miRTarBase - #MIRT122450


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pre-miRNA Information
pre-miRNA hsa-mir-655   
Genomic Coordinates chr14: 101049550 - 101049646
Synonyms MIRN655, hsa-mir-655, MIR655
Description Homo sapiens miR-655 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-655-5p
Sequence 23| AGAGGUUAUCCGUGUUAUGUUC |44
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs766575622 4 dbSNP
rs754023562 5 dbSNP
rs757713353 10 dbSNP
rs369862924 11 dbSNP
rs552601004 12 dbSNP
rs753191773 14 dbSNP
rs569206109 15 dbSNP
rs373094888 18 dbSNP
rs778280798 22 dbSNP
Putative Targets

Gene Information
Gene Symbol SMIM13   
Synonyms C6orf228
Description small integral membrane protein 13
Transcript NM_001135575   
Expression
Putative miRNA Targets on SMIM13
3'UTR of SMIM13
(miRNA target sites are highlighted)		 
>SMIM13|NM_001135575|3'UTR
   1 TCCTGTACTTGTGAAGGATGAAAAGGCAGTTGCCAGCTTCTGTCTTTTACTGACTTCGCTTTGAAATTTACTAATGACTG
  81 AAGAACATTTGTATTGGATTTTAAGTCGAATTTTAAAAAAGATTTACATGTAAGCCATATAAAAATAAAGGGAACTGAAA
 161 CCAAATTGGACTATTATAAATTTCATCTTAAAGATAATCTTTTGTTTCACCAGCTTTCTACTTATACACTTATTCCTTGG
 241 CTTTTGGGCTTATTTTCTTGCACTGGTGCAGATCTGGTAAACATTAAAGGCTTGAAAAACCATATTTTGTTAGCCCTAAA
 321 ATGTACATTTTTCTTCCCATTTTAACTTATCTGAAATTGGGATGCATCTCATTACTGTCAACCAGGTGATAGTCATGTAA
 401 CGCTCCTACCGTGTGCATGTGTGAATTTACAGCTTGTCATCGTGTCATCCCTTTAACCAACATGTGTTTTGTTGGTATCA
 481 AATGTGTCAGGTTTAATTGACATTTTAAAATGTCTTCAAAAAGATCACACTATGATTCAGCATTGAAACGAAAAGTTATT
 561 GTGTATGCAGAAAAGCATGGAAACAGAGCAGCAGGGCGTACATTTGATATTAGTGAAGCAAATATTCGTCGCTGGAGAAA
 641 TGATCGCAATTCCATATTTTCCTGCAAAGCAACAACAAAATGTTTTACGGGACCTAAGAAAGGTAGGTACCCACAAGTAG
 721 ATGAAGCTGTACTACGTTTCGTCAGTGAGACACGTGCAAAAGGATTGCCTATCACACGCCAAGCAATGCAATTGAAGGCA
 801 GGAGAAGTTGCCAAAACCCTAGGAATTGATGAAACAAAATTCAAAGCCACAAGAGGCTGGTGTGACCGATTCATGCGTCG
 881 AGCAGGACTATCATTAAGGCATCAAACATCGTTTTGTCCCAAGCTCCCCACTGCCATTAAACAGAAGACAGTGTTGGAGC
 961 ACTCTTTCAAGAAGTGCTGCATAACCAGTACTCTTGACAACACCGGGAGAGACGTTCTGTGGAAAAATGCAGACATCAAT
1041 GACTGTGGTTTGAAAAGTGATTCAGAAGAGTTGGATTCAGAATATGAAGTTATAATTATAACTTAACCAATTTATTTCAC
1121 ACATTTTCTTTACATATGCACAAGATTGATGTGATAAAAATCTGTTTAACTCAAAGCGCTGTTTCAATAAATATAAACAT
1201 TTTCTGTGATATGAAAGCATTGTGTCATAGTTTAATGGGCAGTGTTTTTTCTTAGTGATACATATGGTGCATCTTAACAA
1281 TTGGTAGTGTCTTAGGTTAAATTAAAAATGGTAGCTTGTAAATTTATTTTTCTTTTTAAGATAGCAGTTATTTATTGGGG
1361 AATTTGATTCTGACTCTTACAATGTTAAACTTGTAATCCTGTGTGAAACACATGTTTTTGGGGGGGAGGGGGTAACCAAG
1441 ATTTCAGGGTAGTAACTTAGGAATCTAAGAACTATCTTCTACTTTAGGAAGAGTGGGATTAGTTACTCCCTTTGTATAGG
1521 AGGACTTTATGCTCAAGGAATGTGTTGTGGAGAAAAACACTTCTTCACAAACAATTCAGTGACAAGACCTCAAAGGTAAT
1601 GCGTATTGAGGAAAACAGTAGTGGGTGAAAATTCCCGCTTAGCTGTAAAATGACTCTCTTGCCAGGTTTCCGTGTTTGTC
1681 TCAACTGAACTCTGGGCTGAGTGTTTACCAGGGAGAAGAGATGTGAATTAAACAACCTTCCTGTTTAGTGTTACCTGCTT
1761 TGTACAAGAATGAAGTGCAAAGCCAACTTACTTTATTAATCCAAGTTCTTTTTATGTTTTTCTTAACCTTTATTAAGGAC
1841 TAGTCATCACAAAATATCTATTTAACCTCTATTTTATGATGGTGTGTTATTATGTTTGATACCTCATACTTCTTGCTTAG
1921 AGTTTTGTTTAACAGTTCACTGGCTCTGTCCCAATGTTTGTGATGAACACCTTTTTGCTATATTGTAGCTCTTGGAGATA
2001 CTAAAAGAGAATTCACAGAACATAACTTTAGTTTTATGTGTTTGCTAGGGGAAGATTTCCTAGCAGCTGAGAGCAAGGCA
2081 CAGTCTCTGTCTTCATTTCTTTATTAGATACAATTTTCTATTTTTATGTGACTCTAGGGCATAACAAAACAGTGACAGTT
2161 TCAAGCGTTAATTTTAATGCTTCCTACTAGCTAAATATCATCTTAAAATGATTATCAGAAAAAAAAATAATGCCCCCAAA
2241 AACTTTTGGGGGCATTATTTGGTACTGGGAGGATATTTAAATTAGATTTTTCATAGTCTATTGTTTTGAACTATGGATTC
2321 TGTTTTATGGTGGATACCTAAGGTTTATATAATAGTTGCTGGAAAACTTAAAGTAGCTGGTGAGCTTCCTGTTATGTCAC
2401 TATTAAAGAATGATGGCTGATGTAACTCTGCCCCTGAAATCTACAAGGGTCATGCCCAAATTAATACAGGTTAACCTTTG
2481 TAGAGGTATATATGTTGGCATTATTTATTGACATTTATGCTTCAAGCATGTCTTATTTTATGTAATTTTAAGAAATACTC
2561 TATTTAACTTGTGAAATATACCTAAAAGCATACTAGTTAGCTCTTAGACTCTCACTTAGGGAGGGTAAAGAAACATCACT
2641 GATGCCAATATGAAGATCTATAAACAAATCCTTTGTTTAGAACTTTTTTCTCTTCGTGCACCTCACAACACACTTACCAT
2721 GGTACATATTTCTTAATGCCACTAAGAAAGGCAAGATAGTGAACGCAGAATTATTTATGTGGTATAGTGTTTGTTTTCCT
2801 GTTTTAGTGCTTTTGTAGCTAAAACTTACTGGAACTGCATCACAACTACATTTGCAGTCTCAGTGGGAGGTGGACTAGCC
