miRTarBase - #MIRT117347


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pre-miRNA Information
pre-miRNA hsa-mir-4480   
Genomic Coordinates chr10: 12578753 - 12578823
Description Homo sapiens miR-4480 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4480
Sequence 44| AGCCAAGUGGAAGUUACUUUA |64
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 1 10 + 12578796 23291724, 27587585 MiREDiBase
A-to-I 12 10 + 12578807 23291724, 27587585 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs929437808 7 dbSNP
rs1454494557 9 dbSNP
rs1345041659 17 dbSNP
rs561601367 21 dbSNP
Putative Targets

Gene Information
Gene Symbol MAPRE2   
Synonyms CSCSC2, EB1, EB2, RP1
Description microtubule associated protein RP/EB family member 2
Transcript NM_001143826   
Other Transcripts NM_001143827 , NM_014268   
Expression
Putative miRNA Targets on MAPRE2
3'UTR of MAPRE2
(miRNA target sites are highlighted)		 
>MAPRE2|NM_001143826|3'UTR
   1 CCCACCCCGGCTGCTCTTGACACTTCCATTGTGTGTGGGAACGTTTCTTCTGGAGAATTGGAACATGTGTGGCCCCAAGC
  81 TCAACAGAAACCAGTTGTTCCCAATCTGCCGTTACCATCAACGCACTGTTGCATATGCCAGCCACTGCGCTTGGTTCCCA
 161 TTTTCTTTGCCAAGGTGTATTAGCGGACGGCCCTCTGGCCACCTACCCGAGAGATCGTAGGGTCACATACATCCAACTTC
 241 ACCACTTGGCTGCTTGAGATTGGTTCTGCTCTTTTCTTCATTTCTTTCCAGAACAACTCTTTCCCACCCCAACACCACTG
 321 CCACCACCCCTCTTTTTATCCTGGTGTGAAACAATGGTAATTTGATATATGGTATTTATATTGGCATTTTTCAACCCAGT
 401 GTCACTAGATGTCACACACATTTGTGGTGCTTTGATGTTTGCAAGTCTAACCTCTGAACATAAATTTGGTCAAATAATTG
 481 GAACAAAGGGAAACAGATACTTGATATGAAAGCCATAATGACGGTGACTTGTGTCGTGGGGGAAAACATAAGGTCATTTT
 561 CTCCCTCTACTCACAATACTAAAGGGAAAAAATGGATTCAAAGCTAGGATTTCAGGGCCCAGCAGTGTTCCTCCATCAGC
 641 ATGTTAGACAACTACACAGTATGTTGTTAGTTTTGAAAGACATTCACTCAAGGAAAACACCATCTCAACTTTGCCCGCTC
 721 ACCATGTCCCTTGCCCCCATGTAGCCCATTTCCCAGGTTATGCTCTTTTCTTTCTCAGGGTCCTCTTTGGTGGGCAGCCA
 801 CTCCCCGAGATGTTGCCATCAGTTTTCTGCAGTCCAAAGAGGGTATGGTTAGGTACGGGTCTTCCTGCCTCATTCCTCTT
 881 CCTCTTTGTGTAGGTTTCAGCCACAAAACTGTCATTCACTCTAGGGGACCCCTACTAAAGGGTAACTTCAGGTGTGCAGC
 961 CCTGAGCTCCAAGGCTCTGCACCATGCCACACACTTGCTGTAAGGCTAGAAGTGAAGACCTTATTAATAGGAGCATAATT
1041 GCGAGGGAGAATCATGGTTCTGCAGTCTGGTGTAGACACTGGAATAACAGCACAGAAAAATCTATGACTCCCAATATCTT
1121 CTAGAATAAAGAATTTTCCCTCTTTAACACAAGGGCCCTCCTTGTCATTGACCTTAGCTAAACCATGGCAATTCATAAAT
1201 AGAGGAAACATTAATGAATTAAAAGCATTCCTTATTTTTTAACTAATATTTGTACATTTTCTTAGTCTCTTTCCAAGTCT
1281 TTGCCTCTTTTTTTTCTTTATTTTTATTTTTTCCTTTGACAGATGGTATCCCTTCCTGGATCATTCATTTCACCTTGGTT
1361 TCTAACTTTAGGTTTACTTTCACTTGTTATTTGACTTAGCAGGTGCAACAAAAACAAGAAACAAATGTGCCCACCCCACT
1441 TTCCGCTTAACTGAAAAGCTTAAAATAAATTTCTGAATTATGTATCCTGAAGCTTTGAAATTTCTTTATTAATCGATGAA
1521 ATATGAATTCTAAATTCTAGCATTGAAGCTTTTCACCAAAAGAAGTCTCTCCAAAATAAATCTTTTGCAGCAAAGTGATA
1601 TTTATTGAGTTATGTGGAAAAGATGGCTTGTATTTTTCAGATTATTACAACACACTGTGCAGAATTAGACAGATGTTCCG
1681 TGGTGTTTGGTTTCCCTTTCTTCTCTCTCCTGCTCACTCTGCATTATAGCAGCAGCTTATTTCTCTAAGGCTGGACAGCC
1761 TGGCTCTCGGCAGTGACGTCCTCCCACACCTGGTCACAAGTAGTAGTGGCTGTGCTATACCCAGCATCATGCTTAACAGC
1841 GTGTTGCCCTTCTGAGCCTGTTGTACTCACTGATCTCTTTAAAAACAAAAAATAGCTCTTGTAAAAGGTCACAATAACTC
1921 TATGCACCTGATACTGCAGTGGTTCCTAGGCCATTCTTCATCTGCTCTGGACATCTCAGTCATACCCAATGCTCAGTGGA
2001 TCATGACCAAACTCCTGTCATGTGGATGCACGTGAGTGGGTAGCAGGGAGTCAGGATCCTGCCTTCTCCAGCAACCCCTT
2081 ACTGCTGTATAACTTGCATAAGCCTCCCTGGTGACTCTTGCAGGAACCACTCCATTGCCCTCCAGCTCCCCAGCCTTCTC
2161 AGTTATAAACATGCTGGCCAGATCTCTTAGCCTGCAAAGAGAACTTTCCCCAGTCACCATAGACCATTCTCCTTCCTGAA
2241 GGCTTGGGGCAGACCATTCGTTTATTTAGAGAAGAGCTATACATTCTTCTTTCTGGTCCCATCTTAAACGTCTTCTGTTG
2321 TGCTGCACCCCAGATGGTGTCTCAGATGCTTTGGGGAATCTTTAACAGCTGAATTTGAGTCAGTCCTCTTAGGCTGCACC
2401 TCCAGCCTCTGCAGATCCCCCCTCATTTCCCATGGATGGTGGGACCCCATTATTCTCTCATCTCGGCATTCAGGGAACAG
2481 TTTCCTTAGCGGCCCCTGGTCACATGTCATCGGGCTGGGCAGGAAGCGTCCCTGATTGCGTGCTCCACTTCTCCCTCTCA
