miRTarBase - #MIRT116209


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pre-miRNA Information
pre-miRNA hsa-mir-1277   
Genomic Coordinates chrX: 118386394 - 118386471
Synonyms MIRN1277, hsa-mir-1277, MIR1277
Description Homo sapiens miR-1277 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1277-5p
Sequence 8| AAAUAUAUAUAUAUAUGUACGUAU |31
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 15 X + 118386415 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs746499482 2 dbSNP
rs770518695 2 dbSNP
rs1198178052 3 dbSNP
rs781269752 6 dbSNP
rs746163811 8 dbSNP
rs1190574471 13 dbSNP
rs1170658098 19 dbSNP
rs776234383 22 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol NUFIP2   
Synonyms 182-FIP, 82-FIP, FIP-82, PIG1
Description NUFIP2, FMR1 interacting protein 2
Transcript NM_020772   
Expression
Putative miRNA Targets on NUFIP2
3'UTR of NUFIP2
(miRNA target sites are highlighted)		 
>NUFIP2|NM_020772|3'UTR
   1 AGGACCAGACTGCCTATTCGTAACCTTTCTGCAGCATTAGAGCCATCGTTCATGGGGGACACAAGGCTTTTATGCTCCTA
  81 GATCTTCAACGCAGCAGAGGAACCATAAGTAGAATCACAGGATAATATATACAAATATATATATATACATATATATATAT
 161 ATAGTTATTTAAAAAAGGCAACTGAAAGTAATTAGACTTCTTAAGGAATCAAATTTATTTCAAGAGACTACACATGGTTA
 241 TTTAATCTCCGGTACTGAATAGGTTTTTTTTCTTCTGTTAGTTTTTGTTTTTAAGTGTGAATGCAAGTGATTAATGAATA
 321 CAGACTTAACAAGTGTGGTTCTAAAGTTCCTGCTGTCATCAACTTGGGCAACAAATGACCCACTGGAAAGGCAAATCCAC
 401 TTAAAAGATCTCTGTATCTTGTTCTGTGACTGAAGTGATACACTAATCACGGGGAACCCAGAATGATTCAACATTTTCCC
 481 CCCACTCCTCCCTTGATCTTTTTGGTTTTACTTTAATTAAGCCCTGCGAGAATGCTGGATAAATGCCTTGAAGTTAGCAG
 561 GGTGTATTTTTTTAGCGAATATGATTTGCATGTCTTGCCAGGAGTTAAGCGGCCTCTGGGGTGTTGGGGAAATACTTTAT
 641 TTCTTTCCATTTATTTTTTGTGGGGCGGGGATAGGGGAGGGCATTGAAGTTCTACAATTCTGGAATAGTTAGTTGATGGT
 721 ACATAGTTAACTTGGCTTCGGTTACATATTGGACTTTAACAACTGAAGAATCTATGCGTGTCATTTAAAGAAAAGTTGCA
 801 GAACAAGCAATTGGCTTAGATATACAATCTGGAAAAATATTCCTGTGCCCATATTTTAATGTAATTGTATAACTGGGAGC
 881 AAAAATATATTCTGCTTTTCAACTGTAGGTGCTCCAGACTTGCTCTCCGTCACTAACACTAAATGTGCTGTTTTCCTTGT
 961 TTTTCATCAAACATTTAAGACAAACTTAGACCTTTCTGTAAATTATCTTTTAATTTCTCAGCAAAATCTAAAAGGGGAAG
1041 AAAAAAGTCCATGAAAACTAAAACTTTTCATGTTTTTAGCCAGTGAGAAGATAATAAACCCTGACTGTAGAAGGTGTGTT
1121 TTCATGCAAACTATACTTCTGAGCTTGTTAGCTTCTAATTATATCTTAATAAATATATTTTATTACTAGAGCAAGATGGG
1201 TTTTTAAGGAAAATAATGTGAAATTCTGGAAATTTTCTTTGGGGCAGAGAAGAGCATTAGCCCTGTCTTATCATTACATT
1281 GCCATCCTGTTGCACTGCAGCTTGTGTATAGCATGCTAAAATAAATTTTTGTGTGTGTGTGCAGAAATTAAGGGTCCAAT
1361 TGAGATTGGGTGATGTTAGTAACATAATAACAAGTTGTCTGGCCTGACACAGCATCACATCACACACACAGAAATTAGTA
1441 TATCCATGTATGTCAAATACAGGTTAAAATATCAGGGCATTTATATAAAGAGTTGTAGTCTTCTGATAAAAGTAGACTGG
1521 ATCCCCTGGGGTATTTGGGGAGAAAGTAACTACTTTGGCTCTACCCCTAGAAATGTCCAGTTTTGAGTGACTGTAGTATG
1601 GATGGGTTTTCTTGTTTTGTTGATTATTTGAGGCTTTTAAAACAAGTAGTTCATGAAAGAAGCTGTTGGACTCAACATAG
1681 AGTAGAGTAACTATCTTTTTAGTCTGGATTTCTGCCCTGCTTAGATTTTAAAAGTATAAGCATGGATTGCCAATTCCACT
1761 TGATGTAAACAAAACTTTTTTTTATACATAATATATATATATATATATAAAATAACTTATTGTATCAGTCCAGGTTCAGA
1841 AACTTGTGGTAGGCCAGTTCCAGATAGTTTCATTTCACCTGTAAACTGTATCACTTTGACTGATATTGTAATTTTCAAAT
1921 GTATAATATGTTTACAGATGTGCCCTGCATTTAGTCTGCCTTGTTCCTATTTTGATTTTTGTTGAGTCTCCTGCCTGCTT
2001 GCCAAAAGCTAGGATGCTTCAGGCCCATGTACAATTGAAAGCAGAGGCATCCTTGAGCTTTAAAGCATTGAACAAACTGG
2081 AAAATGCAACATACCACATAACTGAAGTGAAAAAAGTCTGTGTTTTTGTGTTTTTTTAAATAAAAATTTTCAAAAAGTTA
2161 AAAAAAAAGACATATAAGGTTGATTAAAGGGAAAAAAGGCTCCAGTTTGTTTTACAGGTTTTAAAGTTCTGCTGTGTGTT
2241 CAATTGCCTTGTGTAACCACTTGTCGCCTTAGGGCCAGATTCCCCTCTCTAGTCCCCTTTTTTAAATGTCCATTTTGCTT
2321 GCCTGGAATTTTAAAGTTCTTCCGTCTCACAACTCACAAGAAACTTTCTGGGTTTGTGACATACAGAGGTTGAATTGAGT
2401 ATATATTTGAAAAGGAAAAAACAAAAAACAAACCCAGACCCCACCTGAATTGGGCTTTTTAACTTAGAAGCAACACTTGA
2481 TTAAACATCTTTAGAAAGCTATTGCTTTTCTAATTTCCTTCCATATCCCTCAGGCCTCAGTGTTCAGAGAAGCCAAAAAG
2561 AATGTATCACTTCTCTGTCTGTCCAAAGGTTTTTGAGAGTCTCACTTCTAAATGAAACAATGCAACATTTCACTTTGATT
2641 TCTCCACTGAAATTTCCTTGATTATATGGTTAGAGGTATGTAGTTAGGAATGTCTGTTAACTTTCTGAGAACCCTAGTGC
2721 CCCATCATATTAACTGTCAGTATTTTGGGGGCATTAGGTTAATAGACTTAATTGCCTAGGTACAAGCAGGACTTTGGGAC
2801 AAATCTCTTTGTGCTGTTTGGTAACACTTAACTCTATTTGTTGCAATCTTTCTCCTTAGGTCCTCACACAATTCCTTACA
2881 GAGCACTTATTAAAAAAAAATCTTAAGAGTTGATCTGTTTTCTGATTATTTTGTGTAAGCTTCTAAACAAACTTCAGCTG
2961 TGATTAATTTAGCACATTTAAATAACGTGTTATTGTTTGGTATAAAGAATTTTCCTTCAACTCAGAGTATTAGTACTGTA
3041 GCATAAACCAAATACAGTCTAGAGGGGATTTTTAACATCCCTCCATTATAAAGACTGAAAAAGGGGTGTGTGTGTGTGTG
3121 TGTGTTTATGTATGTATGTATGTGTGTGTGAGGAAAAGATGGAGATATTAAAAATTAGTAAATGAATGTGTATAAGACAT
3201 TAGTATTCAGAGAATGAACTTGTATTTATTTTGTGCCATTTGTTTTCATTACACAGAAAAAAGTCAGGTGGTTTAAATCC
3281 TTAAAAGGGTAGTATTGAAAAATGGCACTAAGAATGAAATTATGACCTATTTTTTTAATAGCTATGAAGATACTAATTAT
3361 GGGTGAAGATTTCTTTTTAAATCTGTTTTGATTATTGTAGGCTTCTGTGTCACATACCACTCTTGTAGGTGTCCTCAATA
3441 ATCCCCTTTTCCCACAAAATACACAGGGTGTATTATCTTTCTCTTTATTCACCCCCACTTTGCTGAACTGAAGTTAATTA
3521 CATAGCCTTTCTTCTAACCTCCTTAGTAATGAACCTTCACATAAAGTGTATTTACAGCGTCTGTGGTAGCCAGCCCTTCC