2881 TGTGGTTAATTTTAGAGCTTAAAAGTTTATAAGCATTAAAAACACATACATGTATTAGAATCTTGTCTAACCCCTCACAA
2961 AGGATGATGGTGATCAGCATGCCATCTTTTGAAGATTAATTCTAAAATTGAGGACTCTGGTAGGTTGTTTTATTTCCTTC
3041 CCAACCAGCCATTCATTTCCAATTGTTCTGCCTTTGAAACTTTTTGTGAAAATTGCCTGTACCAATTGCATTGGTTGCGT
3121 TGCTCTGATTTAAATGCCAAAAACACTAAATATTTGTGTAGTGCTGTTAAATGAGGTTTTTGATATTTCCATCAAAATGA
3201 ATATAAAATTCACTTGATGGATTTTGTAGTGATGTTTTCACAGTTGAAACAAACATATTGCTGTGCGGTGGACAGCCACT
3281 TCACAGACATGCAGACCCATTTCTTTAGAGATATTAGGTTTAAAACCCATTTTAATTTTATTTTGCTGAAGGTTTGGAAT
3361 ATATAAAGTAATGGATTCACAAAATATGATATCTTAAAACATGTTGAAAGATTTGAAAGTGGTGCATTTTTACTTTTAAG
3441 AGCAGCAATCTTTGAAATTAGTCAACAATGCAGTCTTTTTTAAAAGTCAGTTTTCTCAAGTAGTATGTTGTAACGTAAGA
3521 TGTAACTGATATAACTAGATTTTGACTGGTAAACTTAAAGTGCTTTTTATATTTGAGGTTGACTTTAAAAAGCCATTGAG
3601 CAGTCCTCAGAGGTTATGGACTCTCAAGCGACTAATGGAATAGTGTTCTGTTGTGAAGTCTAGAACTAAAGCACCTTGTA
3681 TTGTCTGCTTCTAAAGTGTCCTATAGTTTTTAACTTAAAGTGTAAAGAGTAACATTTTATCTTATGTCAATTAAAGTTAC
3761 ATTTTTCATTTGTTGGTGTACATGTGCTACCTGTTTTATGGGGAATGTTTAACACGATCCTCCAAGTTGGTTCTATGCAT
3841 AACCATTCACCAAATACTGCTGCTGTGATTCCTTGAAGGAAATATTCTGTGGTCTGCTATGATGCATTGCCATCTTGCTG
3921 CTTGACAATAGGTTTATAAATAATTAGAATTACGTGTTTTAATAGTACCTTTGTATATATAACAAGATGTAAAATTAAAG
4001 ATGAGGAATGTGTGTAAATGATCATTCACTGTTTTTGTTTTAAAACTGGTCAGTACTATGAAGCTTCTGTGGTTTGTATG
4081 ATGTTTTAACTTTCACTTTAAACTGCATAGAATAAATTAAATTGAAAACAACAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cuUGUAUUGUGCCU--AUUGGAGa 5'
            ||| ||:|:  |  ||||||| 
Target 5' tcACAAAATATCTATTTAACCTCt 3'
 1847 - 1870 158.00 -11.70
2 
miRNA  3' cuuguAUUGUG-CCUAUUGGAGa 5'
               |||:|| || ||||||: 
Target 5' caaatTAATACAGGTTAACCTTt 3'
 2457 - 2479 149.00 -14.10
3 
miRNA  3' cuuGUAUUGUGCCUAUUGGAGa 5'
             |||  :|  |||||:||: 
Target 5' tttCATCTTAAAGATAATCTTt 3'
 181 - 202 127.00 -10.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31580592 58 COSMIC
COSN21202783 249 COSMIC
COSN26859653 596 COSMIC
COSN26859758 620 COSMIC
COSN30169042 629 COSMIC
COSN27054469 643 COSMIC
COSN29344373 676 COSMIC
COSN26858542 698 COSMIC
COSN7593887 784 COSMIC
COSN26576492 989 COSMIC
COSN7781695 1610 COSMIC
COSN26770384 1684 COSMIC
COSN2133782 2000 COSMIC
COSN26891094 2050 COSMIC
COSN17183117 2274 COSMIC
COSN30007217 2814 COSMIC
COSN20102403 2825 COSMIC
COSN1323017 3204 COSMIC
COSN20102405 3481 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs765447782 6 dbSNP
rs953338898 11 dbSNP
rs763582356 13 dbSNP
rs771467916 19 dbSNP
rs1253286762 25 dbSNP
rs1299070190 25 dbSNP
rs9468484 27 dbSNP
rs148895478 28 dbSNP
rs1415778297 31 dbSNP
rs1476287789 33 dbSNP
rs1361761431 35 dbSNP
rs1278459425 38 dbSNP
rs148370911 39 dbSNP
rs755726327 39 dbSNP
rs1423244101 43 dbSNP
rs72825155 51 dbSNP
rs372669441 52 dbSNP
rs536613850 58 dbSNP
rs974195710 59 dbSNP
rs754475810 72 dbSNP
rs927425974 79 dbSNP
rs1489375235 87 dbSNP
rs948730097 89 dbSNP
rs1245711758 92 dbSNP
rs1315819531 95 dbSNP
rs774924215 108 dbSNP
rs560493321 109 dbSNP
rs1276984438 115 dbSNP
rs1341650123 124 dbSNP
rs937617395 129 dbSNP
rs1398526339 136 dbSNP
rs1049264266 138 dbSNP
rs1294490879 155 dbSNP
rs1457041634 162 dbSNP
rs1172141484 165 dbSNP
rs1477883965 170 dbSNP
rs888027397 172 dbSNP
rs188546403 175 dbSNP
rs780851524 178 dbSNP
rs79900662 180 dbSNP
rs1209050587 184 dbSNP
rs901949030 185 dbSNP
rs193252144 188 dbSNP
rs1200584460 190 dbSNP
rs1318763714 195 dbSNP
rs1278115553 197 dbSNP
rs1028837539 200 dbSNP
rs1333342570 214 dbSNP
rs747725156 223 dbSNP
rs888911243 230 dbSNP
rs1386593931 244 dbSNP
rs1365010948 254 dbSNP
rs1333007651 257 dbSNP
rs1465687298 264 dbSNP
rs1398839173 267 dbSNP
rs1167934946 269 dbSNP
rs1467477999 270 dbSNP
rs1170117078 275 dbSNP
rs1419737254 285 dbSNP
rs1431280920 290 dbSNP
rs1409193779 291 dbSNP
rs531483650 303 dbSNP
rs769472703 312 dbSNP
rs762945559 314 dbSNP
rs892176653 326 dbSNP
rs946466752 329 dbSNP
rs1043488820 351 dbSNP
rs1194169542 357 dbSNP
rs549896121 361 dbSNP
rs1257136630 363 dbSNP
rs1232958275 366 dbSNP
rs996547528 367 dbSNP