2561 GGAAGCCCAGTTTCATCCTTAGTACCCCCCCTCGTGCCCGCTGTCGGCTGGTTATAGCACTTCCACTGCTACTGTCAGAT
2641 AGGAAGTGATCGAAGCAGGGGGCAAAGAGAAAGCCCATATTTGTTCTAAGCAGAAAAGCAGGAAAAAAAAAAAAAAAAAA
2721 GAAAGAAAAACACCTGTTGACCTGAGAGAAGTAAATTCCAGAAGGGAACCAAGAACTCTTCCCTTCCCTGGTGAGTATTT
2801 CCATTATTCCGTTAAGGTTTAATATGCATTCAGATTACTTTTACTAAATAGGACACCATAAAGCTTTTGTTATATATTAA
2881 ATGTAAACTGAAAGGAATGTAAACATATGTATTGTTAATTATAAATATAGATAAGTAATGACATAATAGATGAAAAAGTC
2961 TTATTCAGATGTATCACATTCATTTTACATTACCCACCTATTGTCGCATGGTAGAATAGTTTTTTGTCTCTGAATATGTG
3041 AATAACTTGACTTGCATTGATCTTTTTACATATTTAATAAAAAAAAAAGTATATGTTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' auuucaUUGAA--GGUGAACCGa 5'
                |||||  ||||||||| 
Target 5' acatccAACTTCACCACTTGGCt 3'
 229 - 251 165.00 -18.80
2 
miRNA  3' auUUC-AUUGAAGGUGAACcga 5'
            |:| | ||||:||||||   
Target 5' ttAGGTTTACTTTCACTTGtta 3'
 1368 - 1389 131.00 -14.80
3 
miRNA  3' auUUCAUUGAAGGUGAACcga 5'
            :| ||||||  |||||   
Target 5' gtGAATAACTT-GACTTGcat 3'
 3038 - 3057 122.00 -6.02
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN165638 27 COSMIC
COSN26983750 38 COSMIC
COSN25774088 44 COSMIC
COSN1082134 48 COSMIC
COSN31536840 104 COSMIC
COSN30115726 112 COSMIC
COSN19702471 143 COSMIC
COSN31606305 166 COSMIC
COSN22287880 175 COSMIC
COSN31590697 217 COSMIC
COSN8604503 220 COSMIC
COSN1738689 420 COSMIC
COSN1738690 428 COSMIC
COSN5223057 430 COSMIC
COSN31520886 478 COSMIC
COSN31543253 522 COSMIC
COSN31959727 548 COSMIC
COSN32056001 860 COSMIC
COSN28204396 1143 COSMIC
COSN30012431 1244 COSMIC
COSN29203163 1394 COSMIC
COSN25552057 1445 COSMIC
COSN16329863 1529 COSMIC
COSN32063553 1658 COSMIC
COSN27099286 2406 COSMIC
COSN6120272 2494 COSMIC
COSN6664292 2536 COSMIC
COSN6664293 2537 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1035526695 1 dbSNP
rs959901510 3 dbSNP
rs62095442 6 dbSNP
rs1448060040 7 dbSNP
rs779808323 9 dbSNP
rs748843948 10 dbSNP
rs768186732 14 dbSNP
rs774775355 16 dbSNP
rs762374638 19 dbSNP
rs1223584520 20 dbSNP
rs372302809 25 dbSNP
rs3786313 27 dbSNP
rs760979132 28 dbSNP
rs969023843 29 dbSNP
rs754028774 32 dbSNP
rs1239583737 34 dbSNP
rs562466092 36 dbSNP
rs753946061 36 dbSNP
rs1442350971 38 dbSNP
rs1380042729 39 dbSNP
rs978801933 43 dbSNP
rs200253051 44 dbSNP
rs541794276 48 dbSNP
rs757225549 49 dbSNP
rs1053560719 52 dbSNP
rs1316893500 65 dbSNP
rs891798422 68 dbSNP
rs561557507 72 dbSNP
rs1267779571 79 dbSNP
rs1163279654 96 dbSNP
rs1434053614 108 dbSNP
rs1009509560 111 dbSNP
rs1022207578 112 dbSNP
rs903703073 118 dbSNP
rs778846426 123 dbSNP
rs773970549 124 dbSNP
rs184355836 126 dbSNP
rs1403086239 127 dbSNP
rs553213495 129 dbSNP
rs1356999098 132 dbSNP
rs541171743 134 dbSNP
rs564632295 136 dbSNP
rs778687708 150 dbSNP
rs748169994 161 dbSNP
rs1407312881 174 dbSNP
rs1346626860 176 dbSNP
rs1303078396 184 dbSNP
rs533571023 185 dbSNP
rs564916572 186 dbSNP
rs930861307 189 dbSNP
rs1171440622 190 dbSNP
rs1048067836 207 dbSNP
rs886736371 209 dbSNP
rs12954409 210 dbSNP
rs1218714009 212 dbSNP
rs376651024 217 dbSNP
rs943541063 218 dbSNP
rs748267537 222 dbSNP
rs1332665290 227 dbSNP
rs529592231 229 dbSNP
rs1436807512 232 dbSNP
rs1255617845 239 dbSNP
rs116392275 245 dbSNP
rs1323614160 258 dbSNP
rs565985329 263 dbSNP
rs1012781861 265 dbSNP
rs538664284 269 dbSNP
rs1053190619 270 dbSNP
rs904450357 270 dbSNP
rs1299049143 294 dbSNP
rs189061299 300 dbSNP
rs1203105267 304 dbSNP
rs1338938872 307 dbSNP
rs1470376864 308 dbSNP
rs1259948008 309 dbSNP
rs1477577676 310 dbSNP
rs1031673154 313 dbSNP
rs956078441 321 dbSNP
rs771388804 323 dbSNP
rs1425855918 325 dbSNP
rs1177502760 328 dbSNP
rs377254659 330 dbSNP
rs964746935 342 dbSNP
rs1350928970 345 dbSNP
