miRTarBase - #MIRT118004


—
pre-miRNA Information
pre-miRNA hsa-mir-1247   
Genomic Coordinates chr14: 101560287 - 101560422
Synonyms MIRN1247, hsa-mir-1247, MIR1247
Description Homo sapiens miR-1247 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-1247-3p
Sequence 74| CCCCGGGAACGUCGAGACUGGAGC |97
Evidence Not_experimental
Experiments
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs765946490 1 dbSNP
rs1167774642 3 dbSNP
rs369874810 4 dbSNP
rs1295169065 5 dbSNP
rs1368557653 7 dbSNP
rs375254504 10 dbSNP
rs1049152389 16 dbSNP
rs774601647 21 dbSNP
rs1317190334 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol BLOC1S3   
Synonyms BLOS3, HPS8, RP
Description biogenesis of lysosomal organelles complex 1 subunit 3
Transcript NM_212550   
Expression
Putative miRNA Targets on BLOC1S3
3'UTR of BLOC1S3
(miRNA target sites are highlighted)		 
>BLOC1S3|NM_212550|3'UTR
   1 CCATGATTCTACTTCCCAACCTGACTGCAATTTGGGGGTAGGCCTTGCTGCCTCTGGGACCTGACTCTGTCTCCTGTGTC
  81 TCTTATCACCCCCCACCCCCGCTCCCATCTTGGTGTCACCCATGGGGGCTAATCCGGTCCCCTTGGATAATGCTTTATAT
 161 TGGATATAGTTCAACCCCTACTGCGGAGACCAGGGCCCCACTATCCTTAGATCTGGTTCCTCTCCCGATCCTGACCCTGC
 241 CGCCTGGTTCTGAGCCTTCCCCTGGGGCTTGGCTCCAGCCTTTGTTACATAGTTGCTCCTTAATCTGTTTCCACCCTGGG
 321 GGCTCACCAATTTTTTTTTTTTTTTTTTTTTTTTGGAGACAGGGTGTTTATCTGTCACCCAGGCTAGAGTGCAGTGGCGG
 401 GATTACTGCTCACTGCAACCTCGACCTCCTGGGCTCAAGTGATCCTCCCAGCTCAGCCTTCAAGAGTAGCTGGGACTGCA
 481 GACCTGCACCACCACGTCCAGCTGCCCGGTTAATTTTTTTCTGTCGGTTTGAAGAGGGGAGAAGGTCTCACTATGTTGCC
 561 CAGGCTTGTCTCAAACTCCCGGGCTCAAGCAATCCTCCCACTGTGGCGTCCCAAAGTGCTGGGGTTACAGGTGTGAGCCA
 641 CCACACACTGGGCTCTGCTCTGCCTTTCTGAGTTTGGTTTCTGCTTATGGTGGGGAGCTTGTTCCCGTTCTTCCCACAAG
 721 AACCCAGGATGTGGCACAGCTTCCCTGCCGTCTTCCTTCACTCAGTTGGCTACGCCTCCCATCCTAGCTCCACTTCCAGA
 801 ACTGCCTTCACCCTAGGCTGGGTCCTTGTTTTGTTTTTAGAGACAGGGTCTCACTGTGTCTCCCAGGCTGGAGTACAGTG
 881 GCGTGATCTCGGCTCACTGCCACCTCCACCTCCCGAGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTAGGATT
 961 ACAGGCATGCACCACCACGCCTGGCTACTTTTTATATTTTTAGTAGAGATGAGGTTTCACCTTGTTGGCCAGGCTGGTCT
1041 CGAACTCCTGGCCTCAGGTGATCCACCCGCCTCACCTCCTAAAATGCTGGGATTACAGGCGTGGGCCACTGCGCCTAGCC
1121 AGCTGGGTCCTTGTTCTGCTGCCCAAGCTTGGCCCTGGTTCCGTGTGCTGGTTCTACTTTTTGTTCTCCCATCTGCCTCC
1201 TGCCTCCTCCCCTTTGAGCTTAGCCCCGCCCTCTCAGCCTGATTTCTGTTTCCCAAGTCCAGCAGTGTCGTGGGATAGGT
1281 TTTGCTTTCTTTTACTGTCTCCATCCTACTTACACCTCCCTGATCCTGGGGTCTGGGGACTCCCCATGGTTTCCTTCCTT
1361 CTGCAGGCCCAAAATGATGGCCCCTCTTAACCCAAGGCAGGGGATCTTCCTCCCAACTCCCTGGACCAAGGTGGCATTTC
1441 CTGCACACCCCTCCAGGCCAAGATGATGCTCGCTCTCAACTCTGTAGGCCAAGGTGGCGTCTCCTCTTGACTCTCCAGAC
1521 CTAAAGTGACACCCTTCAGGCACTTCGGGCCCAATTCAGCCCAGTCCTGGTGCTTTCAGCGCCAGATGACAGCACTTTGC
1601 AGATAAGAACGATATGATGTGTGGATTTCACTACATTTGGCTCCTGGATGCTATAAAAGGACTTGGATTTCTGACTTGGC
1681 TCAGGGACTGGGGTTAGCAGTCTCTTTCTGCTCCTTTTCACCTGTGTTTTCTTCCGATCCCAGCTCTGGTCCCTCAGCCG
1761 CATTCATATTTACTCTCCTCTCCCAGCCTGATATCCCTGTCCCTCATCTCAACCCGAAGCCAAGATCTGAGCCCCCAAGA
1841 TGGAGAATGGGGAGGAGCTTTTTATGGCGGACTGATTAAAACTCTTAAGCATTTACAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cgaGGUCAGAG-CUGCAAGGGCCCc 5'
             |: |||||  ||  ||||||| 
Target 5' aggCTTGTCTCAAAC--TCCCGGGc 3'
 562 - 584 157.00 -21.70
2 
miRNA  3' cgAGGUCAGAGCUGCAAGGGCCCc 5'
            | ||  ||||||  |||:||| 
Target 5' acTGCAACCTCGAC-CTCCTGGGc 3'
 412 - 434 149.00 -25.70
3 
miRNA  3' cgAGGUCAGAGCUGCAAGGGCCCc 5'
            | ||  |||  :| |||:||| 
Target 5' ctTACA-CCTCCCTGATCCTGGGg 3'
 1309 - 1331 137.00 -20.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
195447 1 ClinVar
329479 156 ClinVar
COSN23015398 11 COSMIC
COSN28884052 13 COSMIC
COSN27653544 37 COSMIC
COSN31535299 102 COSMIC
COSN15623317 110 COSMIC
COSN31583850 113 COSMIC
COSN26958099 169 COSMIC
COSN5858147 185 COSMIC
COSN15623318 257 COSMIC
COSN26644396 317 COSMIC
COSN26505171 331 COSMIC
COSN19580292 414 COSMIC
COSN30542512 568 COSMIC
COSN31594737 592 COSMIC
COSN8605958 600 COSMIC
COSN31543256 608 COSMIC
COSN30511947 657 COSMIC
COSN30511945 658 COSMIC
COSN31489290 671 COSMIC
COSN26640160 774 COSMIC
COSN15623319 780 COSMIC
COSN31570520 826 COSMIC
