miRTarBase - #MIRT120933


—
pre-miRNA Information
pre-miRNA hsa-mir-3529   
Genomic Coordinates chr15: 88611847 - 88611924
Description Homo sapiens miR-3529 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3529-5p
Sequence 10| AGGUAGACUGGGAUUUGUUGUU |31
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs747160976 1 dbSNP
rs777738449 2 dbSNP
rs1421978871 4 dbSNP
rs1167726772 6 dbSNP
rs1355306872 6 dbSNP
rs1286285953 7 dbSNP
rs1233166293 8 dbSNP
rs772151253 9 dbSNP
rs1204890571 13 dbSNP
rs1250455629 18 dbSNP
rs748388180 19 dbSNP
rs1303070972 21 dbSNP
Putative Targets

Gene Information
Gene Symbol PDE12   
Synonyms 2'-PDE, 2-PDE
Description phosphodiesterase 12
Transcript NM_177966   
Expression
Putative miRNA Targets on PDE12
3'UTR of PDE12
(miRNA target sites are highlighted)		 
>PDE12|NM_177966|3'UTR
   1 ATGTGTGTTTAATGGAATTGAAGTCTGAAAAGGAAGTAGTTATTTTAGCAGAAAATTTAATATGAATCAAAGCTTATATG
  81 TAAACTTCAAGGAGGAATGGTAAAATGTTCAGCCCTCCTAGTTATGTTCCTGATGTCTTCGTTATGAAACTGTTGATGTT
 161 TGCATCATACATCTTCTCTTTCCTTGTTTTCCTCTACAATTGGAGGAGAAACAAATATATTTCTTACTAGCAAAATAGAA
 241 AATTGAATTATTTTTCTCCAAATTGAGACTCTCAGAAAAGGAAGATTGAATTAGCGTGTTTTTTGTTTGTTTGTTTTTGT
 321 TTTTGTTTTTGTTTTTTTGAGATGGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAATGGCACAATCTCGGCTCACTGC
 401 AACCTCCGCCCCCTGGGTTTAAGCGATTCTCCTGCCTCAGCTTCCCGAGTAGCTGGGATTACAGGCGTGCGCCAACATGT
 481 CTGGCTAATTTTTGTATTTTTAGTAGAAATGGGGTTTCGCCACGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTG
 561 ATCCACCCACCTCGGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACCGCACCCGGCCCTTGTGTACATTTTTATAA
 641 GAGAATTTTTTTAGCTAGGAGTTCAGAATTTTTAAAGTACCATTTGAATGATCTTAATTTTTCTTTCATGACAACACATT
 721 CCAAAATGAATCATGCTTATGTACTAAGAGGGAAAATGTATTTAAGTTAAGGGTGAGAGACTTAAGTTATAGGTGACCTT
 801 AGAGACCTAAGGTGAGAGACTTGACACATGGAAGGAGTAACATTAGGGTCTACCTCTACCTCAATTTAGTTAGCGATTTA
 881 CTACAATTTCAGAGCTTTAACAAAAGATAAAAATAAATCGTCACCAATTGTTATTGCTTCTCATCTTTCATTTTTCAATG
 961 AACAAGTAAGGTATTTTCATTCTTATTTTTAGGATTTTAGTTTTTAGTGTATGGTACAAATGAACACAGTTTATATTCTA
1041 ATTCTTACTGCAGCTCATTTTAATTTTTAGGATGCAAGCACAATTTAGTATTCAAAGTGAGTAGCAACATATTCAACTTG
1121 ATCCCATTGTCTTCAGTTACTCTTGCCCATGAAAAATGTTCATAAATGAACAGGGTATTTGACCATATGATATTAGAAAA
1201 TACAGCACATTACTTTATGAGAAACTACCTACTGATATGGGCTTGAAATTTTGGATGAATCATTGAGCATTTCTACACTA
1281 GAAGTAATTTCAAAATTGTTGGTTTTTATAAACAGGAAAAAGGTTGAGTAGTGGGACTTTTAAGCATCTCTGAAATAAAA
1361 AACTTCTTTTTACAGACAAGCATTATAGTTTGAGTTACAGACAACAGTGTGTATATATGTAATATATATATAGTAAAATG
1441 AAATTTAAATATGAAGCCAAACTTTTTAAAATTAGAAACTACAAATGGTTATACTGATTAGTGTCTAGCCTAGAGTGGTA
1521 ACCATGCTTTACTAATTCAGTTATGAAATACATTATTTATAATGCATTAGCTGTATTAGCTGTTGCTTTTTTGATGTTCA
1601 GGATAACTATGTTATCTCATTTCTGCATTTAATTAATAGCTCGAGTATTAAAAGCCCACTCCCTTCAAGAAAAGCTTTGA
1681 TTTTCCCCAGTCATGAAAGCCCTTGTTTCAAATTCTTTAATCTCTGAACCTAGTATCATAAGAATTTCCTCTTTTGATAA
1761 CATCTGTACTTTCATATTCTGCTCACTATCAAATGTATTGTTAACACTTAGTAAGTTTGAAAATGAAGGGGTTTTATCTG
1841 CATTTGACATTGAACCTTGAAGTACTTTAAGTACTCCAAGGGGAAAATTAAAGTGGAAGTTTCTTCGGATCTTGTTTAGA
1921 AAAAACTATAAATAAAAAATTGATGCTACCAAATTGTGCCTTCCTAAATAACATTTTTGAGAGCATTTTAACAGCAGTTT
2001 ACAAATATGTAAATAATAGATTAAAACCAAATCTTGATTCTCTTGTGAATTTTTTTTTCATTTTAAAAATATGTTTTTGG
2081 GCTGTTTTCAAAGAAAGATGTTGATAGAACCCTTAGAGTGACTTGGGAGAAAACAAAGTGTCACATCAAAAAGTTGAGAA