3601 TCCTCTACTTTCTAGGAGGGGATAGCCAATAACTAGGAATTTAATGACAGATTTTTTTTTCTTTGAAATAAATGGCCAGA
3681 GTTTCTCCATTTTAGAATTTTGTTGTCCTCCTTAATCATCTGCTTACCTAGTCATTACTCAATCTGCAGAAACTTCATAA
3761 AGGAAAAGTGCTGCATTGTTTTTACAAATAACAGTTTGTAGGGAAAATATGACAAACCTCAACTATGGGAGTTGTCCACA
3841 ATACAAAATTTTGAAAAAACATTACATAGTGATAATATCATACTTGGTTGTTAGGCTTGTTGCTTCCCCACATCAGAGGC
3921 ATCTAATGATTTATCTTTTGTAATTGCTGTGAACTTTTTTAAATAAGCCATTTAGTGTGAAATTGTCATGTATCAAATGG
4001 CTATTGGAAATGGACTTTACTCAATTTTAATTCCACTGTAAATAAGGACGGAGTCATTCCTACAAGGCTCTCTTCAGAGA
4081 AATAGATTAAAAGTCCAATTTCCAGGTATTATTAGTATAGTTATGCCGCTGGGCCACATCCTCAACAACAGCTGATCCCT
4161 CTTGTATAAATATGTTAACTGTGCAGAACAGTTATGTTATGGGACAAATATAATGGTCATTATGGTCAGATTGGTTGATG
4241 CCACACCAGTCAAGGTAGAGTCTGATAGGGCAGTATCTTAATAACCCTACCCATGACTTAACTGTTGGATTTGAAAGGAA
4321 AACGTAGGATTTGCTCTTGTCCCCTTACCCGCCACAAAATTTTGATAATTTGTTTAAAAGGGAGAGGCAGAGGAAAAGAC
4401 TAGAAGCATAAATAGCTGCTTTAGGTTTGCCAGAGGCACATAGCTTAACATTAGTTCTTAATATCGATGTTATTTTTACT
4481 AATGTAATTAATCAACAGAGCACCAAGATTCTTTCATGGTGAAAAGGGTGGGCTTCTGTTTTGGTATCTTAAAATGTTTC
4561 TTTTAAAATATACATCACCTGTGTGAGAACCAGGACCACCTGGGAGAGTGATGAATCATTGGCTCCACTCAAAAGCATTG
4641 CTTTACTGAGTTTTAAATTTCACACTGTTTTGCCGCTCAAGAAAGGTCTTAAAGTAGTTAAAGGATGCCAGCAATAGTGC
4721 GAATAGAATTTTCGGTTGTCTGCATAATAAAAACACCCATTGCAGCATGATTGGTATGTTGCTCTTGCATTATTGGGAAT
4801 GGTAAATCAGTTATGGGCTAGAAACTATGGAATGGCCGTCCTCATATGTGATGGGATTGCTGATTCAGACTTCCCTATTT
4881 TCCATACAATTTTGTTATGTGCAGAGTTCTAAAGCCATTTTATAATACTGCAGTATCCCCCCCCCCCCCACCTTTTTTTT
4961 TTTGAGACGGACTGTCTGTTGCCCAGGCTGGAGTACAGTGGCGCAATCTTGGCTCACTGCAACCTCCACCTCCCTGGTTC
5041 AAGCAATTCCCCTGCCTCAGCCTCCCATGTAGCTGGGATTACGGGCGCACACCACCACACCTGGCTAATTTGTATTCTTA
5121 GTAGAGACGGGGTTTCACCATGTTGACCAGACTGGTCTCGAACTCCTGACCTCAGGCAATCTGCCCGCCTCAGCCTCCCA
5201 AAGTGCTGGAATTACAGGTGTGAGCCACCGTGCCCGGCCAAGTATCTCTTTTCTACAGCCTTATTAAACTAACTACAAAC
5281 ATTTATTTTCCAATTTAGTTTTACTTTCAGTGCATATCAAAGTTGTTGTACTCTTCAGACCAACAAATTAACTTGAGGGC
5361 AAATTACATAGCTTTCCATGTACCCTTTTTTCCTCAGGTGCTAATCAAAGGCTCTGAAAATGGATACTGCTTTAGTGATG
5441 TCTGCTTTATTCTTAAAATGCTTATTTCTTTTGCTAGATGTAAAGATTTGGTGTTAACAAAAGTGGTTTTAATATGTAAA
5521 TATGAATGAATGCCTTTAGTTTACCCTGTTTGTCTATTATTAATCTGTTTTCATTTATCCTTCATAGAGGAGGATCCTTT
5601 CATGATCTTGAATACATTTCATTAGATATTGTTGCATTTTAAGAATGAAAATACAACTGTTTTCTGTCTTAGATTAATCC
5681 TGCTGCTATGAGAAACTGAAAATCAAGAATGTGATGCACTTTTTACATTACTATATACCATACATATACCATAGGTTGCT
5761 TTGATACCTTTCCTGTAGCACAGCCACTAACAAGAGTGAATGAATTATAAAATTCTTTTTGGGAGGGAATCAATACAAGT
5841 AACTAATTCTTAGCTGATATTGTCCTATGAAGGACAATAACTTAGGAATATAAGAATTCTGTTAATAGTACACTTTTTGG
5921 CCTTAAATGTCTTCTACTACTGAAAATAGTTTAAATCTTAGCTTTGTTTCTATTATTCCCTCTCTCTGCCTCAGAAAGAG
6001 GAATTGGGAAGAATGGCTTAAAGGACGTGGTGTCATTGATTTGTTGCTGATCTTTTAGAAAACATTTGTCTATGTAAGCT
6081 GGGGACTTATTTTTTGTTTGTATATAGAGGGGAAATAGTGCTGCCCTGAACCAATCAGATTTAGTTTAAATCAAATCAAT
6161 CAAAACTCCAGCTGTTTCTCTTGTCTTTTTACTTAGCAAAGGAAAACTTTAGTGAATGCTACTTGACAAGAAGAAAAGTC
6241 ATTTCTCAAGCACATACCCAAACTTGAAGGTGATTGAACCCAAAATAATGGGTGGGAAACACCAAATGAGGTGGAGGAAT
6321 GAGAAAGATGTGTGGGCCAAAGCTATCTGGTTATATTTTGATGTTGCCAATATCGCAAAGCCAAAATTTTAATTTGCTTA
6401 TTTAATATATTTGTTGGCCAGAGATCTATTTTTATATCAATGTGCCTTGCATGTATATTAAAAAAAAAAAATTGGAAACG
6481 CCATGTAGTAATGCCTGAGATAGTCGATGGTTCTTACCACCTCACTAATTTTTATGCAGTATGAAATGCTCATTCTATTG
6561 CCCAACTGGTGCTCTCTGTTTAAAGTTACAGATCTTGCGAAACTGGAACTATTTTATAAGCTGGGGAAGTGATTTACTTT
6641 TTTTGTTGTATCTTTTTTGTTCTTAGTCTGTTAGTGGCTGTCCTGTAGTGGGAAATAGTAAAAGGATTCTTCACTCCCTT
6721 CTCCCCTCAGCACCTTCTTCAAGTAAACATTTCTTGTGTGCTTTGAAAAAAGTTTCAGCTTGCTGTCTCTTTTAGTGTTT
6801 TAAAGAAGTGTTATACAAAGCATTGTTTGCAAAATATAGGGAGATAATGGAGTCCACTTTAATTTGGAATTCTGTGTGAG
6881 CTATGATCCAAGTTATCAGCTCTTTCCAACTTTAAAAATTTTGTTAAAAGCACCTTGCTTAGAAAATTTTAAATATTTAT
6961 GTCTGCAACAATTGTCTCAAAATAATAAACTGTGCAATTCTTGTCATTAAAAAAAAAAAAGATCTGAATTTTCCCTAATG
7041 TGACTTGTTAGTTTCTCTCTGTATTTCCTGCCAGTGTAAATGTGAAAGCTTTGCTTGCATTACGTTTTAGAAATGCATTT
7121 TGCACACTCGAATTTTGCCGAAGCTCCGTGAAAAGGTTAGATCTAAGTAGATGAATAAAGCTATGCACATGTTTTGAAAG
7201 TTTAATTTGTGTGTCATTACCAAAAGTGACCGATTTGTCCTTACTACTTTGCTGTTGTTAGCTTTACCATCTTTGGAAAC
7281 TTGGCTCAAAGTTACATAGTTCTGGGCTAGCTCATCAGTGGAACTAGGAGAGAGGAAAACTGGCACCTATTTTAATAAAG
7361 TTCAATTTAAACGAGAGCTTGACTTGTATCTATTAAAGAGCTTTTCTTGAAACAGGGCAGTTTTATCAGCTTTACAAATC
7441 ATTGGATGCTCTTCCTTAGTAATATTTTGGTTTATTTGATCAAATAGAAATGGAAAGTAATTCAAACTGAAAGACCCTTT
7521 TTTGTCATATGGAACTTGGTGACGATTTTTTGTCTTAAAGCTGGTTTAAAGGTAGGATAGGCTTTTACCTTTATTGCTTT
7601 AGCATAAATTTGGTTTACTGAATTGACTGGCTTGAGATTAGAATTATTCAGTTGTTTGTAAGATCAAAGCACTGGTTGTT
7681 TTAAAGATAACGTGTATCTTTTAAAAAATTGCCCAAGCTGATTAGAACAAGTTTAGGAGTTGGGTACATTTGGTTCAAGT
7761 GCTGCAATCTGTATGTACTAAATAGCTTTACTTTGTGTATGTGTACTTATAATGTGTAGATGTACTACTACCCAGGTTTT
7841 GTCAAATCATCTTTTTTAAAGTTTTTTTTTTTTTAATTGGTTCAGGACCTTTGTAGGAGAGGCTAATATGTTTAAGTAGA
7921 AGATATTACTGATAGCATTTTCCCCATGCTCCTACATAAAAAATAAATATTTCCATTTTATAGCTTTTTCAATATACAGA