rs571325657 378 dbSNP
rs1382159467 380 dbSNP
rs891388539 386 dbSNP
rs1328643820 397 dbSNP
rs1004752102 400 dbSNP
rs1402799118 402 dbSNP
rs1171987778 403 dbSNP
rs1464350047 409 dbSNP
rs1015763651 411 dbSNP
rs538643132 412 dbSNP
rs1440496064 417 dbSNP
rs1271319602 418 dbSNP
rs796174653 420 dbSNP
rs974143257 422 dbSNP
rs72825156 423 dbSNP
rs1444245740 424 dbSNP
rs970024515 430 dbSNP
rs984916865 431 dbSNP
rs981479851 443 dbSNP
rs1288540572 448 dbSNP
rs927837751 454 dbSNP
rs1189898920 462 dbSNP
rs1242385713 463 dbSNP
rs1352493815 463 dbSNP
rs1277463717 467 dbSNP
rs1474867755 475 dbSNP
rs1246340201 485 dbSNP
rs1340627260 488 dbSNP
rs1165730080 493 dbSNP
rs940928125 499 dbSNP
rs1427027251 501 dbSNP
rs939285368 503 dbSNP
rs185027927 514 dbSNP
rs1362398380 515 dbSNP
rs1036338802 520 dbSNP
rs1418910320 521 dbSNP
rs1379891465 526 dbSNP
rs61744084 527 dbSNP
rs1473901495 528 dbSNP
rs759746696 529 dbSNP
rs555956196 530 dbSNP
rs1186960825 531 dbSNP
rs1484954107 532 dbSNP
rs573885726 533 dbSNP
rs1266029765 534 dbSNP
rs1217784986 539 dbSNP
rs946579980 544 dbSNP
rs1281695924 550 dbSNP
rs775927692 551 dbSNP
rs889201916 555 dbSNP
rs767807649 556 dbSNP
rs1230953452 559 dbSNP
rs1208489975 562 dbSNP
rs899609007 564 dbSNP
rs1053601350 574 dbSNP
rs892408185 575 dbSNP
rs1343281992 578 dbSNP
rs140036592 585 dbSNP
rs1407247250 594 dbSNP
rs1391763362 596 dbSNP
rs761184915 598 dbSNP
rs763819251 599 dbSNP
rs1024652855 601 dbSNP
rs1050788607 602 dbSNP
rs532517665 609 dbSNP
rs1240662462 612 dbSNP
rs970760465 619 dbSNP
rs144164389 626 dbSNP
rs1268577717 629 dbSNP
rs1211251969 631 dbSNP
rs1033880538 632 dbSNP
rs1397154928 644 dbSNP
rs952451374 646 dbSNP
rs1463672298 647 dbSNP
rs1015883375 653 dbSNP
rs984946644 655 dbSNP
rs764095878 665 dbSNP
rs1322002498 671 dbSNP
rs577686185 689 dbSNP
rs1210112781 690 dbSNP
rs909360832 691 dbSNP
rs962281801 692 dbSNP
rs972690608 693 dbSNP
rs1193250402 697 dbSNP
rs1478588992 708 dbSNP
rs923298558 720 dbSNP
rs933354304 724 dbSNP
rs995694480 731 dbSNP
rs56690344 733 dbSNP
rs1284337317 736 dbSNP
rs750661977 737 dbSNP
rs545398861 741 dbSNP
rs1280714166 742 dbSNP
rs1190609992 744 dbSNP
rs910665573 753 dbSNP
rs936717731 754 dbSNP
rs970176287 755 dbSNP
rs1198392885 758 dbSNP
rs188230206 770 dbSNP
rs776689389 772 dbSNP
rs1427188033 778 dbSNP
rs1458747941 779 dbSNP
rs1441613645 783 dbSNP
rs761860481 789 dbSNP
rs765478056 792 dbSNP
rs956268323 793 dbSNP
rs1394785901 813 dbSNP
rs1172178225 819 dbSNP
rs906443644 821 dbSNP
rs1002307202 822 dbSNP
rs1177443529 822 dbSNP
rs1033333436 830 dbSNP
rs888214389 831 dbSNP
rs1005229222 848 dbSNP
rs988062462 849 dbSNP
rs1441786332 857 dbSNP
rs1277860459 865 dbSNP
rs1016393988 868 dbSNP
rs750656384 869 dbSNP
rs913844101 872 dbSNP
rs1347585523 874 dbSNP
rs1405983660 877 dbSNP
rs1283024533 878 dbSNP
rs878979698 880 dbSNP
rs539118487 881 dbSNP
rs1449321756 882 dbSNP
rs1375406480 888 dbSNP
rs1311410624 890 dbSNP
rs979245965 891 dbSNP
rs920977146 900 dbSNP
rs1158012817 901 dbSNP
rs932418677 909 dbSNP
rs1415264838 912 dbSNP
rs562571211 912 dbSNP
rs527609303 925 dbSNP
rs1474815460 927 dbSNP
rs1255366278 928 dbSNP
rs1202827688 943 dbSNP
rs1218485956 944 dbSNP
rs766286981 946 dbSNP
rs1031032766 953 dbSNP
rs4713202 971 dbSNP
rs1315363498 974 dbSNP
rs1314881551 991 dbSNP
rs1490407959 996 dbSNP
rs1229005192 1005 dbSNP
rs939707420 1006 dbSNP
rs561109800 1011 dbSNP
rs1266517260 1012 dbSNP
rs373464487 1014 dbSNP
rs910528223 1020 dbSNP
rs1473416442 1024 dbSNP
rs549957527 1026 dbSNP
rs1451118481 1028 dbSNP
rs1164823295 1044 dbSNP
rs146781827 1044 dbSNP
rs1469728236 1047 dbSNP
rs191489815 1064 dbSNP
rs1415561066 1066 dbSNP
rs1195840824 1074 dbSNP
rs1044586924 1075 dbSNP
rs1478108583 1090 dbSNP
rs1367748347 1126 dbSNP
rs906065108 1131 dbSNP
rs1184583499 1133 dbSNP
rs1484998592 1135 dbSNP
rs547404077 1137 dbSNP
rs1214387848 1138 dbSNP
rs1425527871 1164 dbSNP
rs1302708641 1169 dbSNP
rs1271357195 1171 dbSNP
rs945236823 1172 dbSNP
rs1341709897 1176 dbSNP
rs1295258398 1178 dbSNP