2161 ACATTTTGAAAGAAAAAATTCGAACATGCCCATGAAAAAAGCATACAGCTTCCACATTAACACTGGCTAGATTAAACTCT
2241 AGTCAGAAAAACTCAGCACTTAACAGACATTCCATGTCCTATATCCTTAATTTTGATGTTTTCTGACTAAACAATATACT
2321 CAGATTGTATACAGGCATTTCACATTATTAGGACATGGAATGTTATTGTGAAGTGCCATATACTGTGATCAAATCTCCAG
2401 TATACGGATACGTTAAAATGATTGGAGTCCAAAGGTAGGGAACACTAAGAAAATGTATAAATAGCATACACATTTCTTTG
2481 TACTCATGAGTTAGAATGCAGTGTTATTCAGAAATGTCTGTTTAAAGCACCTATGTGATTGCATTTTTCTATTACATTTG
2561 GATTTTTTAGTACATTTAATTTTAAGAAAACATGGGAAATCTAGCGACTTTCTATGGTAAACCACATTTTATAATGTCAC
2641 AAGTTCTTGCTATAGGAATTAACATTCTAGAATTTTATATTGATTATAAAAGAGTATTTCAGAACATATTATTCTGTTAA
2721 AATGAACTCTTGCACAGTTGCCGCTACAGCAAATGTGTCTGCCAATAATCAAAATTCATGAGCAAACAATCGTTTCTGGC
2801 TGTAATGTATGTTCTTTTTGAAATTCTGTATGCTAAAATCAGTTGTTTCAAAATTTCAAGAATTCCACTGAGTAGTGATT
2881 TTTCTGAGTACTAAGCTATGATCTCATCAGAATGTGCTGGTTTCAGTCTGGAGATAGATTTCTGAGGAGCCTAATACAAG
2961 GGAGAGAATGTCCAAAGAACACTACTGTGGAAAGTTCTTACGATGGAAATTGACATCTTTTGTATCTCATTCTCCAGCCG
3041 TGAAATAAAGGCAGAGGTTCCCTGCAAACTAGTTTGGTTGGGATAAATCCAATATTTATATATAATGAAAAATAAAAGTT
3121 TGCATTATTAGTTTATCACAAGACCCATGTGACAACTCAGAAAATATTCTCAGCATAATTTTTTTAAGAGATAGAGTCTC
3201 ACTGTTACCCAGGCTGGAGTGCAGTGGTGCAGTCATAACTTACTACAGCCTCAAACTGCGGGGCTCAAATGATCCTCCTG
3281 CCTCAGCGTCCCAAGTAGTTGAGATTACAAGCCCAACCTTCCATAACTGAAAACTAACTTTCTTTTTTTCTTTTTTTATT
3361 ATTATACTTTAAGTTCTAGTGTACATGTGCCCAACGTGCAGATTTGTTACATAGGTATACATGTGCCATGTTGGTTTGCT
3441 GCACCCGTTAACTCGTCATTTACATTAGGTATTTCTCCTAATGCTATCCCTCCCCCAGCCCTGAAAATGAATTTTTTAAA
3521 CACAAATAAAAAATATTTCAGTGAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uugUUGUU-UAGGGUCAGAUGGa 5'
             |::|| ||:  :||||||| 
Target 5' aggAGTAACATTAGGGTCTACCt 3'
 833 - 855 155.00 -15.30
2 
miRNA  3' uuGUUGUUUAGGGUCAGAUGGa 5'
            ||:||||| :  ||||:|| 
Target 5' taCAGCAAATGT--GTCTGCCa 3'
 2745 - 2764 148.00 -17.10
3 
miRNA  3' uugUUGUUUAG-GGUCAGAUGga 5'
             | |||||| ||||| |||  
Target 5' gtgATCAAATCTCCAGTATACgg 3'
 2385 - 2407 127.00 -14.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31598104 5 COSMIC
COSN30168333 61 COSMIC
COSN31562508 85 COSMIC
COSN26095969 96 COSMIC
COSN8489455 111 COSMIC
COSN32062280 120 COSMIC
COSN30153819 133 COSMIC
COSN31560388 136 COSMIC
COSN31522570 773 COSMIC
COSN31549466 852 COSMIC
COSN31523910 1077 COSMIC
COSN31596561 1107 COSMIC
COSN19233154 1121 COSMIC
COSN30173658 1433 COSMIC
COSN25527382 1805 COSMIC
COSN6771319 2022 COSMIC
COSN17503527 2104 COSMIC
COSN7702296 2133 COSMIC
COSN7702297 2134 COSMIC
COSN24927425 2662 COSMIC
COSN1954425 2953 COSMIC
COSN22711500 3002 COSMIC
COSN24902173 3230 COSMIC
COSN27090780 3774 COSMIC
COSN26846324 4601 COSMIC
COSN17827092 4806 COSMIC
COSN19336852 4866 COSMIC
COSN27719702 4999 COSMIC
COSN6771320 5048 COSMIC
COSN32043320 5169 COSMIC
COSN7702298 5333 COSMIC
COSN1954426 5380 COSMIC
COSN26267387 5541 COSMIC
COSN28255932 5810 COSMIC
COSN6771321 5879 COSMIC
COSN23461952 6007 COSMIC
COSN23460783 6025 COSMIC
COSN29208620 6305 COSMIC
COSN8366860 6509 COSMIC
COSN17539660 6635 COSMIC
COSN27160275 6702 COSMIC
rs7618684 263 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs758165500 4 dbSNP
rs1350948945 6 dbSNP
rs1188532014 12 dbSNP
rs955545931 13 dbSNP
rs1448339309 15 dbSNP
rs748322045 17 dbSNP
