miRTarBase - #MIRT130131


—
pre-miRNA Information
pre-miRNA hsa-mir-499a   
Genomic Coordinates chr20: 34990376 - 34990497
Description Homo sapiens miR-499a stem-loop
Comment The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-499a-3p
Sequence 70| AACAUCACAGCAAGUCUGUGCU |91
Evidence Experimental
Experiments Cloned
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30512073 1 COSMIC
COSN8868602 4 COSMIC
COSN20079766 19 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs768246420 3 dbSNP
rs3746444 4 dbSNP
rs761417578 6 dbSNP
rs150018420 8 dbSNP
rs1406470841 9 dbSNP
rs772652105 11 dbSNP
rs1189840352 16 dbSNP
rs759966338 17 dbSNP
rs1475405341 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TXNIP   
Synonyms ARRDC6, EST01027, HHCPA78, THIF, VDUP1
Description thioredoxin interacting protein
Transcript NM_006472   
Expression
Putative miRNA Targets on TXNIP
3'UTR of TXNIP
(miRNA target sites are highlighted)		 
>TXNIP|NM_006472|3'UTR
   1 GCATGTGGAAGAAAAGAAGCAGCTTTACCTACTTGTTTCTTTTTGTCTCTCTTCCTGGACACTCACTTTTTCAGAGACTC
  81 AACAGTCTCTGCAATGGAGTGTGGGTCCACCTTAGCCTCTGACTTCCTAATGTAGGAGGTGGTCAGCAGGCAATCTCCTG
 161 GGCCTTAAAGGATGCGGACTCATCCTCAGCCAGCGCCCATGTTGTGATACAGGGGTGTTTGTTGGATGGGTTTAAAAATA
 241 ACTAGAAAAACTCAGGCCCATCCATTTTCTCAGATCTCCTTGAAAATTGAGGCCTTTTCGATAGTTTCGGGTCAGGTAAA
 321 AATGGCCTCCTGGCGTAAGCTTTTCAAGGTTTTTTGGAGGCTTTTTGTAAATTGTGATAGGAACTTTGGACCTTGAACTT
 401 ACGTATCATGTGGAGAAGAGCCAATTTAACAAACTAGGAAGATGAAAAGGGAAATTGTGGCCAAAACTTTGGGAAAAGGA
 481 GGTTCTTAAAATCAGTGTTTCCCCTTTGTGCACTTGTAGAAAAAAAAGAAAAACCTTCTAGAGCTGATTTGATGGACAAT
 561 GGAGAGAGCTTTCCCTGTGATTATAAAAAAGGAAGCTAGCTGCTCTACGGTCATCTTTGCTTAGAGTATACTTTAACCTG
 641 GCTTTTAAAGCAGTAGTAACTGCCCCACCAAAGGTCTTAAAAGCCATTTTTGGAGCCTATTGCACTGTGTTCTCCTACTG
 721 CAAATATTTTCATATGGGAGGATGGTTTTCTCTTCATGTAAGTCCTTGGAATTGATTCTAAGGTGATGTTCTTAGCACTT
 801 TAATTCCTGTCAAATTTTTTGTTCTCCCCTTCTGCCATCTTAAATGTAAGCTGAAACTGGTCTACTGTGTCTCTAGGGTT
 881 AAGCCAAAAGACAAAAAAAATTTTACTACTTTTGAGATTGCCCCAATGTACAGAATTATATAATTCTAACGCTTAAATCA
 961 TGTGAAAGGGTTGCTGCTGTCAGCCTTGCCCACTGTGACTTCAAACCCAAGGAGGAACTCTTGATCAAGATGCCCAACCC
1041 TGTGATCAGAACCTCCAAATACTGCCATGAGAAACTAGAGGGCAGGTCTTCATAAAAGCCCTTTGAACCCCCTTCCTGCC
1121 CTGTGTTAGGAGATAGGGATATTGGCCCCTCACTGCAGCTGCCAGCACTTGGTCAGTCACTCTCAGCCATAGCACTTTGT
1201 TCACTGTCCTGTGTCAGAGCACTGAGCTCCACCCTTTTCTGAGAGTTATTACAGCCAGAAAGTGTGGGCTGAAGATGGTT
1281 GGTTTCATGTTTTTGTATTATGTATCTTTTTGTATGGTAAAGACTATATTTTGTACTTAACCAGATATATTTTTACCCCA
1361 GATGGGGATATTCTTTGTAAAAAATGAAAATAAAGTTTTTTTAATGGAAAAAAAAATGTCTGTGAAAAAAAAAAAAAAAA
1441 AA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ucGUGUCUGAAC---GA---CACUACAa 5'
            | ::|| |||   ||   ||||||| 
Target 5' tcCTTGGAATTGATTCTAAGGTGATGTt 3'
 763 - 790 152.00 -16.20
2 
miRNA  3' ucgUGUCU-GAA--CGACACUAcaa 5'