rs747637867 1179 dbSNP
rs565517684 1181 dbSNP
rs1369253700 1182 dbSNP
rs1293810060 1184 dbSNP
rs1391564019 1186 dbSNP
rs184054621 1186 dbSNP
rs1172206901 1194 dbSNP
rs755444459 1196 dbSNP
rs779441765 1201 dbSNP
rs755618860 1211 dbSNP
rs1010209762 1213 dbSNP
rs748458843 1219 dbSNP
rs1020798446 1227 dbSNP
rs1194434126 1230 dbSNP
rs1308390937 1230 dbSNP
rs967945034 1239 dbSNP
rs979193441 1240 dbSNP
rs1251171589 1248 dbSNP
rs1335667610 1259 dbSNP
rs1005260194 1262 dbSNP
rs1015334740 1263 dbSNP
rs1314374501 1265 dbSNP
rs189878738 1266 dbSNP
rs896899516 1270 dbSNP
rs994098365 1271 dbSNP
rs1395668269 1274 dbSNP
rs1030477695 1279 dbSNP
rs567572640 1284 dbSNP
rs748915249 1285 dbSNP
rs140553143 1287 dbSNP
rs1017621235 1292 dbSNP
rs1453964660 1297 dbSNP
rs757783413 1297 dbSNP
rs986551316 1315 dbSNP
rs556301804 1322 dbSNP
rs939675852 1323 dbSNP
rs1250424837 1327 dbSNP
rs1194512954 1333 dbSNP
rs577747335 1336 dbSNP
rs1484532698 1338 dbSNP
rs1244810550 1343 dbSNP
rs1289075142 1344 dbSNP
rs545147401 1345 dbSNP
rs920136828 1347 dbSNP
rs1249790297 1368 dbSNP
rs1239133166 1370 dbSNP
rs931551213 1376 dbSNP
rs1334593289 1379 dbSNP
rs914017384 1383 dbSNP
rs1397665563 1384 dbSNP
rs1402866474 1394 dbSNP
rs1435990385 1396 dbSNP
rs772423221 1397 dbSNP
rs945463273 1399 dbSNP
rs1432679608 1401 dbSNP
rs1044701932 1405 dbSNP
rs1179827259 1408 dbSNP
rs982371868 1410 dbSNP
rs780655532 1412 dbSNP
rs551722355 1416 dbSNP
rs116448153 1417 dbSNP
rs1163214813 1420 dbSNP
rs1258875198 1420 dbSNP
rs1054926810 1421 dbSNP
rs145688318 1422 dbSNP
rs12205389 1423 dbSNP
rs1299088220 1425 dbSNP
rs997919376 1426 dbSNP
rs1412693192 1427 dbSNP
rs1342069924 1428 dbSNP
rs1298594908 1429 dbSNP
rs1396500129 1433 dbSNP
rs1010157120 1438 dbSNP
rs1052374181 1440 dbSNP
rs890591114 1441 dbSNP
rs181432359 1448 dbSNP
rs1021580804 1449 dbSNP
rs1008139214 1450 dbSNP
rs1474521192 1452 dbSNP
rs904569378 1455 dbSNP
rs762254328 1457 dbSNP
rs1446038607 1466 dbSNP
rs1281772353 1469 dbSNP
rs1334988082 1473 dbSNP
rs1382911957 1477 dbSNP
rs958263412 1477 dbSNP
rs761925646 1481 dbSNP
rs1010935740 1488 dbSNP
rs543658133 1491 dbSNP
rs1244548426 1495 dbSNP
rs1429817974 1498 dbSNP
rs1312514081 1499 dbSNP
rs1326051586 1500 dbSNP
rs1308870769 1501 dbSNP
rs1227955563 1503 dbSNP
rs1395238131 1504 dbSNP
rs1250542760 1511 dbSNP
rs1020943068 1514 dbSNP
rs1426461940 1521 dbSNP
rs1168833308 1523 dbSNP
rs1475327965 1525 dbSNP
rs186950404 1527 dbSNP
rs1239994750 1536 dbSNP
rs539878491 1557 dbSNP
rs769799102 1562 dbSNP
rs1251777276 1564 dbSNP
rs953881363 1570 dbSNP
rs967209823 1592 dbSNP
rs982183376 1603 dbSNP
rs190096149 1604 dbSNP
rs1019328136 1609 dbSNP
rs1205494746 1618 dbSNP
rs1243639735 1626 dbSNP
rs1461863351 1637 dbSNP
rs547174013 1638 dbSNP
rs1236713055 1640 dbSNP
rs559359270 1648 dbSNP
rs1254410216 1662 dbSNP
rs1372041252 1664 dbSNP
rs1325269259 1666 dbSNP
rs529660637 1672 dbSNP
rs547754560 1673 dbSNP
rs972516668 1674 dbSNP
rs1330220566 1681 dbSNP
rs919583979 1683 dbSNP
rs1171318475 1685 dbSNP
rs1372884729 1694 dbSNP
rs1417738417 1696 dbSNP
rs1175940066 1701 dbSNP
rs1454414846 1702 dbSNP
rs1460745163 1707 dbSNP
rs1394141631 1716 dbSNP
rs1179244770 1719 dbSNP
rs1191179831 1721 dbSNP
rs1458756020 1722 dbSNP
rs930995005 1728 dbSNP
rs768072105 1730 dbSNP
rs980331287 1731 dbSNP
rs28360554 1736 dbSNP
rs1280426462 1737 dbSNP
rs918227891 1747 dbSNP
rs1348847265 1751 dbSNP
rs1451341639 1776 dbSNP
rs1303031233 1785 dbSNP
rs1232182034 1808 dbSNP
rs1375534723 1811 dbSNP
rs1280220657 1827 dbSNP
rs933739935 1829 dbSNP
rs1353298674 1832 dbSNP
rs116297649 1845 dbSNP
rs148100614 1847 dbSNP
rs1382438150 1861 dbSNP
rs1294334005 1862 dbSNP
rs1324501092 1868 dbSNP
rs1408014079 1869 dbSNP
rs891837419 1870 dbSNP
rs571742487 1872 dbSNP
rs1043154656 1873 dbSNP
rs1322720091 1877 dbSNP
rs1007761083 1883 dbSNP
rs751383377 1891 dbSNP
rs545873867 1893 dbSNP
rs1486857081 1903 dbSNP
rs539161638 1906 dbSNP
rs894081069 1909 dbSNP
rs1028214103 1918 dbSNP
rs1284995474 1919 dbSNP