8001 AGAGGGTTACTTCTTCATCAAGTATATTGTTGCCTTTGAGGACACAGCAAAACCCTTCTATATGTATCTTCATTGATAGT
8081 GGCAGTTAAAAACTAAGTTATCCAGTTAAGACTTAAAAGGTGACCCATATTAATTGCATGGCCTTAAAAGGCAGAAATGC
8161 AGGAGTGTAGCAAGCATCATTTTAGATGGCTATGGTTCCTCTTCCGCATCTGTCAGTAGTTCACTTATGTTCAGTCTTAG
8241 AACCTACTGGAGGAGTGAAGTAATTTCTCTGTCTCGTGCAGAGGCACTAAGGAGCTGAGTTACCTCTTAATCTGGGGGAA
8321 TGGATAATAAGTGGAGTACAGTTATGTTAAAGGATGTTCCCCCCGCTCAAAAAAAAGTTTCAATGTTTGTTTTGCCCAGT
8401 CAAAAATATAGGTCTTTTCTACATATAAGAACAGTCACCAGAAATTTTCCCTTTTGCTAAATGCTTAGGTATTTGCTATA
8481 GCTGTTTCTGATGTCATGGATTCTGAGGAAGTGTCATTTACGTGATGATCTTCCTTTATTGATGTCTTCATCATGTTCAG
8561 TGTTTTAAAAATATAAATTACAAACACTCTACAACCATACCCAGATTTACTTATTTTATCAGAAAAAAAACTTGAGAAAT
8641 TTGTAGATCAAATTGAGAGACAATAAGTGTACATTGTTGAATAAAAAATTTTAAAGTTTCTGAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uaUGCAUGUAUAUAUAUAUAUAaa 5'
            |: |||||||||||||||||  
Target 5' atATATACATATATATATATATag 3'
 141 - 164 178.00 -16.00
2 
miRNA  3' uaugcAUGUAUAUAUAUAUAUAaa 5'
               ||:||||||||||||||  
Target 5' cataaTATATATATATATATATaa 3'
 1787 - 1810 171.00 -13.40
3 
miRNA  3' uaUGCAUGU-----AUAUA---UAUAUAUAAa 5'
            || ||||     |: ||   :|||||||| 
Target 5' tgACATACAGAGGTTGAATTGAGTATATATTt 3'
 2377 - 2408 158.00 -8.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26585560 32 COSMIC
COSN29989651 45 COSMIC
COSN31518337 48 COSMIC
COSN30127179 53 COSMIC
COSN30481959 58 COSMIC
COSN26987224 68 COSMIC
COSN8834169 99 COSMIC
COSN31956352 112 COSMIC
COSN26435219 115 COSMIC
COSN30126516 134 COSMIC
COSN31485289 134 COSMIC
COSN28882970 135 COSMIC
COSN30118087 146 COSMIC
COSN30509983 148 COSMIC
COSN30165385 150 COSMIC
COSN13709662 171 COSMIC
COSN20272340 180 COSMIC
COSN28753002 221 COSMIC
COSN26670103 250 COSMIC
COSN31590679 251 COSMIC
COSN1195083 256 COSMIC
COSN26465474 287 COSMIC
COSN31535753 309 COSMIC
COSN26603854 375 COSMIC
COSN26679074 380 COSMIC
COSN30542520 495 COSMIC
COSN30541609 610 COSMIC
COSN31573019 627 COSMIC
COSN23688827 669 COSMIC
COSN7163226 702 COSMIC
COSN31530248 739 COSMIC
COSN30240140 837 COSMIC
COSN8241404 916 COSMIC
COSN31488768 996 COSMIC
COSN15187998 1018 COSMIC
COSN31584334 1201 COSMIC
COSN7163225 1305 COSMIC
COSN21412049 1495 COSMIC
COSN17351216 1789 COSMIC
COSN6548041 1810 COSMIC
COSN31479531 1863 COSMIC
COSN30169874 1916 COSMIC
COSN30164814 2020 COSMIC
COSN20113752 2130 COSMIC
COSN31556194 2159 COSMIC
COSN8602843 2172 COSMIC
COSN31537967 2266 COSMIC
COSN28712779 2348 COSMIC
COSN20113749 2572 COSMIC
COSN26564360 2767 COSMIC
COSN22450957 2816 COSMIC
COSN31520055 2838 COSMIC
COSN22279257 2871 COSMIC
COSN31521631 2891 COSMIC
COSN31583336 2966 COSMIC
COSN20113747 3105 COSMIC
COSN20113748 3106 COSMIC
COSN25860346 3702 COSMIC
COSN1716077 4222 COSMIC
COSN6548040 4511 COSMIC
COSN29341335 4674 COSMIC
COSN19508514 4838 COSMIC
COSN7163223 4944 COSMIC
COSN7163222 4947 COSMIC
COSN27415058 4949 COSMIC
COSN17903974 5229 COSMIC
COSN15622613 5328 COSMIC
COSN29304395 5983 COSMIC
COSN20113745 6460 COSMIC
COSN29306599 6485 COSMIC
COSN25013307 6900 COSMIC
COSN6101311 7005 COSMIC
COSN28015538 7391 COSMIC
COSN22785586 7517 COSMIC
COSN21222608 7696 COSMIC
COSN27368356 7861 COSMIC
COSN27237984 7862 COSMIC
COSN17182012 8126 COSMIC
COSN22366114 8185 COSMIC
COSN4768744 8203 COSMIC
COSN4768743 8246 COSMIC
COSN4768742 8373 COSMIC
rs3785961 232 GWAS
rs143960646 2576 GWAS
rs8614 2751 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs773725068 3 dbSNP
rs768019365 5 dbSNP
rs1285728685 8 dbSNP
rs762259195 14 dbSNP
rs1350664023 16 dbSNP
rs774460218 19 dbSNP
rs201190853 20 dbSNP
rs189825211 25 dbSNP
rs770011613 29 dbSNP
rs374136415 31 dbSNP
rs780876515 41 dbSNP
rs757184414 44 dbSNP
rs1164166324 46 dbSNP
rs371560511 47 dbSNP
rs1411162728 52 dbSNP
rs757731261 54 dbSNP
rs1470472666 58 dbSNP
rs1160657301 59 dbSNP
rs1426614446 63 dbSNP
rs1468932310 65 dbSNP
rs1403971169 76 dbSNP
rs757961967 81 dbSNP
rs370091001 82 dbSNP
rs377244438 86 dbSNP
rs1307005397 89 dbSNP
rs1427471054 90 dbSNP
rs565691805 91 dbSNP
rs1167419372 122 dbSNP
rs778653778 124 dbSNP
rs1406396874 132 dbSNP
rs1022766511 134 dbSNP
rs879152719 135 dbSNP
rs566461350 146 dbSNP
rs1223036487 148 dbSNP
rs1263974824 148 dbSNP
rs1321460861 148 dbSNP
rs200721235 148 dbSNP
rs1484397435 150 dbSNP
rs1193790183 153 dbSNP
rs1016428621 155 dbSNP
rs1185847013 157 dbSNP
rs112392860 160 dbSNP
rs1438271050 160 dbSNP
rs1184295499 162 dbSNP
rs150387941 163 dbSNP
rs1266739847 164 dbSNP
rs373146104 164 dbSNP
rs752767473 164 dbSNP
rs529020414 171 dbSNP
rs1396257213 175 dbSNP
rs894451074 178 dbSNP
rs568177581 179 dbSNP
rs1344234763 185 dbSNP
rs999568376 194 dbSNP
rs1057233338 201 dbSNP
rs1003394824 206 dbSNP
rs1479814854 208 dbSNP
rs903256730 228 dbSNP
rs3785961 232 dbSNP
rs1225545825 234 dbSNP
rs945189909 240 dbSNP
rs1339797457 249 dbSNP
rs1321008806 250 dbSNP
rs1207097984 256 dbSNP