             | ||| |||   |||||||   
Target 5' tggAGAGAGCTTTCCCTGTGATtat 3'
 560 - 584 121.00 -10.52
3 
miRNA  3' ucGU-GUCUGAACGACACUAcaa 5'
            || |:  | ||:||||||   
Target 5' gcCAGCGCCCATGTTGTGATaca 3'
 189 - 211 120.00 -13.02
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31613608 26 COSMIC
COSN23013884 29 COSMIC
COSN30498918 54 COSMIC
COSN26345387 86 COSMIC
COSN31518012 87 COSMIC
COSN31544793 97 COSMIC
COSN13465511 153 COSMIC
COSN30168748 176 COSMIC
COSN22854620 212 COSMIC
COSN32082653 300 COSMIC
COSN20215506 357 COSMIC
COSN25793126 567 COSMIC
COSN31481257 609 COSMIC
COSN28929309 699 COSMIC
COSN31487417 731 COSMIC
COSN8319264 786 COSMIC
COSN7175900 895 COSMIC
COSN16130546 903 COSMIC
COSN31541469 950 COSMIC
COSN1404851 989 COSMIC
COSN31566757 1020 COSMIC
COSN30175504 1198 COSMIC
COSN28813251 1210 COSMIC
COSN31563457 1215 COSMIC
COSN17255712 1341 COSMIC
COSN8635856 1344 COSMIC
COSN16130598 1349 COSMIC
COSN8319265 1407 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs782324253 5 dbSNP
rs781922861 6 dbSNP
rs782164728 10 dbSNP
rs1042196726 11 dbSNP
rs1378865015 12 dbSNP
rs1238192616 14 dbSNP
rs1322340577 17 dbSNP
rs1223844421 20 dbSNP
rs782412186 20 dbSNP
rs782011331 23 dbSNP
rs1263824209 27 dbSNP
rs775233794 27 dbSNP
rs782126186 28 dbSNP
rs371598136 29 dbSNP
rs781829085 35 dbSNP
rs1179845309 39 dbSNP
rs762566229 45 dbSNP
rs187591491 47 dbSNP
rs782695925 49 dbSNP
rs1438233194 53 dbSNP
rs1176339594 56 dbSNP
rs1406774368 58 dbSNP
rs1405664156 61 dbSNP
rs371239177 62 dbSNP
rs763445640 66 dbSNP
rs191199120 68 dbSNP
rs1331993431 80 dbSNP
rs926556698 85 dbSNP
rs980068913 86 dbSNP
rs942069156 94 dbSNP
rs1380153984 102 dbSNP
rs1230279460 103 dbSNP
rs1310607527 110 dbSNP
rs1321232464 111 dbSNP
rs1199751130 115 dbSNP
rs1260570451 117 dbSNP
rs782040268 123 dbSNP
rs782156144 126 dbSNP
rs1198407308 128 dbSNP
rs1238455155 128 dbSNP
rs1472910620 134 dbSNP
rs1183259112 139 dbSNP
rs1410937390 144 dbSNP
rs1474596615 150 dbSNP
rs1171229323 157 dbSNP
rs1402347354 160 dbSNP
rs1464057644 161 dbSNP
rs1327900605 164 dbSNP
rs1359573889 167 dbSNP
rs983462122 171 dbSNP
rs1450421426 172 dbSNP
rs782151618 175 dbSNP
rs782730266 176 dbSNP
rs1219316893 182 dbSNP
rs751580661 189 dbSNP
rs1316562673 194 dbSNP
rs757127542 195 dbSNP
rs1279726855 196 dbSNP
rs782458723 199 dbSNP
rs1444522337 202 dbSNP
rs964973982 214 dbSNP
rs1018315568 215 dbSNP
rs1211711784 216 dbSNP
rs1235396722 239 dbSNP
rs1485173889 242 dbSNP
rs1193744753 246 dbSNP
rs1425196792 247 dbSNP
rs1000527363 251 dbSNP
rs782095422 264 dbSNP
rs782735059 269 dbSNP
rs1425527728 277 dbSNP
rs1415978448 281 dbSNP
rs1020648610 286 dbSNP
rs1375066981 292 dbSNP
rs182339054 293 dbSNP
rs896250928 294 dbSNP
rs1430590223 300 dbSNP
rs186992970 307 dbSNP
rs587669942 308 dbSNP
rs1280146264 309 dbSNP