rs369285340 18 dbSNP
rs1449850844 19 dbSNP
rs773222250 21 dbSNP
rs760783772 22 dbSNP
rs1169105021 30 dbSNP
rs372827459 33 dbSNP
rs1265928165 36 dbSNP
rs1204609005 41 dbSNP
rs1340127278 59 dbSNP
rs1208710757 63 dbSNP
rs562647604 66 dbSNP
rs575794735 73 dbSNP
rs1181961066 75 dbSNP
rs747504902 76 dbSNP
rs1030564907 77 dbSNP
rs1183893526 87 dbSNP
rs1412515745 92 dbSNP
rs1432402569 108 dbSNP
rs544821195 111 dbSNP
rs148742642 115 dbSNP
rs1428555070 116 dbSNP
rs17058361 126 dbSNP
rs1170124506 127 dbSNP
rs374989565 133 dbSNP
rs780816592 137 dbSNP
rs375200919 142 dbSNP
rs1376696018 161 dbSNP
rs990550507 169 dbSNP
rs1434682882 172 dbSNP
rs1268042390 173 dbSNP
rs1181296818 174 dbSNP
rs1297729050 175 dbSNP
rs1045551117 184 dbSNP
rs866596765 195 dbSNP
rs916306020 198 dbSNP
rs771996000 200 dbSNP
rs1254476973 201 dbSNP
rs1368748383 207 dbSNP
rs141489470 219 dbSNP
rs1046076960 224 dbSNP
rs1289202729 228 dbSNP
rs1348109436 236 dbSNP
rs1345057174 240 dbSNP
rs1309372043 245 dbSNP
rs778201357 248 dbSNP
rs1004576456 255 dbSNP
rs1038032845 262 dbSNP
rs7618684 263 dbSNP
rs996588367 265 dbSNP
rs1028465030 269 dbSNP
rs935213619 271 dbSNP
rs1471542566 273 dbSNP
rs1253840657 276 dbSNP
rs1182703894 278 dbSNP
rs1441899591 287 dbSNP
rs955120377 289 dbSNP
rs766435276 294 dbSNP
rs776853522 295 dbSNP
rs529715446 297 dbSNP
rs980123176 299 dbSNP
rs141300932 302 dbSNP
rs925290057 302 dbSNP
rs1039159022 304 dbSNP
rs752375915 310 dbSNP
rs765179643 310 dbSNP
rs959612611 310 dbSNP
rs990849996 310 dbSNP
rs1455437611 314 dbSNP
rs549859645 314 dbSNP
rs1206611027 316 dbSNP
rs1414163008 320 dbSNP
rs917967113 322 dbSNP
rs1472511382 324 dbSNP
rs1366753414 325 dbSNP
rs1452551889 331 dbSNP
rs150853169 335 dbSNP
rs1461972588 346 dbSNP
rs1247609915 362 dbSNP
rs981237651 372 dbSNP
rs1466520236 376 dbSNP
rs538414065 378 dbSNP
rs1030258974 383 dbSNP
rs1228189236 385 dbSNP
rs1355082081 386 dbSNP
rs1189269756 391 dbSNP
rs1426976075 392 dbSNP
rs552031796 397 dbSNP
rs532901949 407 dbSNP
rs753060450 408 dbSNP
rs1296397713 409 dbSNP
rs571834364 409 dbSNP
rs950986193 411 dbSNP
rs1390475423 412 dbSNP
rs1005052406 415 dbSNP
rs1388460687 416 dbSNP
rs1431717492 425 dbSNP
rs1318926443 426 dbSNP
rs1388457306 427 dbSNP
rs1165112302 428 dbSNP
rs1016851909 432 dbSNP
rs1389848374 437 dbSNP
rs963611054 441 dbSNP
rs59592393 444 dbSNP
rs1038714008 446 dbSNP
rs758672373 447 dbSNP
rs534551274 448 dbSNP
rs1368746546 451 dbSNP
rs1224143153 453 dbSNP
rs1214560786 459 dbSNP
rs1296066526 466 dbSNP
rs1344858534 467 dbSNP
rs1979074 468 dbSNP
rs970451374 471 dbSNP
rs1435455232 472 dbSNP
rs144212569 479 dbSNP
rs923564584 482 dbSNP
rs935246351 484 dbSNP
rs1425397881 497 dbSNP
rs1369956360 504 dbSNP
rs192798402 519 dbSNP
rs915141107 520 dbSNP
rs942573209 524 dbSNP
rs556207572 525 dbSNP
rs1477235161 534 dbSNP
rs902706535 545 dbSNP
rs1218882221 546 dbSNP
rs1001059860 548 dbSNP
rs1032978272 553 dbSNP
rs576041338 554 dbSNP
rs900608816 567 dbSNP
rs1202380074 568 dbSNP
rs755741714 571 dbSNP
rs566577608 574 dbSNP
rs1218488211 580 dbSNP
rs1246120086 586 dbSNP
rs1285121770 592 dbSNP
rs991190956 593 dbSNP
rs886407666 602 dbSNP
rs1306314838 603 dbSNP
rs1411712073 604 dbSNP
rs1004831400 606 dbSNP
rs1175551028 612 dbSNP