rs1266672545 259 dbSNP
rs1490186434 272 dbSNP
rs1199427033 274 dbSNP
rs1271225335 275 dbSNP
rs1011015804 284 dbSNP
rs1192065984 286 dbSNP
rs140777493 294 dbSNP
rs1329204274 301 dbSNP
rs1287242630 304 dbSNP
rs1364178256 307 dbSNP
rs1053669913 325 dbSNP
rs943030050 326 dbSNP
rs1424595994 329 dbSNP
rs1294133990 335 dbSNP
rs1369856869 341 dbSNP
rs1380641628 350 dbSNP
rs1295102213 353 dbSNP
rs1039211250 362 dbSNP
rs1407599443 363 dbSNP
rs1230338003 366 dbSNP
rs944833218 368 dbSNP
rs1349523312 378 dbSNP
rs910241566 379 dbSNP
rs987140806 383 dbSNP
rs1358571610 389 dbSNP
rs564519780 395 dbSNP
rs546479489 396 dbSNP
rs1266657162 399 dbSNP
rs1437667912 412 dbSNP
rs1204097368 413 dbSNP
rs933099150 416 dbSNP
rs527938481 424 dbSNP
rs1349760801 426 dbSNP
rs1163372860 430 dbSNP
rs919011101 437 dbSNP
rs1459319687 441 dbSNP
rs866037907 442 dbSNP
rs1412780719 444 dbSNP
rs972641822 448 dbSNP
rs1166062350 449 dbSNP
rs753067091 450 dbSNP
rs767938622 456 dbSNP
rs1427565061 460 dbSNP
rs1191508671 463 dbSNP
rs1288438511 468 dbSNP
rs1488025042 469 dbSNP
rs368660624 477 dbSNP
rs758264325 478 dbSNP
rs1210512521 479 dbSNP
rs183807581 480 dbSNP
rs1314753572 484 dbSNP
rs1465332507 487 dbSNP
rs541789991 492 dbSNP
rs1266872852 493 dbSNP
rs755324120 497 dbSNP
rs1268227391 498 dbSNP
rs1465933849 499 dbSNP
rs928996830 510 dbSNP
rs1242187304 521 dbSNP
rs1461127821 526 dbSNP
rs920279449 527 dbSNP
rs752110344 528 dbSNP
rs1158410380 534 dbSNP
rs1301568533 535 dbSNP
rs1458981607 551 dbSNP
rs1334936487 557 dbSNP
rs1405693226 562 dbSNP
rs948479067 566 dbSNP
rs1304375012 574 dbSNP
rs915619736 577 dbSNP
rs958930752 579 dbSNP
rs1223166635 581 dbSNP
rs1288380325 583 dbSNP
rs1330564751 584 dbSNP
rs1221202354 590 dbSNP
rs1036130931 591 dbSNP
rs1370674294 594 dbSNP
rs1324375836 596 dbSNP
rs1002869802 609 dbSNP
rs1437832315 610 dbSNP
rs992713001 611 dbSNP
rs960134470 617 dbSNP
rs750314684 626 dbSNP
rs1319926072 627 dbSNP
rs747646550 628 dbSNP
rs1451751089 629 dbSNP
rs1473601799 632 dbSNP
rs1174450647 638 dbSNP
rs903308487 641 dbSNP
rs1428774283 649 dbSNP
rs1379500107 651 dbSNP
rs1177906386 653 dbSNP
rs1177025079 660 dbSNP
rs1352572053 665 dbSNP
rs1432893332 666 dbSNP
rs1393026523 667 dbSNP
rs977725796 668 dbSNP
rs765286080 669 dbSNP
rs1402553647 670 dbSNP
rs1282097972 673 dbSNP
rs1022320390 677 dbSNP
rs150975868 686 dbSNP
rs1202802997 689 dbSNP
rs1483933185 693 dbSNP
rs76369956 694 dbSNP
rs1315253591 695 dbSNP
rs1306096742 706 dbSNP
rs1018104843 708 dbSNP
rs752869729 715 dbSNP
rs778336202 719 dbSNP
rs1484324105 722 dbSNP
rs191714504 723 dbSNP
rs890601025 725 dbSNP
rs943295204 726 dbSNP
rs1193100541 730 dbSNP
rs1417694157 737 dbSNP
rs1409139099 740 dbSNP
rs1169059481 742 dbSNP
rs1047866847 744 dbSNP
rs889030115 757 dbSNP
rs899389825 758 dbSNP
rs1331212380 761 dbSNP
rs1037330366 763 dbSNP
rs1231116841 774 dbSNP
rs1438039153 774 dbSNP
rs1051905954 776 dbSNP
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rs765500329 867 dbSNP
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rs909408128 892 dbSNP
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rs1321593664 905 dbSNP
rs1367750784 919 dbSNP
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rs539762285 950 dbSNP
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rs1186649333 984 dbSNP
rs1368983630 992 dbSNP
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rs1484462904 1005 dbSNP
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rs1026905994 1012 dbSNP
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rs1322107269 1019 dbSNP
rs1403516751 1034 dbSNP
rs565952000 1047 dbSNP
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rs1205491049 1053 dbSNP
rs1037907533 1059 dbSNP
rs768617332 1060 dbSNP
rs1277815930 1064 dbSNP
rs1251173493 1067 dbSNP
rs1229141602 1068 dbSNP
rs1270236857 1069 dbSNP
rs1225865363 1070 dbSNP
rs1199599680 1073 dbSNP
rs1256620709 1080 dbSNP
rs1444026314 1081 dbSNP
rs865941589 1093 dbSNP
rs1012563582 1099 dbSNP
rs1313441090 1100 dbSNP
rs893211120 1101 dbSNP
rs1160826357 1102 dbSNP
rs370862234 1105 dbSNP
rs1310060139 1106 dbSNP
rs938445251 1110 dbSNP
rs1172312330 1111 dbSNP
rs1007394538 1113 dbSNP
rs1395500302 1118 dbSNP
rs1165998543 1120 dbSNP
rs889032116 1122 dbSNP
rs1051652924 1139 dbSNP
rs1306694387 1161 dbSNP
rs1459319558 1163 dbSNP
rs1410513578 1182 dbSNP
rs1369020433 1186 dbSNP
rs535478804 1200 dbSNP
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rs186536865 1210 dbSNP
rs1035966574 1216 dbSNP
rs550719649 1217 dbSNP
rs947201549 1218 dbSNP
rs183694203 1226 dbSNP
rs1193912720 1232 dbSNP
rs908959151 1237 dbSNP
rs1250190494 1244 dbSNP
rs537495942 1250 dbSNP
rs1055928215 1254 dbSNP
rs571034167 1259 dbSNP
rs552315019 1262 dbSNP
rs1183636504 1265 dbSNP
rs771860217 1269 dbSNP
rs928891510 1270 dbSNP
rs1266566218 1271 dbSNP
rs1379062499 1273 dbSNP