rs1346661958 315 dbSNP
rs1216943737 318 dbSNP
rs1264644353 325 dbSNP
rs372245117 327 dbSNP
rs1247206460 328 dbSNP
rs1479008383 331 dbSNP
rs905099575 334 dbSNP
rs1394305473 335 dbSNP
rs1420489469 337 dbSNP
rs587633419 347 dbSNP
rs1358627658 351 dbSNP
rs1400205301 353 dbSNP
rs1324348440 357 dbSNP
rs587688547 366 dbSNP
rs880001759 372 dbSNP
rs1434993978 373 dbSNP
rs1303097894 380 dbSNP
rs1240339979 388 dbSNP
rs1378137080 388 dbSNP
rs1287737864 397 dbSNP
rs1348176239 402 dbSNP
rs7211 402 dbSNP
rs909194389 403 dbSNP
rs1252106635 405 dbSNP
rs139816793 405 dbSNP
rs983429530 408 dbSNP
rs1180677079 410 dbSNP
rs11537988 416 dbSNP
rs1378681121 420 dbSNP
rs1469875254 421 dbSNP
rs1163879673 425 dbSNP
rs1393031655 431 dbSNP
rs929395114 432 dbSNP
rs1325860264 434 dbSNP
rs1401411327 444 dbSNP
rs782760634 447 dbSNP
rs1449452453 451 dbSNP
rs1307615133 453 dbSNP
rs1333591721 454 dbSNP
rs923375748 455 dbSNP
rs587595014 458 dbSNP
rs144336702 461 dbSNP
rs587721930 462 dbSNP
rs979655270 466 dbSNP
rs1272484245 470 dbSNP
rs968300777 475 dbSNP
rs1458201715 478 dbSNP
rs782603988 483 dbSNP
rs1200297110 486 dbSNP
rs1248193527 499 dbSNP
rs1437439441 507 dbSNP
rs1188533701 516 dbSNP
rs1370225266 517 dbSNP
rs1020617601 518 dbSNP
rs1164375997 528 dbSNP
rs1471852789 528 dbSNP
rs1424966048 530 dbSNP
rs60016427 532 dbSNP
rs1329704935 535 dbSNP
rs1396260982 536 dbSNP
rs1390424829 537 dbSNP
rs1334409691 538 dbSNP
rs1341676501 540 dbSNP
rs1230906272 543 dbSNP
rs1009258927 547 dbSNP
rs960484146 549 dbSNP
rs1292204396 555 dbSNP
rs1318464304 556 dbSNP
rs1220448927 559 dbSNP
rs1249351897 560 dbSNP
rs1480204605 573 dbSNP
rs1201181041 578 dbSNP
rs17221751 580 dbSNP
rs1001967957 584 dbSNP
rs904984593 585 dbSNP
rs1491098482 591 dbSNP
rs1491237619 592 dbSNP
rs1479063432 600 dbSNP
rs1169206620 603 dbSNP
rs1372803185 604 dbSNP
rs1466890670 605 dbSNP
rs1038185991 606 dbSNP
rs1174735186 608 dbSNP
rs1005396171 609 dbSNP
rs887055645 610 dbSNP
rs1412581170 612 dbSNP
rs1311718841 614 dbSNP
rs1173796060 624 dbSNP
rs1293355589 625 dbSNP
rs1401723505 625 dbSNP
rs1306645745 627 dbSNP
rs1233700693 636 dbSNP
rs587625832 637 dbSNP
rs1210470225 640 dbSNP
rs1286782430 651 dbSNP
rs782317952 663 dbSNP
rs1489316693 676 dbSNP
rs929338953 678 dbSNP
rs923374357 680 dbSNP
rs1261621694 686 dbSNP
rs1434316789 688 dbSNP
rs1201416620 696 dbSNP
rs1393705612 697 dbSNP
rs1432427649 700 dbSNP
rs1172659571 707 dbSNP
rs1360531020 709 dbSNP
rs587680878 712 dbSNP
rs1361150127 715 dbSNP
rs1387331419 717 dbSNP
rs1303074471 720 dbSNP
rs755859477 720 dbSNP
rs1368560706 732 dbSNP
rs943471171 734 dbSNP
rs1287031216 735 dbSNP
rs1356195735 736 dbSNP
rs184403951 757 dbSNP
rs1260255804 760 dbSNP
rs1489078465 762 dbSNP
rs979622524 764 dbSNP
rs879951227 765 dbSNP
rs587616307 768 dbSNP
