miRTarBase - #MIRT114515


—
pre-miRNA Information
pre-miRNA hsa-mir-4477a   
Genomic Coordinates chr9: 41233755 - 41233835
Description Homo sapiens miR-4477a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4477a
Sequence 48| CUAUUAAGGACAUUUGUGAUUC |69
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1281813060 1 dbSNP
rs1352899679 1 dbSNP
rs1283566158 2 dbSNP
rs1236244724 4 dbSNP
rs75019967 4 dbSNP
rs1348124293 5 dbSNP
rs34026740 8 dbSNP
rs1288237115 9 dbSNP
rs71262206 10 dbSNP
rs1355759977 11 dbSNP
rs1300249508 16 dbSNP
rs1328879592 18 dbSNP
rs139133717 20 dbSNP
Putative Targets

Gene Information
Gene Symbol ARF6   
Synonyms -
Description ADP ribosylation factor 6
Transcript NM_001663   
Expression
Putative miRNA Targets on ARF6
3'UTR of ARF6
(miRNA target sites are highlighted)		 
>ARF6|NM_001663|3'UTR
   1 TGAGCATTCTCCACCCATCCCCTGGAAGGAGAGAAATCAAAAACCCATTCATAGGATTATCGCCACCATCACCTCTTTCA
  81 ATTGCCACTTTCTCTTCTTTTGAATTTGAACTCTGGAGTTACTGTTCTACAGTTTGGCGGGGACGGGGCTTGGGGGTTTT
 161 CTCTTTTGTTTGTTTCCCTTTCTTTTTCCTTTTTTTTTTTTTTTTTTTTTTGTTGGCTTTGCGTTAGGATGCTCTGATCT
 241 GACATTTGACATGAACACAAAGTTGCTAGATGCTCTTGTTGACTTCCAGCAGATGGGATGGGGGAAACACAGCAGTTCTT
 321 GGTAAAGTCCTTTGTAATAATAGTTTGATTTTTTTATTTCGAGAGAATCTTTCATTTTCCTATGTATGCTTTTTTCCTTT
 401 TTTGCCCAGTTTCCTTATCACTTGCTGTAGATGGCTTATTTTGCATTCATGCAGACTATGTTGCAAGTCTGTTTCATCTA
 481 GTAAACTGAAAATTATTGCTTAATCAAACTGCCGTTTGTCTTTTATATTTAAGGCCTTCCCCCCCCTTCCTTATGAGTTC
 561 TAACTTAGTAATTTCAAATGTGACCTTTTATATCTAAGACCAGTATAGTAAACTTAGCCCACAGTGGCAAATAATGAGTA
 641 ATATTGTAATATGTTCCAGTTGCACCTCAGTATGTTAAACAGGTAATGTAAGAAGTTCTCTGAAATGTCAGCAAGTAAGT
 721 TCTGAAACACATCATGCATGAGTAGGAATAAAACCCAAGTTCCCCATAACGTAGATAACTTAATGCTGCATAAAAATATG
 801 AAAGTGTAACCCATGAAGGACACTTTTTCTTTCCACTGCAAAGTTAGCCACTTTGCTGTTTTTCCTCTTTTTTAAACTTT
 881 GAAAATAGACTCTTTCCAGAAATTGGAGCAATAATGGTGTTACCACACACAGATTAAATAATTTGTAGATATTTTAAGTG
 961 ACTTTTGGGCAAAACTGGAATGTATACTTTTACCTTGTTTCAAACACCTAAGACCAGTAATTTAAAAATTACTAAAAGGT
1041 TTACTTTGTTCATTAATAAAACATTTAACAATTCAAATTATATGCACCTTTTACCTAGTTGAAAAAAATACACATTCCTG
1121 TTTTCACATTATAGCAACTGATTAAGCTGAAGCTGTAAGTCATTTTTTATAGATGAGTGATCCGCATCTCCATCAATTAG
1201 AACACTGGAAAAGATGTTTTATAAAAGAGGTATTTAATTTTGTTTGTAGGATTAACTCATGCAAATAATAAAAAAGATAT
1281 CCTGTTGGTTCAATAGTACACTGTCTCCTTTAAGGAAGGAAGCGTGATGAATGAATGATGTGTAGACTTGAGGGATGACT
1361 ATTAAAGGGGACGTAGGATGAAGAGAAAGAACCTACAGATGACAATGAATGTAAACTTATTTTTCTTCATGTGTAAGCAG
1441 TGTGCTCGCTGGTGATATCCAGATCCTAACAAGATTACTTGGTTAGCTGGTTAGGACCAGTAACTGGATTGCGACCACTA
1521 TGATAATATTTTGAACCAAATGTTAATGCTTGATGCAGAATTGTAAAGCAGCATCTGGTTCCTATATAGCCTTAAGGATT
1601 AATTTTAGTGATCCTCAAGGAATTAAATAGGGAATTTCAGAAATGTAGACTGCAAAGGCAGTATACAGGAAAAGGTGGAG
1681 TGGGTTTTGTTTATGAGGGTGTCTGAAAACTAAAATTGAGCGGGATATCATGGTATAGTTGGACAGTATTGGTCCTTCAC
1761 ACTTTGGCCATATTGTATAATGGAGCTTTTACCAAAGATGTATGAGAAGTGTAAGACTATAAAAAAATGAACTATTCAAA
1841 GTAAAACTCTTAACAAACATTTTACTTAAAGCAGATGCAAAAGGGTATTCTCATGTAGGCTCCTGTTGGTGCAGAGGGAT
1921 TTTTTTGATTTCAGGATACAACTAAAGTACGAAGTTCTCAGTTTCACTTTAGTAGAAAGAGCTCTAGAAATGAGGCTGAT
2001 AAACACATCTAAGAACACTGGTTGCTTTCTAAAATTTCCAAAGCTCCACCATAAATGTAATTTTTAGTGTTTCAAATGAT
2081 TGCATTTTAAAGTATATAAATATGGGTTATCCAATATCAATGCTATAGTAACATCCTGAAACAAAACAAGCACAAAGGTA
2161 TAAATGCCTAAACTGGAGGAAACTTGAAACCCTCATGTTAAATCTTAAATGTAGTATTTCTAACTTGTGAAGACAGATTG
2241 GTAGGCAGCCATTTTTTTGTGTCTTAAAATAACTGGGGGCATAGTTAAAATTTTATACATCAAGTGATTGCTATTATTGA
2321 ATGTTGCAGGTGAGATGTGGTTATTTTTAGTTTATTTGAAATGTTTGACTGGAAAGGGGGGAGGGGGAAGCAAATATTTG
2401 AAATTTGGAAAACCCTAAACCTTTTGGTAAGAAATTGTAATTTTCACTTAAAATTTTCTTTAAGGATATAAGAGGTTTAT
2481 AATTGATGTAGTTAAATTGAACAATAACCATTGGTGACTGGAGCAGGTAATTATAGCCTGCAGAAAAAATTATCTAAGAA
2561 TTTTAAAAATAAGATCCTGAAGTTGTTTAATTGCATCCATTTCTGTATTTATGTGAATTTATAAACTGCAGTAAGTTTTG
2641 AATGAGGTTAATCTTGTTTAATATAAGTAAATGAGTCTGTAGACTGTGATCTCCCCAAACTAAAAAGTACAGTACTTGGA