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rs981690803 1289 dbSNP
rs1370418070 1293 dbSNP
rs1430970826 1294 dbSNP
rs1290363737 1300 dbSNP
rs1309886544 1326 dbSNP
rs60639022 1329 dbSNP
rs913257619 1330 dbSNP
rs1335411108 1331 dbSNP
rs560439244 1331 dbSNP
rs990140700 1333 dbSNP
rs548455772 1336 dbSNP
rs1388322425 1339 dbSNP
rs200202665 1342 dbSNP
rs745400711 1342 dbSNP
rs957479642 1344 dbSNP
rs1224882232 1352 dbSNP
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rs1296615179 1360 dbSNP
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rs78271230 1387 dbSNP
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rs193232088 1470 dbSNP
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rs1230401113 1499 dbSNP
rs1026394375 1506 dbSNP
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rs1270029932 1529 dbSNP
rs937521379 1531 dbSNP
rs1207675426 1540 dbSNP
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rs77577638 1567 dbSNP
rs1190975949 1569 dbSNP
rs946351401 1572 dbSNP
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rs546048554 1575 dbSNP
rs990150465 1580 dbSNP
rs957322493 1593 dbSNP
rs1455748663 1598 dbSNP
rs911322143 1602 dbSNP
rs1437007196 1608 dbSNP
rs749000244 1615 dbSNP
rs1378279653 1622 dbSNP
rs777382980 1625 dbSNP
rs1396561818 1630 dbSNP
rs1314816207 1633 dbSNP
rs1326430737 1642 dbSNP
rs1227303787 1652 dbSNP
rs1057211204 1653 dbSNP
rs1330777269 1656 dbSNP
rs1218314243 1662 dbSNP
rs1483185719 1665 dbSNP
rs1182920645 1668 dbSNP
rs1258939593 1674 dbSNP
rs1438556169 1674 dbSNP
rs1181635944 1677 dbSNP
rs1390756977 1680 dbSNP
rs1320588688 1683 dbSNP
rs1358396970 1688 dbSNP
rs1466400958 1690 dbSNP
rs1030191462 1693 dbSNP
rs149709101 1693 dbSNP
rs1002504304 1694 dbSNP
rs902971480 1698 dbSNP
rs188914890 1702 dbSNP
rs1351897702 1704 dbSNP
rs1217146338 1709 dbSNP
rs947232757 1716 dbSNP
rs1311953940 1719 dbSNP
rs1211335786 1720 dbSNP
rs1283083677 1721 dbSNP
rs1482365414 1736 dbSNP
rs774751222 1737 dbSNP
rs1181481873 1749 dbSNP
rs962026725 1749 dbSNP
rs1173933938 1756 dbSNP
rs1014755647 1763 dbSNP
rs1005849858 1764 dbSNP
rs887417970 1767 dbSNP
rs1189669429 1774 dbSNP
rs1424793263 1776 dbSNP
rs1433548031 1782 dbSNP
rs554150380 1783 dbSNP
rs1177967078 1784 dbSNP
rs1368568483 1784 dbSNP
rs914425546 1784 dbSNP
rs1371833975 1786 dbSNP
rs1039528609 1787 dbSNP
rs535743301 1788 dbSNP
rs183633038 1790 dbSNP
rs1306107128 1792 dbSNP
rs987913755 1792 dbSNP
rs1360163836 1803 dbSNP
rs1205117985 1805 dbSNP
rs906935179 1806 dbSNP
rs1193419490 1807 dbSNP
rs1045936992 1808 dbSNP
rs869200731 1809 dbSNP
rs10595554 1810 dbSNP
rs1219548905 1810 dbSNP
rs555845291 1810 dbSNP
rs71660032 1810 dbSNP
rs71728958 1810 dbSNP
rs755375631 1810 dbSNP
rs933326862 1810 dbSNP
rs1169120374 1813 dbSNP
rs35981445 1813 dbSNP
rs946166229 1813 dbSNP
rs1392013683 1818 dbSNP
rs1403093136 1820 dbSNP
rs972103410 1820 dbSNP
rs892058261 1821 dbSNP
rs1054681581 1822 dbSNP
rs1016402155 1824 dbSNP
rs1446471855 1824 dbSNP
rs1282330574 1829 dbSNP
rs991640541 1830 dbSNP
rs959218988 1834 dbSNP
rs936005209 1844 dbSNP
rs1342085728 1847 dbSNP
rs911249815 1852 dbSNP
rs1002986815 1859 dbSNP
rs1231852890 1863 dbSNP
rs1289271571 1879 dbSNP
rs1452363393 1885 dbSNP
rs902836489 1887 dbSNP
rs1020071294 1890 dbSNP
rs985851221 1890 dbSNP
rs1367205083 1892 dbSNP
rs1298209908 1905 dbSNP
rs1243709297 1906 dbSNP
rs1471777619 1906 dbSNP
rs1162078121 1925 dbSNP
rs1011343292 1927 dbSNP
rs1429981215 1929 dbSNP
rs1406644171 1930 dbSNP
rs934123705 1930 dbSNP
rs1156480468 1939 dbSNP
rs922677301 1942 dbSNP
rs1434738597 1954 dbSNP
rs1335685817 1956 dbSNP
rs1414624834 1957 dbSNP
rs975944076 1958 dbSNP
rs537962144 1959 dbSNP
rs1039559829 1963 dbSNP
rs961819992 1969 dbSNP
rs1284166872 1981 dbSNP
rs1357113985 1984 dbSNP
rs891069041 1990 dbSNP
rs570421071 2001 dbSNP
rs1392463179 2009 dbSNP
rs1187612740 2011 dbSNP
rs1475409309 2013 dbSNP
rs1286117769 2030 dbSNP
rs1240374619 2036 dbSNP
rs1440592606 2038 dbSNP
rs933339481 2043 dbSNP
rs1238032800 2058 dbSNP
rs1475898282 2068 dbSNP
rs1179393129 2087 dbSNP
rs984651555 2098 dbSNP
rs1410689525 2103 dbSNP
rs1189716372 2105 dbSNP
rs919276610 2114 dbSNP
rs1486101064 2128 dbSNP
rs951947659 2137 dbSNP
rs1034049609 2138 dbSNP
rs1413166128 2138 dbSNP
rs34898821 2138 dbSNP
rs191779859 2153 dbSNP
rs1343996084 2157 dbSNP
rs1275169384 2158 dbSNP
rs1213906015 2159 dbSNP
rs1350052919 2160 dbSNP
rs1229281274 2164 dbSNP
rs1337381596 2165 dbSNP
rs187530036 2166 dbSNP
rs1448160506 2167 dbSNP
rs1199725203 2169 dbSNP
rs1279153716 2169 dbSNP
rs528420902 2169 dbSNP
rs909264242 2169 dbSNP
rs1202342031 2171 dbSNP
rs1250461809 2171 dbSNP
rs1354326168 2171 dbSNP
rs1310667699 2175 dbSNP
rs770350433 2177 dbSNP
rs1477241213 2178 dbSNP
rs148886657 2179 dbSNP
rs1376533677 2185 dbSNP
rs1437148935 2190 dbSNP
rs751882640 2199 dbSNP
