miRTarBase - #MIRT126457


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pre-miRNA Information
pre-miRNA hsa-mir-548g   
Genomic Coordinates chr4: 147344629 - 147344717
Synonyms MIRN548G, hsa-mir-548g, MIR548G
Description Homo sapiens miR-548g stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548g-5p
Sequence 15| UGCAAAAGUAAUUGCAGUUUUUG |37
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 4 - 147344700 29233923 MiREDiBase
A-to-I 7 4 - 147344697 29233923 MiREDiBase
A-to-I 16 4 - 147344688 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1428532945 1 dbSNP
rs749197968 2 dbSNP
rs1271780804 3 dbSNP
rs375562730 4 dbSNP
rs1340837915 12 dbSNP
rs1222552086 20 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ARL5B   
Synonyms ARL8
Description ADP ribosylation factor like GTPase 5B
Transcript NM_178815   
Expression
Putative miRNA Targets on ARL5B
3'UTR of ARL5B
(miRNA target sites are highlighted)		 
>ARL5B|NM_178815|3'UTR
   1 CTTTTTTGCTTGAAAGAGACTGCTCTATTTATTCTGTGACATGAACATTTTTTCCTAGTACCTTTGGCTGCTAAGGCAGC
  81 AGCATGTTTAATTTATAACAACACAAACCTCTGAGAGCAACACTTGAATCAAGTGCAGCTGAACTGGAACATAAAAGATT
 161 TTTTCTTAACTTTTTTTTTTTAACACACTAATCTTCAGTTGGATGAATGTAATGTATAACTATGTTTTCAGCAACAATTC
 241 TTCTGTTTATTCTAATTAATCAGTGACTGCCTTGTAAGAAATGTTTGTCATATGCGTGATGTCTTCTGAAATATTCTTAT
 321 AACCTTAATGACCAATTGCTTTCAATTCTTGACCAGCACTCCCTCCCAACCAGAGAATTACTGGTTTGATAGAGTAGTCT
 401 TGGAAACCATCAGGTACTGCCTGCAGACTTCTCCAGCACTAAATATATTTGTTCCCTCTATAAACCATTCATCTTTCGGA
 481 CAGAACTTACTGTAAAGAAAGAAATCTGCCTAGAGGATATATGTAAGGAAGATTCCACATCATGAGTACTTGCCTTTTAA
 561 CTTTCCCCCACATTACTGTTGAGTCATGGAATAATGTTTAAGTTGTTATTTGCATGGAAATTAAGTAGGCTGTTTATTTA
 641 TCTAAAGGAATCAAGTCCACTCTTCTGCCTGCAACATTTGTTCAAAAACTAACCAAGGTAAAATATTTATTTGAAAGCCC
 721 AACTTTGATGTTAAATATTCTTGAATAAATCTGTTATTTTAAGAATATCACATTATTCAATGCATATAAAACTATCAGAA
 801 GTTAGTAAATCATACCAGCACTAAAAATAAGACAATTGGAATATATTTTAGCATCAGTTTACAAACAACTTTATTATCAA
 881 CAGAAATTTTAGCTCTTTTCTTTGCAAGATATATCACAGCTGCTTTGGGCAGTAGCTGAAGCCGAAGTATGAACAGTCCA
 961 TTTTGTTTCTTAAAATTTGAAGTCGTGTCTGTCATAGCATTTTTACTACCAGCAGTATGTTACTTAAAAAACTACATGGC
1041 TTTCCTTGAATTTATTTGACGGTATTATGTAATAGACTTGAAACAATTGCCATCTTTGTAGTTATGCCTTGGGTTCTAAA
1121 ATGTTATAGGAAACTGCTGAATTGAATCCTAGCTTTTAGAATATTAATAGGAGACTCAAAGTTAATATTCTTAACAACTT
1201 AAAATTAAAAAAAGTCATAATCTATCAAAAGTTTATTTATTGGATGGCATTAAAACATTTTTGAGGCAGTTGTCTAATAT
1281 GAACAATAATCTAAACAATATATTCCTTAAATTAAGAGGAAAGACAAGTGTCGTATTTCGATCCTGTTTATTCAAATGTG
1361 TGATTTTGCTGAAATGAAAGGGATAAAATGAATACTTAGAGAATAATACTTCATTTTTGCAGTACTTTTTAATTTTGATA
1441 AAAAAGATACAAAGTTCATAATATCAAAATATGTGTTCAAAATTGGTATTTTAATTTTAATATTTTTGTAAGTTGATTTA
1521 AATTTTGCTCTTTTTTCAGGTGTGCTTGGTTTATTATATTTAGTCAAGTTAATTTAGTCGAATGTGGTAACATTTTTCTG
1601 ATTTATCTTTAGTTGGAGCACACCCTTGAACTGAACAGTGGCCAAAGGAAAGCTTTCTGGGCTTTGGAAAGTAGTTGTTT
1681 AACTTTGTTTTAAGCCGTTTTCTTAGTGATTCTGTATCAAGTAGAGGATAAGTGTAGTTTAACTTAGTTTTTAATATAAC
1761 CCATAATCAAGAACATGAGCGAAAAGCAGACATAAATCGATATGGATGGTTTGTGGTGTGTGTGGGATGTGGGGGAATTA
1841 AGAAAATGCCATTTACCTAAGCACAGTTTGCCTGAATTTCTGCTTGGTTGTGTTGTTTACCGTAAGTACTGAGGGTAGTT
1921 TCCCTAAGTCTGTCCTGAGAAAAAGCATACTTAGTACTCCTGTATTTGTTCTTATGAAATGACTATCTGCCTTCTTGTAT
2001 CTAGTAAGATTGGCTGGCTCAATTTTCTTCTGTCAAATTATATGGTTATTTTTTATATTACCACATCAGCATTATATTAA
2081 AAGTGTTTTTAATAGTTGATTGTATTTTGCCAACTACTAGTATAGACTCAAATTTGCTATTTAATTTTTAAAATACAATT
2161 TATTTTGTAAATCCTTTAAAAAATATTTGGTTAGTTTTGGATTAGAAATGATTTATGTTAGCCATGTGTTGAAGATGAAA
2241 TTGGCATCAGTGTAGACGGTGCTGATTGGGAAAAGTTCATGATTAGGAAATTCATGTAAGACTTTTTAAGAGTATTTTTT
2321 AGGTTTTCACTCAATCTTTCCTGTCACAGTAACGTGAAAACTGATTATTCTTTACTCCAAGAGAATGTTTTAACCCAAGC
2401 AAGTATCTAATACTAGAGCATTGGTTCTGACATTCATTGTAAATCAGTGAACTGTAAGATACTGTCTAAAAAATGTACAT
2481 TTGTAATTAGTGCCTTTATTCATATTTTGAAATAAGTTCTTAGTTTTATATTATACCTGTTCTTTAGAAGTCATGTTAGC
2561 AGCTAATTATTTCAGTGATGAAATAATTTGTGTTTTATATCCCCCTTCACCTCCATGTATTGGTTAGCACAGTTTATAGT
2641 AAGTGAAAAGCAAGGGACCCACCTACATTACCTTCAGGAGACTGTTCTACCTTTTAATTTGAAAACAAGGAAATTAAATT
2721 TTAACAGAAATCTTTTAAGTATGTTATAACCAAAGTGTTCAATTATCCTTGCAAGTTCAAATACAGCATTTTTCT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' guUUUUGACGUUAA-UGAAAACGu 5'
            |:||:  :| || |:|||||| 
Target 5' agAGAATAATACTTCATTTTTGCa 3'
 1398 - 1421 145.00 -6.90
2 
miRNA  3' guuuUUGACGUUAAUGAAAACGu 5'
              ||:| :|| ||:|||||: 
Target 5' ttttAATTTTAA-TATTTTTGTa 3'
 1489 - 1510 134.00 -7.50
3 
miRNA  3' guUUUUGACGUUA-AUGAAAACGu 5'
            | ||:|| ||| ||:||| || 
Target 5' agACAATTGGAATATATTTTAGCa 3'
 830 - 853 129.00 -9.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN2525727 35 COSMIC
COSN31601441 42 COSMIC
COSN13265615 48 COSMIC
COSN30514858 67 COSMIC
COSN31599445 88 COSMIC
COSN30144444 97 COSMIC
COSN31504907 100 COSMIC
COSN4891898 111 COSMIC
COSN30174357 114 COSMIC
COSN30114030 158 COSMIC
COSN30177343 158 COSMIC
COSN30115296 163 COSMIC
COSN31574452 175 COSMIC
COSN18734446 182 COSMIC
COSN30119533 206 COSMIC
COSN31554806 208 COSMIC
COSN26642562 233 COSMIC
COSN31513837 241 COSMIC
COSN24303516 296 COSMIC
COSN26194544 398 COSMIC
COSN1480518 515 COSMIC
COSN29951144 680 COSMIC
COSN28196098 814 COSMIC
COSN31486793 832 COSMIC
COSN31596880 944 COSMIC