rs1261248387 1922 dbSNP
rs553986748 1943 dbSNP
rs1477068771 1949 dbSNP
rs1371781411 1951 dbSNP
rs1011133552 1955 dbSNP
rs1415778597 1962 dbSNP
rs1355156890 1978 dbSNP
rs1311467217 1981 dbSNP
rs1454987497 1986 dbSNP
rs1202012072 1998 dbSNP
rs1021381420 2004 dbSNP
rs762602634 2008 dbSNP
rs1003950602 2022 dbSNP
rs1174816259 2036 dbSNP
rs1035143777 2037 dbSNP
rs1188490615 2039 dbSNP
rs1008022695 2048 dbSNP
rs1255073185 2048 dbSNP
rs1019864830 2050 dbSNP
rs565347343 2056 dbSNP
rs972464297 2061 dbSNP
rs572457599 2064 dbSNP
rs962612451 2067 dbSNP
rs536274049 2082 dbSNP
rs1275131190 2085 dbSNP
rs918498414 2086 dbSNP
rs1291785509 2107 dbSNP
rs531088705 2114 dbSNP
rs927532652 2121 dbSNP
rs1384322535 2124 dbSNP
rs1362205710 2126 dbSNP
rs1287989523 2130 dbSNP
rs933706551 2135 dbSNP
rs1165045322 2136 dbSNP
rs938933956 2138 dbSNP
rs1303320593 2139 dbSNP
rs1460824460 2140 dbSNP
rs1415638733 2161 dbSNP
rs1344567523 2162 dbSNP
rs993131565 2178 dbSNP
rs913392461 2184 dbSNP
rs946244438 2187 dbSNP
rs1463729877 2189 dbSNP
rs1318848356 2195 dbSNP
rs1051190233 2197 dbSNP
rs1468409518 2199 dbSNP
rs910998048 2200 dbSNP
rs1216546578 2201 dbSNP
rs554969450 2209 dbSNP
rs942404227 2211 dbSNP
rs1372767733 2215 dbSNP
rs1439588676 2219 dbSNP
rs199511833 2219 dbSNP
rs1392186910 2226 dbSNP
rs200649325 2227 dbSNP
rs1491157158 2228 dbSNP
rs60645095 2228 dbSNP
rs370639950 2229 dbSNP
rs1168096808 2231 dbSNP
rs1447854076 2240 dbSNP
rs1397169702 2243 dbSNP
rs1194323552 2244 dbSNP
rs199941494 2248 dbSNP
rs182312857 2251 dbSNP
rs752606128 2253 dbSNP
rs543718459 2266 dbSNP
rs1265360801 2272 dbSNP
rs1198011168 2274 dbSNP
rs946952938 2279 dbSNP
rs565124505 2294 dbSNP
rs567993614 2301 dbSNP
rs1190003623 2304 dbSNP
rs902753982 2307 dbSNP
rs890502574 2332 dbSNP
rs1008554994 2340 dbSNP
rs1040995514 2356 dbSNP
rs1003573597 2365 dbSNP
rs1368065527 2375 dbSNP
rs1308534741 2378 dbSNP
rs1391856455 2383 dbSNP
rs576973599 2403 dbSNP
rs1296216559 2415 dbSNP
rs994020407 2417 dbSNP
rs1436417236 2423 dbSNP
rs1377495879 2432 dbSNP
rs1419205976 2433 dbSNP
rs1454002532 2441 dbSNP
rs1026705022 2444 dbSNP
rs1184121571 2445 dbSNP
rs895250729 2450 dbSNP
rs1250504261 2455 dbSNP
rs952447362 2456 dbSNP
rs1001167416 2460 dbSNP
rs1012254337 2465 dbSNP
rs1034426823 2468 dbSNP
rs959764556 2469 dbSNP
rs1281502008 2471 dbSNP
rs993472899 2481 dbSNP
rs1342468228 2485 dbSNP
rs1261939849 2490 dbSNP
rs1358308796 2493 dbSNP
rs774461140 2498 dbSNP
rs530395987 2518 dbSNP
rs1335080601 2522 dbSNP
rs1426173296 2533 dbSNP
rs967493188 2551 dbSNP
rs541172437 2558 dbSNP
rs1312071440 2561 dbSNP
rs1355787817 2561 dbSNP
rs1434293401 2574 dbSNP
rs1400390772 2579 dbSNP
rs1160352805 2580 dbSNP
rs941576714 2580 dbSNP
rs1228212287 2591 dbSNP
rs80156829 2592 dbSNP
rs1157502926 2595 dbSNP
rs1476481516 2600 dbSNP
rs529761610 2601 dbSNP
rs1440315360 2630 dbSNP
rs926002156 2632 dbSNP
rs932057102 2646 dbSNP
rs1364761552 2648 dbSNP
rs1402833149 2649 dbSNP
rs1050568381 2661 dbSNP
rs11547313 2667 dbSNP
rs140994098 2678 dbSNP
rs547814349 2679 dbSNP
rs944748322 2688 dbSNP
rs1041336436 2696 dbSNP
rs547063229 2697 dbSNP
rs1338918469 2702 dbSNP
rs562919321 2705 dbSNP
rs910850170 2706 dbSNP
rs372759398 2707 dbSNP
rs1384274360 2708 dbSNP
rs993966648 2711 dbSNP
rs371210071 2712 dbSNP
rs150235763 2714 dbSNP
rs1164642216 2718 dbSNP
rs989859326 2720 dbSNP
rs1375144148 2721 dbSNP
rs888318781 2723 dbSNP
rs1235159154 2727 dbSNP
rs1446085298 2731 dbSNP
rs1001682193 2737 dbSNP
rs914320800 2739 dbSNP
rs550049674 2740 dbSNP
rs946900667 2744 dbSNP
rs1042935433 2747 dbSNP
rs1226399507 2755 dbSNP
rs1034129909 2758 dbSNP
rs571872162 2765 dbSNP
rs939572563 2766 dbSNP
rs1364774830 2768 dbSNP
rs1445873107 2772 dbSNP
rs1056479049 2805 dbSNP
rs1013937471 2813 dbSNP
rs538865139 2817 dbSNP
rs1020461430 2819 dbSNP
rs36113961 2821 dbSNP
rs398000453 2821 dbSNP
rs375131278 2822 dbSNP
rs1399021535 2824 dbSNP
rs201408087 2825 dbSNP
rs1017010656 2830 dbSNP
rs778597241 2837 dbSNP
rs898574614 2849 dbSNP
rs1194948404 2850 dbSNP