rs1372786046 2201 dbSNP
rs1171580825 2232 dbSNP
rs891946258 2233 dbSNP
rs1309409230 2235 dbSNP
rs1409831806 2242 dbSNP
rs766923122 2243 dbSNP
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rs758764489 2246 dbSNP
rs1349910693 2248 dbSNP
rs1226042702 2250 dbSNP
rs936266347 2251 dbSNP
rs890032747 2266 dbSNP
rs1475560978 2269 dbSNP
rs1197104015 2270 dbSNP
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rs1011207120 2283 dbSNP
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rs1049791926 2290 dbSNP
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rs1462561982 2297 dbSNP
rs182536783 2302 dbSNP
rs560527900 2303 dbSNP
rs1388779776 2317 dbSNP
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rs1372879006 2331 dbSNP
rs940549065 2333 dbSNP
rs1305653322 2339 dbSNP
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rs1342790542 2344 dbSNP
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rs1333519156 2352 dbSNP
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rs1429648350 2371 dbSNP
rs1034639324 2376 dbSNP
rs765289573 2382 dbSNP
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rs1457511548 2395 dbSNP
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rs891538255 2503 dbSNP
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rs8614 2751 dbSNP
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rs1349666512 2995 dbSNP
rs745682202 3000 dbSNP
rs1286181119 3002 dbSNP
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rs1281096088 3104 dbSNP
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rs71986075 3126 dbSNP
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rs1439976121 3127 dbSNP
rs1303975380 3128 dbSNP
rs778657016 3129 dbSNP
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rs750074327 3131 dbSNP
rs750295345 3131 dbSNP
rs757241568 3131 dbSNP
rs1055799776 3132 dbSNP
rs1225480933 3132 dbSNP
rs140005524 3132 dbSNP
rs761397813 3132 dbSNP
rs1294892414 3135 dbSNP
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rs1380624336 3141 dbSNP
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rs1372531669 3162 dbSNP
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rs1373383083 3176 dbSNP
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rs1326391772 3188 dbSNP
rs1373057455 3189 dbSNP
rs551243604 3199 dbSNP
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rs545287766 3268 dbSNP
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rs1044222989 3289 dbSNP
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rs891987169 3314 dbSNP
rs950042493 3318 dbSNP
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rs1257652442 3321 dbSNP
rs879177749 3325 dbSNP
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rs985182659 3330 dbSNP
rs1396346569 3332 dbSNP
rs988477399 3336 dbSNP
rs1255766827 3337 dbSNP
rs1385664063 3339 dbSNP
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rs867313299 3362 dbSNP
rs532443304 3369 dbSNP
rs1290955416 3387 dbSNP
rs1354394129 3390 dbSNP
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rs922408203 3395 dbSNP
rs1251220090 3397 dbSNP
rs925707246 3398 dbSNP
rs1237427739 3420 dbSNP
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rs978483622 3428 dbSNP
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rs1255442519 3452 dbSNP
rs571667723 3457 dbSNP
rs1028939946 3460 dbSNP
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rs140502530 3461 dbSNP
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rs1001570155 3467 dbSNP
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rs907178990 3472 dbSNP
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rs1015761584 3481 dbSNP
rs1024287810 3481 dbSNP
rs1004181027 3484 dbSNP
rs767670690 3488 dbSNP
rs1054631877 3490 dbSNP
rs1317932521 3493 dbSNP
rs146790287 3498 dbSNP
rs1002727757 3502 dbSNP
rs1347157992 3509 dbSNP
rs1211772131 3520 dbSNP
rs1163586633 3522 dbSNP
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rs1182137760 3551 dbSNP
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rs139798759 3558 dbSNP
rs922281866 3562 dbSNP
rs1434789208 3571 dbSNP
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rs1175032260 3575 dbSNP
rs1352373532 3576 dbSNP
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rs1374438975 3578 dbSNP
rs1052996912 3579 dbSNP
rs1301874999 3591 dbSNP
rs1370983218 3594 dbSNP
rs1235084760 3595 dbSNP
rs1280875338 3596 dbSNP
rs1305867687 3605 dbSNP
rs1194576210 3606 dbSNP
rs529877124 3612 dbSNP
rs925633295 3615 dbSNP
rs1273820337 3616 dbSNP
rs1213181044 3620 dbSNP
rs1332893767 3622 dbSNP
rs150649975 3639 dbSNP
rs959453044 3646 dbSNP
rs1252277313 3651 dbSNP
rs1195458409 3661 dbSNP
rs535846111 3661 dbSNP
rs1416711919 3664 dbSNP
rs932429523 3665 dbSNP
rs1408877977 3675 dbSNP
rs1170626321 3677 dbSNP
rs1355985521 3685 dbSNP
rs1467498214 3687 dbSNP