COSN30540889 1081 COSMIC
COSN23522161 1178 COSMIC
COSN21985646 1208 COSMIC
COSN1480519 1317 COSMIC
COSN23528724 1410 COSMIC
COSN17701274 1728 COSMIC
COSN31590126 1781 COSMIC
COSN1480520 1797 COSMIC
COSN28819903 1816 COSMIC
COSN26548898 1887 COSMIC
COSN31491117 1912 COSMIC
COSN21625992 1972 COSMIC
COSN31532692 1977 COSMIC
COSN16664306 2017 COSMIC
COSN16666132 2018 COSMIC
COSN16261817 2036 COSMIC
COSN31585741 2148 COSMIC
COSN31568857 2198 COSMIC
COSN22516050 2350 COSMIC
COSN31521707 2432 COSMIC
COSN28744171 2494 COSMIC
COSN15218278 2543 COSMIC
COSN28722134 2620 COSMIC
COSN31583172 2645 COSMIC
COSN6064195 3034 COSMIC
COSN28201365 3064 COSMIC
COSN5282083 3087 COSMIC
COSN1480521 3149 COSMIC
COSN1480522 3655 COSMIC
COSN15687461 3765 COSMIC
COSN5282084 3920 COSMIC
COSN17464424 3971 COSMIC
COSN1480523 3995 COSMIC
COSN19035807 4398 COSMIC
COSN27773668 4586 COSMIC
COSN26500390 4695 COSMIC
COSN7474162 4785 COSMIC
COSN6064197 5105 COSMIC
COSN22676280 5118 COSMIC
COSN21397128 5182 COSMIC
COSN27867532 5473 COSMIC
COSN5282085 5633 COSMIC
COSN28274099 6049 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs768840498 2 dbSNP
rs140234683 3 dbSNP
rs1433372555 6 dbSNP
rs370695851 9 dbSNP
rs768150470 12 dbSNP
rs767357213 20 dbSNP
rs773142983 21 dbSNP
rs200267373 26 dbSNP
rs766235830 28 dbSNP
rs202164122 35 dbSNP
rs1442128995 37 dbSNP
rs1162713847 38 dbSNP
rs1356355506 41 dbSNP
rs367626401 42 dbSNP
rs752156025 44 dbSNP
rs909164493 45 dbSNP
rs544391026 46 dbSNP
rs781576345 47 dbSNP
rs778522795 48 dbSNP
rs1356550099 49 dbSNP
rs987711401 54 dbSNP
rs750332339 55 dbSNP
rs1192755743 63 dbSNP
rs564385949 76 dbSNP
rs1442054373 78 dbSNP
rs188969123 85 dbSNP
rs535082711 92 dbSNP
rs1038704954 97 dbSNP
rs1206813183 97 dbSNP
rs1485511149 112 dbSNP
rs1260733509 116 dbSNP
rs949128399 120 dbSNP
rs1310026947 123 dbSNP
rs1302297226 126 dbSNP
rs898857869 131 dbSNP
rs755971062 137 dbSNP
rs1340312721 139 dbSNP
rs1373732874 148 dbSNP
rs1046208087 152 dbSNP
rs867409191 158 dbSNP
rs1197814736 165 dbSNP
rs930881310 165 dbSNP
rs1053663714 171 dbSNP
rs902244405 171 dbSNP
rs893391424 176 dbSNP
rs1012219294 177 dbSNP
rs45566440 185 dbSNP
rs900541320 188 dbSNP
rs1427808681 189 dbSNP
rs572065005 190 dbSNP
rs1003676663 192 dbSNP
rs1057053361 199 dbSNP
rs539556142 200 dbSNP
rs1030414246 213 dbSNP
rs1171520035 214 dbSNP
rs1211228871 215 dbSNP
rs1349616307 217 dbSNP
rs1295768207 220 dbSNP
rs1227190385 221 dbSNP
rs1012314761 223 dbSNP
rs1298429032 225 dbSNP
rs776840031 229 dbSNP
rs1354969801 232 dbSNP
rs1313578906 235 dbSNP
rs1436747318 238 dbSNP
rs1368981026 248 dbSNP
rs1376898080 254 dbSNP
rs968055089 255 dbSNP
rs1004725315 257 dbSNP
rs1016469740 258 dbSNP
rs1473932087 259 dbSNP
rs1256124465 263 dbSNP
rs1188048640 275 dbSNP
rs1272067189 282 dbSNP
rs963342514 282 dbSNP
rs1390317530 287 dbSNP
rs1195565028 295 dbSNP
rs570744792 296 dbSNP
rs1031547090 297 dbSNP
rs554907790 300 dbSNP
rs557548208 312 dbSNP
rs923722871 313 dbSNP
rs1348835870 316 dbSNP
rs748306549 317 dbSNP
rs1390599439 319 dbSNP
rs576234767 321 dbSNP
rs576356491 325 dbSNP
rs749328983 328 dbSNP
rs192086217 330 dbSNP
rs964437383 334 dbSNP
rs368759340 336 dbSNP
rs1475928676 344 dbSNP
rs947568503 349 dbSNP
rs184135456 351 dbSNP
rs778075547 352 dbSNP
rs1253021585 354 dbSNP
rs147084208 355 dbSNP
rs1334714793 364 dbSNP
rs1274407393 365 dbSNP
rs138497131 368 dbSNP
rs766796661 370 dbSNP
rs997508124 375 dbSNP
rs1239961769 378 dbSNP
rs560568630 379 dbSNP
rs1051679899 390 dbSNP
rs1047431893 398 dbSNP
rs886525974 402 dbSNP
rs908097282 404 dbSNP
rs1016111248 407 dbSNP
rs144065833 408 dbSNP
rs757313104 413 dbSNP
rs1056622800 414 dbSNP
rs895342819 418 dbSNP
rs1464830330 420 dbSNP
rs1012068736 424 dbSNP
rs1470287933 432 dbSNP
rs1365206787 434 dbSNP
rs773925032 435 dbSNP
rs1023594698 443 dbSNP
rs1192120573 444 dbSNP
rs781163161 446 dbSNP
rs970600458 454 dbSNP
rs981777069 455 dbSNP
rs923580135 462 dbSNP
rs188486034 465 dbSNP
rs1283567541 472 dbSNP
rs746002775 478 dbSNP
rs552685326 479 dbSNP
rs1386050168 481 dbSNP
rs989666068 482 dbSNP
rs1293956945 483 dbSNP
rs41306326 505 dbSNP
rs1442932985 507 dbSNP
rs1343400787 511 dbSNP
rs1443641454 513 dbSNP
rs1043755892 516 dbSNP
rs1400833186 517 dbSNP
rs564413124 520 dbSNP
rs1326074715 521 dbSNP
rs1171443256 527 dbSNP
rs565219193 527 dbSNP
rs999457775 533 dbSNP
rs914981243 534 dbSNP
rs1031431674 535 dbSNP
rs1396007900 538 dbSNP
rs1195899798 540 dbSNP
rs1474690186 543 dbSNP
rs1242065212 544 dbSNP
rs955967275 547 dbSNP
rs947597104 552 dbSNP
rs1332796655 554 dbSNP
rs531796051 562 dbSNP
rs1039171032 563 dbSNP
rs549912994 565 dbSNP
rs568434246 573 dbSNP
rs933533509 574 dbSNP
rs1280735927 579 dbSNP
rs1220764856 584 dbSNP
rs1359756061 589 dbSNP
rs556684317 592 dbSNP
rs1018779718 594 dbSNP
rs1430820586 602 dbSNP
rs964575608 603 dbSNP
rs1327743430 605 dbSNP
rs974583284 608 dbSNP
rs1259479359 609 dbSNP
rs1175867817 616 dbSNP
rs1477270958 623 dbSNP
rs1419383372 632 dbSNP
rs920304692 633 dbSNP
rs1188271376 637 dbSNP
rs535717272 653 dbSNP
rs1419323441 654 dbSNP
rs180984404 659 dbSNP
rs35209518 663 dbSNP
rs886407530 663 dbSNP
rs1255412801 667 dbSNP