COSN30122016 916 COSMIC
COSN31539546 1070 COSMIC
COSN26635184 1168 COSMIC
COSN31544225 1187 COSMIC
COSN31588084 1192 COSMIC
COSN31543885 1229 COSMIC
COSN30120749 1286 COSMIC
COSN19493004 1313 COSMIC
COSN15623320 1326 COSMIC
COSN31590289 1381 COSMIC
COSN31550151 1396 COSMIC
COSN16129487 1490 COSMIC
COSN15623321 1494 COSMIC
COSN25871376 1499 COSMIC
COSN21154317 1547 COSMIC
COSN32057296 1581 COSMIC
COSN31575655 1674 COSMIC
COSN15779592 1691 COSMIC
COSN28682887 1814 COSMIC
COSN20093621 1830 COSMIC
COSN31530515 1839 COSMIC
COSN30528601 1876 COSMIC
COSN20618800 1891 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs142688123 1 dbSNP
rs761566196 3 dbSNP
rs1444892085 4 dbSNP
rs376405849 7 dbSNP
rs764955305 9 dbSNP
rs35338638 10 dbSNP
rs750170358 12 dbSNP
rs1384993823 16 dbSNP
rs368261458 18 dbSNP
rs372509527 21 dbSNP
rs377178343 22 dbSNP
rs781362128 24 dbSNP
rs187399565 29 dbSNP
rs770094438 30 dbSNP
rs1363948014 31 dbSNP
rs777965410 32 dbSNP
rs749527953 35 dbSNP
rs770932040 36 dbSNP
rs374759575 40 dbSNP
rs772376105 40 dbSNP
rs768620173 46 dbSNP
rs776477608 48 dbSNP
rs532054271 50 dbSNP
rs765184324 52 dbSNP
rs750035810 53 dbSNP
rs1448705096 54 dbSNP
rs1288330616 58 dbSNP
rs902867467 68 dbSNP
rs886054491 70 dbSNP
rs1311616229 75 dbSNP
rs1334341583 83 dbSNP
rs1238085424 89 dbSNP
rs1032770235 90 dbSNP
rs1304448782 91 dbSNP
rs928621630 95 dbSNP
rs1351464042 96 dbSNP
rs552139493 97 dbSNP
rs1053258669 101 dbSNP
rs1022781192 106 dbSNP
rs971751005 107 dbSNP
rs891971173 110 dbSNP
rs1379239990 114 dbSNP
rs947548441 116 dbSNP
rs981398043 127 dbSNP
rs1245381309 129 dbSNP
rs1043521419 137 dbSNP
rs903581380 141 dbSNP
rs1305165933 147 dbSNP
rs1198747097 148 dbSNP
rs1448031490 156 dbSNP
rs570559399 156 dbSNP
rs886054492 158 dbSNP
rs974035116 159 dbSNP
rs1007254633 169 dbSNP
rs1221222672 175 dbSNP
rs1017701626 176 dbSNP
rs1369428507 177 dbSNP
rs1272910928 184 dbSNP
rs1435531346 193 dbSNP
rs932719183 196 dbSNP
rs901486118 197 dbSNP
rs1467575606 201 dbSNP
rs997437119 208 dbSNP
rs1026203488 213 dbSNP
rs1422646601 214 dbSNP
rs1172319654 215 dbSNP
rs1478355408 223 dbSNP
rs1265904148 226 dbSNP
rs1457618347 226 dbSNP
rs908384591 227 dbSNP
rs1488002584 229 dbSNP
rs924156866 230 dbSNP
rs1423833572 231 dbSNP
rs1310616558 234 dbSNP
rs950565662 236 dbSNP
rs76467674 241 dbSNP
rs1016375313 242 dbSNP
rs970536894 245 dbSNP
rs148427902 247 dbSNP
rs1280007891 249 dbSNP
rs928647238 251 dbSNP
rs1398111549 255 dbSNP
rs938658189 261 dbSNP
rs1302866297 262 dbSNP
rs1449622721 268 dbSNP
rs1399221031 274 dbSNP
rs1174931466 276 dbSNP
rs1466457703 277 dbSNP
rs1426318538 281 dbSNP
rs6509200 286 dbSNP
rs913469463 287 dbSNP
rs947596880 291 dbSNP
rs1396672702 300 dbSNP
rs368390636 303 dbSNP
rs1183637718 306 dbSNP
rs189672488 308 dbSNP
rs371023414 314 dbSNP
rs1003084258 315 dbSNP
rs889927229 316 dbSNP
rs1259803827 319 dbSNP
rs568334676 321 dbSNP
rs1045877658 327 dbSNP
rs1259304857 329 dbSNP
rs1181470607 331 dbSNP
rs1223763058 331 dbSNP
rs1236613283 331 dbSNP
rs1240271818 331 dbSNP
rs1265946085 331 dbSNP
rs1306639984 331 dbSNP
rs1311452688 331 dbSNP
rs1319371395 331 dbSNP
rs1378607734 331 dbSNP
rs1446436917 331 dbSNP
rs1480194631 331 dbSNP
rs34965337 331 dbSNP
rs60498449 331 dbSNP
rs747825460 332 dbSNP
rs1295766348 333 dbSNP
rs1202883154 334 dbSNP
rs1456881519 336 dbSNP
rs1238832685 337 dbSNP
rs1038756617 355 dbSNP
rs1159285961 355 dbSNP
rs1421594896 355 dbSNP
rs1378636629 356 dbSNP
rs1178321433 360 dbSNP
rs1267843530 361 dbSNP
rs1418279847 361 dbSNP
rs1483413039 364 dbSNP
rs1192828255 365 dbSNP
rs537234718 367 dbSNP
rs1290989895 369 dbSNP
rs961274233 371 dbSNP
rs1478532390 373 dbSNP
rs1283428897 377 dbSNP
rs995488894 386 dbSNP
rs901521454 388 dbSNP
rs117001334 390 dbSNP
rs1407985937 391 dbSNP
rs1367434592 402 dbSNP
rs927543670 403 dbSNP
rs1026929560 406 dbSNP
rs1401908764 410 dbSNP
rs1047698629 411 dbSNP
rs1158240934 412 dbSNP
rs1466789499 414 dbSNP
rs1379612337 418 dbSNP
rs1466788232 419 dbSNP
rs985580629 426 dbSNP
rs142584236 427 dbSNP
rs1353601037 429 dbSNP
rs1401927889 432 dbSNP