rs1324356387 3688 dbSNP
rs371075015 3695 dbSNP
rs1442229203 3702 dbSNP
rs1334943990 3705 dbSNP
rs1359881223 3706 dbSNP
rs1214063506 3710 dbSNP
rs1296552414 3713 dbSNP
rs970642368 3714 dbSNP
rs1211559806 3717 dbSNP
rs977329884 3720 dbSNP
rs965543520 3721 dbSNP
rs1015815754 3734 dbSNP
rs1240291173 3742 dbSNP
rs16964955 3761 dbSNP
rs891925334 3762 dbSNP
rs1033087202 3770 dbSNP
rs952950038 3801 dbSNP
rs1000398472 3810 dbSNP
rs889935805 3813 dbSNP
rs1442927267 3820 dbSNP
rs139596040 3827 dbSNP
rs374028305 3827 dbSNP
rs1462304322 3836 dbSNP
rs1326031616 3839 dbSNP
rs1344013032 3840 dbSNP
rs142911763 3842 dbSNP
rs1459391453 3844 dbSNP
rs1342490756 3845 dbSNP
rs1386545644 3849 dbSNP
rs1158778987 3854 dbSNP
rs901401498 3856 dbSNP
rs1036693679 3858 dbSNP
rs763173335 3860 dbSNP
rs1363529146 3869 dbSNP
rs1229888107 3872 dbSNP
rs1282050766 3878 dbSNP
rs939679665 3879 dbSNP
rs909661953 3880 dbSNP
rs1264655666 3881 dbSNP
rs1484416522 3889 dbSNP
rs905276994 3890 dbSNP
rs1455936025 3893 dbSNP
rs558091162 3895 dbSNP
rs1254205359 3896 dbSNP
rs1025024033 3899 dbSNP
rs1362479382 3901 dbSNP
rs62065195 3903 dbSNP
rs920359798 3903 dbSNP
rs895629790 3920 dbSNP
rs926461898 3923 dbSNP
rs1277595978 3925 dbSNP
rs1349729157 3931 dbSNP
rs1224221603 3934 dbSNP
rs1052921900 3949 dbSNP
rs1286514538 3954 dbSNP
rs934594367 3960 dbSNP
rs557052221 3965 dbSNP
rs752962193 3985 dbSNP
rs1209609960 3995 dbSNP
rs904435317 3996 dbSNP
rs12150225 4000 dbSNP
rs1179266652 4001 dbSNP
rs1231489550 4003 dbSNP
rs932297592 4004 dbSNP
rs1159714791 4015 dbSNP
rs913819224 4016 dbSNP
rs921023753 4033 dbSNP
rs1173148256 4036 dbSNP
rs1371518790 4037 dbSNP
rs1416341517 4038 dbSNP
rs1327126057 4039 dbSNP
rs976503842 4046 dbSNP
rs1442664870 4049 dbSNP
rs116593081 4050 dbSNP
rs571462792 4054 dbSNP
rs182402847 4060 dbSNP
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rs1360869331 7362 dbSNP
rs575293226 7365 dbSNP
rs1194865849 7372 dbSNP
rs979534083 7375 dbSNP
rs1297386987 7379 dbSNP
rs557692007 7383 dbSNP
rs1250861336 7392 dbSNP
rs1420019217 7397 dbSNP
rs1184737521 7406 dbSNP
rs1026509828 7416 dbSNP
rs1021491808 7417 dbSNP
rs1177793814 7426 dbSNP
rs975647496 7429 dbSNP
rs1360952043 7440 dbSNP
rs898848789 7441 dbSNP
rs754999397 7448 dbSNP
rs963995559 7456 dbSNP
rs1176755482 7459 dbSNP
rs1432084594 7464 dbSNP
rs1422513275 7479 dbSNP
rs1019914978 7488 dbSNP
rs1016314426 7492 dbSNP
rs747278778 7492 dbSNP
rs1012676249 7497 dbSNP
rs1187845880 7503 dbSNP
rs1224038074 7505 dbSNP
rs1303399410 7506 dbSNP
rs545911732 7516 dbSNP
rs1264302960 7532 dbSNP
rs1226115205 7535 dbSNP
rs1216376090 7538 dbSNP
rs886751330 7540 dbSNP
rs780217643 7542 dbSNP
rs1219816923 7543 dbSNP
rs1267131127 7552 dbSNP
rs1490307998 7552 dbSNP
rs1200755604 7560 dbSNP
rs758217736 7561 dbSNP
rs1427914567 7563 dbSNP
rs1057029010 7568 dbSNP
rs868149269 7576 dbSNP
rs775087177 7593 dbSNP
rs1169765208 7604 dbSNP
rs1373729470 7608 dbSNP
rs1211522958 7609 dbSNP
rs1301592381 7610 dbSNP
rs572177323 7612 dbSNP
rs995245591 7618 dbSNP
rs1220649372 7634 dbSNP
rs1359734727 7635 dbSNP
rs1213940639 7640 dbSNP
rs1295605607 7646 dbSNP
rs1343687068 7649 dbSNP
rs898232107 7657 dbSNP
rs1277855164 7663 dbSNP
rs1045277500 7665 dbSNP
rs1248841005 7672 dbSNP
rs1485144253 7673 dbSNP
rs1186448208 7675 dbSNP
rs990556674 7682 dbSNP
rs553826638 7686 dbSNP
rs948182620 7689 dbSNP
rs947269979 7691 dbSNP
rs534849567 7692 dbSNP
rs1425572356 7694 dbSNP
rs1056705019 7695 dbSNP
rs1404168939 7707 dbSNP
rs750167792 7711 dbSNP
rs1303345312 7712 dbSNP
rs567337617 7716 dbSNP
rs1289444675 7720 dbSNP
rs1366726887 7721 dbSNP
rs1449882411 7723 dbSNP
rs923965271 7724 dbSNP
rs1383003072 7729 dbSNP
rs1229688760 7730 dbSNP
rs910626923 7732 dbSNP
rs555679351 7744 dbSNP
rs1315570653 7750 dbSNP
rs1215683158 7758 dbSNP
rs987626640 7763 dbSNP
rs1466287959 7764 dbSNP
rs979416591 7767 dbSNP
rs1242637934 7770 dbSNP
rs954856357 7775 dbSNP
rs1317857902 7778 dbSNP
rs1171945717 7780 dbSNP
rs919395586 7786 dbSNP
rs946858892 7794 dbSNP
rs921971099 7799 dbSNP
rs183699530 7800 dbSNP
rs975279136 7807 dbSNP
rs1191114827 7808 dbSNP
rs964190432 7810 dbSNP
rs1019508453 7811 dbSNP
rs1335419311 7816 dbSNP
rs1258774388 7820 dbSNP
rs986703308 7820 dbSNP
rs190974629 7822 dbSNP
rs1182895204 7824 dbSNP
rs1371597886 7827 dbSNP
rs1223623741 7828 dbSNP
rs951287478 7832 dbSNP
rs1015934198 7845 dbSNP
rs1012994878 7847 dbSNP
rs1331780175 7847 dbSNP
rs1262517927 7861 dbSNP
rs1443146085 7864 dbSNP
rs75120939 7874 dbSNP
rs757762030 7875 dbSNP
rs958478763 7875 dbSNP
rs1254274711 7878 dbSNP
rs1413919300 7880 dbSNP
rs1479376702 7886 dbSNP
rs536901486 7888 dbSNP
rs1402275431 7901 dbSNP
rs1415726588 7919 dbSNP
rs1326404953 7923 dbSNP
rs1025299669 7924 dbSNP
rs1353523750 7926 dbSNP
rs995132518 7929 dbSNP
rs898248814 7930 dbSNP
rs1308957557 7933 dbSNP
rs1257653678 7935 dbSNP
rs1002731603 7946 dbSNP