rs968269660 772 dbSNP
rs1380513567 778 dbSNP
rs914194992 783 dbSNP
rs1420548122 786 dbSNP
rs987815665 789 dbSNP
rs587697781 795 dbSNP
rs1327851862 797 dbSNP
rs1391945520 798 dbSNP
rs587738475 799 dbSNP
rs1439880342 802 dbSNP
rs188801165 813 dbSNP
rs1034694017 814 dbSNP
rs1222326818 816 dbSNP
rs1306316807 824 dbSNP
rs1002338477 826 dbSNP
rs1322437540 827 dbSNP
rs17215345 829 dbSNP
rs1247537919 846 dbSNP
rs1271839122 855 dbSNP
rs969178468 869 dbSNP
rs1199631976 871 dbSNP
rs1240471150 871 dbSNP
rs1481382993 872 dbSNP
rs1175151496 877 dbSNP
rs1406527116 881 dbSNP
rs1166547639 886 dbSNP
rs879991460 893 dbSNP
rs1491067549 894 dbSNP
rs17215338 897 dbSNP
rs1331759889 899 dbSNP
rs1016711766 900 dbSNP
rs1297825524 901 dbSNP
rs1356080896 901 dbSNP
rs1440237012 901 dbSNP
rs1379912358 908 dbSNP
rs1230086645 914 dbSNP
rs1005366474 922 dbSNP
rs887026030 924 dbSNP
rs1334743209 928 dbSNP
rs199827526 932 dbSNP
rs998124411 939 dbSNP
rs1201940875 940 dbSNP
rs1231944411 943 dbSNP
rs587637170 946 dbSNP
rs901803859 949 dbSNP
rs193055505 950 dbSNP
rs587754573 951 dbSNP
rs11537987 952 dbSNP
rs943433626 954 dbSNP
rs1408014581 959 dbSNP
rs1169551439 961 dbSNP
rs1359958985 962 dbSNP
rs1416911570 974 dbSNP
rs1311094732 979 dbSNP
rs1354936972 981 dbSNP
rs1401073154 982 dbSNP
rs910662203 984 dbSNP
rs1272447258 992 dbSNP
rs1360566475 1002 dbSNP
rs1214348658 1006 dbSNP
rs1279834666 1011 dbSNP
rs587707558 1017 dbSNP
rs1312385871 1018 dbSNP
rs1212604008 1026 dbSNP
rs1277515542 1027 dbSNP
rs778849135 1031 dbSNP
rs587631368 1033 dbSNP
rs946900640 1034 dbSNP
rs7212 1035 dbSNP
rs1474423371 1037 dbSNP
rs1185681179 1038 dbSNP
rs1425637740 1040 dbSNP
rs185869681 1044 dbSNP
rs4755 1045 dbSNP
rs11537984 1056 dbSNP
rs782111820 1062 dbSNP
rs747400980 1067 dbSNP
rs939637061 1072 dbSNP
rs1374865849 1074 dbSNP
rs782357128 1081 dbSNP
rs587663814 1082 dbSNP
rs1320449964 1086 dbSNP
rs1325170860 1087 dbSNP
rs587731065 1088 dbSNP
rs1275758715 1100 dbSNP
rs781954705 1102 dbSNP
rs1235949373 1103 dbSNP
rs148808239 1104 dbSNP
rs1300821227 1105 dbSNP
rs1346774785 1107 dbSNP
rs1216697503 1109 dbSNP
rs13340 1112 dbSNP
rs969092902 1115 dbSNP
rs75291601 1117 dbSNP
rs1445163633 1118 dbSNP
rs1215023304 1120 dbSNP
rs1247001755 1121 dbSNP
rs587742862 1123 dbSNP
rs1455432809 1128 dbSNP
rs1191582395 1133 dbSNP
rs587632424 1134 dbSNP
rs1440595578 1137 dbSNP
rs1025436781 1138 dbSNP
rs782067883 1143 dbSNP
rs1382907398 1146 dbSNP
rs1324782358 1149 dbSNP
rs1397061837 1152 dbSNP
rs1439140528 1153 dbSNP
rs901116218 1156 dbSNP
rs1369745291 1160 dbSNP
rs1239380532 1162 dbSNP
rs1280747961 1164 dbSNP
rs13203 1168 dbSNP
rs1223087601 1173 dbSNP
rs1469822683 1180 dbSNP
rs73004671 1181 dbSNP
rs1252203121 1182 dbSNP
rs1458344032 1184 dbSNP
rs1184283201 1185 dbSNP
rs1362065982 1186 dbSNP
rs1163966506 1192 dbSNP