rs1461411651 349 dbSNP
rs774679967 355 dbSNP
rs760079286 366 dbSNP
rs1002052801 370 dbSNP
rs181435202 373 dbSNP
rs1317489439 376 dbSNP
rs1453604903 385 dbSNP
rs1405470761 399 dbSNP
rs1334718476 400 dbSNP
rs1464486913 404 dbSNP
rs896320557 406 dbSNP
rs1346965366 419 dbSNP
rs920726716 420 dbSNP
rs1418337168 421 dbSNP
rs1359513279 423 dbSNP
rs1400217648 427 dbSNP
rs1185081673 431 dbSNP
rs1279620176 436 dbSNP
rs930913598 442 dbSNP
rs1241998987 444 dbSNP
rs1013779200 448 dbSNP
rs1179537844 462 dbSNP
rs1352991182 462 dbSNP
rs1261885446 469 dbSNP
rs984149767 479 dbSNP
rs908112295 491 dbSNP
rs1422341343 492 dbSNP
rs1294343647 494 dbSNP
rs1247008904 497 dbSNP
rs939698495 506 dbSNP
rs1323387409 517 dbSNP
rs570263931 520 dbSNP
rs75803331 521 dbSNP
rs1362729615 523 dbSNP
rs895589096 524 dbSNP
rs1452924126 526 dbSNP
rs1358413352 532 dbSNP
rs948420004 536 dbSNP
rs753154996 537 dbSNP
rs1162243100 540 dbSNP
rs1217616234 544 dbSNP
rs1265475948 546 dbSNP
rs1261776381 548 dbSNP
rs1186470459 549 dbSNP
rs1487562759 550 dbSNP
rs1482331584 553 dbSNP
rs1223777740 554 dbSNP
rs1359161286 555 dbSNP
rs1229848540 568 dbSNP
rs760247397 570 dbSNP
rs1016477396 577 dbSNP
rs557321300 582 dbSNP
rs1415164519 587 dbSNP
rs555975023 590 dbSNP
rs186452418 599 dbSNP
rs1338242207 600 dbSNP
rs923457440 605 dbSNP
rs1032038865 607 dbSNP
rs541805692 609 dbSNP
rs770655618 610 dbSNP
rs1419976691 618 dbSNP
rs891702180 621 dbSNP
rs1008877072 625 dbSNP
rs1373165922 640 dbSNP
rs1169054554 643 dbSNP
rs1018872380 647 dbSNP
rs977780049 652 dbSNP
rs964772591 655 dbSNP
rs1027735599 656 dbSNP
rs975193282 656 dbSNP
rs952345457 659 dbSNP
rs1481047234 662 dbSNP
rs1446688432 664 dbSNP
rs1250832632 671 dbSNP
rs1216944766 677 dbSNP
rs1175500309 679 dbSNP
rs776451746 685 dbSNP
rs1285168726 690 dbSNP
rs1224011564 692 dbSNP
rs983623780 695 dbSNP
rs989313138 717 dbSNP
rs555334497 718 dbSNP
rs1221991273 719 dbSNP
rs913297722 720 dbSNP
rs1308346979 721 dbSNP
rs925749124 727 dbSNP
rs992510046 736 dbSNP
rs1407623702 741 dbSNP
rs3810021 746 dbSNP
rs948455954 747 dbSNP
rs1044579144 752 dbSNP
rs925718544 753 dbSNP
rs1420041049 754 dbSNP
rs189292280 755 dbSNP
rs927271339 756 dbSNP
rs530940023 763 dbSNP
rs9965298 766 dbSNP
rs891733185 771 dbSNP
rs1344135619 772 dbSNP
rs1273002834 780 dbSNP
rs180780252 781 dbSNP
rs1013392569 787 dbSNP
rs1047470766 791 dbSNP
rs1190073127 795 dbSNP
rs1444076558 804 dbSNP
rs186341496 807 dbSNP
rs372819835 808 dbSNP
rs1414402666 818 dbSNP
rs1400777282 819 dbSNP
rs1238008161 821 dbSNP
rs1040354703 823 dbSNP
rs1440724189 833 dbSNP
rs900549764 839 dbSNP
rs1160779231 841 dbSNP
rs1392882053 846 dbSNP
rs1005916696 849 dbSNP
rs1176224694 854 dbSNP
rs1380041779 857 dbSNP
rs9965485 858 dbSNP
rs190745230 867 dbSNP
rs964390938 869 dbSNP
rs1005477630 870 dbSNP
rs996860476 872 dbSNP
rs1377504033 882 dbSNP
rs561534139 888 dbSNP
rs1351177275 894 dbSNP
rs1300911962 895 dbSNP
rs1237530421 909 dbSNP
rs866718008 915 dbSNP
rs955062573 920 dbSNP
rs960957605 927 dbSNP
rs1446721246 928 dbSNP
rs988940633 937 dbSNP
rs913328776 943 dbSNP
rs1320898460 945 dbSNP
rs1383227956 950 dbSNP
rs1218865182 952 dbSNP
rs992374611 957 dbSNP
rs1386159280 964 dbSNP
rs968824555 970 dbSNP
rs1471874960 992 dbSNP
rs9965418 994 dbSNP
rs979780082 995 dbSNP
rs927311617 999 dbSNP
rs1314005885 1000 dbSNP
rs937347411 1004 dbSNP
rs1055467013 1005 dbSNP
rs925717685 1015 dbSNP
rs549451125 1018 dbSNP
rs1227350297 1033 dbSNP
rs1353681244 1036 dbSNP
rs1271378619 1040 dbSNP
rs1052891335 1041 dbSNP
rs917820102 1043 dbSNP
rs949248234 1044 dbSNP
rs1180909447 1047 dbSNP
rs944539698 1055 dbSNP
rs1040301385 1069 dbSNP
rs1050377 1070 dbSNP
rs540776042 1071 dbSNP
rs886268778 1073 dbSNP
rs1463625380 1077 dbSNP
