921 dbSNP
rs1402757814 3932 dbSNP
rs1008152873 3933 dbSNP
rs973225434 3936 dbSNP
rs920395749 3939 dbSNP
rs1175880120 3950 dbSNP
rs1277559321 3953 dbSNP
rs929229532 3953 dbSNP
rs1431930933 3956 dbSNP
rs1372455243 3957 dbSNP
rs1041069522 3959 dbSNP
rs1047636284 3961 dbSNP
rs1228806077 3964 dbSNP
rs1295125065 3966 dbSNP
rs1331994544 3967 dbSNP
rs1212577392 3975 dbSNP
rs564840623 3976 dbSNP
rs1261902380 3977 dbSNP
rs1439227953 3977 dbSNP
rs1202790636 3978 dbSNP
rs1232682107 3980 dbSNP
rs1483819486 3982 dbSNP
rs1190654270 3984 dbSNP
rs528675950 3985 dbSNP
rs1416397276 3986 dbSNP
rs897170665 3989 dbSNP
rs192283907 3990 dbSNP
rs775729518 3995 dbSNP
rs939354115 4002 dbSNP
rs994249066 4010 dbSNP
rs1055511388 4014 dbSNP
rs1280770217 4015 dbSNP
rs1474892559 4015 dbSNP
rs565398718 4023 dbSNP
rs1310292190 4030 dbSNP
rs1421834312 4038 dbSNP
rs1408442923 4039 dbSNP
rs535960751 4047 dbSNP
rs1022472437 4052 dbSNP
rs1215185820 4053 dbSNP
rs147481157 4073 dbSNP
rs569285311 4074 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000474859.1 | 3UTR | UUUUUACUUUUUACUGGGAAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
184 hsa-miR-548am-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057132 DDIT4 DNA damage inducible transcript 4 2 4
MIRT063379 ETNK1 ethanolamine kinase 1 2 2
MIRT072501 RAB8B RAB8B, member RAS oncogene family 2 2
MIRT082193 ACTN4 actinin alpha 4 2 6
MIRT083043 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT085196 SLC5A3 solute carrier family 5 member 3 2 4
MIRT088913 FOXN2 forkhead box N2 2 4
MIRT089506 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 6
MIRT092047 ABHD5 abhydrolase domain containing 5 2 2
MIRT094692 FEM1C fem-1 homolog C 2 2
MIRT095403 UBE2D2 ubiquitin conjugating enzyme E2 D2 2 2
MIRT096509 BRIX1 BRX1, biogenesis of ribosomes 2 2
MIRT101303 FAM135A family with sequence similarity 135 member A 2 2
MIRT103366 CBX3 chromobox 3 2 2
MIRT103883 FOXK1 forkhead box K1 2 2
MIRT104343 CLDN12 claudin 12 2 2
MIRT104508 PEG10 paternally expressed 10 2 6
MIRT111808 MPZL1 myelin protein zero like 1 2 2
MIRT177246 BMI1 BMI1 proto-oncogene, polycomb ring finger 2 2
MIRT177281 COMMD3-BMI1 COMMD3-BMI1 readthrough 2 2
MIRT177633 UBE2D1 ubiquitin conjugating enzyme E2 D1 2 6
MIRT178049 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT179109 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 2 6
MIRT179594 CAPZA1 capping actin protein of muscle Z-line alpha subunit 1 2 6
MIRT195307 LEPROT leptin receptor overlapping transcript 2 2
MIRT203152 BACH1 BTB domain and CNC homolog 1 2 2
MIRT208437 ZBTB38 zinc finger and BTB domain containing 38 2 2
MIRT214585 SMAD5 SMAD family member 5 2 4
MIRT216112 IL6ST interleukin 6 signal transducer 2 2
MIRT216363 CCNB1 cyclin B1 2 4
MIRT220059 MDFIC MyoD family inhibitor domain containing 2 2
MIRT226737 ANP32B acidic nuclear phosphoprotein 32 family member B 2 4
MIRT227706 TBC1D13 TBC1 domain family member 13 2 2
MIRT230079 SH3BGRL SH3 domain binding glutamate rich protein like 2 2
MIRT248644 HMGN2 high mobility group nucleosomal binding domain 2 2 4
MIRT254799 XRCC6 X-ray repair cross complementing 6 2 6
MIRT264388 YAP1 Yes associated protein 1 2 2
MIRT266982 LRRC55 leucine rich repeat containing 55 2 4
MIRT273957 SPRYD4 SPRY domain containing 4 2 2
MIRT281809 MAP2K1 mitogen-activated protein kinase kinase 1 2 2
MIRT293262 DR1 down-regulator of transcription 1 2 2
MIRT297105 RGPD4 RANBP2-like and GRIP domain containing 4 2 2
MIRT308178 PDE12 phosphodiesterase 12 2 2
MIRT309022 USP53 ubiquitin specific peptidase 53 2 2
MIRT311477 PRRC1 proline rich coiled-coil 1 2 2
MIRT312595 G3BP1 G3BP stress granule assembly factor 1 2 4
MIRT328137 ZNF711 zinc finger protein 711 2 2
MIRT329321 FAM53C family with sequence similarity 53 member C 2 2
MIRT334649 NEK7 NIMA related kinase 7 2 2