2721 ATTGTGTTCTTTATGGTTGTAGTGTTGGTAAAGCACTAATATGCAGAAAATAAAGGAATTACACAGTGCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cuUAGUGUUUACAGGAAUUAUc 5'
            | ||||:  ||:|||::|| 
Target 5' gaAACACAGCAGTTCTTGGTAa 3'
 304 - 325 136.00 -12.90
2 
miRNA  3' cuUAGUGUUUACAGGAAUUAUc 5'
            | |::|:||   ||||||: 
Target 5' atAACGTAGAT-AACTTAATGc 3'
 766 - 786 135.00 -8.50
3 
miRNA  3' cuuaguGUUUACAG----GAAUUAUc 5'
                |||||||:    |||:||: 
Target 5' ttgaacCAAATGTTAATGCTTGATGc 3'
 1531 - 1556 130.00 -9.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN28201898 44 COSMIC
COSN31611350 44 COSMIC
COSN31557015 119 COSMIC
COSN20345948 169 COSMIC
COSN20092837 173 COSMIC
COSN20092838 183 COSMIC
COSN518837 210 COSMIC
COSN30122226 212 COSMIC
COSN22858172 213 COSMIC
COSN30532521 229 COSMIC
COSN29819605 312 COSMIC
COSN30174994 362 COSMIC
COSN31523706 368 COSMIC
COSN26669504 406 COSMIC
COSN22841050 463 COSMIC
COSN23012571 547 COSMIC
COSN30304004 547 COSMIC
COSN17869587 548 COSMIC
COSN26669772 595 COSMIC
COSN26669773 600 COSMIC
COSN1652959 692 COSMIC
COSN5171715 703 COSMIC
COSN28707390 710 COSMIC
COSN21985738 778 COSMIC
COSN23012573 874 COSMIC
COSN1652960 1134 COSMIC
COSN29333443 1233 COSMIC
COSN28782210 1259 COSMIC
COSN26586674 1327 COSMIC
COSN7235964 1375 COSMIC
COSN26957963 1403 COSMIC
COSN1652961 1657 COSMIC
COSN16396342 1918 COSMIC
COSN24304945 1939 COSMIC
COSN8588682 1976 COSMIC
COSN26636431 2025 COSMIC
COSN29400029 2308 COSMIC
COSN15623168 2462 COSMIC
COSN15623169 2577 COSMIC
COSN26557112 2745 COSMIC
COSN19662463 2763 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1050428203 1 dbSNP
rs1180481353 5 dbSNP
rs1213896267 6 dbSNP
rs774810229 7 dbSNP
rs1420189659 9 dbSNP
rs373061714 10 dbSNP
rs552803515 12 dbSNP
rs1319196427 13 dbSNP
rs752466709 14 dbSNP
rs1177357512 16 dbSNP
rs1408616062 20 dbSNP
rs1281802864 21 dbSNP
rs1223206908 23 dbSNP
rs1445458644 25 dbSNP
rs755570395 26 dbSNP
rs763604943 29 dbSNP
rs753315410 30 dbSNP
rs757165904 32 dbSNP
rs778869182 33 dbSNP
rs1223623849 34 dbSNP
rs745628393 35 dbSNP
rs1320985474 38 dbSNP
rs1209057900 39 dbSNP
rs758254684 40 dbSNP
rs1398274387 47 dbSNP
rs1481187549 48 dbSNP
rs774416954 52 dbSNP
rs371978931 62 dbSNP
rs1447912831 63 dbSNP
rs1357292714 64 dbSNP
rs562847169 67 dbSNP
rs1470115126 68 dbSNP
rs531794083 69 dbSNP
rs1047023740 73 dbSNP
rs548311221 80 dbSNP
rs190349237 82 dbSNP
rs767570165 83 dbSNP
rs533916032 87 dbSNP
rs1026575178 88 dbSNP
rs1203507649 89 dbSNP
rs112211624 93 dbSNP
rs1265289817 95 dbSNP
rs566425091 99 dbSNP
rs747046547 101 dbSNP
rs1003874953 118 dbSNP
rs1383939543 119 dbSNP
rs181594154 119 dbSNP
rs1015290520 124 dbSNP
rs1335994719 130 dbSNP
rs1470159675 133 dbSNP
rs1362524279 139 dbSNP
rs965534052 143 dbSNP
rs976595705 147 dbSNP
rs1269910063 149 dbSNP
rs1373218420 154 dbSNP
rs1346237764 157 dbSNP
rs985015448 158 dbSNP
rs910764521 162 dbSNP
rs1241879179 164 dbSNP
rs1277183931 165 dbSNP
rs1183497182 167 dbSNP
rs921117263 168 dbSNP
rs942387627 169 dbSNP
rs778068699 172 dbSNP
rs1039313380 173 dbSNP
rs558678193 177 dbSNP
rs1209394931 178 dbSNP
rs1357330095 180 dbSNP
rs933758010 183 dbSNP
rs1491235510 189 dbSNP
rs373961802 189 dbSNP
rs1163625124 190 dbSNP
rs1180183997 190 dbSNP
rs1197749980 190 dbSNP
rs1251561527 190 dbSNP
rs1384096640 190 dbSNP
rs1387572432 190 dbSNP
rs138800769 190 dbSNP
rs1390546218 190 dbSNP
rs1437608821 190 dbSNP
rs1445776328 190 dbSNP
rs1455977875 190 dbSNP
rs1483036918 190 dbSNP
rs1491294756 190 dbSNP
rs35848359 190 dbSNP
rs368376617 190 dbSNP
rs879247552 190 dbSNP
rs1463658737 194 dbSNP
rs1192827480 195 dbSNP
rs1489905908 202 dbSNP
rs1291167752 205 dbSNP
rs1361519120 211 dbSNP
rs61983787 211 dbSNP
rs1277686218 212 dbSNP
rs1336108322 212 dbSNP
rs1303323588 213 dbSNP