rs186183147 669 dbSNP
rs1038214375 673 dbSNP
rs907562429 674 dbSNP
rs939601025 679 dbSNP
rs1287458259 681 dbSNP
rs1305620818 684 dbSNP
rs371227656 695 dbSNP
rs6482597 696 dbSNP
rs1290859787 698 dbSNP
rs1413654668 700 dbSNP
rs1315049330 704 dbSNP
rs948183834 706 dbSNP
rs1440460569 715 dbSNP
rs1354376279 716 dbSNP
rs1353572024 731 dbSNP
rs1412096343 742 dbSNP
rs1416369477 753 dbSNP
rs1164281639 758 dbSNP
rs1232765501 760 dbSNP
rs4310518 767 dbSNP
rs147330353 768 dbSNP
rs1241146985 772 dbSNP
rs559127821 773 dbSNP
rs1258712527 779 dbSNP
rs1204996041 782 dbSNP
rs1458997411 783 dbSNP
rs1052425863 787 dbSNP
rs41305695 795 dbSNP
rs1008811062 799 dbSNP
rs34616090 799 dbSNP
rs1221657842 812 dbSNP
rs1372199876 816 dbSNP
rs1299055727 817 dbSNP
rs1019246138 819 dbSNP
rs956599611 820 dbSNP
rs989161519 822 dbSNP
rs1484520063 825 dbSNP
rs900425617 827 dbSNP
rs995988674 828 dbSNP
rs368485750 833 dbSNP
rs769018226 840 dbSNP
rs1418681638 841 dbSNP
rs555565479 844 dbSNP
rs1409015347 852 dbSNP
rs573863651 858 dbSNP
rs1441351907 861 dbSNP
rs1251055259 864 dbSNP
rs983631002 872 dbSNP
rs1213050644 873 dbSNP
rs1468868292 874 dbSNP
rs755687633 875 dbSNP
rs922078226 876 dbSNP
rs1213065699 878 dbSNP
rs1014590238 881 dbSNP
rs960617123 884 dbSNP
rs1307319700 887 dbSNP
rs1380035849 892 dbSNP
rs1242762704 894 dbSNP
rs1303149493 898 dbSNP
rs988157950 898 dbSNP
rs1442198055 904 dbSNP
rs1393553275 908 dbSNP
rs1287139840 910 dbSNP
rs991840812 912 dbSNP
rs1345979938 913 dbSNP
rs1435736349 917 dbSNP
rs1175695751 932 dbSNP
rs1392971541 933 dbSNP
rs1373852537 936 dbSNP
rs137864900 944 dbSNP
rs948318827 952 dbSNP
rs1184226313 955 dbSNP
rs1485300082 965 dbSNP
rs940726455 966 dbSNP
rs979554735 974 dbSNP
rs925476504 981 dbSNP
rs1037698615 985 dbSNP
rs899251314 986 dbSNP
rs540392167 988 dbSNP
rs773941107 993 dbSNP
rs1343418278 1000 dbSNP
rs559383949 1000 dbSNP
rs761400642 1012 dbSNP
rs12571687 1016 dbSNP
rs1294104616 1017 dbSNP
rs1393015534 1026 dbSNP
rs1307031461 1045 dbSNP
rs1362819042 1051 dbSNP
rs1300130685 1060 dbSNP
rs545835350 1061 dbSNP
rs1234734602 1062 dbSNP
rs1052985952 1063 dbSNP
rs1282288731 1075 dbSNP
rs1379295067 1076 dbSNP
rs753831991 1081 dbSNP
rs943999115 1087 dbSNP
rs1261733879 1088 dbSNP
rs569979424 1091 dbSNP
rs906393788 1095 dbSNP
rs1039726831 1098 dbSNP
rs1256424589 1106 dbSNP
rs772572706 1108 dbSNP
rs1031377797 1113 dbSNP
rs1250114741 1114 dbSNP
rs900391663 1117 dbSNP
rs1308602411 1135 dbSNP
rs564605600 1147 dbSNP
rs1280126305 1149 dbSNP
rs531663990 1150 dbSNP
rs1238119583 1154 dbSNP
rs1455127764 1156 dbSNP
rs1396384247 1159 dbSNP
rs1010998426 1168 dbSNP
rs1296248167 1169 dbSNP
rs1461387356 1171 dbSNP
rs879460979 1177 dbSNP
rs1393697125 1178 dbSNP
rs34467070 1178 dbSNP
rs575495287 1188 dbSNP
rs887649858 1188 dbSNP
rs757532893 1190 dbSNP
rs1187888338 1191 dbSNP
rs1443800105 1193 dbSNP
rs963780799 1199 dbSNP
rs1195616520 1200 dbSNP
rs1481234201 1202 dbSNP
rs1260593121 1203 dbSNP
rs1029351994 1207 dbSNP
rs1231525750 1207 dbSNP
rs954898426 1207 dbSNP
rs975102101 1207 dbSNP
rs549980431 1208 dbSNP
rs561981675 1210 dbSNP
rs1329151653 1212 dbSNP
rs1376059488 1213 dbSNP
rs1015049151 1216 dbSNP
rs940917795 1217 dbSNP
rs529428944 1218 dbSNP
rs1459397983 1219 dbSNP
rs1441600200 1220 dbSNP
rs1393023154 1221 dbSNP
rs1163334709 1224 dbSNP
rs1305330312 1225 dbSNP
rs973831726 1227 dbSNP
rs920566970 1229 dbSNP
rs141249090 1232 dbSNP
rs1218241796 1237 dbSNP
rs1440771421 1238 dbSNP
rs189044684 1239 dbSNP
rs566233438 1243 dbSNP
rs149458922 1247 dbSNP
rs551044851 1249 dbSNP
rs781190794 1252 dbSNP
rs1469277081 1253 dbSNP
rs939217896 1257 dbSNP
rs1279228464 1263 dbSNP
rs969592924 1273 dbSNP
rs1052242822 1274 dbSNP
rs979690903 1278 dbSNP
rs892382646 1286 dbSNP
rs528217829 1287 dbSNP
rs1370197561 1290 dbSNP
rs925445375 1294 dbSNP
rs569790400 1296 dbSNP
rs1406644071 1298 dbSNP
rs182436031 1307 dbSNP
rs756535384 1307 dbSNP
rs1419944649 1312 dbSNP
rs1421930188 1312 dbSNP
rs988332484 1317 dbSNP
rs371060934 1325 dbSNP
rs1247856294 1326 dbSNP
rs778868745 1326 dbSNP
rs1201048001 1330 dbSNP
rs143909542 1333 dbSNP
rs567513181 1334 dbSNP
rs955116206 1341 dbSNP
rs148636273 1344 dbSNP
rs1287842258 1356 dbSNP
rs1370126195 1358 dbSNP
rs1275435378 1361 dbSNP
rs753830930 1365 dbSNP
rs186294227 1368 dbSNP
rs887703137 1369 dbSNP
rs765147401 1370 dbSNP
rs755249469 1373 dbSNP
rs920829247 1376 dbSNP
rs1216452493 1377 dbSNP
rs1276990944 1380 dbSNP
rs1426476876 1382 dbSNP
rs1474718919 1383 dbSNP
rs371450710 1400 dbSNP
rs928043213 1402 dbSNP
rs1216053452 1408 dbSNP
rs1208460357 1419 dbSNP
rs1311450750 1420 dbSNP
rs1288354776 1425 dbSNP
rs939414490 1426 dbSNP
rs1220812752 1433 dbSNP
rs1337408276 1440 dbSNP
rs896209851 1443 dbSNP
rs1013358659 1446 dbSNP
rs1451335408 1447 dbSNP
rs1023252918 1450 dbSNP
rs751766911 1453 dbSNP
rs1244235781 1457 dbSNP
rs1485004223 1458 dbSNP
rs1000497169 1461 dbSNP
rs1414535786 1463 dbSNP
rs781607722 1465 dbSNP
rs956997431 1467 dbSNP
rs1418619624 1472 dbSNP
rs1476232830 1473 dbSNP
rs1282229341 1474 dbSNP
rs946527007 1483 dbSNP
rs748156587 1484 dbSNP
rs1478865982 1488 dbSNP
rs1415940280 1489 dbSNP