rs544787037 613 dbSNP
rs1016553448 614 dbSNP
rs1427646815 618 dbSNP
rs1177813628 619 dbSNP
rs899392625 629 dbSNP
rs1413127314 632 dbSNP
rs1250208927 638 dbSNP
rs565125728 644 dbSNP
rs1208909469 646 dbSNP
rs1233114767 646 dbSNP
rs748894438 657 dbSNP
rs1440518465 662 dbSNP
rs146506134 665 dbSNP
rs1223877848 674 dbSNP
rs1167161588 679 dbSNP
rs939823627 689 dbSNP
rs1225548332 693 dbSNP
rs1374059731 704 dbSNP
rs1302515291 709 dbSNP
rs541272922 713 dbSNP
rs1408543331 729 dbSNP
rs543059604 735 dbSNP
rs1457039609 747 dbSNP
rs1318913191 749 dbSNP
rs1410473055 762 dbSNP
rs1368006411 765 dbSNP
rs1420357980 778 dbSNP
rs561034467 781 dbSNP
rs970469575 782 dbSNP
rs1482101481 803 dbSNP
rs932626293 807 dbSNP
rs139987987 817 dbSNP
rs890826224 822 dbSNP
rs549824463 827 dbSNP
rs1317614619 829 dbSNP
rs1312157475 831 dbSNP
rs1226646671 842 dbSNP
rs943753244 843 dbSNP
rs1315978073 847 dbSNP
rs1355029394 852 dbSNP
rs1434844789 858 dbSNP
rs1386823349 873 dbSNP
rs1226312066 875 dbSNP
rs1291594802 891 dbSNP
rs1321873760 903 dbSNP
rs1207911588 915 dbSNP
rs1042137277 917 dbSNP
rs902274316 920 dbSNP
rs184376849 921 dbSNP
rs1183745017 925 dbSNP
rs1448672525 927 dbSNP
rs1032515230 928 dbSNP
rs1188020218 949 dbSNP
rs895383619 951 dbSNP
rs377626435 952 dbSNP
rs1219540991 958 dbSNP
rs867369447 960 dbSNP
rs748024587 961 dbSNP
rs1237037085 971 dbSNP
rs35237962 974 dbSNP
rs970726623 978 dbSNP
rs572614602 1001 dbSNP
rs983432684 1007 dbSNP
rs1383098881 1026 dbSNP
rs1162909447 1028 dbSNP
rs375531685 1032 dbSNP
rs942585039 1039 dbSNP
rs963501216 1051 dbSNP
rs1414844024 1080 dbSNP
rs975290294 1084 dbSNP
rs1456871369 1091 dbSNP
rs974273214 1098 dbSNP
rs571858051 1100 dbSNP
rs933414249 1113 dbSNP
rs1051831032 1116 dbSNP
rs773198728 1127 dbSNP
rs886520572 1131 dbSNP
rs761710371 1132 dbSNP
rs1428882498 1149 dbSNP
rs534135037 1151 dbSNP
rs1038092602 1157 dbSNP
rs746892988 1159 dbSNP
rs1189331070 1169 dbSNP
rs1012875849 1175 dbSNP
rs561763084 1195 dbSNP
rs912501301 1204 dbSNP
rs1445179778 1206 dbSNP
rs1340358245 1217 dbSNP
rs778520158 1221 dbSNP
rs1228691512 1223 dbSNP
rs1311921763 1266 dbSNP
rs943658499 1271 dbSNP
rs1042086094 1276 dbSNP
rs1003713696 1278 dbSNP
rs1355721631 1279 dbSNP
rs936474665 1299 dbSNP
rs1227364027 1312 dbSNP
rs1169228234 1316 dbSNP
rs1462309502 1327 dbSNP
rs1030779557 1328 dbSNP
rs956430691 1330 dbSNP
rs1481406322 1336 dbSNP
rs1429873549 1340 dbSNP
rs1181637682 1344 dbSNP
rs879155037 1364 dbSNP
rs1022356125 1374 dbSNP
rs963995518 1379 dbSNP
rs1252949961 1384 dbSNP
rs895343291 1398 dbSNP
rs1277839965 1408 dbSNP
rs1254673799 1410 dbSNP
rs1440590703 1413 dbSNP
rs1225698440 1418 dbSNP
rs1012432605 1422 dbSNP
rs1288254801 1422 dbSNP
rs775351640 1422 dbSNP
rs777253792 1422 dbSNP
rs771003720 1440 dbSNP
rs1238107900 1453 dbSNP
rs1333410140 1468 dbSNP
rs1330512268 1481 dbSNP
rs548031462 1486 dbSNP
rs552747169 1498 dbSNP
rs1391561274 1502 dbSNP
rs1401026885 1506 dbSNP
rs767404532 1513 dbSNP
rs143375472 1517 dbSNP
rs906806984 1521 dbSNP
rs1429979996 1522 dbSNP
rs187717911 1525 dbSNP
rs1180278392 1546 dbSNP
rs1158262975 1553 dbSNP
rs1468674290 1556 dbSNP
rs1365556514 1566 dbSNP
rs1414723395 1574 dbSNP
rs1473129499 1576 dbSNP
rs370297658 1585 dbSNP
rs1241522013 1586 dbSNP