rs1478912987 214 dbSNP
rs1364496959 215 dbSNP
rs1170706383 216 dbSNP
rs1428459337 217 dbSNP
rs1457720044 221 dbSNP
rs1160669350 222 dbSNP
rs575259203 223 dbSNP
rs978676335 229 dbSNP
rs925896832 231 dbSNP
rs1364758042 232 dbSNP
rs1184371457 235 dbSNP
rs1479578976 239 dbSNP
rs1381302415 241 dbSNP
rs1323872131 242 dbSNP
rs1223394160 244 dbSNP
rs537919229 250 dbSNP
rs1439101005 252 dbSNP
rs1281809569 253 dbSNP
rs1351262239 258 dbSNP
rs554347117 267 dbSNP
rs574521612 269 dbSNP
rs1221406403 270 dbSNP
rs1344542974 278 dbSNP
rs760916651 282 dbSNP
rs1406288407 287 dbSNP
rs540226077 288 dbSNP
rs1316955005 290 dbSNP
rs1400665966 299 dbSNP
rs1386223114 304 dbSNP
rs1161842160 305 dbSNP
rs1468552442 307 dbSNP
rs768722630 309 dbSNP
rs1270086114 310 dbSNP
rs756865603 311 dbSNP
rs1200368044 312 dbSNP
rs1348703415 319 dbSNP
rs1479102389 322 dbSNP
rs936645810 333 dbSNP
rs1052463598 334 dbSNP
rs1453567287 340 dbSNP
rs1447527953 342 dbSNP
rs1196415465 343 dbSNP
rs1201612529 349 dbSNP
rs1267939260 349 dbSNP
rs913969287 350 dbSNP
rs15382 357 dbSNP
rs1263427972 358 dbSNP
rs949516974 361 dbSNP
rs1184347118 362 dbSNP
rs1409115097 365 dbSNP
rs1269079751 367 dbSNP
rs1430745504 368 dbSNP
rs1327589185 370 dbSNP
rs764412657 383 dbSNP
rs1450964623 384 dbSNP
rs560814967 385 dbSNP
rs1405779110 395 dbSNP
rs577569307 397 dbSNP
rs1046530644 398 dbSNP
rs1416388641 398 dbSNP
rs1392382055 404 dbSNP
rs1403268834 405 dbSNP
rs1475782483 409 dbSNP
rs1301605792 410 dbSNP
rs1345349003 414 dbSNP
rs1181657765 416 dbSNP
rs1460776370 422 dbSNP
rs1243558511 425 dbSNP
rs1205255595 426 dbSNP
rs15381 436 dbSNP
rs1410958431 438 dbSNP
rs1290803793 442 dbSNP
rs1214715394 446 dbSNP
rs1334021761 449 dbSNP
rs546431753 450 dbSNP
rs1002420982 453 dbSNP
rs1382605969 458 dbSNP
rs1048625048 459 dbSNP
rs1358662329 477 dbSNP
rs1353048651 479 dbSNP
rs1328402783 482 dbSNP
rs1220547559 490 dbSNP
rs888733764 493 dbSNP
rs1161703570 497 dbSNP
rs1483295675 503 dbSNP
rs563068263 513 dbSNP
rs72680046 514 dbSNP
rs1249581628 521 dbSNP
rs1385719703 525 dbSNP
rs1183436025 532 dbSNP
rs1479532782 537 dbSNP
rs1231992950 539 dbSNP
rs531698362 539 dbSNP
rs548797330 539 dbSNP
rs551262981 539 dbSNP
rs1288967039 540 dbSNP
rs998358880 542 dbSNP
rs1187580013 543 dbSNP
rs1369700558 544 dbSNP
rs1230430944 546 dbSNP
rs1028116000 547 dbSNP
rs1471603320 549 dbSNP
rs1279290200 551 dbSNP
rs1162598537 560 dbSNP
rs548696241 561 dbSNP
rs1301383716 564 dbSNP
rs1430842488 565 dbSNP
rs1424079666 576 dbSNP
rs1366187682 578 dbSNP
rs1166793036 579 dbSNP
rs1310270035 581 dbSNP
rs1407006022 593 dbSNP
rs1394900804 594 dbSNP
rs1177503950 597 dbSNP
rs1473377824 598 dbSNP
rs1266312259 600 dbSNP
rs1221180354 601 dbSNP
rs186566342 602 dbSNP
rs1334844276 624 dbSNP
rs781134213 629 dbSNP
rs551336313 635 dbSNP
rs190843251 642 dbSNP
rs566439290 645 dbSNP
rs1284008751 648 dbSNP
rs757738549 651 dbSNP
rs1352618614 657 dbSNP
rs1281604628 658 dbSNP
rs1404453501 660 dbSNP
rs538512094 667 dbSNP
rs552109866 673 dbSNP
rs765774598 674 dbSNP
rs569062453 684 dbSNP
rs1344477201 689 dbSNP
rs1159641375 691 dbSNP
rs55668293 713 dbSNP
rs761797457 713 dbSNP
rs1257644327 722 dbSNP
rs1426819713 729 dbSNP
rs750486060 730 dbSNP
rs182367262 741 dbSNP
rs185946318 748 dbSNP
rs1202731051 749 dbSNP
rs751131797 756 dbSNP
rs1485184980 763 dbSNP
rs1242028191 764 dbSNP
rs564950640 765 dbSNP
rs1331628443 766 dbSNP
rs926767317 767 dbSNP
rs190716215 771 dbSNP
rs1312951810 772 dbSNP
rs1303518223 773 dbSNP
rs1380592700 777 dbSNP
rs1361269881 780 dbSNP
rs1461920486 782 dbSNP
rs1261043816 798 dbSNP
rs1403667202 805 dbSNP
rs1175398349 813 dbSNP
rs1048574529 814 dbSNP
rs1458784374 823 dbSNP
rs1303997231 824 dbSNP
rs1167773598 828 dbSNP
rs888681549 836 dbSNP
rs1261685973 842 dbSNP
rs780845392 855 dbSNP
rs1466600592 856 dbSNP