rs1469702544 1192 dbSNP
rs889195041 1193 dbSNP
rs1043797905 1203 dbSNP
rs1460375002 1209 dbSNP
rs1325623390 1223 dbSNP
rs782809435 1224 dbSNP
rs1391541737 1226 dbSNP
rs946785983 1234 dbSNP
rs1060179 1239 dbSNP
rs1333683268 1246 dbSNP
rs1293420506 1248 dbSNP
rs1440836776 1248 dbSNP
rs782123605 1249 dbSNP
rs1231405845 1251 dbSNP
rs1272265404 1251 dbSNP
rs1339831652 1252 dbSNP
rs781886945 1256 dbSNP
rs1248667835 1268 dbSNP
rs939585610 1269 dbSNP
rs1188706047 1271 dbSNP
rs928262975 1274 dbSNP
rs1259759524 1279 dbSNP
rs1474484411 1285 dbSNP
rs980844449 1286 dbSNP
rs1164841981 1288 dbSNP
rs1424714665 1290 dbSNP
rs1463841426 1293 dbSNP
rs1166587935 1295 dbSNP
rs1393839142 1298 dbSNP
rs587744932 1301 dbSNP
rs17215352 1304 dbSNP
rs1356845442 1312 dbSNP
rs587697405 1314 dbSNP
rs1292610322 1315 dbSNP
rs951155166 1319 dbSNP
rs782761667 1326 dbSNP
rs1327009960 1328 dbSNP
rs1229331365 1330 dbSNP
rs1249443048 1334 dbSNP
rs587759329 1341 dbSNP
rs1211893044 1348 dbSNP
rs1484739763 1356 dbSNP
rs1282482732 1357 dbSNP
rs139537792 1359 dbSNP
rs1263042191 1360 dbSNP
rs587711312 1362 dbSNP
rs1430853212 1367 dbSNP
rs965670628 1373 dbSNP
rs1191461016 1379 dbSNP
rs1372896149 1381 dbSNP
rs1474856821 1384 dbSNP
rs1173878766 1385 dbSNP
rs1376677555 1390 dbSNP
rs1432309416 1391 dbSNP
rs1311815383 1395 dbSNP
rs1385539659 1402 dbSNP
rs1383900622 1403 dbSNP
rs1293116545 1404 dbSNP
rs1325670923 1411 dbSNP
rs1018223865 1413 dbSNP
rs1210215430 1417 dbSNP
rs1305882263 1417 dbSNP
rs143469330 1417 dbSNP
rs79787359 1417 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control PAR-CLIP data was present in GSM545217. RNA binding protein: AGO2. Condition:miR-7 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ucGUGUC-UGAACGACACUAcaa 5'
            | :|| ||||    | ||   
Target 5' uuCUUAGCACUU----UAAUucc 3'
 		1 - 19
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000369317.4 | 3UTR | AAUUGAUUCUAAGGUGAUGUUCUUAGCACUUUAAUUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM545217
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-7 transfection
Location of target site ENST00000369317.4 | 3UTR | UUCUUAGCACUUUAAUUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer 0.547 2.8e-3 0.561 2.2e-3 24 Click to see details
GSE32688 Pancreatic cancer 0.463 3.8e-3 0.452 4.7e-3 32 Click to see details
GSE28260 Renal cortex and medulla 0.402 8.7e-2 0.334 1.3e-1 13 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.295 1.0e-1 -0.107 3.3e-1 20 Click to see details
GSE21687 Ependynoma primary tumors 0.138 1.4e-1 0.119 1.7e-1 64 Click to see details
GSE42095 Differentiated embryonic stem cells -0.17 2.2e-1 -0.091 3.4e-1 23 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.159 2.2e-1 0.148 2.4e-1 25 Click to see details