rs1187424091 1491 dbSNP
rs1483704094 1502 dbSNP
rs1404757611 1503 dbSNP
rs1212006049 1527 dbSNP
rs1435990209 1529 dbSNP
rs750459739 1530 dbSNP
rs1318687343 1531 dbSNP
rs1319455424 1540 dbSNP
rs1346793789 1541 dbSNP
rs1397692556 1546 dbSNP
rs1227314161 1552 dbSNP
rs899756480 1552 dbSNP
rs143309507 1553 dbSNP
rs1297233627 1560 dbSNP
rs1286270626 1566 dbSNP
rs975534360 1581 dbSNP
rs996502124 1586 dbSNP
rs921259001 1588 dbSNP
rs1467658207 1589 dbSNP
rs1050684152 1592 dbSNP
rs1424568310 1593 dbSNP
rs190816722 1593 dbSNP
rs557694096 1594 dbSNP
rs1416297606 1604 dbSNP
rs1468472592 1614 dbSNP
rs1281978501 1617 dbSNP
rs1003938343 1622 dbSNP
rs1048443926 1623 dbSNP
rs1270683703 1625 dbSNP
rs1204796925 1626 dbSNP
rs1220214211 1637 dbSNP
rs1321925030 1638 dbSNP
rs539937518 1647 dbSNP
rs1286724434 1652 dbSNP
rs1376552108 1653 dbSNP
rs576014644 1655 dbSNP
rs36103186 1657 dbSNP
rs1310457696 1660 dbSNP
rs780476917 1668 dbSNP
rs1449602000 1669 dbSNP
rs995002084 1677 dbSNP
rs1292997642 1697 dbSNP
rs146233769 1698 dbSNP
rs749814311 1703 dbSNP
rs1157267356 1707 dbSNP
rs1258507848 1708 dbSNP
rs1400352913 1710 dbSNP
rs969597338 1715 dbSNP
rs139319470 1719 dbSNP
rs1036584418 1726 dbSNP
rs896356863 1727 dbSNP
rs1441411381 1729 dbSNP
rs1251115789 1731 dbSNP
rs1197772865 1733 dbSNP
rs1488558945 1735 dbSNP
rs1237015873 1736 dbSNP
rs1013279016 1738 dbSNP
rs529534397 1749 dbSNP
rs768965176 1752 dbSNP
rs1472412197 1761 dbSNP
rs1159094658 1763 dbSNP
rs373894269 1764 dbSNP
rs1301268156 1772 dbSNP
rs1387416395 1773 dbSNP
rs1369743671 1776 dbSNP
rs779113093 1779 dbSNP
rs534729367 1781 dbSNP
rs1031982350 1788 dbSNP
rs1361432053 1792 dbSNP
rs554358799 1793 dbSNP
rs559999395 1799 dbSNP
rs1009846653 1800 dbSNP
rs1433706220 1803 dbSNP
rs1416312729 1811 dbSNP
rs1268792129 1814 dbSNP
rs1331598973 1815 dbSNP
rs12098599 1816 dbSNP
rs182995710 1819 dbSNP
rs1281789590 1823 dbSNP
rs1219245293 1827 dbSNP
rs1484930970 1829 dbSNP
rs965608869 1834 dbSNP
rs975587994 1836 dbSNP
rs1028388327 1838 dbSNP
rs952786015 1839 dbSNP
rs1050732434 1849 dbSNP
rs569695125 1852 dbSNP
rs984107664 1856 dbSNP
rs530515700 1860 dbSNP
rs1351894366 1868 dbSNP
rs1239863972 1873 dbSNP
rs1281579389 1880 dbSNP
rs549139884 1883 dbSNP
rs1350282104 1899 dbSNP
rs939664179 1903 dbSNP
rs1036822148 1914 dbSNP
rs908561847 1925 dbSNP
rs1399712976 1954 dbSNP
rs1302078785 1955 dbSNP
rs1438493406 1959 dbSNP
rs1379350502 1965 dbSNP
rs1167885743 1976 dbSNP
rs1477249538 1979 dbSNP
rs1423886227 1980 dbSNP
rs1182351020 1984 dbSNP
rs1195327331 1984 dbSNP
rs940599447 1986 dbSNP
rs1255854405 1988 dbSNP
rs898233590 1991 dbSNP
rs773552074 1996 dbSNP
rs41282212 1998 dbSNP
rs1318767485 2000 dbSNP
rs1280187855 2001 dbSNP
rs905463833 2015 dbSNP
rs917832517 2017 dbSNP
rs1395512346 2024 dbSNP
rs949184120 2030 dbSNP
rs1044896805 2037 dbSNP
rs904924614 2038 dbSNP
rs1170479121 2042 dbSNP
rs185826194 2043 dbSNP
rs1035666617 2044 dbSNP
rs1329301061 2044 dbSNP
rs1330379276 2046 dbSNP
rs1400311243 2049 dbSNP
rs960759901 2054 dbSNP
rs144127521 2068 dbSNP
rs1021072854 2069 dbSNP
rs1188640544 2072 dbSNP
rs747522053 2075 dbSNP
rs1446750435 2078 dbSNP
rs571531515 2081 dbSNP
rs576707530 2095 dbSNP
rs1178503597 2100 dbSNP
rs1260021741 2105 dbSNP
rs1211957747 2108 dbSNP
rs1355872393 2110 dbSNP
rs538592905 2111 dbSNP
rs1245231392 2114 dbSNP
rs1019829881 2123 dbSNP
rs921072198 2125 dbSNP
rs901442924 2139 dbSNP
rs1255628892 2150 dbSNP
rs996988349 2151 dbSNP
rs1332763886 2152 dbSNP
rs1403135589 2152 dbSNP
rs1340086719 2153 dbSNP
rs1197615415 2155 dbSNP
rs1389558758 2157 dbSNP
rs191326091 2164 dbSNP
rs1256310847 2186 dbSNP
rs1028522755 2189 dbSNP
rs1459133387 2194 dbSNP
rs952753465 2211 dbSNP
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rs1016001686 2223 dbSNP
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rs577967908 2251 dbSNP
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rs1008702514 2991 dbSNP
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rs1210898680 3000 dbSNP
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rs1296002510 3023 dbSNP
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rs535007561 3310 dbSNP
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rs999931960 3506 dbSNP
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rs1296065916 4000 dbSNP
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rs969313556 4020 dbSNP
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rs1045966771 5121 dbSNP
rs1423257244 5126 dbSNP
rs1407520880 5129 dbSNP
rs11015592 5132 dbSNP
rs761612374 5135 dbSNP
rs1178293653 5141 dbSNP
rs1459460277 5146 dbSNP
rs1376023106 5149 dbSNP
rs1158610889 5151 dbSNP
rs1468133663 5155 dbSNP
rs139264861 5156 dbSNP
rs1252231414 5163 dbSNP
rs766523614 5171 dbSNP
rs1489834689 5173 dbSNP
rs1268017608 5174 dbSNP
rs951325759 5180 dbSNP
rs1210364032 5184 dbSNP
rs1357800721 5190 dbSNP
rs191441582 5198 dbSNP
rs117648795 5204 dbSNP
rs1329484654 5209 dbSNP
rs555842451 5214 dbSNP
rs371717981 5218 dbSNP
rs1403550610 5227 dbSNP
rs1011367442 5228 dbSNP
rs959828270 5230 dbSNP
rs991302747 5235 dbSNP
rs79559137 5237 dbSNP
rs1324711786 5243 dbSNP