rs1241716095 859 dbSNP
rs533776196 867 dbSNP
rs1036629780 868 dbSNP
rs1483735780 878 dbSNP
rs1257981329 881 dbSNP
rs1225387177 883 dbSNP
rs1306971570 885 dbSNP
rs1298365361 886 dbSNP
rs1450595899 889 dbSNP
rs756284741 891 dbSNP
rs1335852734 893 dbSNP
rs1336198930 893 dbSNP
rs1396376535 896 dbSNP
rs900845380 898 dbSNP
rs1296056948 902 dbSNP
rs1366141031 903 dbSNP
rs1373172469 911 dbSNP
rs1169893120 912 dbSNP
rs1437566558 915 dbSNP
rs1378291170 917 dbSNP
rs747798303 918 dbSNP
rs1258592754 924 dbSNP
rs1424732797 924 dbSNP
rs1194320335 925 dbSNP
rs183371046 933 dbSNP
rs187956517 935 dbSNP
rs1028479793 938 dbSNP
rs1275454496 947 dbSNP
rs1207315872 949 dbSNP
rs1233851743 950 dbSNP
rs1314283099 953 dbSNP
rs1257728389 958 dbSNP
rs1245292744 963 dbSNP
rs1342015638 981 dbSNP
rs1321360285 992 dbSNP
rs1370718690 995 dbSNP
rs1309330420 998 dbSNP
rs1202429209 1015 dbSNP
rs1237009079 1016 dbSNP
rs546502089 1017 dbSNP
rs889571302 1021 dbSNP
rs1000010581 1024 dbSNP
rs1163482713 1052 dbSNP
rs556561734 1055 dbSNP
rs1473384913 1065 dbSNP
rs1032863247 1076 dbSNP
rs1180027034 1078 dbSNP
rs955911670 1092 dbSNP
rs755771394 1098 dbSNP
rs988734394 1100 dbSNP
rs1020914496 1122 dbSNP
rs1489870532 1126 dbSNP
rs1184484332 1128 dbSNP
rs576615115 1128 dbSNP
rs1260072852 1129 dbSNP
rs1428348001 1132 dbSNP
rs1258742959 1142 dbSNP
rs982168714 1144 dbSNP
rs542052987 1163 dbSNP
rs1177390432 1170 dbSNP
rs868023053 1171 dbSNP
rs1402614973 1178 dbSNP
rs117302051 1184 dbSNP
rs527738749 1185 dbSNP
rs1323604630 1187 dbSNP
rs1406468031 1197 dbSNP
rs1393446497 1200 dbSNP
rs145059127 1202 dbSNP
rs1457036593 1209 dbSNP
rs984232639 1214 dbSNP
rs910068302 1216 dbSNP
rs1479549410 1221 dbSNP
rs1268307376 1226 dbSNP
rs1287383790 1228 dbSNP
rs1453269655 1229 dbSNP
rs1259557675 1231 dbSNP
rs1204376006 1239 dbSNP
rs1360974294 1239 dbSNP
rs1387095919 1247 dbSNP
rs940244931 1251 dbSNP
rs1037694460 1256 dbSNP
rs564112546 1257 dbSNP
rs1274944781 1260 dbSNP
rs3217662 1263 dbSNP
rs901456683 1263 dbSNP
rs369138632 1264 dbSNP
rs1316807988 1267 dbSNP
rs1389865621 1270 dbSNP
rs1434888054 1270 dbSNP
rs933636973 1270 dbSNP
rs1468433586 1272 dbSNP
rs1424654298 1275 dbSNP
rs754175958 1277 dbSNP
rs1479031355 1280 dbSNP
rs1371314436 1281 dbSNP
rs1187879219 1283 dbSNP
rs533135797 1288 dbSNP
rs1201479654 1290 dbSNP
rs192253781 1293 dbSNP
rs891636459 1294 dbSNP
rs1330678263 1295 dbSNP
rs1220489078 1297 dbSNP
rs1213186105 1298 dbSNP
rs546848830 1305 dbSNP
rs1269027837 1306 dbSNP
rs1228348532 1307 dbSNP
rs182736285 1309 dbSNP
rs1192090057 1319 dbSNP
rs1450896169 1321 dbSNP
rs531582622 1325 dbSNP
rs1358871168 1327 dbSNP
rs1335079971 1328 dbSNP
rs1416333521 1329 dbSNP
rs1394463217 1333 dbSNP
rs1167968913 1334 dbSNP
rs1450023166 1335 dbSNP
rs1391935867 1336 dbSNP
rs774329227 1340 dbSNP
rs1181601745 1341 dbSNP
rs1472327455 1346 dbSNP
rs1237739519 1350 dbSNP
rs745797826 1351 dbSNP
rs1211824570 1352 dbSNP
rs187777195 1355 dbSNP
rs772174902 1365 dbSNP
rs1479705643 1368 dbSNP
rs775615301 1373 dbSNP
rs1033705203 1374 dbSNP
rs1412766230 1376 dbSNP
rs75618848 1383 dbSNP
rs1378930737 1386 dbSNP
rs984180444 1389 dbSNP
rs1450472654 1391 dbSNP
rs1415562672 1394 dbSNP
rs910016131 1404 dbSNP
rs961515634 1405 dbSNP
rs1157051809 1411 dbSNP
rs1344777437 1421 dbSNP
rs972952223 1430 dbSNP
rs1161568519 1431 dbSNP
rs533841476 1432 dbSNP
rs934277463 1438 dbSNP
rs1363554401 1441 dbSNP
rs566697953 1449 dbSNP
rs1250594976 1453 dbSNP
rs1182357107 1457 dbSNP
rs529074686 1458 dbSNP
rs1351770037 1459 dbSNP
rs1288899400 1460 dbSNP
rs553878753 1462 dbSNP
rs548912813 1466 dbSNP
rs910897772 1471 dbSNP
rs935697382 1475 dbSNP
rs1221539234 1482 dbSNP
rs764340399 1508 dbSNP
rs1305701074 1513 dbSNP
rs570493819 1521 dbSNP
rs1287934581 1537 dbSNP
rs568925873 1550 dbSNP