rs979023233 2851 dbSNP
rs547945329 2871 dbSNP
rs926116821 2874 dbSNP
rs994040505 2879 dbSNP
rs1441390432 2897 dbSNP
rs1025876228 2901 dbSNP
rs566059198 2909 dbSNP
rs953600088 2910 dbSNP
rs1439515919 2931 dbSNP
rs1273397594 2935 dbSNP
rs1195051558 2938 dbSNP
rs1454609446 2941 dbSNP
rs1341706312 2946 dbSNP
rs571479084 2953 dbSNP
rs911998121 2955 dbSNP
rs944675126 2960 dbSNP
rs1371743850 2964 dbSNP
rs186316537 2968 dbSNP
rs918467571 2969 dbSNP
rs929873882 2976 dbSNP
rs1356829017 2977 dbSNP
rs963744499 2979 dbSNP
rs1429584089 2986 dbSNP
rs796456064 2990 dbSNP
rs1175059205 2995 dbSNP
rs1434964819 3003 dbSNP
rs1188982494 3009 dbSNP
rs888261524 3011 dbSNP
rs914351813 3018 dbSNP
rs945759613 3019 dbSNP
rs978300881 3024 dbSNP
rs1236847182 3052 dbSNP
rs937211699 3053 dbSNP
rs924074151 3063 dbSNP
rs1183642911 3064 dbSNP
rs558961802 3066 dbSNP
rs1376155887 3073 dbSNP
rs895576897 3081 dbSNP
rs1409755405 3086 dbSNP
rs1471601591 3087 dbSNP
rs1348958240 3094 dbSNP
rs1315214758 3098 dbSNP
rs916825244 3100 dbSNP
rs1358259513 3103 dbSNP
rs1179607383 3104 dbSNP
rs769051177 3106 dbSNP
rs1402006794 3111 dbSNP
rs1169216923 3119 dbSNP
rs781637433 3120 dbSNP
rs1019906973 3129 dbSNP
rs1471581596 3131 dbSNP
rs1409104253 3139 dbSNP
rs1168484472 3141 dbSNP
rs1486106274 3143 dbSNP
rs902891783 3144 dbSNP
rs1000392705 3146 dbSNP
rs1033248437 3159 dbSNP
rs576504299 3162 dbSNP
rs953649296 3166 dbSNP
rs189593341 3167 dbSNP
rs1327743017 3172 dbSNP
rs986328885 3177 dbSNP
rs1415836390 3194 dbSNP
rs3734399 3204 dbSNP
rs1300646181 3206 dbSNP
rs1432473519 3212 dbSNP
rs577037205 3217 dbSNP
rs1319337598 3218 dbSNP
rs994632362 3235 dbSNP
rs1046901474 3238 dbSNP
rs1165357405 3238 dbSNP
rs1423101729 3241 dbSNP
rs1411368364 3242 dbSNP
rs1180281384 3246 dbSNP
rs1486986705 3253 dbSNP
rs369761910 3255 dbSNP
rs540882928 3256 dbSNP
rs1363136604 3258 dbSNP
rs3173488 3262 dbSNP
rs966156868 3267 dbSNP
rs1463918800 3268 dbSNP
rs1275665188 3270 dbSNP
rs1234442690 3279 dbSNP
rs151271258 3280 dbSNP
rs972179967 3281 dbSNP
rs1321436497 3288 dbSNP
rs9380113 3290 dbSNP
rs930657378 3291 dbSNP
rs372539864 3315 dbSNP
rs1203824569 3316 dbSNP
rs1296193214 3326 dbSNP
rs909815926 3334 dbSNP
rs1396587123 3347 dbSNP
rs574473722 3364 dbSNP
rs963943148 3365 dbSNP
rs1457360376 3381 dbSNP
rs937138203 3388 dbSNP
rs1440136632 3389 dbSNP
rs1172313796 3393 dbSNP
rs538013300 3394 dbSNP
rs1242298602 3401 dbSNP
rs895680197 3401 dbSNP
rs949797364 3402 dbSNP
rs1041477690 3404 dbSNP
rs1488457845 3405 dbSNP
rs143296446 3410 dbSNP
rs753928066 3419 dbSNP
rs902839133 3426 dbSNP
rs999837040 3437 dbSNP
rs541518743 3438 dbSNP
rs1296499439 3439 dbSNP
rs1225737159 3442 dbSNP
rs1372471682 3446 dbSNP
rs199688269 3447 dbSNP
rs1480725849 3450 dbSNP
rs1365455699 3451 dbSNP
rs1386108357 3451 dbSNP
rs1299647927 3463 dbSNP
rs1462358520 3463 dbSNP
rs1371397884 3469 dbSNP
rs1175546602 3475 dbSNP
rs567908133 3476 dbSNP
rs889383155 3489 dbSNP
rs1008100411 3503 dbSNP
rs1019109262 3506 dbSNP
rs1320582571 3507 dbSNP
rs1345991042 3510 dbSNP
rs769841476 3515 dbSNP
rs972127592 3516 dbSNP
rs992275822 3538 dbSNP
rs781024696 3557 dbSNP
rs1026423463 3563 dbSNP
rs1256046885 3567 dbSNP
rs952000724 3570 dbSNP
rs562982641 3573 dbSNP
rs1309144166 3579 dbSNP
rs1391907727 3583 dbSNP
rs796709594 3585 dbSNP
rs919894488 3587 dbSNP
rs878888954 3595 dbSNP
rs560871755 3596 dbSNP
rs1284576854 3610 dbSNP
rs1446063261 3613 dbSNP
rs1375998750 3617 dbSNP
rs1161844224 3621 dbSNP
rs1473219208 3621 dbSNP
rs182205515 3626 dbSNP
rs1270795798 3630 dbSNP
rs565464822 3631 dbSNP
rs1256491527 3633 dbSNP
rs1199385573 3651 dbSNP
rs532807647 3654 dbSNP
rs917075942 3656 dbSNP
rs891203544 3661 dbSNP
rs554329241 3664 dbSNP
rs1039537380 3671 dbSNP
rs899766743 3672 dbSNP
rs1477111076 3676 dbSNP
rs1011469751 3679 dbSNP
rs1400101612 3681 dbSNP
rs1160361877 3688 dbSNP
rs1041425866 3698 dbSNP
rs755068415 3704 dbSNP
rs547710539 3708 dbSNP
rs1411944101 3716 dbSNP
rs1157380287 3729 dbSNP
rs967489610 3733 dbSNP
rs935634507 3735 dbSNP