rs1017827552 5251 dbSNP
rs1296305572 5257 dbSNP
rs964563301 5267 dbSNP
rs41282232 5276 dbSNP
rs776906656 5279 dbSNP
rs1174556281 5282 dbSNP
rs1479295411 5286 dbSNP
rs1376887332 5288 dbSNP
rs947153708 5293 dbSNP
rs1219470929 5304 dbSNP
rs1302713003 5308 dbSNP
rs1320801290 5312 dbSNP
rs950399733 5313 dbSNP
rs1042712369 5315 dbSNP
rs1223368447 5319 dbSNP
rs924311617 5327 dbSNP
rs1320699046 5333 dbSNP
rs1197103266 5334 dbSNP
rs1269564790 5339 dbSNP
rs1232709087 5350 dbSNP
rs1488904137 5354 dbSNP
rs560326993 5357 dbSNP
rs765408336 5358 dbSNP
rs1236044967 5359 dbSNP
rs541623996 5365 dbSNP
rs1317707415 5368 dbSNP
rs1051977094 5370 dbSNP
rs527471406 5371 dbSNP
rs890729257 5384 dbSNP
rs181400197 5392 dbSNP
rs1469502307 5401 dbSNP
rs908962781 5405 dbSNP
rs1344241161 5406 dbSNP
rs941739751 5414 dbSNP
rs1038563583 5417 dbSNP
rs1424245416 5423 dbSNP
rs753112959 5426 dbSNP
rs57264737 5427 dbSNP
rs1230174882 5434 dbSNP
rs1249386326 5439 dbSNP
rs1201336748 5449 dbSNP
rs1007702171 5450 dbSNP
rs1441540201 5453 dbSNP
rs916095068 5461 dbSNP
rs1202609214 5465 dbSNP
rs758897387 5466 dbSNP
rs563518713 5473 dbSNP
rs1168032137 5492 dbSNP
rs1367383051 5497 dbSNP
rs995368509 5498 dbSNP
rs907445370 5499 dbSNP
rs1341368468 5503 dbSNP
rs768254986 5516 dbSNP
rs1724019 5518 dbSNP
rs934670573 5520 dbSNP
rs1053010221 5526 dbSNP
rs564366029 5534 dbSNP
rs1167845323 5537 dbSNP
rs1430361741 5545 dbSNP
rs144089142 5552 dbSNP
rs1181263926 5557 dbSNP
rs1342910402 5561 dbSNP
rs1237632573 5562 dbSNP
rs776203735 5571 dbSNP
rs950684504 5571 dbSNP
rs1017669729 5579 dbSNP
rs550949937 5584 dbSNP
rs1274397372 5587 dbSNP
rs900371490 5589 dbSNP
rs186160332 5595 dbSNP
rs41282234 5596 dbSNP
rs1263891234 5599 dbSNP
rs950573114 5603 dbSNP
rs1724020 5607 dbSNP
rs148685029 5611 dbSNP
rs959961110 5616 dbSNP
rs113606866 5617 dbSNP
rs182152195 5618 dbSNP
rs187869637 5619 dbSNP
rs375562606 5622 dbSNP
rs537468977 5625 dbSNP
rs1405723057 5634 dbSNP
rs1166736923 5642 dbSNP
rs1363295679 5647 dbSNP
rs1423657019 5649 dbSNP
rs1267316132 5653 dbSNP
rs780984320 5656 dbSNP
rs1221482291 5661 dbSNP
rs934890922 5664 dbSNP
rs1292150144 5667 dbSNP
rs11540309 5668 dbSNP
rs893161313 5670 dbSNP
rs766282686 5673 dbSNP
rs755552107 5674 dbSNP
rs912132677 5682 dbSNP
rs943625577 5684 dbSNP
rs1291670381 5686 dbSNP
rs1039562540 5695 dbSNP
rs574332959 5700 dbSNP
rs900548837 5704 dbSNP
rs1325000258 5710 dbSNP
rs1230386048 5711 dbSNP
rs1313427843 5719 dbSNP
rs752804001 5724 dbSNP
rs1159464660 5725 dbSNP
rs1039199899 5728 dbSNP
rs1473739921 5729 dbSNP
rs1427678145 5737 dbSNP
rs899363116 5747 dbSNP
rs1191075613 5753 dbSNP
rs930835184 5755 dbSNP
rs1213819659 5758 dbSNP
rs1288167630 5765 dbSNP
rs767754084 5772 dbSNP
rs1048237638 5776 dbSNP
rs886545161 5780 dbSNP
rs756345164 5784 dbSNP
rs1218541820 5799 dbSNP
rs1241440178 5801 dbSNP
rs1368299079 5804 dbSNP
rs1473106918 5810 dbSNP
rs1004834149 5813 dbSNP
rs1387285836 5815 dbSNP
rs1320763786 5820 dbSNP
rs142238258 5823 dbSNP
rs1016172145 5826 dbSNP
rs1003470603 5827 dbSNP
rs1175850642 5830 dbSNP
rs918271058 5840 dbSNP
rs1035012961 5841 dbSNP
rs1427940623 5847 dbSNP
rs1185288222 5848 dbSNP
rs151239051 5850 dbSNP
rs963080992 5853 dbSNP
rs1460181360 5857 dbSNP
rs1254020532 5860 dbSNP
rs12782882 5863 dbSNP
rs1023814456 5866 dbSNP
rs753921802 5868 dbSNP
rs1158883494 5870 dbSNP
rs1226127674 5871 dbSNP
rs970464392 5873 dbSNP
rs1297755354 5883 dbSNP
rs768583507 5889 dbSNP
rs1436792880 5890 dbSNP
rs1398442199 5895 dbSNP
rs1302626413 5898 dbSNP
rs190978302 5900 dbSNP
rs968924216 5901 dbSNP
rs978635110 5905 dbSNP
rs982036307 5909 dbSNP
rs928836851 5910 dbSNP
rs564377921 5925 dbSNP
rs1190672996 5930 dbSNP
rs774278222 5935 dbSNP
rs987113546 5938 dbSNP
rs528072276 5939 dbSNP
rs1382502843 5946 dbSNP
rs947381789 5948 dbSNP
rs1257566630 5950 dbSNP
rs1202912472 5964 dbSNP
rs1038993749 5974 dbSNP
rs748784608 5980 dbSNP
rs11540308 5981 dbSNP
rs1052271220 5988 dbSNP
rs776812141 5994 dbSNP
rs1348889651 5998 dbSNP
rs139894908 5999 dbSNP
rs1381766184 6001 dbSNP
rs930784291 6004 dbSNP
rs1279479164 6006 dbSNP
rs867417264 6007 dbSNP
rs899048863 6013 dbSNP
rs868070881 6015 dbSNP
rs530021886 6021 dbSNP
rs1205513781 6025 dbSNP
rs1240972425 6027 dbSNP
rs759842646 6028 dbSNP
rs886512512 6029 dbSNP
rs779341780 6037 dbSNP
rs1023276862 6039 dbSNP
rs970896279 6043 dbSNP
rs1482681671 6047 dbSNP
rs548710875 6049 dbSNP
rs111436302 6052 dbSNP
rs956241493 6055 dbSNP
rs1264399013 6056 dbSNP
rs527889282 6057 dbSNP
rs988904125 6063 dbSNP
rs1323210050 6065 dbSNP
rs1286833127 6072 dbSNP
rs1425288139 6076 dbSNP
rs914826484 6078 dbSNP
rs1335333250 6081 dbSNP
rs376705082 6084 dbSNP
rs1447977552 6088 dbSNP
rs570825633 6091 dbSNP
rs1410110448 6094 dbSNP
rs1012259301 6095 dbSNP
rs1158728273 6104 dbSNP
rs1023279519 6105 dbSNP
rs1472105980 6111 dbSNP
rs1412462108 6113 dbSNP
rs1449831227 6131 dbSNP
rs904450457 6131 dbSNP
rs1266046116 6135 dbSNP
rs538179356 6141 dbSNP
rs1209973342 6146 dbSNP
rs1489182210 6147 dbSNP
rs975159188 6149 dbSNP
rs1000421865 6153 dbSNP
rs1265778004 6157 dbSNP
rs1207748282 6159 dbSNP
rs1330185283 6160 dbSNP
rs1333835637 6161 dbSNP