rs1054202928 1554 dbSNP
rs762214821 1557 dbSNP
rs1352426863 1564 dbSNP
rs1301325305 1566 dbSNP
rs1223322350 1572 dbSNP
rs539051494 1573 dbSNP
rs1350338677 1576 dbSNP
rs1166727334 1582 dbSNP
rs891585645 1586 dbSNP
rs765686676 1590 dbSNP
rs1159474192 1596 dbSNP
rs1294397451 1601 dbSNP
rs560637464 1606 dbSNP
rs1045593709 1614 dbSNP
rs537960015 1624 dbSNP
rs1001473822 1629 dbSNP
rs868411911 1639 dbSNP
rs1224296449 1645 dbSNP
rs542418640 1646 dbSNP
rs1267837884 1647 dbSNP
rs555505994 1649 dbSNP
rs557922432 1651 dbSNP
rs572228711 1655 dbSNP
rs1331401945 1665 dbSNP
rs1281468963 1670 dbSNP
rs1064615 1693 dbSNP
rs1424607385 1699 dbSNP
rs1016958556 1700 dbSNP
rs961463355 1704 dbSNP
rs1387673968 1713 dbSNP
rs973286770 1718 dbSNP
rs1458503174 1719 dbSNP
rs767188172 1722 dbSNP
rs192393000 1723 dbSNP
rs1383134843 1731 dbSNP
rs140339761 1734 dbSNP
rs1308446868 1737 dbSNP
rs11552919 1738 dbSNP
rs1356161129 1742 dbSNP
rs533819997 1754 dbSNP
rs1297045033 1760 dbSNP
rs1379351053 1761 dbSNP
rs562805900 1765 dbSNP
rs1247799128 1767 dbSNP
rs1209686308 1771 dbSNP
rs1466463755 1776 dbSNP
rs375413551 1778 dbSNP
rs1312823649 1779 dbSNP
rs548383619 1780 dbSNP
rs985732671 1784 dbSNP
rs1364301035 1794 dbSNP
rs1298142271 1801 dbSNP
rs1437005375 1807 dbSNP
rs911516465 1809 dbSNP
rs1301880306 1811 dbSNP
rs1358324984 1812 dbSNP
rs1466191892 1818 dbSNP
rs1245637959 1821 dbSNP
rs1167614484 1822 dbSNP
rs1448214255 1828 dbSNP
rs1275811335 1832 dbSNP
rs1439991448 1839 dbSNP
rs935645336 1846 dbSNP
rs1200115820 1849 dbSNP
rs1254392923 1849 dbSNP
rs556070544 1850 dbSNP
rs748746485 1852 dbSNP
rs912968917 1852 dbSNP
rs112755109 1853 dbSNP
rs1275231462 1856 dbSNP
rs527464763 1868 dbSNP
rs547553457 1877 dbSNP
rs570557132 1879 dbSNP
rs1383581468 1885 dbSNP
rs1396250787 1886 dbSNP
rs1444264290 1888 dbSNP
rs1428531625 1894 dbSNP
rs1001821249 1903 dbSNP
rs1169760336 1914 dbSNP
rs1055637832 1917 dbSNP
rs753419490 1919 dbSNP
rs1169725749 1920 dbSNP
rs1359202760 1927 dbSNP
rs1258525961 1928 dbSNP
rs1180153223 1940 dbSNP
rs369469022 1945 dbSNP
rs1454077698 1947 dbSNP
rs757109988 1951 dbSNP
rs539420370 1952 dbSNP
rs1264657589 1955 dbSNP
rs114990188 1965 dbSNP
rs897216254 1971 dbSNP
rs1286039244 1978 dbSNP
rs994270347 1982 dbSNP
rs778644482 1988 dbSNP
rs1271128851 1993 dbSNP
rs1393660031 1994 dbSNP
rs570343509 2003 dbSNP
rs554438142 2008 dbSNP
rs1341978292 2012 dbSNP
rs1163107161 2013 dbSNP
rs1458703581 2021 dbSNP
rs1213298814 2026 dbSNP
rs1370466915 2031 dbSNP
rs1030204017 2041 dbSNP
rs1272977876 2042 dbSNP
rs1472362047 2046 dbSNP
rs1252628078 2047 dbSNP
rs1184370330 2048 dbSNP
rs1313331769 2050 dbSNP
rs1266588051 2054 dbSNP
rs1210257742 2055 dbSNP
rs535745763 2062 dbSNP
rs1489328535 2064 dbSNP
rs375906435 2070 dbSNP
rs1241378133 2075 dbSNP
rs745850978 2077 dbSNP
rs1289741678 2079 dbSNP
rs1329350406 2079 dbSNP
rs1460989174 2080 dbSNP
rs141442870 2081 dbSNP
rs1189528635 2085 dbSNP
rs1230432219 2092 dbSNP
rs1329896971 2094 dbSNP
rs1323448697 2095 dbSNP
rs1387804605 2097 dbSNP
rs1242843764 2101 dbSNP
rs955564973 2104 dbSNP
rs1474326070 2105 dbSNP
rs986065889 2106 dbSNP
rs771945758 2110 dbSNP
rs1018524966 2111 dbSNP
rs1425724296 2116 dbSNP
rs1470923238 2118 dbSNP
rs1377052682 2123 dbSNP
rs1199521303 2127 dbSNP
rs1453216396 2134 dbSNP
rs184420714 2136 dbSNP
rs1465120984 2139 dbSNP
rs1404800968 2143 dbSNP
rs989792320 2151 dbSNP
rs1457428113 2158 dbSNP
rs780026149 2169 dbSNP
rs1328534688 2180 dbSNP
rs912916600 2187 dbSNP
rs1234604147 2190 dbSNP
rs1429016768 2193 dbSNP
rs1295943806 2195 dbSNP
rs945754093 2205 dbSNP
rs1270006874 2206 dbSNP
rs1346636476 2207 dbSNP
rs138151813 2223 dbSNP
rs1225891554 2235 dbSNP
rs1434827090 2237 dbSNP
rs981219228 2240 dbSNP
rs928415624 2242 dbSNP
rs1320511681 2243 dbSNP
rs1412937023 2246 dbSNP