rs1279327453 433 dbSNP
rs1006090146 437 dbSNP
rs550362452 444 dbSNP
rs1204055990 447 dbSNP
rs1016517016 448 dbSNP
rs182068302 465 dbSNP
rs115683085 466 dbSNP
rs1231446799 466 dbSNP
rs924230500 473 dbSNP
rs185088220 488 dbSNP
rs1281221121 490 dbSNP
rs1221045820 491 dbSNP
rs1312392407 496 dbSNP
rs1297606184 497 dbSNP
rs1208931684 498 dbSNP
rs1277752513 499 dbSNP
rs1002040561 502 dbSNP
rs775607885 506 dbSNP
rs1488949490 508 dbSNP
rs368024066 514 dbSNP
rs948347510 514 dbSNP
rs1044157395 520 dbSNP
rs906938163 522 dbSNP
rs1171289119 526 dbSNP
rs1478731192 532 dbSNP
rs1421398789 536 dbSNP
rs1262379029 540 dbSNP
rs960055233 545 dbSNP
rs1191800347 553 dbSNP
rs541332923 554 dbSNP
rs1474408046 563 dbSNP
rs1257810226 576 dbSNP
rs1198414292 578 dbSNP
rs1002746754 581 dbSNP
rs1259174286 581 dbSNP
rs561150528 584 dbSNP
rs1036806146 585 dbSNP
rs574712542 593 dbSNP
rs913520491 596 dbSNP
rs1026835663 598 dbSNP
rs1452269012 600 dbSNP
rs543635649 604 dbSNP
rs762649204 609 dbSNP
rs1173177265 612 dbSNP
rs563411988 613 dbSNP
rs189995520 619 dbSNP
rs978996897 620 dbSNP
rs1019731510 623 dbSNP
rs551937969 624 dbSNP
rs1184943925 625 dbSNP
rs1298953252 628 dbSNP
rs1200867642 630 dbSNP
rs942852799 632 dbSNP
rs183067434 638 dbSNP
rs1210998504 642 dbSNP
rs924094637 642 dbSNP
rs1429304723 648 dbSNP
rs922996709 653 dbSNP
rs958167071 654 dbSNP
rs1263701427 657 dbSNP
rs1390551030 660 dbSNP
rs933010449 661 dbSNP
rs1311770622 665 dbSNP
rs1448693262 672 dbSNP
rs58074751 673 dbSNP
rs1333807757 676 dbSNP
rs1328096807 683 dbSNP
rs1405941386 688 dbSNP
rs528043258 690 dbSNP
rs1160880046 691 dbSNP
rs916798023 696 dbSNP
rs1368661278 697 dbSNP
rs948446349 698 dbSNP
rs1180174804 703 dbSNP
rs1438184284 704 dbSNP
rs1232728340 706 dbSNP
rs1453768487 707 dbSNP
rs980170715 708 dbSNP
rs1047418163 717 dbSNP
rs1221784132 725 dbSNP
rs1354567080 734 dbSNP
rs1288390509 735 dbSNP
rs928426500 750 dbSNP
rs1348259627 756 dbSNP
rs1300786501 761 dbSNP
rs886069784 765 dbSNP
rs1474021065 773 dbSNP
rs1355488525 774 dbSNP
rs1186509062 779 dbSNP
rs938415860 781 dbSNP
rs1284747621 784 dbSNP
rs59591789 788 dbSNP
rs1398647478 792 dbSNP
rs1036711834 793 dbSNP
rs1173488406 811 dbSNP
rs1223620664 812 dbSNP
rs796862928 814 dbSNP
rs931110092 819 dbSNP
rs1199381894 825 dbSNP
rs1488656581 832 dbSNP
rs1265503645 835 dbSNP
rs937562978 845 dbSNP
rs1037596802 856 dbSNP
rs1446574607 859 dbSNP
rs1048308164 861 dbSNP
rs150959722 863 dbSNP
rs1346919404 864 dbSNP
rs1001358783 866 dbSNP
rs1393497939 868 dbSNP
rs1281265842 883 dbSNP
rs1222895758 884 dbSNP
rs1006932406 890 dbSNP
rs1299430746 892 dbSNP
rs1035777652 893 dbSNP
rs1020016613 903 dbSNP
rs1344191841 904 dbSNP
rs764004487 905 dbSNP
rs1416490602 906 dbSNP
rs1441822460 907 dbSNP
rs1427719620 908 dbSNP
rs901288065 910 dbSNP
rs371885127 913 dbSNP
rs1407291168 915 dbSNP
rs999626019 916 dbSNP
rs1485596799 925 dbSNP
rs188598670 926 dbSNP
rs1261082507 927 dbSNP
rs1010243849 937 dbSNP
rs1318463950 939 dbSNP
rs958197958 945 dbSNP
rs1020245476 946 dbSNP
rs111903160 947 dbSNP
rs1403458388 950 dbSNP
rs979436683 954 dbSNP
rs1440620315 958 dbSNP
rs550753235 966 dbSNP
rs1324343744 967 dbSNP
rs979819412 969 dbSNP
rs911463692 971 dbSNP
rs1169013814 980 dbSNP
rs570917374 984 dbSNP
rs964583045 994 dbSNP
rs1414704595 995 dbSNP
rs928302654 996 dbSNP
rs1442942752 999 dbSNP
rs976942512 1002 dbSNP
rs923047748 1004 dbSNP
rs1308118193 1010 dbSNP
rs1347838597 1019 dbSNP
rs1458088106 1038 dbSNP
rs1229551614 1039 dbSNP
rs1202437336 1042 dbSNP
rs1306403411 1046 dbSNP
rs370426154 1050 dbSNP
rs1229543446 1059 dbSNP
rs755013546 1063 dbSNP
rs1047492712 1065 dbSNP
rs1447950707 1069 dbSNP
rs553156600 1070 dbSNP
rs1296950239 1075 dbSNP
rs941694172 1076 dbSNP
rs1350985260 1079 dbSNP
rs1166916899 1082 dbSNP
rs1038047058 1085 dbSNP
rs116251719 1087 dbSNP
rs535827858 1092 dbSNP
rs1458066968 1093 dbSNP
rs1179454967 1099 dbSNP
rs1175282245 1101 dbSNP
rs937206994 1101 dbSNP
rs554947014 1102 dbSNP
rs889734463 1105 dbSNP
rs942601336 1107 dbSNP
rs1040940662 1109 dbSNP
rs895613848 1113 dbSNP
rs1240506389 1114 dbSNP