rs1168505845 1078 dbSNP
rs1477532483 1090 dbSNP
rs1049032175 1091 dbSNP
rs1191386356 1101 dbSNP
rs1490790135 1102 dbSNP
rs1169261772 1108 dbSNP
rs1400961133 1113 dbSNP
rs1449457955 1114 dbSNP
rs887869707 1115 dbSNP
rs1214707591 1128 dbSNP
rs183214620 1141 dbSNP
rs1467108738 1148 dbSNP
rs1004938213 1150 dbSNP
rs1037400361 1154 dbSNP
rs1274572912 1156 dbSNP
rs1436095980 1160 dbSNP
rs369016681 1162 dbSNP
rs1013755548 1165 dbSNP
rs1329771294 1169 dbSNP
rs1398161029 1171 dbSNP
rs995832469 1174 dbSNP
rs1031003342 1179 dbSNP
rs1369955016 1189 dbSNP
rs1023923313 1190 dbSNP
rs551428185 1196 dbSNP
rs571391942 1199 dbSNP
rs1425621932 1202 dbSNP
rs1277580230 1206 dbSNP
rs969650907 1209 dbSNP
rs1476912010 1216 dbSNP
rs1234303415 1223 dbSNP
rs1198851543 1230 dbSNP
rs980195038 1231 dbSNP
rs1032650896 1235 dbSNP
rs1206139446 1235 dbSNP
rs1319277870 1240 dbSNP
rs1301185709 1247 dbSNP
rs957351218 1248 dbSNP
rs746860773 1253 dbSNP
rs113187550 1259 dbSNP
rs1375950227 1259 dbSNP
rs58865685 1259 dbSNP
rs954951507 1267 dbSNP
rs1302126463 1274 dbSNP
rs1374793918 1278 dbSNP
rs1451371455 1288 dbSNP
rs35462023 1288 dbSNP
rs1222707444 1291 dbSNP
rs1359738427 1292 dbSNP
rs1470918281 1292 dbSNP
rs1175247296 1293 dbSNP
rs145227160 1293 dbSNP
rs67699661 1293 dbSNP
rs1409840462 1294 dbSNP
rs1235837795 1297 dbSNP
rs199892853 1297 dbSNP
rs988558931 1297 dbSNP
rs1010485566 1300 dbSNP
rs1476604407 1301 dbSNP
rs1483285515 1306 dbSNP
rs1255969308 1307 dbSNP
rs537178058 1308 dbSNP
rs1192375672 1313 dbSNP
rs1208596174 1321 dbSNP
rs1423718573 1323 dbSNP
rs912975101 1324 dbSNP
rs1287126747 1327 dbSNP
rs1020504539 1329 dbSNP
rs944570648 1331 dbSNP
rs14936 1335 dbSNP
rs1351694820 1337 dbSNP
rs921861734 1342 dbSNP
rs1453546006 1349 dbSNP
rs1378492168 1352 dbSNP
rs1302226283 1359 dbSNP
rs762448425 1366 dbSNP
rs186014037 1370 dbSNP
rs373220610 1376 dbSNP
rs978872771 1390 dbSNP
rs116613077 1391 dbSNP
rs1405774242 1398 dbSNP
rs958978370 1404 dbSNP
rs1423925536 1406 dbSNP
rs868816545 1410 dbSNP
rs76763034 1429 dbSNP
rs1180644818 1430 dbSNP
rs769918920 1436 dbSNP
rs777705782 1443 dbSNP
rs555380277 1445 dbSNP
rs1297733178 1446 dbSNP
rs1487504260 1458 dbSNP
rs949340971 1466 dbSNP
rs1294273164 1473 dbSNP
rs1341176028 1483 dbSNP
rs983311672 1485 dbSNP
rs1221055104 1487 dbSNP
rs1282964841 1495 dbSNP
rs896560519 1497 dbSNP
rs1298723262 1501 dbSNP
rs548341821 1501 dbSNP
rs1399225496 1512 dbSNP
rs1358353509 1514 dbSNP
rs1304611706 1515 dbSNP
rs571982498 1521 dbSNP
rs907742693 1541 dbSNP
rs1429767124 1542 dbSNP
rs905456766 1550 dbSNP
rs1193547404 1551 dbSNP
rs1001085499 1558 dbSNP
rs1487530423 1558 dbSNP
rs1033002498 1559 dbSNP
rs750445789 1560 dbSNP
rs957093317 1561 dbSNP
rs1263337662 1566 dbSNP
rs10532459 1574 dbSNP
rs1263901401 1577 dbSNP
rs1206792225 1583 dbSNP
rs941839531 1591 dbSNP
rs541041009 1595 dbSNP
rs1184732903 1598 dbSNP
rs1318676345 1599 dbSNP
rs1367827434 1601 dbSNP
rs1473050579 1608 dbSNP
rs190428343 1612 dbSNP
rs772455501 1612 dbSNP
rs1164838920 1614 dbSNP
rs1378242011 1615 dbSNP
rs10502641 1619 dbSNP
rs183111375 1626 dbSNP
rs1361356107 1633 dbSNP
rs749573929 1633 dbSNP
rs563896174 1634 dbSNP
rs1400343841 1641 dbSNP
rs1170623910 1647 dbSNP
rs1384024942 1649 dbSNP
rs1051474567 1654 dbSNP
rs1200107719 1656 dbSNP
rs975898727 1656 dbSNP
rs890115414 1657 dbSNP
rs1010516761 1658 dbSNP
rs1449391440 1667 dbSNP
rs1286365149 1668 dbSNP
rs1197946488 1673 dbSNP
rs1315912881 1675 dbSNP
rs1020537369 1676 dbSNP
rs904707944 1680 dbSNP
rs1000342651 1681 dbSNP
rs1239818080 1683 dbSNP
rs1448471270 1686 dbSNP
rs931896750 1691 dbSNP
rs188146302 1701 dbSNP
rs1463604548 1702 dbSNP
rs909116526 1707 dbSNP
rs543258452 1709 dbSNP
rs1034852027 1711 dbSNP
rs559816374 1714 dbSNP