MIRT340680 THRAP3 thyroid hormone receptor associated protein 3 2 2
MIRT378865 ITGB8 integrin subunit beta 8 2 2
MIRT395798 SPCS3 signal peptidase complex subunit 3 2 2
MIRT405648 WBP4 WW domain binding protein 4 2 4
MIRT408294 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT442112 ZNRF2 zinc and ring finger 2 2 8
MIRT442855 GTF2H5 general transcription factor IIH subunit 5 2 2
MIRT443131 VLDLR very low density lipoprotein receptor 2 2
MIRT443162 ZDHHC21 zinc finger DHHC-type containing 21 2 2
MIRT443313 PRPS1L1 phosphoribosyl pyrophosphate synthetase 1-like 1 2 2
MIRT445095 ZNF207 zinc finger protein 207 2 2
MIRT445399 PTCHD1 patched domain containing 1 2 4
MIRT447085 MCC mutated in colorectal cancers 2 2
MIRT447315 ZNF562 zinc finger protein 562 2 2
MIRT447528 MRPS5 mitochondrial ribosomal protein S5 2 2
MIRT449526 TM6SF1 transmembrane 6 superfamily member 1 2 2
MIRT449917 C11orf34 placenta expressed transcript 1 1 2
MIRT450566 SHFM1 SEM1, 26S proteasome complex subunit 2 2
MIRT450734 PVRL3 nectin cell adhesion molecule 3 2 2
MIRT454938 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 12
MIRT455907 KIF2C kinesin family member 2C 2 2
MIRT463747 YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon 2 8
MIRT471197 PHB2 prohibitin 2 2 2
MIRT472779 MTMR6 myotubularin related protein 6 2 8
MIRT474472 KLHL11 kelch like family member 11 2 8
MIRT476000 GTPBP2 GTP binding protein 2 2 2
MIRT482291 AGO2 argonaute 2, RISC catalytic component 2 4
MIRT485873 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT486207 ERH ERH, mRNA splicing and mitosis factor 2 4
MIRT488624 FAM3C family with sequence similarity 3 member C 2 6
MIRT489999 DDB1 damage specific DNA binding protein 1 2 2
MIRT493491 IPMK inositol polyphosphate multikinase 2 2
MIRT494295 CEP120 centrosomal protein 120 2 2
MIRT498007 ZBTB20 zinc finger and BTB domain containing 20 2 2
MIRT498488 PTBP2 polypyrimidine tract binding protein 2 2 10
MIRT498575 TMEM30B transmembrane protein 30B 2 2
MIRT499882 SVOP SV2 related protein 2 10
MIRT500235 INHBA inhibin beta A subunit 2 10
MIRT500709 TRIM37 tripartite motif containing 37 2 2
MIRT501003 SPPL2A signal peptide peptidase like 2A 2 4
MIRT501038 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502751 CLIP1 CAP-Gly domain containing linker protein 1 2 8
MIRT502813 CELSR3 cadherin EGF LAG seven-pass G-type receptor 3 2 6
MIRT502903 CDK4 cyclin dependent kinase 4 2 8
MIRT503498 ZNF154 zinc finger protein 154 2 6
MIRT503732 GRM5 glutamate metabotropic receptor 5 2 2
MIRT505152 YOD1 YOD1 deubiquitinase 2 2
MIRT505817 RSBN1 round spermatid basic protein 1 2 8
MIRT505856 POLR1B RNA polymerase I subunit B 2 4
MIRT509299 NPM3 nucleophosmin/nucleoplasmin 3 2 6
MIRT516844 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT520534 TRA2B transformer 2 beta homolog 2 2
MIRT520738 TM9SF3 transmembrane 9 superfamily member 3 2 6
MIRT525418 SHISA9 shisa family member 9 2 4
MIRT525882 ARL13B ADP ribosylation factor like GTPase 13B 2 2
MIRT526028 RBM4B RNA binding motif protein 4B 2 2
MIRT526099 TMEM41B transmembrane protein 41B 2 2
MIRT527946 FRY FRY microtubule binding protein 2 2
MIRT528833 RAB32 RAB32, member RAS oncogene family 2 2
MIRT531077 SLC9A4 solute carrier family 9 member A4 2 4
MIRT535510 PANX1 pannexin 1 2 2
MIRT536697 IKZF5 IKAROS family zinc finger 5 2 2
MIRT536850 HMBOX1 homeobox containing 1 2 2
MIRT537217 GDE1 glycerophosphodiester phosphodiesterase 1 2 4
MIRT537849 EFNA5 ephrin A5 2 2
MIRT538360 CSE1L chromosome segregation 1 like 2 4
MIRT541257 GPC4 glypican 4 2 2
MIRT543250 PEX7 peroxisomal biogenesis factor 7 2 2
MIRT543465 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT543726 XKR9 XK related 9 2 2
MIRT543922 ESYT1 extended synaptotagmin 1 2 2
MIRT544014 KLRC3 killer cell lectin like receptor C3 2 2
MIRT544085 METTL8 methyltransferase like 8 2 2