rs921987096 6169 dbSNP
rs79974970 6170 dbSNP
rs955772339 6171 dbSNP
rs987252553 6174 dbSNP
rs1018712787 6178 dbSNP
rs964689855 6180 dbSNP
rs775588914 6184 dbSNP
rs762954164 6187 dbSNP
rs764626304 6192 dbSNP
rs568092394 6194 dbSNP
rs1476991689 6196 dbSNP
rs983565419 6196 dbSNP
rs908092811 6200 dbSNP
rs1376938877 6213 dbSNP
rs1037501038 6217 dbSNP
rs1245692317 6218 dbSNP
rs752176141 6227 dbSNP
rs1187517848 6231 dbSNP
rs939433225 6237 dbSNP
rs762251611 6239 dbSNP
rs1056441111 6250 dbSNP
rs916668081 6254 dbSNP
rs1199011024 6260 dbSNP
rs535093672 6261 dbSNP
rs768039192 6263 dbSNP
rs1297009713 6265 dbSNP
rs1435667403 6274 dbSNP
rs1367691205 6277 dbSNP
rs1180685961 6287 dbSNP
rs188706260 6299 dbSNP
rs1246723559 6304 dbSNP
rs1173039794 6305 dbSNP
rs948019122 6308 dbSNP
rs1481124495 6311 dbSNP
rs1012136918 6313 dbSNP
rs1173717393 6321 dbSNP
rs1045367973 6325 dbSNP
rs1043759937 6335 dbSNP
rs756193744 6337 dbSNP
rs904418120 6341 dbSNP
rs1184971327 6343 dbSNP
rs1003611995 6344 dbSNP
rs368918967 6345 dbSNP
rs1173207966 6348 dbSNP
rs41282236 6354 dbSNP
rs780036206 6367 dbSNP
rs891600452 6367 dbSNP
rs1010376658 6381 dbSNP
rs1229158539 6384 dbSNP
rs1341565673 6396 dbSNP
rs1021717328 6397 dbSNP
rs1447603097 6400 dbSNP
rs557953160 6401 dbSNP
rs755559002 6401 dbSNP
rs975049001 6404 dbSNP
rs922177312 6406 dbSNP
rs1324476435 6407 dbSNP
rs1167900326 6410 dbSNP
rs779357362 6410 dbSNP
rs1018681508 6411 dbSNP
rs964508152 6413 dbSNP
rs1161049398 6422 dbSNP
rs907963135 6423 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000377275.3 | 3UTR | CAUUUCUUAAACCAGUAAUCUACAUUUUCUCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
249 hsa-miR-548g-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057504 CEP55 centrosomal protein 55 2 4
MIRT060829 CEP350 centrosomal protein 350 2 4
MIRT062719 MLEC malectin 2 4
MIRT064766 CCND2 cyclin D2 2 8
MIRT075336 SF3B3 splicing factor 3b subunit 3 2 2
MIRT080205 PRKACB protein kinase cAMP-activated catalytic subunit beta 2 2
MIRT080236 SMAD4 SMAD family member 4 2 6
MIRT087395 AGFG1 ArfGAP with FG repeats 1 2 4
MIRT088228 GRAMD4 GRAM domain containing 4 2 2
MIRT089490 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 6
MIRT091222 USP13 ubiquitin specific peptidase 13 2 2
MIRT092959 CYP2U1 cytochrome P450 family 2 subfamily U member 1 2 4
MIRT094091 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 4
MIRT097469 PAPD4 poly(A) RNA polymerase D4, non-canonical 2 2
MIRT102252 HBP1 HMG-box transcription factor 1 2 4
MIRT105440 ATP6V1B2 ATPase H+ transporting V1 subunit B2 2 10
MIRT107286 FAM73B mitoguardin 2 2 2
MIRT113584 ZDHHC18 zinc finger DHHC-type containing 18 2 2
MIRT113886 KPNA6 karyopherin subunit alpha 6 2 6
MIRT126457 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT135023 ADSS adenylosuccinate synthase 2 6
MIRT139889 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT149702 LDLR low density lipoprotein receptor 2 2
MIRT163230 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 2
MIRT165198 GRAMD3 GRAM domain containing 2B 2 2
MIRT172169 FZD6 frizzled class receptor 6 2 8
MIRT177396 ZMYND11 zinc finger MYND-type containing 11 2 2
MIRT179427 TBRG1 transforming growth factor beta regulator 1 2 6
MIRT195617 FAM195A MAPK regulated corepressor interacting protein 2 2 6
MIRT208727 MED12L mediator complex subunit 12 like 2 6
MIRT211508 ELMOD2 ELMO domain containing 2 2 2
MIRT213434 MOB1B MOB kinase activator 1B 2 6
MIRT240121 NDRG1 N-myc downstream regulated 1 2 2
MIRT243102 LCLAT1 lysocardiolipin acyltransferase 1 2 4
MIRT247387 HCFC2 host cell factor C2 2 4
MIRT248057 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT249457 ZNF691 zinc finger protein 691 2 4
MIRT253421 EVI5L ecotropic viral integration site 5 like 2 2
MIRT254148 ETS2 ETS proto-oncogene 2, transcription factor 2 2
MIRT258906 LAPTM4B lysosomal protein transmembrane 4 beta 2 4
MIRT259391 SLC6A8 solute carrier family 6 member 8 2 4
MIRT266966 LRRC55 leucine rich repeat containing 55 2 4
MIRT279001 GMFB glia maturation factor beta 2 10
MIRT288802 KCNJ2 potassium voltage-gated channel subfamily J member 2 2 2
MIRT325678 ZNF367 zinc finger protein 367 2 2
MIRT330543 HNRNPF heterogeneous nuclear ribonucleoprotein F 2 4
MIRT334269 RCC2 regulator of chromosome condensation 2 2 2
MIRT350225 PRNP prion protein 2 2
MIRT400510 SKIL SKI like proto-oncogene 2 10
MIRT405635 WBP4 WW domain binding protein 4 2 4
MIRT408651 QKI QKI, KH domain containing RNA binding 2 2
MIRT444161 ZNF701 zinc finger protein 701 2 2
MIRT444509 ZNF525 zinc finger protein 525 2 2
MIRT445209 CRYBG3 crystallin beta-gamma domain containing 3 2 2
MIRT446844 FOXP1 forkhead box P1 2 2
MIRT449026 ADRB1 adrenoceptor beta 1 2 2
MIRT450746 POLI DNA polymerase iota 2 4
MIRT450793 OTUD7A OTU deubiquitinase 7A 2 2
MIRT454916 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 12
MIRT455266 DDX39B DExD-box helicase 39B 2 10
MIRT455715 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT456098 MB21D1 Mab-21 domain containing 1 2 6
MIRT463635 YY1 YY1 transcription factor 2 8
MIRT463891 WNT7B Wnt family member 7B 2 2