rs1206030036 1594 dbSNP
rs1172289412 1602 dbSNP
rs1461999840 1608 dbSNP
rs933866351 1609 dbSNP
rs1207342088 1612 dbSNP
rs1347949724 1623 dbSNP
rs1004805139 1641 dbSNP
rs1400729561 1644 dbSNP
rs982559407 1646 dbSNP
rs963787920 1649 dbSNP
rs994960717 1652 dbSNP
rs145587463 1657 dbSNP
rs940741213 1658 dbSNP
rs1159286060 1662 dbSNP
rs1457457942 1670 dbSNP
rs1383630532 1675 dbSNP
rs3172345 1685 dbSNP
rs1351881013 1688 dbSNP
rs1037724610 1689 dbSNP
rs759700435 1704 dbSNP
rs1239545090 1720 dbSNP
rs538793197 1723 dbSNP
rs1205267828 1730 dbSNP
rs1358037383 1731 dbSNP
rs948074528 1734 dbSNP
rs965293658 1735 dbSNP
rs977752386 1735 dbSNP
rs923663830 1738 dbSNP
rs1045382819 1739 dbSNP
rs1220840627 1749 dbSNP
rs906768812 1757 dbSNP
rs1328186323 1762 dbSNP
rs1318819478 1766 dbSNP
rs1404844376 1767 dbSNP
rs1003743142 1778 dbSNP
rs916332145 1785 dbSNP
rs1425589548 1787 dbSNP
rs1389749799 1796 dbSNP
rs112151117 1797 dbSNP
rs1046556232 1801 dbSNP
rs1243216266 1811 dbSNP
rs892234478 1815 dbSNP
rs1445363462 1816 dbSNP
rs1011031828 1818 dbSNP
rs906754641 1832 dbSNP
rs1254246823 1839 dbSNP
rs1021968403 1840 dbSNP
rs1224026482 1844 dbSNP
rs1005129521 1866 dbSNP
rs765549388 1867 dbSNP
rs996522850 1880 dbSNP
rs192365019 1904 dbSNP
rs759477671 1907 dbSNP
rs184784715 1908 dbSNP
rs1305085618 1920 dbSNP
rs373073636 1929 dbSNP
rs1370258028 1932 dbSNP
rs889214783 1945 dbSNP
rs1412009480 1946 dbSNP
rs376719100 1966 dbSNP
rs1420602753 1970 dbSNP
rs1390038333 1992 dbSNP
rs1428546871 1994 dbSNP
rs1006691040 2011 dbSNP
rs763445198 2014 dbSNP
rs1019499414 2016 dbSNP
rs1490352242 2020 dbSNP
rs1201947477 2023 dbSNP
rs962161617 2024 dbSNP
rs764542535 2045 dbSNP
rs554820354 2046 dbSNP
rs965282327 2050 dbSNP
rs978061858 2050 dbSNP
rs188763550 2053 dbSNP
rs1322701177 2059 dbSNP
rs1329128201 2060 dbSNP
rs948075295 2061 dbSNP
rs1372623157 2062 dbSNP
rs574814137 2073 dbSNP
rs1278022994 2081 dbSNP
rs757768688 2082 dbSNP
rs1444582527 2085 dbSNP
rs1031065165 2090 dbSNP
rs957702131 2093 dbSNP
rs989564535 2095 dbSNP
rs1408951941 2097 dbSNP
rs916297064 2098 dbSNP
rs1045074918 2099 dbSNP
rs1480492149 2101 dbSNP
rs1406559825 2102 dbSNP
rs1174940295 2131 dbSNP
rs1470986466 2136 dbSNP
rs1233084670 2139 dbSNP
rs928215021 2150 dbSNP
rs1341288666 2164 dbSNP
rs1202871541 2169 dbSNP
rs1226313977 2182 dbSNP
rs939560683 2183 dbSNP
rs1264940811 2190 dbSNP
rs1276801445 2193 dbSNP
rs1204164872 2197 dbSNP
rs1316441511 2210 dbSNP
rs112095108 2232 dbSNP
rs1052608271 2238 dbSNP
rs1209434095 2247 dbSNP
rs1374421056 2257 dbSNP
rs143474439 2265 dbSNP
rs1011065785 2266 dbSNP
rs181580641 2269 dbSNP
rs1199946049 2271 dbSNP
rs1036593256 2276 dbSNP
rs899560331 2277 dbSNP
rs185340574 2285 dbSNP
rs1408269289 2291 dbSNP
rs1182536555 2303 dbSNP
rs1442564333 2306 dbSNP
rs753336089 2314 dbSNP
rs930629320 2318 dbSNP
rs955309130 2337 dbSNP
rs1004045227 2339 dbSNP
rs1247986970 2348 dbSNP
rs1015503792 2351 dbSNP
rs1183934899 2356 dbSNP
rs1485528928 2357 dbSNP
rs559672053 2367 dbSNP
rs1218050195 2368 dbSNP
rs1317536522 2370 dbSNP
rs973914700 2376 dbSNP
rs778666146 2377 dbSNP
rs1361822732 2380 dbSNP
rs1316230342 2382 dbSNP
rs1019443756 2386 dbSNP
rs1360570716 2398 dbSNP
rs189746875 2399 dbSNP
rs559193999 2404 dbSNP