MIRT544202 ANGPTL3 angiopoietin like 3 2 2
MIRT544823 ACSM2B acyl-CoA synthetase medium chain family member 2B 2 2
MIRT545061 PRELID1 PRELI domain containing 1 2 2
MIRT545229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT545304 SPC25 SPC25, NDC80 kinetochore complex component 2 2
MIRT545565 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT546512 SIK1 salt inducible kinase 1 2 2
MIRT546929 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 2
MIRT547690 KPNA1 karyopherin subunit alpha 1 2 4
MIRT547783 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT548702 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 2
MIRT548916 CHEK2 checkpoint kinase 2 2 4
MIRT549972 RPL7L1 ribosomal protein L7 like 1 2 4
MIRT550504 TMEM241 transmembrane protein 241 2 2
MIRT551064 MKLN1 muskelin 1 2 2
MIRT552826 XIAP X-linked inhibitor of apoptosis 2 4
MIRT553160 UBE2H ubiquitin conjugating enzyme E2 H 2 2
MIRT553845 SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein 2 2
MIRT554273 SIX4 SIX homeobox 4 2 2
MIRT555796 PCMTD1 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 2 2
MIRT556333 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT556514 LIPA lipase A, lysosomal acid type 2 2
MIRT556708 KLHL28 kelch like family member 28 2 2
MIRT556767 KLF7 Kruppel like factor 7 2 2
MIRT557005 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557161 HOXA13 homeobox A13 2 2
MIRT557502 GPR27 G protein-coupled receptor 27 2 4
MIRT558117 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 2 2
MIRT559359 ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) 2 2
MIRT560350 ZWINT ZW10 interacting kinetochore protein 2 2
MIRT561314 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT561898 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 2
MIRT561942 MFSD9 major facilitator superfamily domain containing 9 2 2
MIRT562950 TNIP2 TNFAIP3 interacting protein 2 2 2
MIRT563306 BBS10 Bardet-Biedl syndrome 10 2 2
MIRT563420 KIF3A kinesin family member 3A 2 2
MIRT563577 KIAA1586 KIAA1586 2 2
MIRT565891 NHS NHS actin remodeling regulator 2 2
MIRT566096 RCC2 regulator of chromosome condensation 2 2 2
MIRT566411 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT567274 HSP90AA1 heat shock protein 90 alpha family class A member 1 2 2
MIRT571483 CCDC80 coiled-coil domain containing 80 2 2
MIRT572954 VDAC2 voltage dependent anion channel 2 2 2
MIRT573643 ZNF724P zinc finger protein 724 2 2
MIRT573732 KHSRP KH-type splicing regulatory protein 2 2
MIRT609103 SMIM15 small integral membrane protein 15 2 6
MIRT617951 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT618394 PRKG2 protein kinase, cGMP-dependent, type II 2 2
MIRT619642 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 2 2
MIRT623470 KDM5A lysine demethylase 5A 2 2
MIRT629160 CTCFL CCCTC-binding factor like 2 2
MIRT638536 LYRM2 LYR motif containing 2 2 2
MIRT649498 CLDN16 claudin 16 2 2
MIRT683163 MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 2 2
MIRT691675 SLC43A3 solute carrier family 43 member 3 2 2
MIRT693216 MKI67 marker of proliferation Ki-67 2 2
MIRT695349 AQP3 aquaporin 3 (Gill blood group) 2 2
MIRT701038 PCGF5 polycomb group ring finger 5 2 2
MIRT708768 RYBP RING1 and YY1 binding protein 2 2
MIRT717573 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT719301 SETD7 SET domain containing lysine methyltransferase 7 2 2
MIRT725187 SDAD1 SDA1 domain containing 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-548am-5p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549, HCC827)
hsa-miR-548am-5p Gefitinib 123631 NSC715055 approved resistant High Non-Small Cell Lung Cancer cell line (A549, HCC827)
hsa-miR-548am-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-548am-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)

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