GSE38226 Liver fibrosis 0.141 2.7e-1 -0.049 4.2e-1 21 Click to see details
GSE17498 Multiple myeloma -0.084 3.0e-1 -0.067 3.4e-1 40 Click to see details
GSE26953 Aortic valvular endothelial cells 0.094 3.3e-1 0.073 3.7e-1 24 Click to see details
GSE19350 CNS germ cell tumors -0.049 4.4e-1 0.177 2.9e-1 12 Click to see details
GSE19350 CNS germ cell tumors -0.049 4.4e-1 0.177 2.9e-1 12 Click to see details
GSE19350 CNS germ cell tumors -0.049 4.4e-1 0.177 2.9e-1 12 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
KIRP -0.723 0.01 -0.667 0.02 9 Click to see details
KICH -0.579 0.04 -0.612 0.03 10 Click to see details
UCEC 0.694 0.04 0.857 0.01 7 Click to see details
BRCA -0.982 0.06 -1.000 0.5 3 Click to see details
THCA -0.28 0.07 -0.418 0.01 29 Click to see details
LUSC -0.815 0.09 -0.800 0.1 4 Click to see details
KIRC 0.282 0.12 0.225 0.18 19 Click to see details
STAD -0.475 0.21 -0.300 0.31 5 Click to see details
HNSC 0.152 0.35 0.183 0.32 9 Click to see details
PRAD -0.093 0.38 -0.103 0.36 14 Click to see details
LIHC 0.065 0.4 0.311 0.11 17 Click to see details
LIHC 0.065 0.4 0.311 0.11 17 Click to see details
LIHC 0.065 0.4 0.311 0.11 17 Click to see details
LIHC 0.065 0.4 0.311 0.11 17 Click to see details
LIHC 0.065 0.4 0.311 0.11 17 Click to see details
59 hsa-miR-499a-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT130131 TXNIP thioredoxin interacting protein 2 2
MIRT133678 ETNK1 ethanolamine kinase 1 2 2
MIRT252103 NAPG NSF attachment protein gamma 2 2
MIRT260160 IGFBP4 insulin like growth factor binding protein 4 2 2
MIRT388009 DR1 down-regulator of transcription 1 2 2
MIRT441692 ABLIM1 actin binding LIM protein 1 2 6
MIRT447799 EPC2 enhancer of polycomb homolog 2 2 2
MIRT450657 STYX serine/threonine/tyrosine interacting protein 2 4
MIRT456843 ZNF460 zinc finger protein 460 2 2
MIRT464134 VPS35 VPS35, retromer complex component 2 2
MIRT465101 TSC22D3 TSC22 domain family member 3 2 4
MIRT470051 PTGFRN prostaglandin F2 receptor inhibitor 2 2
MIRT474146 LIMA1 LIM domain and actin binding 1 2 6
MIRT474153 LIFR LIF receptor alpha 2 2
MIRT485327 MYO1D myosin ID 2 2
MIRT496403 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT497280 MAF MAF bZIP transcription factor 2 2
MIRT500970 SPTSSA serine palmitoyltransferase small subunit A 2 2
MIRT501536 POM121C POM121 transmembrane nucleoporin C 2 6
MIRT505174 WDR76 WD repeat domain 76 2 4
MIRT505203 UQCRB ubiquinol-cytochrome c reductase binding protein 2 4
MIRT506745 LIN54 lin-54 DREAM MuvB core complex component 2 4
MIRT506799 KLHL15 kelch like family member 15 2 6
MIRT525718 DCAF12L2 DDB1 and CUL4 associated factor 12 like 2 2 2
MIRT530014 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT531457 PROSER2 proline and serine rich 2 2 2
MIRT532272 CD93 CD93 molecule 2 2