rs958850953 1719 dbSNP
rs993317581 1724 dbSNP
rs1173652258 1729 dbSNP
rs1465894120 1748 dbSNP
rs562479332 1750 dbSNP
rs951368680 1753 dbSNP
rs983344490 1756 dbSNP
rs1036346766 1761 dbSNP
rs1254851370 1763 dbSNP
rs1462699385 1764 dbSNP
rs907773820 1767 dbSNP
rs941869120 1769 dbSNP
rs1189490469 1770 dbSNP
rs1236186837 1778 dbSNP
rs973227528 1779 dbSNP
rs551340335 1780 dbSNP
rs1354058625 1784 dbSNP
rs1308062969 1789 dbSNP
rs1444004511 1801 dbSNP
rs921754533 1804 dbSNP
rs564986953 1805 dbSNP
rs1335490827 1813 dbSNP
rs931789960 1815 dbSNP
rs1455530161 1818 dbSNP
rs13512 1822 dbSNP
rs550807844 1823 dbSNP
rs865989286 1824 dbSNP
rs1157057288 1834 dbSNP
rs1455644676 1839 dbSNP
rs1473840071 1841 dbSNP
rs1369090568 1842 dbSNP
rs1001433543 1850 dbSNP
rs569787798 1851 dbSNP
rs945668284 1872 dbSNP
rs892691310 1876 dbSNP
rs1218596721 1878 dbSNP
rs199811308 1878 dbSNP
rs1284921152 1887 dbSNP
rs138437807 1888 dbSNP
rs1357870106 1890 dbSNP
rs759917949 1894 dbSNP
rs1000440429 1896 dbSNP
rs965773444 1898 dbSNP
rs1339292171 1907 dbSNP
rs1300569277 1910 dbSNP
rs142338115 1915 dbSNP
rs1360253132 1921 dbSNP
rs1310380941 1922 dbSNP
rs1407237283 1923 dbSNP
rs775982458 1924 dbSNP
rs1014368176 1936 dbSNP
rs1471844751 1937 dbSNP
rs1337216944 1942 dbSNP
rs565818392 1951 dbSNP
rs1230597879 1952 dbSNP
rs192379689 1956 dbSNP
rs1029160054 1961 dbSNP
rs761082035 1965 dbSNP
rs1254942244 1970 dbSNP
rs953274063 1972 dbSNP
rs1452911416 1977 dbSNP
rs1290144774 1982 dbSNP
rs1208787630 1987 dbSNP
rs1353620926 1989 dbSNP
rs557781540 1990 dbSNP
rs909156521 1995 dbSNP
rs951402013 2001 dbSNP
rs982706740 2006 dbSNP
rs1340320696 2008 dbSNP
rs1276624303 2022 dbSNP
rs1201621991 2027 dbSNP
rs1439045148 2028 dbSNP
rs763717251 2030 dbSNP
rs1323114050 2033 dbSNP
rs1457213137 2034 dbSNP
rs146435475 2038 dbSNP
rs1172754079 2043 dbSNP
rs1239771935 2049 dbSNP
rs1466028304 2075 dbSNP
rs917890862 2078 dbSNP
rs949362164 2083 dbSNP
rs1478881046 2099 dbSNP
rs182643485 2107 dbSNP
rs1197687171 2119 dbSNP
rs1045186715 2122 dbSNP
rs921811746 2124 dbSNP
rs1199826922 2128 dbSNP
rs1317904472 2161 dbSNP
rs926686182 2167 dbSNP
rs533739619 2172 dbSNP
rs556783829 2174 dbSNP
rs1221340647 2179 dbSNP
rs1368707310 2185 dbSNP
rs936877753 2187 dbSNP
rs537502155 2189 dbSNP
rs761565737 2190 dbSNP
rs75888622 2196 dbSNP
rs945699190 2198 dbSNP
rs1178599841 2205 dbSNP
rs1398759626 2206 dbSNP
rs138732589 2211 dbSNP
rs892731443 2211 dbSNP
rs1465168119 2220 dbSNP
rs1041372570 2221 dbSNP
rs765010630 2222 dbSNP
rs1009738833 2232 dbSNP
rs1168209009 2247 dbSNP
rs750044025 2249 dbSNP
rs925605449 2250 dbSNP
rs1171662620 2251 dbSNP
rs1452121986 2257 dbSNP
rs1239611889 2260 dbSNP
rs1384764344 2261 dbSNP
rs901558768 2264 dbSNP
rs1231711285 2265 dbSNP
rs1331284289 2267 dbSNP
rs187906833 2282 dbSNP
rs1313171001 2283 dbSNP
rs1278284753 2284 dbSNP
rs1028772187 2293 dbSNP
rs1310250224 2296 dbSNP
rs1446199878 2301 dbSNP
rs1374724644 2307 dbSNP
rs573198522 2310 dbSNP
rs1450070827 2311 dbSNP
rs953232459 2322 dbSNP
rs1333341957 2323 dbSNP
rs1275694463 2327 dbSNP
rs9945981 2329 dbSNP
rs1199161910 2331 dbSNP
rs1016482995 2333 dbSNP
rs1252906772 2340 dbSNP
rs1438571382 2342 dbSNP
rs894654388 2344 dbSNP
rs1208980137 2359 dbSNP
rs1184122185 2369 dbSNP
rs1483824421 2379 dbSNP
rs1237411366 2384 dbSNP
rs1209257868 2386 dbSNP
rs1489464819 2389 dbSNP
rs1287062004 2406 dbSNP
rs1239648086 2408 dbSNP
rs1315225261 2417 dbSNP
rs1314871089 2421 dbSNP
rs1229965120 2422 dbSNP
rs1379879327 2431 dbSNP
rs1302170113 2433 dbSNP
rs1266950946 2436 dbSNP
rs961963490 2437 dbSNP
rs1433932588 2440 dbSNP
rs1362174224 2445 dbSNP
rs1298454032 2446 dbSNP
rs1201760095 2449 dbSNP
rs1418652037 2449 dbSNP
rs971936205 2450 dbSNP