rs1369415877 3736 dbSNP
rs998526368 3739 dbSNP
rs1296513130 3740 dbSNP
rs1367870398 3749 dbSNP
rs1035878957 3751 dbSNP
rs1054128621 3769 dbSNP
rs992305269 3777 dbSNP
rs888818129 3784 dbSNP
rs1215489062 3785 dbSNP
rs916718814 3790 dbSNP
rs969621007 3792 dbSNP
rs1007800198 3794 dbSNP
rs1338971266 3795 dbSNP
rs1041053327 3797 dbSNP
rs147545591 3798 dbSNP
rs920186604 3799 dbSNP
rs137901457 3803 dbSNP
rs1388544267 3814 dbSNP
rs1319053283 3816 dbSNP
rs1463488759 3817 dbSNP
rs1279638138 3830 dbSNP
rs1391854064 3834 dbSNP
rs1163080642 3838 dbSNP
rs993682807 3839 dbSNP
rs1471592671 3840 dbSNP
rs1026370035 3842 dbSNP
rs1374494542 3844 dbSNP
rs1188630387 3859 dbSNP
rs1448279351 3871 dbSNP
rs982789528 3872 dbSNP
rs1195367891 3873 dbSNP
rs1237539344 3883 dbSNP
rs952112481 3888 dbSNP
rs1288845783 3893 dbSNP
rs1006351865 3900 dbSNP
rs1207896679 3908 dbSNP
rs944111027 3910 dbSNP
rs1277121075 3912 dbSNP
rs1039568119 3923 dbSNP
rs899632685 3924 dbSNP
rs548693360 3925 dbSNP
rs959666656 3927 dbSNP
rs540135778 3929 dbSNP
rs1332225948 3932 dbSNP
rs1323296375 3953 dbSNP
rs143468844 3954 dbSNP
rs991404436 3955 dbSNP
rs917173601 3959 dbSNP
rs1168771354 3965 dbSNP
rs1265258071 3966 dbSNP
rs1439484380 3969 dbSNP
rs903088530 3970 dbSNP
rs1195003392 3976 dbSNP
rs1478305097 3979 dbSNP
rs537462311 3981 dbSNP
rs1439273022 3984 dbSNP
rs769764599 3984 dbSNP
rs1233533920 3990 dbSNP
rs1415913074 3998 dbSNP
rs1206080770 4007 dbSNP
rs977232977 4009 dbSNP
rs1272544420 4022 dbSNP
rs558877901 4022 dbSNP
rs570688825 4029 dbSNP
rs895568859 4039 dbSNP
rs1012587323 4047 dbSNP
rs1274706464 4047 dbSNP
rs1352660253 4049 dbSNP
rs935750584 4053 dbSNP
rs534893503 4066 dbSNP
rs1054646417 4068 dbSNP
rs1309048606 4069 dbSNP
rs1408807365 4070 dbSNP
rs552935811 4074 dbSNP
rs1368373440 4075 dbSNP
rs1425739423 4076 dbSNP
rs910203573 4079 dbSNP
rs574281801 4086 dbSNP
rs1414612987 4089 dbSNP
rs1423861064 4097 dbSNP
rs943050823 4099 dbSNP
rs1412388744 4103 dbSNP
rs1040605156 4105 dbSNP
rs771254420 4109 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' cuUGUAUUGUGCCU--AUUGGAGa 5'
            ||| ||:|:  |  ||||||| 
Target 5' ucACAAAAUAUCUAUUUAACCUCu 3'
 		4 - 27
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000416247.2 | 3UTR | UCAUCACAAAAUAUCUAUUUAACCUCUAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
91 hsa-miR-655-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT080691 KIAA1468 KIAA1468 2 2
MIRT095086 SEC24A SEC24 homolog A, COPII coat complex component 2 4
MIRT122450 SMIM13 small integral membrane protein 13 2 2
MIRT214635 SMAD5 SMAD family member 5 2 4
MIRT268267 CCND1 cyclin D1 2 2
MIRT312418 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT329008 DSTN destrin, actin depolymerizing factor 2 2
MIRT329824 PDCD4 programmed cell death 4 2 4
MIRT389635 LRRC58 leucine rich repeat containing 58 2 6
MIRT443969 FAM198B family with sequence similarity 198 member B 2 2
MIRT444080 C12orf73 chromosome 12 open reading frame 73 2 2
MIRT444886 TMEM196 transmembrane protein 196 2 2
MIRT445506 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 4
MIRT446292 ACSL3 acyl-CoA synthetase long chain family member 3 2 2
MIRT446462 THAP1 THAP domain containing 1 2 2
MIRT446472 THUMPD3 THUMP domain containing 3 2 2
MIRT447413 MED21 mediator complex subunit 21 2 2
MIRT447491 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT448965 CDADC1 cytidine and dCMP deaminase domain containing 1 2 2
MIRT449602 INIP INTS3 and NABP interacting protein 2 2
MIRT449607 PRPF4 pre-mRNA processing factor 4 2 2
MIRT449737 TAB2 TGF-beta activated kinase 1/MAP3K7 binding protein 2 2 2
MIRT451668 KRT8 keratin 8 2 4
MIRT452424 QDPR quinoid dihydropteridine reductase 2 2
MIRT455187 AGTRAP angiotensin II receptor associated protein 2 2
MIRT456059 SLC25A28 solute carrier family 25 member 28 2 2
MIRT456488 SERAC1 serine active site containing 1 2 2
MIRT456631 ARMCX6 armadillo repeat containing, X-linked 6 2 2
MIRT459621 SLC25A33 solute carrier family 25 member 33 2 2