MIRT466262 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 4
MIRT466820 STX6 syntaxin 6 2 6
MIRT466879 STX16 syntaxin 16 2 2
MIRT467524 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT468199 SGK1 serum/glucocorticoid regulated kinase 1 2 2
MIRT468633 SELT selenoprotein T 2 2
MIRT470367 PPP2R5E protein phosphatase 2 regulatory subunit B'epsilon 2 2
MIRT470998 PITPNA phosphatidylinositol transfer protein alpha 2 2
MIRT471559 PATL1 PAT1 homolog 1, processing body mRNA decay factor 2 6
MIRT472277 NFIB nuclear factor I B 2 4
MIRT472758 MTMR6 myotubularin related protein 6 2 8
MIRT474719 KIF13A kinesin family member 13A 2 6
MIRT475869 H3F3C H3 histone family member 3C 2 10
MIRT475903 H3F3B H3 histone family member 3B 2 8
MIRT477350 EOGT EGF domain specific O-linked N-acetylglucosamine transferase 2 4
MIRT477486 ELL2 elongation factor for RNA polymerase II 2 2 2
MIRT478096 DLG5 discs large MAGUK scaffold protein 5 2 6
MIRT479805 CCNA2 cyclin A2 2 6
MIRT480813 BLCAP bladder cancer associated protein 2 10
MIRT481947 ANKRD11 ankyrin repeat domain 11 2 2
MIRT483060 EXT2 exostosin glycosyltransferase 2 2 6
MIRT484143 LRRC45 leucine rich repeat containing 45 2 4
MIRT484904 ZFYVE26 zinc finger FYVE-type containing 26 2 4
MIRT485080 SOX4 SRY-box 4 2 10
MIRT485639 DICER1 dicer 1, ribonuclease III 2 4
MIRT485798 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT486271 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT486740 CNOT4 CCR4-NOT transcription complex subunit 4 2 6
MIRT487167 LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase 2 2
MIRT491642 PDRG1 p53 and DNA damage regulated 1 2 10
MIRT491934 WDR45B WD repeat domain 45B 2 8
MIRT492232 SLC48A1 solute carrier family 48 member 1 2 2
MIRT493089 MMGT1 membrane magnesium transporter 1 2 12
MIRT494479 BRWD3 bromodomain and WD repeat domain containing 3 2 2
MIRT494986 ROCK1 Rho associated coiled-coil containing protein kinase 1 2 2
MIRT495671 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 2
MIRT498467 PTBP2 polypyrimidine tract binding protein 2 2 10
MIRT499268 NBPF11 NBPF member 11 2 2
MIRT499855 SVOP SV2 related protein 2 12
MIRT500307 ZNF622 zinc finger protein 622 2 8
MIRT500640 TUBB2A tubulin beta 2A class IIa 2 8
MIRT501222 SEMA4C semaphorin 4C 2 6
MIRT501526 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 8
MIRT501569 PLEKHF2 pleckstrin homology and FYVE domain containing 2 2 4
MIRT502430 G3BP2 G3BP stress granule assembly factor 2 2 10
MIRT502967 CCNL1 cyclin L1 2 8
MIRT503470 ZNF154 zinc finger protein 154 2 6
MIRT504572 ERCC4 ERCC excision repair 4, endonuclease catalytic subunit 2 4
MIRT504956 ZNRF2 zinc and ring finger 2 2 6
MIRT505206 UBN2 ubinuclein 2 2 8
MIRT505238 UBE2D3 ubiquitin conjugating enzyme E2 D3 2 2
MIRT507570 DEK DEK proto-oncogene 2 2
MIRT509412 MCM7 minichromosome maintenance complex component 7 2 6
MIRT510715 SPG20 spartin 2 6
MIRT510859 RAN RAN, member RAS oncogene family 2 8
MIRT510914 PSMA2 proteasome subunit alpha 2 2 4
MIRT510944 PPTC7 PTC7 protein phosphatase homolog 2 8
MIRT511072 NIPA1 non imprinted in Prader-Willi/Angelman syndrome 1 2 4
MIRT511213 LNPEP leucyl and cystinyl aminopeptidase 2 4
MIRT511959 ELOVL5 ELOVL fatty acid elongase 5 2 6
MIRT512123 CREBL2 cAMP responsive element binding protein like 2 2 8
MIRT513686 RNF111 ring finger protein 111 2 2
MIRT513896 GRB10 growth factor receptor bound protein 10 2 6
MIRT516305 F8A2 coagulation factor VIII associated 2 2 2
MIRT516331 F8A3 coagulation factor VIII associated 3 2 2
MIRT517521 ITM2C integral membrane protein 2C 2 6
MIRT517930 IMPA1 inositol monophosphatase 1 2 2
MIRT521368 RNF11 ring finger protein 11 2 6
MIRT525192 ZNF93 zinc finger protein 93 2 2
MIRT527216 CCNL2 cyclin L2 2 2
MIRT527835 NUPL1 nucleoporin 58 2 2
MIRT529433 MALT1 MALT1 paracaspase 2 2
MIRT530166 C11orf44 chromosome 11 open reading frame 44 2 4
MIRT530515 C4orf32 family with sequence similarity 241 member A 2 4
MIRT532372 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT533855 TEAD1 TEA domain transcription factor 1 2 2
MIRT534750 RAVER2 ribonucleoprotein, PTB binding 2 2 4
MIRT534795 RAB8B RAB8B, member RAS oncogene family 2 2
MIRT538602 CDK19 cyclin dependent kinase 19 2 2
MIRT539247 ANKRD50 ankyrin repeat domain 50 2 2
MIRT539467 ADARB2 adenosine deaminase, RNA specific B2 (inactive) 2 2
MIRT543100 TNFRSF11A TNF receptor superfamily member 11a 2 2
MIRT543897 ESYT1 extended synaptotagmin 1 2 2
MIRT544980 MFF mitochondrial fission factor 2 4
MIRT545794 ZNF772 zinc finger protein 772 2 4
MIRT546009 WDR26 WD repeat domain 26 2 4
MIRT546378 STOX2 storkhead box 2 2 4
MIRT546681 RORA RAR related orphan receptor A 2 4
MIRT546947 SFTPA1 surfactant protein A1 2 2
MIRT547034 POGZ pogo transposable element derived with ZNF domain 2 2
MIRT547397 MKX mohawk homeobox 2 2
MIRT547470 MBNL3 muscleblind like splicing regulator 3 2 4
MIRT547501 MBNL1 muscleblind like splicing regulator 1 2 4
MIRT548077 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT548500 E2F8 E2F transcription factor 8 2 2
MIRT548883 CHEK2 checkpoint kinase 2 2 4