rs62260500 2406 dbSNP
rs1030886738 2407 dbSNP
rs958203145 2412 dbSNP
rs758205348 2413 dbSNP
rs989121419 2415 dbSNP
rs1388299105 2419 dbSNP
rs980787932 2423 dbSNP
rs1326286289 2428 dbSNP
rs1364399870 2438 dbSNP
rs58250434 2439 dbSNP
rs56394082 2442 dbSNP
rs547698718 2445 dbSNP
rs1432779967 2446 dbSNP
rs1299965232 2460 dbSNP
rs551574847 2469 dbSNP
rs1220324129 2472 dbSNP
rs746980537 2486 dbSNP
rs567600948 2488 dbSNP
rs981851840 2494 dbSNP
rs1244084028 2515 dbSNP
rs1361935897 2524 dbSNP
rs79348290 2533 dbSNP
rs1227157189 2534 dbSNP
rs1306067408 2535 dbSNP
rs1358691415 2536 dbSNP
rs113214250 2545 dbSNP
rs914154147 2547 dbSNP
rs946896650 2550 dbSNP
rs570862146 2563 dbSNP
rs1043887343 2565 dbSNP
rs899593815 2570 dbSNP
rs1402533825 2574 dbSNP
rs57696722 2595 dbSNP
rs920819828 2606 dbSNP
rs1371091508 2612 dbSNP
rs150963678 2615 dbSNP
rs1478136253 2616 dbSNP
rs890827505 2617 dbSNP
rs1428502489 2623 dbSNP
rs1197442432 2636 dbSNP
rs1490841806 2647 dbSNP
rs1269884971 2653 dbSNP
rs141926042 2662 dbSNP
rs1479879392 2668 dbSNP
rs889151059 2670 dbSNP
rs558974695 2680 dbSNP
rs898399409 2681 dbSNP
rs1323513414 2688 dbSNP
rs1366381885 2691 dbSNP
rs1221171405 2692 dbSNP
rs1346796903 2693 dbSNP
rs1301584004 2696 dbSNP
rs1390504166 2713 dbSNP
rs995762862 2723 dbSNP
rs1299727502 2724 dbSNP
rs181401990 2729 dbSNP
rs1465943688 2730 dbSNP
rs1405267843 2740 dbSNP
rs1174108171 2741 dbSNP
rs534794676 2742 dbSNP
rs1378233273 2743 dbSNP
rs1022776130 2744 dbSNP
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rs753976694 6267 dbSNP
rs1014444785 6269 dbSNP
rs773410849 6272 dbSNP
rs144939226 6276 dbSNP
rs1323329366 6279 dbSNP
rs982980678 6282 dbSNP
rs529050607 6285 dbSNP
rs962996390 6296 dbSNP
rs1275013305 6314 dbSNP
rs1193625041 6319 dbSNP
rs539783291 6330 dbSNP
rs921293216 6339 dbSNP
rs934069920 6349 dbSNP
rs28414060 6352 dbSNP
rs28417332 6353 dbSNP
rs374081074 6354 dbSNP
rs1272350156 6358 dbSNP
rs1194353619 6363 dbSNP
rs1340296114 6365 dbSNP
rs914002065 6378 dbSNP
rs1047664845 6389 dbSNP
rs887679796 6396 dbSNP
rs142094291 6412 dbSNP
rs750885485 6416 dbSNP
rs1417335978 6428 dbSNP
rs562425579 6431 dbSNP
rs1327582800 6444 dbSNP
rs1407923902 6444 dbSNP
rs1054944609 6448 dbSNP
rs1168298061 6451 dbSNP
rs187737523 6458 dbSNP
rs144198713 6463 dbSNP
rs894122398 6466 dbSNP
rs78536498 6471 dbSNP
rs1024442371 6472 dbSNP
rs116425536 6479 dbSNP
rs1004788012 6490 dbSNP
rs1342909619 6507 dbSNP
rs1432218665 6509 dbSNP
rs1017151366 6514 dbSNP
rs1298438808 6521 dbSNP
rs1346212010 6525 dbSNP
rs777092389 6545 dbSNP
rs367987157 6546 dbSNP
rs1278452775 6560 dbSNP
rs957588997 6567 dbSNP
rs1337187731 6576 dbSNP
rs990296038 6601 dbSNP
rs1329070677 6616 dbSNP
rs910686115 6620 dbSNP
rs975684476 6626 dbSNP
rs1412729263 6627 dbSNP
rs1373460976 6630 dbSNP
rs1294878107 6636 dbSNP
rs1028596258 6640 dbSNP
rs955526263 6660 dbSNP
rs1435265117 6668 dbSNP
rs372056123 6669 dbSNP
rs1156915996 6671 dbSNP
rs1223144443 6692 dbSNP
rs1471175814 6694 dbSNP
rs115019863 6696 dbSNP
rs1187557347 6698 dbSNP
rs922996587 6703 dbSNP
rs763584824 6706 dbSNP
rs945520389 6712 dbSNP
rs1318817013 6722 dbSNP
rs1316860111 6729 dbSNP
rs536044887 6730 dbSNP
rs1352268609 6733 dbSNP
rs1257105833 6738 dbSNP