rs1356276314 1116 dbSNP
rs1305231482 1121 dbSNP
rs1391178857 1122 dbSNP
rs1010294703 1123 dbSNP
rs1368864788 1126 dbSNP
rs141286841 1133 dbSNP
rs781377437 1133 dbSNP
rs1403153114 1142 dbSNP
rs1020296333 1145 dbSNP
rs999490044 1152 dbSNP
rs1163427838 1153 dbSNP
rs1159462368 1158 dbSNP
rs574772380 1163 dbSNP
rs1031123394 1164 dbSNP
rs1156619555 1171 dbSNP
rs1418306279 1172 dbSNP
rs1425757802 1179 dbSNP
rs904550446 1192 dbSNP
rs1000181026 1194 dbSNP
rs1267623706 1196 dbSNP
rs1216719572 1197 dbSNP
rs143399677 1198 dbSNP
rs1258614245 1203 dbSNP
rs1238756900 1206 dbSNP
rs964317834 1207 dbSNP
rs1431296002 1209 dbSNP
rs976966379 1211 dbSNP
rs557121091 1213 dbSNP
rs760652394 1227 dbSNP
rs749917842 1228 dbSNP
rs1345451603 1247 dbSNP
rs1298818032 1252 dbSNP
rs764702536 1252 dbSNP
rs576936281 1254 dbSNP
rs1383006185 1255 dbSNP
rs1334046283 1264 dbSNP
rs972365156 1270 dbSNP
rs952446725 1271 dbSNP
rs545902071 1272 dbSNP
rs748256999 1275 dbSNP
rs375016316 1278 dbSNP
rs79968982 1287 dbSNP
rs911061158 1298 dbSNP
rs941732046 1298 dbSNP
rs11669523 1299 dbSNP
rs1193701613 1307 dbSNP
rs755664764 1309 dbSNP
rs528119623 1314 dbSNP
rs1393812037 1316 dbSNP
rs541422676 1317 dbSNP
rs1259197742 1320 dbSNP
rs1197837478 1324 dbSNP
rs1483777040 1327 dbSNP
rs1265327381 1330 dbSNP
rs973086277 1332 dbSNP
rs1041365424 1337 dbSNP
rs922534514 1341 dbSNP
rs1324801345 1342 dbSNP
rs935357148 1342 dbSNP
rs926918507 1343 dbSNP
rs1189677786 1344 dbSNP
rs1295122323 1345 dbSNP
rs562085964 1347 dbSNP
rs1052414452 1350 dbSNP
rs879713453 1362 dbSNP
rs1338376899 1366 dbSNP
rs1468065388 1370 dbSNP
rs765731212 1375 dbSNP
rs758853439 1377 dbSNP
rs1171351728 1379 dbSNP
rs1405197938 1379 dbSNP
rs893922630 1380 dbSNP
rs1474938360 1381 dbSNP
rs1423966320 1385 dbSNP
rs1244629138 1395 dbSNP
rs753263213 1397 dbSNP
rs1056954878 1398 dbSNP
rs1426426742 1400 dbSNP
rs895666292 1404 dbSNP
rs554604574 1407 dbSNP
rs113072092 1414 dbSNP
rs1041807518 1417 dbSNP
rs1167767129 1421 dbSNP
rs1198148567 1423 dbSNP
rs1393835828 1428 dbSNP
rs1337515946 1442 dbSNP
rs1045130441 1443 dbSNP
rs531120532 1446 dbSNP
rs10425237 1454 dbSNP
rs904602648 1455 dbSNP
rs1385205900 1457 dbSNP
rs1313213662 1467 dbSNP
rs1000637685 1470 dbSNP
rs73939649 1472 dbSNP
rs1381855757 1473 dbSNP
rs1329444511 1474 dbSNP
rs1334429179 1476 dbSNP
rs571038530 1476 dbSNP
rs1394259463 1477 dbSNP
rs1354228276 1478 dbSNP
rs1334489878 1484 dbSNP
rs1386686048 1485 dbSNP
rs1161324626 1486 dbSNP
rs1444391997 1488 dbSNP
rs1035715134 1491 dbSNP
rs778241189 1492 dbSNP
rs567632512 1495 dbSNP
rs758633856 1499 dbSNP
rs778205907 1500 dbSNP
rs1361741496 1507 dbSNP
rs1025252330 1512 dbSNP
rs747159416 1521 dbSNP
rs1354712545 1522 dbSNP
rs1029909320 1527 dbSNP
rs952354586 1528 dbSNP
rs1341125171 1531 dbSNP
rs984298489 1534 dbSNP
rs1333859659 1542 dbSNP
rs910937341 1547 dbSNP
rs1346886325 1548 dbSNP
rs951551100 1556 dbSNP
rs964231841 1567 dbSNP
rs982947597 1571 dbSNP
rs757522265 1578 dbSNP
rs533346539 1582 dbSNP
rs1423544434 1587 dbSNP
rs868389116 1590 dbSNP
rs1485352603 1594 dbSNP
rs1380532867 1603 dbSNP
rs1160613431 1611 dbSNP
rs867174019 1612 dbSNP
rs935221747 1614 dbSNP
rs1490858114 1615 dbSNP
rs1208894954 1617 dbSNP
rs781613896 1620 dbSNP
rs1221853680 1621 dbSNP
rs1488718965 1636 dbSNP
rs114644261 1645 dbSNP
rs745911670 1647 dbSNP
rs10404558 1649 dbSNP
rs1278879381 1654 dbSNP
rs1478458528 1655 dbSNP
rs747345556 1656 dbSNP
rs1224106092 1659 dbSNP
rs191704392 1663 dbSNP
rs1045564383 1666 dbSNP
rs770064737 1683 dbSNP
rs1371651488 1684 dbSNP
rs1319932228 1686 dbSNP
rs905269479 1687 dbSNP
rs992732880 1691 dbSNP
rs775553024 1693 dbSNP
rs1056618303 1700 dbSNP
rs76151738 1701 dbSNP
rs1198724891 1702 dbSNP
rs1041522965 1712 dbSNP
rs1478217467 1716 dbSNP
rs1244031992 1719 dbSNP
rs1214001001 1735 dbSNP
rs1432317562 1737 dbSNP
rs74798348 1747 dbSNP
rs1361060614 1748 dbSNP
rs537363052 1753 dbSNP
rs952387101 1755 dbSNP
rs556943431 1760 dbSNP
rs577004295 1761 dbSNP
rs963808687 1769 dbSNP
rs1040166792 1774 dbSNP
rs1471175744 1779 dbSNP
rs899862584 1783 dbSNP