rs1166382750 2451 dbSNP
rs1014814069 2456 dbSNP
rs1045796482 2461 dbSNP
rs887157892 2465 dbSNP
rs1186391099 2466 dbSNP
rs617849 2481 dbSNP
rs1264288452 2484 dbSNP
rs1216181356 2486 dbSNP
rs1477801219 2487 dbSNP
rs1171980124 2491 dbSNP
rs1222464974 2492 dbSNP
rs1016931041 2508 dbSNP
rs1375233525 2512 dbSNP
rs970746112 2513 dbSNP
rs1231325733 2515 dbSNP
rs962667224 2516 dbSNP
rs1342154524 2526 dbSNP
rs530819459 2528 dbSNP
rs981161459 2529 dbSNP
rs1359508734 2532 dbSNP
rs1456740423 2534 dbSNP
rs1293232625 2535 dbSNP
rs1294905227 2535 dbSNP
rs70941620 2535 dbSNP
rs879440498 2535 dbSNP
rs617760 2536 dbSNP
rs617759 2537 dbSNP
rs1053964764 2540 dbSNP
rs530244763 2541 dbSNP
rs565135558 2543 dbSNP
rs1193480873 2546 dbSNP
rs1427085209 2554 dbSNP
rs548880039 2563 dbSNP
rs777952614 2564 dbSNP
rs1488209841 2569 dbSNP
rs748052876 2584 dbSNP
rs1211743036 2585 dbSNP
rs12922 2585 dbSNP
rs945544447 2586 dbSNP
rs953259140 2588 dbSNP
rs376752982 2589 dbSNP
rs534904458 2590 dbSNP
rs551708872 2591 dbSNP
rs536623339 2592 dbSNP
rs1460814767 2593 dbSNP
rs571214084 2594 dbSNP
rs977149291 2595 dbSNP
rs1224964118 2597 dbSNP
rs1177068491 2600 dbSNP
rs370220111 2601 dbSNP
rs536670327 2606 dbSNP
rs556983730 2607 dbSNP
rs1194425455 2612 dbSNP
rs1056068399 2615 dbSNP
rs1458255067 2628 dbSNP
rs192689003 2629 dbSNP
rs536394420 2634 dbSNP
rs1257482483 2637 dbSNP
rs1337232730 2637 dbSNP
rs776398699 2637 dbSNP
rs1346786432 2638 dbSNP
rs1300791141 2646 dbSNP
rs950252303 2648 dbSNP
rs1328796821 2652 dbSNP
rs1164584625 2653 dbSNP
rs1303858766 2657 dbSNP
rs1434471243 2663 dbSNP
rs1369380633 2670 dbSNP
rs1045910169 2676 dbSNP
rs1426215371 2684 dbSNP
rs2946570 2687 dbSNP
rs1160653466 2696 dbSNP
rs1156484146 2698 dbSNP
rs1440434716 2700 dbSNP
rs1016108112 2701 dbSNP
rs1181019011 2702 dbSNP
rs10715274 2703 dbSNP
rs1236246188 2703 dbSNP
rs1278370180 2703 dbSNP
rs1292976278 2703 dbSNP
rs1342839612 2703 dbSNP
rs1353814668 2703 dbSNP
rs1491430169 2703 dbSNP
rs547488696 2703 dbSNP
rs760387363 2703 dbSNP
rs796886252 2703 dbSNP
rs63181265 2704 dbSNP
rs1400088076 2705 dbSNP
rs111607913 2706 dbSNP
rs1414599276 2708 dbSNP
rs1373989092 2711 dbSNP
rs897695386 2714 dbSNP
rs1420480533 2715 dbSNP
rs993317794 2716 dbSNP
rs1024919932 2717 dbSNP
rs1156970632 2717 dbSNP
rs1290059424 2717 dbSNP
rs1188517968 2718 dbSNP
rs1218345480 2718 dbSNP
rs553283237 2718 dbSNP
rs1283099743 2719 dbSNP
rs1376966533 2719 dbSNP
rs1202900892 2721 dbSNP
rs1395382784 2721 dbSNP
rs772585826 2721 dbSNP
rs199544521 2722 dbSNP
rs71265099 2722 dbSNP
rs1233159088 2724 dbSNP
rs977331981 2726 dbSNP
rs1280418592 2727 dbSNP
rs1400990387 2729 dbSNP
rs1326129393 2731 dbSNP
rs1237628550 2732 dbSNP
rs1004279375 2735 dbSNP
rs970608734 2754 dbSNP
rs573111170 2771 dbSNP
rs1165576856 2780 dbSNP
rs1284181020 2784 dbSNP
rs1415572204 2789 dbSNP
rs980808146 2792 dbSNP
rs1038404676 2807 dbSNP
rs958148174 2810 dbSNP
rs1353170405 2811 dbSNP
rs576971413 2812 dbSNP
rs573538331 2822 dbSNP
rs913983180 2833 dbSNP
rs945580556 2841 dbSNP
rs558846016 2852 dbSNP
rs997231622 2855 dbSNP
rs1028915901 2863 dbSNP
rs575203132 2866 dbSNP
rs1219688054 2874 dbSNP
rs976871347 2895 dbSNP
rs1268657522 2896 dbSNP
rs953385547 2909 dbSNP
rs922876389 2920 dbSNP
rs1008809640 2929 dbSNP
rs932868456 2932 dbSNP
rs1325383286 2940 dbSNP
rs1438782499 2952 dbSNP
rs1018811409 2956 dbSNP
rs967189742 2959 dbSNP
rs1050105778 2961 dbSNP
rs888740896 2965 dbSNP
rs1165808114 2969 dbSNP
rs941703044 2970 dbSNP
rs374745252 2976 dbSNP
rs544356064 2977 dbSNP
rs1466734622 2983 dbSNP
rs1240619177 2986 dbSNP
rs897559692 2994 dbSNP
rs1446855983 2995 dbSNP
rs1271239715 2998 dbSNP
rs993347543 2999 dbSNP
rs1379319416 3002 dbSNP
rs977180298 3004 dbSNP