rs534880102 2248 dbSNP
rs11552918 2257 dbSNP
rs1322997787 2263 dbSNP
rs1455576271 2264 dbSNP
rs1388243689 2269 dbSNP
rs1187741417 2274 dbSNP
rs1449820844 2275 dbSNP
rs373024767 2276 dbSNP
rs1286556496 2279 dbSNP
rs887670612 2280 dbSNP
rs1038298532 2281 dbSNP
rs941964004 2281 dbSNP
rs867660057 2285 dbSNP
rs897156520 2289 dbSNP
rs574262939 2294 dbSNP
rs1228195026 2299 dbSNP
rs994614433 2302 dbSNP
rs1272251094 2312 dbSNP
rs543162553 2312 dbSNP
rs1192129115 2314 dbSNP
rs1247071866 2320 dbSNP
rs1029738610 2323 dbSNP
rs1481372607 2335 dbSNP
rs1197255907 2337 dbSNP
rs1368683929 2341 dbSNP
rs1167906031 2342 dbSNP
rs891234088 2343 dbSNP
rs1421392807 2362 dbSNP
rs1179839972 2366 dbSNP
rs557878288 2366 dbSNP
rs1007045920 2368 dbSNP
rs1237696403 2370 dbSNP
rs1189499231 2373 dbSNP
rs1472654244 2376 dbSNP
rs1018472767 2377 dbSNP
rs140492524 2378 dbSNP
rs1343416490 2382 dbSNP
rs1382266151 2382 dbSNP
rs1019924208 2387 dbSNP
rs768776096 2388 dbSNP
rs868558421 2390 dbSNP
rs1366653713 2392 dbSNP
rs981550997 2398 dbSNP
rs1284977641 2403 dbSNP
rs928383713 2406 dbSNP
rs556504623 2410 dbSNP
rs1281986446 2422 dbSNP
rs1410368861 2425 dbSNP
rs991252007 2428 dbSNP
rs1162514009 2430 dbSNP
rs200515021 2439 dbSNP
rs1404521940 2443 dbSNP
rs1414136598 2465 dbSNP
rs1166677066 2469 dbSNP
rs1345468432 2471 dbSNP
rs1471383717 2475 dbSNP
rs909057279 2484 dbSNP
rs1239798838 2492 dbSNP
rs543810832 2498 dbSNP
rs941911677 2503 dbSNP
rs1481279975 2518 dbSNP
rs1235071342 2519 dbSNP
rs1219888558 2523 dbSNP
rs1451413690 2531 dbSNP
rs1036233929 2532 dbSNP
rs897769877 2535 dbSNP
rs762126683 2541 dbSNP
rs1287871235 2543 dbSNP
rs1229075193 2549 dbSNP
rs1375500070 2551 dbSNP
rs553513509 2551 dbSNP
rs369073621 2559 dbSNP
rs1204839257 2565 dbSNP
rs1292208703 2574 dbSNP
rs1336529393 2575 dbSNP
rs1490792621 2577 dbSNP
rs770322436 2582 dbSNP
rs1455330670 2586 dbSNP
rs1410752672 2592 dbSNP
rs1159308878 2596 dbSNP
rs780686962 2606 dbSNP
rs1483356471 2609 dbSNP
rs1422384542 2612 dbSNP
rs773692151 2613 dbSNP
rs1361569338 2623 dbSNP
rs1477948442 2630 dbSNP
rs1006993609 2632 dbSNP
rs763577743 2637 dbSNP
rs1463762602 2649 dbSNP
rs766841311 2651 dbSNP
rs1216656950 2654 dbSNP
rs1318838945 2657 dbSNP
rs745403442 2659 dbSNP
rs1426993285 2660 dbSNP
rs1368144953 2664 dbSNP
rs1301700247 2668 dbSNP
rs1011793883 2670 dbSNP
rs1432631825 2676 dbSNP
rs1365437075 2683 dbSNP
rs1387514400 2689 dbSNP
rs1320837521 2691 dbSNP
rs35091979 2693 dbSNP
rs1222854323 2694 dbSNP
rs1260985983 2698 dbSNP
rs563503027 2701 dbSNP
rs1174673358 2705 dbSNP
rs576310474 2710 dbSNP
rs1396202369 2713 dbSNP
rs576096342 2724 dbSNP
rs1195935337 2731 dbSNP
rs1448025516 2734 dbSNP
rs1247747504 2739 dbSNP
rs1330972137 2753 dbSNP
rs1334113617 2755 dbSNP
rs542177000 2760 dbSNP
rs1486935293 2765 dbSNP
rs1254349887 2781 dbSNP
rs3179189 2784 dbSNP
rs1316039373 2786 dbSNP
rs1319790991 2789 dbSNP
rs1209491531 2791 dbSNP
rs1348588029 2791 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_001663 | 3UTR | AAAUUACUAAAAGGUUUACUUUGUUCAUUAAUAAAACAUUUAACAAUUCAAAUUAUAUGCACCUUUUACCUAGUUGAAAAAAAUACACAUUCCUGUUUUCACAUUAUAGCAACUGAUUAAGCUGAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_001663 | 3UTR | AAUUACUAAAAGGUUUACUUUGUUCAUUAAUAAAACAUUUAACAAUUCAAAUUAUAUGCACCUUUUACCUAGUUGAAAAAAAUACACAUUCCUGUUUUCACAUUAUAGCAACUGAUUAAGCUGAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_001663 | 3UTR | UUUACUUUGUUCAUUAAUAAAACAUUUAACAAUUCAAAUUAUAUGCACCUUUUACCUAGUUGAAAAAAAUACACAUUCCUGUUUUCACAUUAUAGCAACUGAUUAAGCUGAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_001663 | 3UTR | AAGGUUUACUUUGUUCAUUAAUAAAACAUUUAACAAUUCAAAUUAUAUGCACCUUUUACCUAGUUGAAAAAAAUACACAUUCCUGUUUUCACAUUAUAGCAACUGAUUAAGCUGAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_001663 | 3UTR | UUCAUUAAUAAAACAUUUAACAAUUCAAAUUAUAUGCACCUUUUACCUAGUUGAAAAAAAUACACAUUCCUGUUUUCACAUUAUAGCAACUGAUUAAGCUGAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000298316.5 | 3UTR | AAAACAUUUAACAAUUCAAAUUAUAUGCACCUUUUACC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