rs998170460 1785 dbSNP
rs1051387280 1787 dbSNP
rs887350899 1790 dbSNP
rs1332537420 1792 dbSNP
rs1184868986 1794 dbSNP
rs1233722549 1795 dbSNP
rs956502010 1796 dbSNP
rs1462523323 1800 dbSNP
rs751735876 1816 dbSNP
rs1208779488 1825 dbSNP
rs1017106237 1826 dbSNP
rs1261140017 1830 dbSNP
rs963180030 1833 dbSNP
rs1308020859 1839 dbSNP
rs988058690 1845 dbSNP
rs1212328500 1846 dbSNP
rs1338292601 1849 dbSNP
rs1315367601 1854 dbSNP
rs1454888652 1857 dbSNP
rs545659783 1859 dbSNP
rs1486249477 1869 dbSNP
rs184044224 1870 dbSNP
rs188059080 1874 dbSNP
rs1356791478 1882 dbSNP
rs1168367626 1890 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' cgaggucAGAG-CUGCAAGGGCCCc 5'
                 ||||  ||  ||||||| 
Target 5' -------UCUCAAAC--UCCCGGGc 3'
 		1 - 16
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 388552.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' cgaggucAGAG-CUGCAAGGGCCCc 5'
                 ||||  ||  ||||||| 
Target 5' -------UCUCAAAC--UCCCGGGc 3'
 		1 - 16
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 388552.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065669. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000433642.2 | 3UTR | UCUCAAACUCCCGGGCUCAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000433642.2 | 3UTR | UCUCAAACUCCCGGGCUCAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1065669
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_8
Location of target site ENST00000433642.2 | 3UTR | UCUCAAACUCCCGGGCUCAAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
228 hsa-miR-1247-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT107246 PTGES2 prostaglandin E synthase 2 2 2
MIRT118004 BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 2 6
MIRT345983 BIRC5 baculoviral IAP repeat containing 5 2 4
MIRT369967 ZNF264 zinc finger protein 264 2 2
MIRT451350 ZNF573 zinc finger protein 573 2 4
MIRT451367 UQCR11 ubiquinol-cytochrome c reductase, complex III subunit XI 2 2
MIRT451450 ZNF556 zinc finger protein 556 2 4
MIRT451766 ZNF611 zinc finger protein 611 2 6
MIRT452065 ZNF585B zinc finger protein 585B 2 8
MIRT452346 TG thyroglobulin 2 2
MIRT452519 TFDP2 transcription factor Dp-2 2 6
MIRT452631 FAM162A family with sequence similarity 162 member A 2 2
MIRT452896 PSD4 pleckstrin and Sec7 domain containing 4 2 4
MIRT453263 PARP11 poly(ADP-ribose) polymerase family member 11 2 2
MIRT453567 RDH13 retinol dehydrogenase 13 2 2
MIRT453911 GABRR2 gamma-aminobutyric acid type A receptor rho2 subunit 2 4
MIRT454576 NT5DC3 5'-nucleotidase domain containing 3 2 2
MIRT454859 ACOT9 acyl-CoA thioesterase 9 2 4
MIRT455094 NMNAT1 nicotinamide nucleotide adenylyltransferase 1 2 2
MIRT455790 TAF8 TATA-box binding protein associated factor 8 2 2
MIRT455932 HECTD3 HECT domain E3 ubiquitin protein ligase 3 2 2
MIRT456213 LIX1L limb and CNS expressed 1 like 2 4
MIRT456238 LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase 2 6
MIRT456279 HRNR hornerin 2 2
MIRT456665 TIFA TRAF interacting protein with forkhead associated domain 2 2
MIRT457088 XPNPEP3 X-prolyl aminopeptidase 3 2 2
MIRT457322 DUSP19 dual specificity phosphatase 19 2 2
MIRT457695 ZNF587 zinc finger protein 587 2 4
MIRT458160 LYRM4 LYR motif containing 4 2 6
MIRT458465 SNX22 sorting nexin 22 2 8
MIRT458504 MARVELD2 MARVEL domain containing 2 2 2
MIRT458514 GSG2 histone H3 associated protein kinase 2 10
MIRT458645 SGPP2 sphingosine-1-phosphate phosphatase 2 2 2
MIRT458823 ZNF843 zinc finger protein 843 2 4
MIRT459156 NARF nuclear prelamin A recognition factor 2 2
MIRT459182 HSPA6 heat shock protein family A (Hsp70) member 6 2 4
MIRT459374 MPLKIP M-phase specific PLK1 interacting protein 2 6
MIRT459552 BTD biotinidase 2 2
MIRT459756 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT459860 SVOP SV2 related protein 2 8
MIRT460020 DTX3L deltex E3 ubiquitin ligase 3L 2 6
MIRT460233 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT460275 SLC26A2 solute carrier family 26 member 2 2 2
MIRT460461 NOM1 nucleolar protein with MIF4G domain 1 2 4