MIRT461162 SLC11A2 solute carrier family 11 member 2 2 4
MIRT461990 PACSIN1 protein kinase C and casein kinase substrate in neurons 1 2 2
MIRT463149 ZNF385A zinc finger protein 385A 2 4
MIRT463465 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT463801 XPOT exportin for tRNA 2 2
MIRT464010 WDR26 WD repeat domain 26 2 2
MIRT465302 TRIB1 tribbles pseudokinase 1 2 2
MIRT468837 RRM2 ribonucleotide reductase regulatory subunit M2 2 2
MIRT469132 RNF126 ring finger protein 126 2 2
MIRT469244 RHOB ras homolog family member B 2 2
MIRT472414 NCKAP1 NCK associated protein 1 2 2
MIRT472432 NCBP2 nuclear cap binding protein subunit 2 2 2
MIRT472808 MTMR12 myotubularin related protein 12 2 2
MIRT477893 DVL3 dishevelled segment polarity protein 3 2 4
MIRT477963 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT479258 CHSY1 chondroitin sulfate synthase 1 2 2
MIRT479718 CCNF cyclin F 2 2
MIRT480231 C9orf41 carnosine N-methyltransferase 1 2 2
MIRT482600 ABHD14B abhydrolase domain containing 14B 2 2
MIRT483096 TFPI tissue factor pathway inhibitor 2 2
MIRT484644 TBC1D5 TBC1 domain family member 5 2 4
MIRT488899 CLDND1 claudin domain containing 1 2 2
MIRT491954 VPS52 VPS52, GARP complex subunit 2 2
MIRT496937 LBR lamin B receptor 2 2
MIRT498546 TMEM30B transmembrane protein 30B 2 2
MIRT501778 NRBF2 nuclear receptor binding factor 2 2 6
MIRT516286 DBT dihydrolipoamide branched chain transacylase E2 2 2
MIRT516351 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT516751 ZNF100 zinc finger protein 100 2 2
MIRT517939 ZNF431 zinc finger protein 431 2 4
MIRT518295 ZNF514 zinc finger protein 514 2 4
MIRT518515 CASP10 caspase 10 2 2
MIRT519017 NOA1 nitric oxide associated 1 2 2
MIRT519171 SCO1 SCO1, cytochrome c oxidase assembly protein 2 2
MIRT519470 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT521029 SLC30A5 solute carrier family 30 member 5 2 2
MIRT521251 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT521682 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT529386 SKP1 S-phase kinase associated protein 1 2 2
MIRT545507 NAP1L1 nucleosome assembly protein 1 like 1 2 2
MIRT549655 RSL1D1 ribosomal L1 domain containing 1 2 2
MIRT551041 CTSB cathepsin B 2 4
MIRT551441 ZNF490 zinc finger protein 490 2 4
MIRT554778 RHEBP1 RHEB pseudogene 1 2 4
MIRT565793 SEC14L5 SEC14 like lipid binding 5 2 2
MIRT566727 MSL2 MSL complex subunit 2 2 2
MIRT574668 HNRNPDL heterogeneous nuclear ribonucleoprotein D like 2 2
MIRT610128 DENND5B DENN domain containing 5B 2 2
MIRT624919 FBXW2 F-box and WD repeat domain containing 2 2 2
MIRT641830 TRIM71 tripartite motif containing 71 2 2
MIRT662165 IFNAR2 interferon alpha and beta receptor subunit 2 2 2
MIRT667150 NRXN3 neurexin 3 2 2
MIRT689085 ADNP2 ADNP homeobox 2 2 2
MIRT696322 DCAF15 DDB1 and CUL4 associated factor 15 2 2
MIRT699062 SNX4 sorting nexin 4 2 2
MIRT703229 GOLGA1 golgin A1 2 2
MIRT705743 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT706087 HNRNPU heterogeneous nuclear ribonucleoprotein U 2 2
MIRT709288 MAPK8IP2 mitogen-activated protein kinase 8 interacting protein 2 2 2
MIRT711457 RNF145 ring finger protein 145 2 2
MIRT714708 PPP3CC protein phosphatase 3 catalytic subunit gamma 2 2
MIRT719871 CYP4F11 cytochrome P450 family 4 subfamily F member 11 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-655 Gefitinib approved 123631 Quantitative real-time PCR lung adenocarcinoma cells 24258346 2014 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-655 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-655 Androstenedione 6128 NSC9563 resistant cell line (MCF-7)
hsa-mir-655 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-655-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-655-5p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-655-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-655-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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