134 hsa-miR-4477a Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055843 PLEKHA1 pleckstrin homology domain containing A1 2 10
MIRT061259 AMOTL1 angiomotin like 1 2 4
MIRT071895 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT076933 MLLT6 MLLT6, PHD finger containing 2 2
MIRT078652 ICT1 mitochondrial ribosomal protein L58 2 2
MIRT083633 PRNP prion protein 2 2
MIRT091629 RPL15 ribosomal protein L15 2 4
MIRT107076 PPP6C protein phosphatase 6 catalytic subunit 2 2
MIRT111191 TRIM33 tripartite motif containing 33 2 2
MIRT114515 ARF6 ADP ribosylation factor 6 2 2
MIRT175250 PSAT1 phosphoserine aminotransferase 1 2 4
MIRT175430 ACSL4 acyl-CoA synthetase long chain family member 4 2 2
MIRT178687 FAM102B family with sequence similarity 102 member B 2 2
MIRT189771 CDADC1 cytidine and dCMP deaminase domain containing 1 2 2
MIRT229450 RPL10 ribosomal protein L10 2 2
MIRT244899 PHF6 PHD finger protein 6 2 2
MIRT249189 AKIRIN1 akirin 1 2 8
MIRT261134 TRIM8 tripartite motif containing 8 2 2
MIRT275561 ZIC5 Zic family member 5 2 4
MIRT275652 ABHD13 abhydrolase domain containing 13 2 2
MIRT288082 UTP18 UTP18, small subunit processome component 2 2
MIRT303605 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT307924 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT316787 FOXC1 forkhead box C1 2 2
MIRT326910 SCML2 Scm polycomb group protein like 2 2 2
MIRT327713 SPIN4 spindlin family member 4 2 2
MIRT331632 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT342506 TMOD3 tropomodulin 3 2 4
MIRT354470 LRRC58 leucine rich repeat containing 58 2 2
MIRT378711 TRIM24 tripartite motif containing 24 2 2
MIRT407462 YDJC YdjC chitooligosaccharide deacetylase homolog 2 2
MIRT408226 SMAD5 SMAD family member 5 2 4
MIRT441824 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT442783 CHD8 chromodomain helicase DNA binding protein 8 2 2
MIRT443184 NHS NHS actin remodeling regulator 2 4
MIRT447615 CUL3 cullin 3 2 2
MIRT450156 DSEL dermatan sulfate epimerase-like 2 2
MIRT454801 NEDD9 neural precursor cell expressed, developmentally down-regulated 9 2 2
MIRT463050 ZNF644 zinc finger protein 644 2 2
MIRT467400 SOCS3 suppressor of cytokine signaling 3 2 2
MIRT468174 SGMS1 sphingomyelin synthase 1 2 2
MIRT468949 RPS14 ribosomal protein S14 2 6
MIRT469835 R3HDM4 R3H domain containing 4 2 2
MIRT470724 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT470902 PLIN3 perilipin 3 2 2
MIRT472467 NAPG NSF attachment protein gamma 2 12
MIRT472602 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT492350 SEMA7A semaphorin 7A (John Milton Hagen blood group) 2 2
MIRT493840 FOXN3 forkhead box N3 2 4
MIRT496318 DOCK9 dedicator of cytokinesis 9 2 2
MIRT500159 CLEC2D C-type lectin domain family 2 member D 2 8
MIRT500535 XPO4 exportin 4 2 4
MIRT503916 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT504003 SAT1 spermidine/spermine N1-acetyltransferase 1 2 4
MIRT505647 SHMT1 serine hydroxymethyltransferase 1 2 4
MIRT506574 MIER3 MIER family member 3 2 4
MIRT506945 HS3ST3B1 heparan sulfate-glucosamine 3-sulfotransferase 3B1 2 4
MIRT508196 RPS19 ribosomal protein S19 2 6
MIRT511417 HSPA13 heat shock protein family A (Hsp70) member 13 2 4
MIRT512326 ACTB actin beta 2 4
MIRT515376 RPL7 ribosomal protein L7 2 2
MIRT520422 TUBG1 tubulin gamma 1 2 4
MIRT524844 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT526320 UGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus 2 2
MIRT526561 UGT2A2 UDP glucuronosyltransferase family 2 member A2 2 2