rs540512796 3005 dbSNP
rs1379153557 3006 dbSNP
rs957062463 3007 dbSNP
rs72957981 3009 dbSNP
rs1356896438 3015 dbSNP
rs1465522291 3020 dbSNP
rs775705550 3020 dbSNP
rs915571144 3024 dbSNP
rs1002490516 3028 dbSNP
rs1172597078 3038 dbSNP
rs950389192 3039 dbSNP
rs1033596895 3050 dbSNP
rs1381564365 3061 dbSNP
rs1178283827 3079 dbSNP
rs1231658355 3079 dbSNP
rs74555820 3079 dbSNP
rs561359111 3080 dbSNP
rs1308182749 3081 dbSNP
rs1176924543 3086 dbSNP
rs981642381 3091 dbSNP
rs1224535401 3092 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 10982.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' auuucaUUGAA--GGUGAACCGa 5'
                |||||  ||||||||| 
Target 5' acauccAACUUCACCACUUGGCu 3'
 		7 - 29
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000436190.2 | 3UTR | UCACAUACAUCCAACUUCACCACUUGGCUGCUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
117 hsa-miR-4480 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT056040 MLLT10 MLLT10, histone lysine methyltransferase DOT1L cofactor 2 2
MIRT091259 FXR1 FMR1 autosomal homolog 1 2 4
MIRT117347 MAPRE2 microtubule associated protein RP/EB family member 2 2 2
MIRT234960 ZNF439 zinc finger protein 439 2 4
MIRT441356 ZNF75A zinc finger protein 75a 2 2
MIRT441426 STXBP2 syntaxin binding protein 2 2 2
MIRT441455 ZNF488 zinc finger protein 488 2 4
MIRT441524 ZBTB10 zinc finger and BTB domain containing 10 2 2
MIRT441576 EXOC5 exocyst complex component 5 2 2
MIRT441597 ABCB5 ATP binding cassette subfamily B member 5 2 6
MIRT441610 ATP13A4 ATPase 13A4 2 2
MIRT441698 CIT citron rho-interacting serine/threonine kinase 2 2
MIRT441714 FGF9 fibroblast growth factor 9 2 2
MIRT441784 MAPK8 mitogen-activated protein kinase 8 2 4
MIRT441795 EXOSC2 exosome component 2 2 2
MIRT441868 RNASEL ribonuclease L 2 2
MIRT441900 SLC9A8 solute carrier family 9 member A8 2 6
MIRT441919 FAM217B family with sequence similarity 217 member B 2 2
MIRT441928 C1orf109 chromosome 1 open reading frame 109 2 2
MIRT441938 RIMKLB ribosomal modification protein rimK like family member B 2 2
MIRT442157 DPY19L1 dpy-19 like C-mannosyltransferase 1 2 2
MIRT442172 AZF1 azoospermia factor 1 2 2
MIRT442208 IRS1 insulin receptor substrate 1 2 2
MIRT442237 DDX19A DEAD-box helicase 19A 2 2
MIRT442366 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT442572 SDC1 syndecan 1 2 2
MIRT442604 ZNF391 zinc finger protein 391 2 2
MIRT442609 MRC1 mannose receptor C-type 1 2 2
MIRT442647 POP4 POP4 homolog, ribonuclease P/MRP subunit 2 2
MIRT442658 OIP5 Opa interacting protein 5 2 6
MIRT442686 COX15 COX15, cytochrome c oxidase assembly homolog 2 2
MIRT442773 JAG1 jagged 1 2 2
MIRT442785 CHD8 chromodomain helicase DNA binding protein 8 2 2
MIRT442895 PLCB3 phospholipase C beta 3 2 2
MIRT442941 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT442959 SGCD sarcoglycan delta 2 2
MIRT442998 EDAR ectodysplasin A receptor 2 2
MIRT443017 C21orf91 chromosome 21 open reading frame 91 2 2
MIRT443064 CASP5 caspase 5 2 2
MIRT443069 ABLIM1 actin binding LIM protein 1 2 2
MIRT443208 VPS36 vacuolar protein sorting 36 homolog 2 2
MIRT443237 ANKRD26 ankyrin repeat domain 26 2 2
MIRT443253 A1CF APOBEC1 complementation factor 2 2
MIRT443329 JUN Jun proto-oncogene, AP-1 transcription factor subunit 2 2
MIRT443333 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT443349 STX7 syntaxin 7 2 2
MIRT443452 CLIC5 chloride intracellular channel 5 2 2
MIRT443547 GPR35 G protein-coupled receptor 35 2 2
MIRT443616 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT443626 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT443730 ALPK3 alpha kinase 3 2 2
MIRT443786 ST13 ST13, Hsp70 interacting protein 2 2