MIRT460540 TM4SF5 transmembrane 4 L six family member 5 2 2
MIRT460551 IFNAR1 interferon alpha and beta receptor subunit 1 2 6
MIRT460978 STK17B serine/threonine kinase 17b 2 2
MIRT461421 CTSL2 cathepsin V 1 2
MIRT461960 C3 complement C3 2 4
MIRT462529 DHODH dihydroorotate dehydrogenase (quinone) 2 6
MIRT462864 CYP51A1 cytochrome P450 family 51 subfamily A member 1 2 2
MIRT462917 ZNRF3 zinc and ring finger 3 2 2
MIRT463022 ZNF70 zinc finger protein 70 2 2
MIRT463074 ZNF639 zinc finger protein 639 2 2
MIRT463130 ZNF451 zinc finger protein 451 2 4
MIRT463627 YY1 YY1 transcription factor 2 2
MIRT467015 SSBP2 single stranded DNA binding protein 2 2 2
MIRT467127 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 2 8
MIRT468526 SERTAD2 SERTA domain containing 2 2 4
MIRT468584 SERBP1 SERPINE1 mRNA binding protein 1 2 6
MIRT469540 RBBP8 RB binding protein 8, endonuclease 2 2
MIRT469876 PURB purine rich element binding protein B 2 4
MIRT471577 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT472110 NME2 NME/NM23 nucleoside diphosphate kinase 2 2 2
MIRT472127 NME1-NME2 NME1-NME2 readthrough 2 2
MIRT472423 NCKAP1 NCK associated protein 1 2 2
MIRT472829 MTMR10 myotubularin related protein 10 2 4
MIRT473022 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT473408 MDM4 MDM4, p53 regulator 2 2
MIRT474122 LIPC lipase C, hepatic type 2 2
MIRT474927 KCTD20 potassium channel tetramerization domain containing 20 2 2
MIRT476807 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT478006 DNAL1 dynein axonemal light chain 1 2 2
MIRT479200 CLCN5 chloride voltage-gated channel 5 2 6
MIRT479671 CCSER2 coiled-coil serine rich protein 2 2 2
MIRT479917 CCDC117 coiled-coil domain containing 117 2 6
MIRT479977 CARD10 caspase recruitment domain family member 10 2 2
MIRT480731 BPTF bromodomain PHD finger transcription factor 2 6
MIRT481100 B3GALNT2 beta-1,3-N-acetylgalactosaminyltransferase 2 2 2
MIRT481160 AVL9 AVL9 cell migration associated 2 6
MIRT481393 ATG12 autophagy related 12 2 2
MIRT481433 ASB6 ankyrin repeat and SOCS box containing 6 2 2
MIRT482083 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT484667 HOXD3 homeobox D3 2 4
MIRT485940 ECSIT ECSIT signalling integrator 2 4
MIRT485950 BRSK1 BR serine/threonine kinase 1 2 2
MIRT487600 NKD2 naked cuticle homolog 2 2 4
MIRT487666 HPCAL1 hippocalcin like 1 2 4
MIRT489966 GNB2 G protein subunit beta 2 2 2
MIRT490332 ANK1 ankyrin 1 2 4
MIRT491314 LRFN1 leucine rich repeat and fibronectin type III domain containing 1 2 2
MIRT493193 MINK1 misshapen like kinase 1 2 4
MIRT493300 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT493816 FSCN1 fascin actin-bundling protein 1 2 2
MIRT496977 RPS6KA2 ribosomal protein S6 kinase A2 2 2
MIRT512229 ATXN3 ataxin 3 2 6
MIRT515141 ZNF799 zinc finger protein 799 2 4
MIRT516647 SMC5 structural maintenance of chromosomes 5 2 2
MIRT517952 TRIM59 tripartite motif containing 59 2 2
MIRT520971 SPPL2A signal peptide peptidase like 2A 2 4
MIRT521569 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT522918 KCNE3 potassium voltage-gated channel subfamily E regulatory subunit 3 2 2
MIRT532713 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT540809 SLC35F5 solute carrier family 35 member F5 2 2
MIRT550734 PMPCA peptidase, mitochondrial processing alpha subunit 2 4
MIRT551293 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 4
MIRT559740 ACOX1 acyl-CoA oxidase 1 2 2
MIRT564410 EMILIN2 elastin microfibril interfacer 2 2 2
MIRT565240 TRAF6 TNF receptor associated factor 6 2 2
MIRT568911 ATP6V1B1 ATPase H+ transporting V1 subunit B1 2 2
MIRT575232 Fut1 fucosyltransferase 1 2 2
MIRT576224 Srsf1 serine/arginine-rich splicing factor 1 2 2
MIRT607724 LIMS1 LIM zinc finger domain containing 1 2 2
MIRT608090 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT613920 POU3F1 POU class 3 homeobox 1 2 2
MIRT618520 SELPLG selectin P ligand 2 2
MIRT624703 AQR aquarius intron-binding spliceosomal factor 2 2
MIRT624770 AKR1D1 aldo-keto reductase family 1 member D1 2 2