rs1413858956 6739 dbSNP
rs879089767 6739 dbSNP
rs1353107221 6741 dbSNP
rs1484800970 6743 dbSNP
rs1314504071 6761 dbSNP
rs1415115034 6767 dbSNP
rs1190558302 6775 dbSNP
rs192605910 6789 dbSNP
rs909152876 6811 dbSNP
rs894402326 6815 dbSNP
rs1410715991 6817 dbSNP
rs575982575 6818 dbSNP
rs1045443205 6822 dbSNP
rs1054971248 6824 dbSNP
rs1158674499 6827 dbSNP
rs1374530519 6833 dbSNP
rs1432445104 6834 dbSNP
rs1314565840 6839 dbSNP
rs1340833043 6842 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection PAR-CLIP data was present in GSM545217. RNA binding protein: AGO2. Condition:miR-7 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' uuguuguuuagggucAGAUGGa 5'
                         |||||| 
Target 5' ---------------UCUACCu 3'
 		1 - 7
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 201626.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 201626.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine "PAR-CLIP data was present in GSM1065669. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
Experimental Support 4 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions MCF7
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRR1045082. RNA binding protein: AGO2. Condition:Untreated ...

- Farazi TA; Ten Hoeve JJ; Brown M; et al., 2014, Genome biology.

Article - Farazi TA; Ten Hoeve JJ; Brown M; et al.
- Genome biology, 2014
BACKGROUND: Various microRNAs (miRNAs) are up- or downregulated in tumors. However, the repression of cognate miRNA targets responsible for the phenotypic effects of this dysregulation in patients remains largely unexplored. To define miRNA targets and associated pathways, together with their relationship to outcome in breast cancer, we integrated patient-paired miRNA-mRNA expression data with a set of validated miRNA targets and pathway inference. RESULTS: To generate a biochemically-validated set of miRNA-binding sites, we performed argonaute-2 photoactivatable-ribonucleoside-enhanced crosslinking and immunoprecipitation (AGO2-PAR-CLIP) in MCF7 cells. We then defined putative miRNA-target interactions using a computational model, which ranked and selected additional TargetScan-predicted interactions based on features of our AGO2-PAR-CLIP binding-site data. We subselected modeled interactions according to the abundance of their constituent miRNA and mRNA transcripts in tumors, and we took advantage of the variability of miRNA expression within molecular subtypes to detect miRNA repression. Interestingly, our data suggest that miRNA families control subtype-specific pathways; for example, miR-17, miR-19a, miR-25, and miR-200b show high miRNA regulatory activity in the triple-negative, basal-like subtype, whereas miR-22 and miR-24 do so in the HER2 subtype. An independent dataset validated our findings for miR-17 and miR-25, and showed a correlation between the expression levels of miR-182 targets and overall patient survival. Pathway analysis associated miR-17, miR-19a, and miR-200b with leukocyte transendothelial migration. CONCLUSIONS: We combined PAR-CLIP data with patient expression data to predict regulatory miRNAs, revealing potential therapeutic targets and prognostic markers in breast cancer.