MIRT538715 CAPRIN2 caprin family member 2 2 4
MIRT547356 NAT8L N-acetyltransferase 8 like 2 2
MIRT551468 TRIM59 tripartite motif containing 59 2 2
MIRT555444 NT5C3A 5'-nucleotidase, cytosolic IIIA 2 2
MIRT555674 PGAM4 phosphoglycerate mutase family member 4 2 4
MIRT557816 FOXO1 forkhead box O1 2 2
MIRT557853 FIGN fidgetin, microtubule severing factor 2 2
MIRT557880 FEM1B fem-1 homolog B 2 4
MIRT562299 GLO1 glyoxalase I 2 2
MIRT563245 QRFPR pyroglutamylated RFamide peptide receptor 2 2
MIRT565571 SLC7A2 solute carrier family 7 member 2 2 2
MIRT566214 PTMA prothymosin, alpha 2 2
MIRT575544 Map4 microtubule-associated protein 4 2 2
MIRT609316 FXYD6 FXYD domain containing ion transport regulator 6 2 2
MIRT609362 ACOT2 acyl-CoA thioesterase 2 2 2
MIRT611163 BTLA B and T lymphocyte associated 2 4
MIRT611749 CACNA1B calcium voltage-gated channel subunit alpha1 B 2 2
MIRT615019 ELK4 ELK4, ETS transcription factor 2 2
MIRT623317 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT624550 BMPR1A bone morphogenetic protein receptor type 1A 2 2
MIRT633934 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT635691 BMP10 bone morphogenetic protein 10 2 2
MIRT646438 DNAH8 dynein axonemal heavy chain 8 2 2
MIRT651940 UBN1 ubinuclein 1 2 2
MIRT663605 TBC1D22A TBC1 domain family member 22A 2 2
MIRT689759 PRR13 proline rich 13 2 2
MIRT691916 SRXN1 sulfiredoxin 1 2 2
MIRT698678 TEF TEF, PAR bZIP transcription factor 2 2
MIRT700924 PDS5A PDS5 cohesin associated factor A 2 2
MIRT707970 PDE12 phosphodiesterase 12 2 2
MIRT715290 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT722414 RARS2 arginyl-tRNA synthetase 2, mitochondrial 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-499a Erlotinib 176870 NSC718781 approved sensitive Low Osteosarcoma cell line (CD166)
hsa-mir-499a Cisplatin 5460033 NSC119875 approved resistant Low Cervical Cancer cell line (GH329, Hela, CaSki, Siha)
hsa-miR-499a-3p Trametinib 11707110 NSC758246 approved sensitive High Melanoma cell line (M14) (2uM)
hsa-miR-499a-3p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (M14) (2uM)
hsa-miR-499a-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-499a-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-499a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-499a-3p Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM47)
hsa-miR-499a-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM36)
hsa-miR-499a-3p Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-499a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (RPMI2650)
hsa-miR-499a-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-499a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-499a-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

Error report submission