MIRT528027 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT529874 RBM43 RNA binding motif protein 43 2 2
MIRT530826 CLEC4D C-type lectin domain family 4 member D 2 2
MIRT531334 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT532068 CCNB1 cyclin B1 2 4
MIRT532870 ZNF566 zinc finger protein 566 2 2
MIRT535580 NUP35 nucleoporin 35 2 2
MIRT537644 ERGIC2 ERGIC and golgi 2 2 4
MIRT537725 ELAVL2 ELAV like RNA binding protein 2 2 2
MIRT538894 BRI3BP BRI3 binding protein 2 2
MIRT538945 BMP2K BMP2 inducible kinase 2 2
MIRT540703 PDPK1 3-phosphoinositide dependent protein kinase 1 2 4
MIRT543210 TMEM117 transmembrane protein 117 2 3
MIRT543357 LYRM2 LYR motif containing 2 2 2
MIRT544905 CLSPN claspin 2 2
MIRT545532 ARF3 ADP ribosylation factor 3 2 2
MIRT546446 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT546882 PURB purine rich element binding protein B 2 4
MIRT547440 MED13 mediator complex subunit 13 2 2
MIRT548027 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548673 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 2
MIRT550435 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT551850 RPS3 ribosomal protein S3 2 2
MIRT556072 MRFAP1 Morf4 family associated protein 1 2 2
MIRT556554 LIMS1 LIM zinc finger domain containing 1 2 2
MIRT557132 HOXA13 homeobox A13 2 2
MIRT557875 FEM1B fem-1 homolog B 2 4
MIRT558146 ELK4 ELK4, ETS transcription factor 2 2
MIRT558862 CD2AP CD2 associated protein 2 2
MIRT558884 CCNE1 cyclin E1 2 4
MIRT558907 CBX5 chromobox 5 2 2
MIRT559175 BRAP BRCA1 associated protein 2 2
MIRT560860 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561729 PPIF peptidylprolyl isomerase F 2 2
MIRT564024 CEBPB CCAAT/enhancer binding protein beta 2 2
MIRT564366 TRMT5 tRNA methyltransferase 5 2 2
MIRT564609 ZNF703 zinc finger protein 703 2 2
MIRT565494 AZF1 azoospermia factor 1 2 2
MIRT565577 SLC6A8 solute carrier family 6 member 8 2 2
MIRT566947 LEPROT leptin receptor overlapping transcript 2 2
MIRT567293 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT567308 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT568048 CHSY1 chondroitin sulfate synthase 1 2 2
MIRT571807 PHF19 PHD finger protein 19 2 2
MIRT609234 RBM23 RNA binding motif protein 23 2 2
MIRT610328 SSX5 SSX family member 5 2 2
MIRT611428 UGT8 UDP glycosyltransferase 8 2 4
MIRT611709 SLFN13 schlafen family member 13 2 2
MIRT612069 CEP135 centrosomal protein 135 2 4
MIRT617676 JRKL JRK like 2 2
MIRT623684 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT635634 PRR15L proline rich 15 like 2 2
MIRT636422 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT637011 GPATCH11 G-patch domain containing 11 2 2
MIRT644150 C4orf3 chromosome 4 open reading frame 3 2 2
MIRT648562 MEMO1 mediator of cell motility 1 2 2
MIRT650752 WNT16 Wnt family member 16 2 2
MIRT651914 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT653556 SLC38A7 solute carrier family 38 member 7 2 2
MIRT692277 XRN2 5'-3' exoribonuclease 2 2 2
MIRT697650 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT703876 ERCC6 ERCC excision repair 6, chromatin remodeling factor 2 2
MIRT704615 CLIP1 CAP-Gly domain containing linker protein 1 2 2
MIRT708562 BBOX1 gamma-butyrobetaine hydroxylase 1 2 2
MIRT709614 KBTBD6 kelch repeat and BTB domain containing 6 2 2
MIRT712955 SGCD sarcoglycan delta 2 2
MIRT713502 DCAF17 DDB1 and CUL4 associated factor 17 2 2
MIRT720239 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT724255 GLUD1 glutamate dehydrogenase 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4477a Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-4477a Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4477a Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)

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