LinkOut: [PMID: 24398324]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000311180.8 | 3UTR | UAACAUUAGGGUCUACCUCUACCUCAAUUUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM545217
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-7 transfection
Location of target site ENST00000311180.8 | 3UTR | UCUACCUCUACCUCAAUUUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000311180.8 | 3UTR | AGUAACAUUAGGGUCUACCUCUACCUCAAUUUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000311180.8 | 3UTR | AUUAGGGUCUACCUCUACCUCAAUUUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000311180.8 | 3UTR | UAACAUUAGGGUCUACCUCUACCUCAAUUUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1065669
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_8
Location of target site ENST00000311180.8 | 3UTR | CAUUAGGGUCUACCUCUACCUCAAUUUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset SRR1045082
Method / RBP PAR-CLIP / AGO2
Cell line / Condition MCF7 / Untreated
Location of target site ENST00000311180.8 | 3UTR | UCUACCUCUACCUCAAUUUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 24398324 / SRX388831
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
66 hsa-miR-3529-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT068541 NHLRC3 NHL repeat containing 3 2 6
MIRT094173 PCGF3 polycomb group ring finger 3 2 6
MIRT100107 ABT1 activator of basal transcription 1 2 8
MIRT120933 PDE12 phosphodiesterase 12 2 8
MIRT179060 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 2 6
MIRT202049 ZSWIM1 zinc finger SWIM-type containing 1 2 2
MIRT215733 C5ORF51 chromosome 5 open reading frame 51 2 10
MIRT254619 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT266230 PEX11B peroxisomal biogenesis factor 11 beta 2 2
MIRT297452 SLC20A1 solute carrier family 20 member 1 2 4
MIRT315453 SLC16A10 solute carrier family 16 member 10 2 2
MIRT442138 C3orf17 nucleolus and neural progenitor protein 2 2
MIRT453879 IFRD1 interferon related developmental regulator 1 2 12
MIRT456259 TDRKH tudor and KH domain containing 2 12
MIRT456413 MTRF1L mitochondrial translational release factor 1 like 2 2
MIRT459730 RRM1 ribonucleotide reductase catalytic subunit M1 2 2
MIRT461475 METTL1 methyltransferase like 1 2 2
MIRT463790 YBX1 Y-box binding protein 1 2 6
MIRT464032 WASL Wiskott-Aldrich syndrome like 2 2
MIRT464207 VGLL4 vestigial like family member 4 2 2
MIRT466713 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT467958 SLC16A1 solute carrier family 16 member 1 2 4
MIRT469225 RHOBTB3 Rho related BTB domain containing 3 2 2
MIRT473960 LRRC58 leucine rich repeat containing 58 2 2
MIRT475310 IFNLR1 interferon lambda receptor 1 2 2
MIRT476946 FAM83G family with sequence similarity 83 member G 2 4
MIRT477746 EDN1 endothelin 1 2 2
MIRT478261 DDX19B DEAD-box helicase 19B 2 2
MIRT478681 CSRP2 cysteine and glycine rich protein 2 2 4
MIRT490256 HAAO 3-hydroxyanthranilate 3,4-dioxygenase 2 2
MIRT493290 LNPEP leucyl and cystinyl aminopeptidase 2 2
MIRT493565 HSPA5 heat shock protein family A (Hsp70) member 5 2 2
MIRT495961 TBC1D19 TBC1 domain family member 19 2 2
MIRT497107 BEST3 bestrophin 3 2 2
MIRT498349 CISD1 CDGSH iron sulfur domain 1 2 2
MIRT500784 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 8
MIRT501092 SLC5A6 solute carrier family 5 member 6 2 4
MIRT505308 TPD52 tumor protein D52 2 2
MIRT511108 NFIB nuclear factor I B 2 4
MIRT512736 CD59 CD59 molecule (CD59 blood group) 2 4
MIRT514270 ZNF519 zinc finger protein 519 2 2
MIRT514603 NDUFA12 NADH:ubiquinone oxidoreductase subunit A12 2 4
MIRT515379 RPL7 ribosomal protein L7 2 2
MIRT518565 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT520460 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT529766 SF3B1 splicing factor 3b subunit 1 2 2
MIRT538006 DNAL1 dynein axonemal light chain 1 2 2
MIRT538251 CUL3 cullin 3 2 4
MIRT543778 RBM12B RNA binding motif protein 12B 2 4
MIRT546204 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT547202 PARP1 poly(ADP-ribose) polymerase 1 2 2
MIRT548441 ELMOD2 ELMO domain containing 2 2 2
MIRT551635 TRUB1 TruB pseudouridine synthase family member 1 2 4
MIRT553335 TSC22D2 TSC22 domain family member 2 2 2
MIRT556170 MCC mutated in colorectal cancers 2 2
MIRT557969 FAM222B family with sequence similarity 222 member B 2 2
MIRT560717 ZNF749 zinc finger protein 749 2 2
MIRT564115 ZYG11B zyg-11 family member B, cell cycle regulator 2 4
MIRT564375 MRPS18B mitochondrial ribosomal protein S18B 2 2
MIRT566934 LIN28B lin-28 homolog B 2 2
MIRT573339 TUBD1 tubulin delta 1 2 2
MIRT607187 SPRY4 sprouty RTK signaling antagonist 4 2 2
MIRT694902 THAP6 THAP domain containing 6 2 2
MIRT698514 TGFBR1 transforming growth factor beta receptor 1 2 2
MIRT704038 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 2
MIRT714583 PRRC1 proline rich coiled-coil 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3529-5p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-3529-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-3529-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-3529-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

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