rs1023772182 7946 dbSNP
rs1283272996 7947 dbSNP
rs1220976654 7951 dbSNP
rs1012431439 7963 dbSNP
rs896625411 7966 dbSNP
rs1206141230 7967 dbSNP
rs1313164994 7975 dbSNP
rs1253695566 7978 dbSNP
rs1489814586 7983 dbSNP
rs771582446 7992 dbSNP
rs1395341685 7993 dbSNP
rs1011502094 7994 dbSNP
rs935601049 7995 dbSNP
rs373847299 7997 dbSNP
rs1446845092 8002 dbSNP
rs1309542727 8004 dbSNP
rs1043746567 8006 dbSNP
rs569676639 8010 dbSNP
rs1439235790 8011 dbSNP
rs1268421151 8017 dbSNP
rs1338896726 8021 dbSNP
rs922052420 8029 dbSNP
rs551361114 8031 dbSNP
rs1039505834 8060 dbSNP
rs114714811 8062 dbSNP
rs1356962519 8064 dbSNP
rs1370499910 8072 dbSNP
rs765168434 8073 dbSNP
rs1267823450 8077 dbSNP
rs201381879 8086 dbSNP
rs986588236 8094 dbSNP
rs951340805 8097 dbSNP
rs1051815351 8101 dbSNP
rs565815995 8103 dbSNP
rs918464786 8115 dbSNP
rs973775372 8121 dbSNP
rs1170074814 8122 dbSNP
rs1383045002 8130 dbSNP
rs919440677 8137 dbSNP
rs962664773 8138 dbSNP
rs1165952539 8141 dbSNP
rs1162976062 8143 dbSNP
rs1423643619 8144 dbSNP
rs1023404460 8151 dbSNP
rs1181126097 8157 dbSNP
rs1458259082 8187 dbSNP
rs534489392 8192 dbSNP
rs185780442 8205 dbSNP
rs565882037 8206 dbSNP
rs963702920 8209 dbSNP
rs960435388 8212 dbSNP
rs1380799290 8214 dbSNP
rs1245540718 8228 dbSNP
rs1035224327 8229 dbSNP
rs999653777 8244 dbSNP
rs902773233 8246 dbSNP
rs1319746622 8250 dbSNP
rs1043971376 8252 dbSNP
rs1447504421 8261 dbSNP
rs1035332811 8262 dbSNP
rs1464932858 8271 dbSNP
rs1010925351 8275 dbSNP
rs773921577 8276 dbSNP
rs1240738227 8284 dbSNP
rs1443559316 8286 dbSNP
rs1002638365 8290 dbSNP
rs753719177 8303 dbSNP
rs72819452 8304 dbSNP
rs749159830 8306 dbSNP
rs1157305029 8315 dbSNP
rs375829155 8316 dbSNP
rs562097724 8319 dbSNP
rs1322573081 8325 dbSNP
rs1404010540 8332 dbSNP
rs1011814800 8338 dbSNP
rs1313780560 8345 dbSNP
rs1342020451 8345 dbSNP
rs181651593 8353 dbSNP
rs1329711724 8358 dbSNP
rs893079073 8359 dbSNP
rs1050888999 8362 dbSNP
rs535789433 8364 dbSNP
rs750236672 8365 dbSNP
rs918518635 8365 dbSNP
rs1006737203 8366 dbSNP
rs974376258 8370 dbSNP
rs962641711 8371 dbSNP
rs1473167943 8373 dbSNP
rs1160914407 8377 dbSNP
rs889127290 8377 dbSNP
rs1465651443 8381 dbSNP
rs1303614527 8382 dbSNP
rs916264610 8383 dbSNP
rs1404569881 8389 dbSNP
rs1051681327 8401 dbSNP
rs1440849816 8404 dbSNP
rs933409268 8409 dbSNP
rs1350950861 8411 dbSNP
rs1379725306 8413 dbSNP
rs990496148 8414 dbSNP
rs897901652 8422 dbSNP
rs960445438 8423 dbSNP
rs1296537115 8425 dbSNP
rs1034732038 8426 dbSNP
rs1036567156 8432 dbSNP
rs1483622214 8436 dbSNP
rs942180914 8441 dbSNP
rs760083147 8450 dbSNP
rs999706152 8472 dbSNP
rs1433147127 8475 dbSNP
rs1176821022 8477 dbSNP
rs966843437 8478 dbSNP
rs1460652818 8480 dbSNP
rs531879265 8487 dbSNP
rs374036216 8500 dbSNP
rs1011603830 8508 dbSNP
rs1370915009 8512 dbSNP
rs937549841 8513 dbSNP
rs900745403 8517 dbSNP
rs928294950 8521 dbSNP
rs777782643 8522 dbSNP
rs752440075 8527 dbSNP
rs1302681306 8533 dbSNP
rs1305329443 8534 dbSNP
rs1227199761 8535 dbSNP
rs981067843 8539 dbSNP
rs1287918678 8544 dbSNP
rs1207692387 8560 dbSNP
rs1240703124 8562 dbSNP
rs1245368592 8567 dbSNP
rs564163803 8577 dbSNP
rs1039484629 8580 dbSNP
rs760638071 8587 dbSNP
rs1269539897 8588 dbSNP
rs1008860486 8595 dbSNP
rs1188132013 8597 dbSNP
rs545819856 8606 dbSNP
rs990020640 8610 dbSNP
rs3809796 8622 dbSNP
rs146779011 8623 dbSNP
rs1006768466 8631 dbSNP
rs1018032320 8631 dbSNP
rs1295284446 8631 dbSNP
rs1359232724 8632 dbSNP
rs767239550 8634 dbSNP
rs1433771673 8639 dbSNP
rs1297733509 8641 dbSNP
rs929831651 8643 dbSNP
rs1366857754 8661 dbSNP
rs891003136 8663 dbSNP
rs1234738353 8665 dbSNP
rs1288159818 8671 dbSNP
rs1331243541 8672 dbSNP
rs1222920800 8673 dbSNP
rs1300145882 8674 dbSNP
rs1267797902 8675 dbSNP
rs1463957050 8679 dbSNP
rs1030328991 8689 dbSNP
rs1384728788 8690 dbSNP
rs188510768 8692 dbSNP
rs1300464950 8693 dbSNP
rs1451486237 8697 dbSNP
rs1180408677 8698 dbSNP
rs1412787617 8699 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection PAR-CLIP data was present in GSM545217. RNA binding protein: AGO2. Condition:miR-7 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' uaugcAUGUAUAUAUAUAUAUAaa 5'
               |||||| ||||||||||  
Target 5' --uuaUACAUA-AUAUAUAUAU-- 3'
 		1 - 19
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293
Disease 57532.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "HITS-CLIP data was present in GSM714642. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 57532.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065669. RNA binding protein: AGO1. Condition:4-thiouridine "PAR-CLIP data was present in GSM1065670. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM714642
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000225388.4 | 3UTR | AUACAUAAUAUAUAUAUAUAUAUAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 /