MIRT443852 RGS6 regulator of G protein signaling 6 2 2
MIRT445483 KLF5 Kruppel like factor 5 2 2
MIRT471105 PHLDA2 pleckstrin homology like domain family A member 2 2 2
MIRT472329 NETO2 neuropilin and tolloid like 2 2 4
MIRT472391 NDRG3 NDRG family member 3 2 2
MIRT473522 MAX MYC associated factor X 2 2
MIRT473874 MAFK MAF bZIP transcription factor K 2 6
MIRT476021 GTF2A1 general transcription factor IIA subunit 1 2 2
MIRT478320 DDN dendrin 2 2
MIRT492049 TNFSF9 TNF superfamily member 9 2 2
MIRT494851 ANKRD24 ankyrin repeat domain 24 2 2
MIRT494991 TSSC1 EARP complex and GARP complex interacting protein 1 2 2
MIRT495034 RASSF2 Ras association domain family member 2 2 2
MIRT495111 NOL10 nucleolar protein 10 2 2
MIRT495113 TRADD TNFRSF1A associated via death domain 2 2
MIRT495131 METTL24 methyltransferase like 24 2 2
MIRT495147 STAC2 SH3 and cysteine rich domain 2 2 2
MIRT495297 NUP54 nucleoporin 54 2 2
MIRT495341 RTN2 reticulon 2 2 2
MIRT495347 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT496682 DUSP18 dual specificity phosphatase 18 2 2
MIRT496743 TGFBR1 transforming growth factor beta receptor 1 2 2
MIRT496841 KCNIP2 potassium voltage-gated channel interacting protein 2 2 2
MIRT496852 GPAM glycerol-3-phosphate acyltransferase, mitochondrial 2 2
MIRT496889 FOXP1 forkhead box P1 2 2
MIRT496922 CLMN calmin 2 2
MIRT496990 TMEM231 transmembrane protein 231 2 2
MIRT497002 SNAP25 synaptosome associated protein 25 2 2
MIRT497058 C6orf223 chromosome 6 open reading frame 223 2 2
MIRT500529 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 6
MIRT506048 PPP6C protein phosphatase 6 catalytic subunit 2 4
MIRT512163 CD164 CD164 molecule 2 6
MIRT527051 RDH13 retinol dehydrogenase 13 2 2
MIRT532282 TNFSF14 TNF superfamily member 14 2 2
MIRT534083 SPRY4 sprouty RTK signaling antagonist 4 2 2
MIRT534605 RNASEH1 ribonuclease H1 2 4
MIRT539509 ACSS3 acyl-CoA synthetase short chain family member 3 2 2
MIRT543069 ARID4B AT-rich interaction domain 4B 2 2
MIRT544233 CCBL2 kynurenine aminotransferase 3 2 2
MIRT544686 ZNF224 zinc finger protein 224 2 4
MIRT546269 TMEM30A transmembrane protein 30A 2 4
MIRT559069 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT562768 RMI2 RecQ mediated genome instability 2 2 2
MIRT563974 HCFC1 host cell factor C1 2 2
MIRT564086 NSA2 NSA2, ribosome biogenesis homolog 2 2
MIRT564525 PDXP pyridoxal phosphatase 2 2
MIRT564613 ZNF703 zinc finger protein 703 2 2
MIRT566252 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT614420 ZNF440 zinc finger protein 440 2 2
MIRT618789 MTHFR methylenetetrahydrofolate reductase 2 2
MIRT619160 PPDPF pancreatic progenitor cell differentiation and proliferation factor 2 2
MIRT641778 ZDHHC7 zinc finger DHHC-type containing 7 2 4
MIRT653680 SLC25A36 solute carrier family 25 member 36 2 2
MIRT657861 GJD2 gap junction protein delta 2 2 2
MIRT660879 ADCYAP1R1 ADCYAP receptor type I 2 2
MIRT668781 DAAM1 dishevelled associated activator of morphogenesis 1 2 4
MIRT688559 DCAF16 DDB1 and CUL4 associated factor 16 2 2
MIRT695393 WDR41 WD repeat domain 41 2 2
MIRT698680 TCEA1 transcription elongation factor A1 2 2
MIRT700974 PDIA6 protein disulfide isomerase family A member 6 2 2
MIRT705055 C5orf15 chromosome 5 open reading frame 15 2 2
MIRT705864 AFF1 AF4/FMR2 family member 1 2 2
MIRT710586 CDCA4 cell division cycle associated 4 2 2
MIRT713904 IGF2R insulin like growth factor 2 receptor 2 2
MIRT717133 SKI SKI proto-oncogene 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4480 Cisplatin 5460033 NSC119875 approved sensitive cell line (CIS)
hsa-miR-4480 Cisplatin 5460033 NSC119875 approved resistant cell line (A549)

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