MIRT625720 SPI1 Spi-1 proto-oncogene 2 2
MIRT629975 MRPL36 mitochondrial ribosomal protein L36 2 2
MIRT631356 ZFP82 ZFP82 zinc finger protein 2 2
MIRT631426 CDNF cerebral dopamine neurotrophic factor 2 2
MIRT631665 NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 2 2
MIRT631735 SF3B1 splicing factor 3b subunit 1 2 2
MIRT632334 TCEANC2 transcription elongation factor A N-terminal and central domain containing 2 2 2
MIRT632419 SLC30A5 solute carrier family 30 member 5 2 2
MIRT632531 PSMB2 proteasome subunit beta 2 2 2
MIRT633264 LDLR low density lipoprotein receptor 2 2
MIRT634327 SLC43A2 solute carrier family 43 member 2 2 2
MIRT634753 CRCP CGRP receptor component 2 2
MIRT635412 KIAA1614 KIAA1614 2 2
MIRT636281 RFFL ring finger and FYVE like domain containing E3 ubiquitin protein ligase 2 2
MIRT636291 RAD51L3-RFFL RAD51L3-RFFL readthrough 2 2
MIRT640265 FANCA Fanconi anemia complementation group A 2 2
MIRT641738 TXNL1 thioredoxin like 1 2 2
MIRT643276 ZNF566 zinc finger protein 566 2 2
MIRT643528 ERAP2 endoplasmic reticulum aminopeptidase 2 2 2
MIRT643555 C11orf70 chromosome 11 open reading frame 70 2 2
MIRT647027 NQO2 N-ribosyldihydronicotinamide:quinone reductase 2 2 2
MIRT647298 RBM43 RNA binding motif protein 43 2 2
MIRT648124 SEMA3E semaphorin 3E 2 4
MIRT648611 TPCN2 two pore segment channel 2 2 2
MIRT648717 IL10RB interleukin 10 receptor subunit beta 2 2
MIRT649425 CDC14B cell division cycle 14B 2 2
MIRT650029 DSG3 desmoglein 3 2 2
MIRT650281 TAS2R5 taste 2 receptor member 5 2 2
MIRT650529 CCDC77 coiled-coil domain containing 77 2 2
MIRT654240 RNF115 ring finger protein 115 2 2
MIRT657032 KCNJ6 potassium voltage-gated channel subfamily J member 6 2 2
MIRT658408 FAM212B family with sequence similarity 212 member B 2 2
MIRT659442 CNNM4 cyclin and CBS domain divalent metal cation transport mediator 4 2 2
MIRT661080 FFAR2 free fatty acid receptor 2 2 2
MIRT661529 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT661876 PDLIM5 PDZ and LIM domain 5 2 2
MIRT662100 ZNF419 zinc finger protein 419 2 2
MIRT662136 ZC3H8 zinc finger CCCH-type containing 8 2 2
MIRT663638 HM13 histocompatibility minor 13 2 2
MIRT663703 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663847 TRIM72 tripartite motif containing 72 2 2
MIRT664769 MESDC2 mesoderm development LRP chaperone 2 2
MIRT665481 VSTM4 V-set and transmembrane domain containing 4 2 2
MIRT666533 RNF157 ring finger protein 157 2 2
MIRT668107 GK5 glycerol kinase 5 (putative) 2 2
MIRT668984 CKAP4 cytoskeleton associated protein 4 2 4
MIRT669742 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 2
MIRT671010 MOB4 MOB family member 4, phocein 2 2
MIRT671583 SPIRE2 spire type actin nucleation factor 2 2 2
MIRT673261 INO80 INO80 complex subunit 2 2
MIRT673533 ADRBK2 G protein-coupled receptor kinase 3 2 2
MIRT674714 FAM73A mitoguardin 1 2 2
MIRT675205 ZNF554 zinc finger protein 554 2 2
MIRT676488 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 2
MIRT676705 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT676851 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT676855 RAB3B RAB3B, member RAS oncogene family 2 2
MIRT676915 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT677000 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT677188 PDE12 phosphodiesterase 12 2 2
MIRT677473 SLC7A11 solute carrier family 7 member 11 2 2
MIRT677562 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT677779 FKTN fukutin 2 2
MIRT677896 DCP1A decapping mRNA 1A 2 2
MIRT677996 GATC glutamyl-tRNA amidotransferase subunit C 2 2
MIRT678239 HMGB1 high mobility group box 1 2 4
MIRT678313 MCM8 minichromosome maintenance 8 homologous recombination repair factor 2 2
MIRT678437 PDE4C phosphodiesterase 4C 2 2
MIRT678480 RNF222 ring finger protein 222 2 2
MIRT678591 ZNF91 zinc finger protein 91 2 2
MIRT678863 SLC7A14 solute carrier family 7 member 14 2 2
MIRT679241 LRP10 LDL receptor related protein 10 2 2
MIRT679388 WDR92 WD repeat domain 92 2 2
MIRT679501 ZNF106 zinc finger protein 106 2 2