MIRT549063 CALM1 calmodulin 1 2 2
MIRT549166 BMP3 bone morphogenetic protein 3 2 2
MIRT549310 ARHGAP12 Rho GTPase activating protein 12 2 4
MIRT549345 ARC activity regulated cytoskeleton associated protein 2 2
MIRT549475 ACBD5 acyl-CoA binding domain containing 5 2 2
MIRT549678 ZNF598 zinc finger protein 598 2 2
MIRT550209 MAVS mitochondrial antiviral signaling protein 2 4
MIRT550356 INCENP inner centromere protein 2 4
MIRT550531 MYZAP myocardial zonula adherens protein 2 2
MIRT551156 ZNF678 zinc finger protein 678 2 2
MIRT552311 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT552880 WASL Wiskott-Aldrich syndrome like 2 4
MIRT553383 TRIM33 tripartite motif containing 33 2 2
MIRT554453 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT554868 RCAN2 regulator of calcineurin 2 2 2
MIRT556022 MYBL1 MYB proto-oncogene like 1 2 2
MIRT556175 MCC mutated in colorectal cancers 2 2
MIRT556238 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT556878 ITGA2 integrin subunit alpha 2 2 2
MIRT557575 GNPTAB N-acetylglucosamine-1-phosphate transferase alpha and beta subunits 2 2
MIRT557690 GATA6 GATA binding protein 6 2 2
MIRT557906 FBXO8 F-box protein 8 2 2
MIRT558132 ENPP4 ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative) 2 2
MIRT558481 DBN1 drebrin 1 2 2
MIRT558744 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT558760 CFL2 cofilin 2 2 2
MIRT559122 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT559406 GDNF glial cell derived neurotrophic factor 2 4
MIRT559476 ARL8A ADP ribosylation factor like GTPase 8A 2 2
MIRT559677 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT560049 ZNF680 zinc finger protein 680 2 2
MIRT560643 ZNF107 zinc finger protein 107 2 2
MIRT562581 CBX3 chromobox 3 2 2
MIRT564188 CLVS2 clavesin 2 2 2
MIRT564530 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT564540 CCDC80 coiled-coil domain containing 80 2 2
MIRT565290 TMPPE transmembrane protein with metallophosphoesterase domain 2 2
MIRT565315 TMEM41A transmembrane protein 41A 2 2
MIRT565950 RRAGD Ras related GTP binding D 2 2
MIRT566633 NFYA nuclear transcription factor Y subunit alpha 2 4
MIRT566818 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT567529 FGFR1OP FGFR1 oncogene partner 2 2
MIRT568631 ACVR2A activin A receptor type 2A 2 2
MIRT572141 DESI1 desumoylating isopeptidase 1 2 2
MIRT616029 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 4
MIRT620048 ODF4 outer dense fiber of sperm tails 4 2 2
MIRT620531 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT621878 TAOK3 TAO kinase 3 2 2
MIRT623242 MLLT6 MLLT6, PHD finger containing 2 2
MIRT623994 FAM104A family with sequence similarity 104 member A 2 2
MIRT624301 COL12A1 collagen type XII alpha 1 chain 2 2
MIRT626283 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT627771 RAB30 RAB30, member RAS oncogene family 2 2
MIRT641139 ZBTB33 zinc finger and BTB domain containing 33 2 2
MIRT644587 SPOP speckle type BTB/POZ protein 2 2
MIRT644820 DNAJC21 DnaJ heat shock protein family (Hsp40) member C21 2 2
MIRT645971 NHLRC2 NHL repeat containing 2 2 2
MIRT646171 PTPN14 protein tyrosine phosphatase, non-receptor type 14 2 2
MIRT646496 ZNF429 zinc finger protein 429 2 2
MIRT647834 RAB23 RAB23, member RAS oncogene family 2 2
MIRT648463 CCDC127 coiled-coil domain containing 127 2 2
MIRT657281 HRK harakiri, BCL2 interacting protein 2 2
MIRT658644 ENAH ENAH, actin regulator 2 2
MIRT658677 EMP2 epithelial membrane protein 2 2 2
MIRT665229 ZZZ3 zinc finger ZZ-type containing 3 2 2
MIRT669277 C19orf44 chromosome 19 open reading frame 44 2 2
MIRT676048 AUTS8 Autism, susceptibility to, 8 2 2
MIRT681484 DIP2A disco interacting protein 2 homolog A 2 2
MIRT681555 UBXN2A UBX domain protein 2A 2 2
MIRT683143 MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 2 2
MIRT688535 DCAF7 DDB1 and CUL4 associated factor 7 2 2
MIRT689429 CYB561 cytochrome b561 2 2
MIRT689535 KIAA0513 KIAA0513 2 2
MIRT689895 SOD2 superoxide dismutase 2 2 2
MIRT695990 SNX19 sorting nexin 19 2 2
MIRT697781 UBXN7 UBX domain protein 7 2 2
MIRT702915 CRAMP1L cramped chromatin regulator homolog 1 2 2
MIRT703145 GPR137C G protein-coupled receptor 137C 2 2
MIRT703525 FKBP15 FK506 binding protein 15 2 2
MIRT704537 CNEP1R1 CTD nuclear envelope phosphatase 1 regulatory subunit 1 2 2
MIRT704998 CAMSAP1 calmodulin regulated spectrin associated protein 1 2 2
MIRT705722 AMMECR1L AMMECR1 like 2 2
MIRT707121 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT707452 PPFIBP1 PPFIA binding protein 1 2 2
MIRT707776 WNK3 WNK lysine deficient protein kinase 3 2 2
MIRT707889 SLC30A7 solute carrier family 30 member 7 2 2
MIRT720532 CHERP calcium homeostasis endoplasmic reticulum protein 2 2
MIRT723860 CD209 CD209 molecule 2 2
MIRT725350 MUC21 mucin 21, cell surface associated 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548g Cisplatin 5460033 NSC119875 approved resistant cell line (OE19)
hsa-mir-548g Docetaxel+Cisplatin+5-Fluorouracil sensitive tissue (hypopharyngeal squamous cell carcinoma)

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