MIRT679581 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT679827 TMEM106B transmembrane protein 106B 2 2
MIRT679842 GPR75 G protein-coupled receptor 75 2 2
MIRT679860 ZFP30 ZFP30 zinc finger protein 2 2
MIRT680733 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT680922 STX2 syntaxin 2 2 2
MIRT680953 CEP104 centrosomal protein 104 2 2
MIRT681053 ZDBF2 zinc finger DBF-type containing 2 2 2
MIRT681967 TFCP2 transcription factor CP2 2 2
MIRT682010 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT682061 B4GALT7 beta-1,4-galactosyltransferase 7 2 4
MIRT682070 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT683356 SCARF1 scavenger receptor class F member 1 2 2
MIRT683699 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT684268 PRPF4 pre-mRNA processing factor 4 2 2
MIRT685500 MED16 mediator complex subunit 16 2 2
MIRT686876 SLC25A32 solute carrier family 25 member 32 2 2
MIRT690869 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 2 2
MIRT691139 HJURP Holliday junction recognition protein 2 2
MIRT691195 NIF3L1 NGG1 interacting factor 3 like 1 2 2
MIRT691780 SLC24A4 solute carrier family 24 member 4 2 2
MIRT692901 MPL MPL proto-oncogene, thrombopoietin receptor 2 2
MIRT694551 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT695421 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT695956 FANCM Fanconi anemia complementation group M 2 2
MIRT696615 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT700682 PPAP2B phospholipid phosphatase 3 2 2
MIRT701215 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT702196 LRRC58 leucine rich repeat containing 58 2 2
MIRT702837 HOOK3 hook microtubule tethering protein 3 2 2
MIRT703652 FAM60A SIN3-HDAC complex associated factor 2 2
MIRT705679 ANKRD40 ankyrin repeat domain 40 2 2
MIRT706650 SMIM19 small integral membrane protein 19 2 2
MIRT711087 NEUROD2 neuronal differentiation 2 2 2
MIRT724961 PTK6 protein tyrosine kinase 6 2 2
MIRT735597 BCL6 B-cell CLL/lymphoma 6 1 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-1247 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-1247 Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer cell line (A2780CIS)
hsa-mir-1247 Sorafenib 216239 NSC747971 approved sensitive High Hepatocellular Carcinoma tissue
hsa-mir-1247 Cisplatin 5460033 NSC119875 approved sensitive cell line (CIS)
hsa-mir-1247 Androstenedione 6128 NSC9563 resistant cell line (MCF-7)
hsa-mir-1247 Androstenedione+Anastrozole resistant cell line (MCF-7)
hsa-mir-1247 Androstenedione+Letrozole resistant cell line (MCF-7)
hsa-mir-1247 Fluorouracil 3385 NSC19893 approved resistant cell line (OE19)
hsa-mir-1247 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-mir-1247 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-1247-3p Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (SW1990)
hsa-miR-1247-3p Gefitinib 123631 NSC715055 approved resistant High Non-Small Cell Lung Cancer cell line (PC-9)
hsa-miR-1247-3p Gefitinib 123631 NSC715055 approved sensitive High Non-Small Cell Lung Cancer cell line (PC-9)
hsa-miR-1247-3p Yuanhuadine 6440572 resistant High Non-Small Cell Lung Cancer cell line (PC-9)
hsa-miR-1247-3p Cisplatin 5460033 NSC119875 approved sensitive High Non-Small Cell Lung Cancer cell line (A549, HCC827)
hsa-miR-1247-3p Gefitinib 123631 NSC715055 approved sensitive High Non-Small Cell Lung Cancer cell line (A549, HCC827)
hsa-miR-1247-3p Oxaliplatin 6857599 NSC266046 approved sensitive Low Colorectal Cancer cell line (HCT-116)
hsa-miR-1247-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-1247-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-1247-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-1247-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1247-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-1247-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (100 ng/ml)
hsa-miR-1247-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-1247-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

Error report submission