miRTarBase - #MIRT139911


—
pre-miRNA Information
pre-miRNA hsa-mir-1273h   
Genomic Coordinates chr16: 24203116 - 24203231
Description Homo sapiens miR-1273h stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1273h-5p
Sequence 33| CUGGGAGGUCAAGGCUGCAGU |53
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1028034199 14 dbSNP
rs542383563 18 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol BTF3L4   
Synonyms -
Description basic transcription factor 3 like 4
Transcript NM_001136497   
Other Transcripts NM_152265   
Expression
Putative miRNA Targets on BTF3L4
3'UTR of BTF3L4
(miRNA target sites are highlighted)		 
>BTF3L4|NM_001136497|3'UTR
   1 AAGTTTGGTTTTTGGAAGCTGGCATGGACTAGATTTAACAAATCAGCTATGTGGTTCCAAAGTTTTACAGACATGGAGAA
  81 CATCACCTGTTACTAGTTCAGTAATATAAATATTTTGTATATTAATAATGCTGTTTGTTCAGCATTTTTCGGTCATTTGA
 161 TTTTGCATTTTGCACTTCCTCCCAGGATATTTTTTTGGTCAAAATATGAAGTATTGGTGCAGTTTGAGGGTGTTTTGGTT
 241 TTTGATTCCTGGTTTTTTTGTTTTTTGTTTGGGGTATTTTTGGTGTATGTATGTTTATGTATGTGTGTGGGTATGTGTGT
 321 ATACAGTGGAGAGCAAATTGGAAAACAGTTCTATTTATCCTCCTCCCTCCCCAGTAGAAATAAAAAAAATCTTTACATTT
 401 GTTACTTTTCTTTTCCCCCCGTAAGACACAGAATTAATGGAAAGTGAGTATCTTGGATTTCAAATCTGAAGAGATTTTTA
 481 CCATTAGTGGTTTGATTTTAATTTGCTTGGTTAACTATCATATTTTTCATACACTTCTCTGGATTTAAAATATCTTGAGG
 561 TATTTTGCCACTGGCTTCATGCTGGAGTAATGGGTAACATATCTTTGGTATGGTTGCCTTAGATTAACTTACCTAGTCAG
 641 ACCCAGAAGAACTTCTTTTACTAGCTTGCTTCCTAAATGCCTTTTTTCCTCTCCTTTTGGTCTCCAAATGGCCTGGTCAG
 721 CTTTTGGTAATATTCTTCCTCATCTTCCACCTAGCTTGAGAAGGATGTTCTCCATATAGAGTTTAGCGAGTGCCTAATCC
 801 CTCCTTTTGTAAGATTTTGTTCCCTCAGCTTGAGGAACAACTTCATCTTCAACTTTTTATTTCTCCCTGATGTTACAGTT
 881 TGGTAGATTTCAAACTGGAATAGCTAGCATGTGCTTGCTAAATAATTTTATGCCAGCCTTATCCTGTATCCTAGCTGTTC
 961 TTAACAGCAGGTACAAAAATGCCTGTTTTTCAGCAAGGTTGAAATTGGGAATGTCCTTTTGAATCAGAAGAAAATAGGCC
1041 ATAGACTCATCTCCCAGCACAAATGGGCATTCTATGAAATGGTACTGGCCCTAGGAGGATTTCCTCAACCACTCTCCTAC
1121 TCTTGGCCTTGAACCTACCTCTGGGTTGGATCTTACTATTGTAGCTGCTCACTATACCCTCCTGCATGCTTAGAATAATG
1201 CTTTGAGGGGAGCACTGGTAAAACACAGTATTTATTTTTTTACCTCCTTTAAGAGGACTTGGAGGTAAGTTGCATTCATT
1281 CACTCAAGTTTCCCTCTTGCTGTCTAATAGAAGCTTACTTTTTGCTATATCAGCATTTGTTACAGCCAATATTTAAGGAC
1361 AAAATTTAGAAAATATATCATTTCCTGGCCCATCATCAAACTAATACAGCTTAACCTTGCAGCTACCAACTTTTGTGTCA
1441 AGCTAGATATCTTTATTTGATATCTAAGGTGCAAGACCAACAATATATTAAGAGATCTGTAGACATGAAGGCAAAGCTCT
1521 TGTATTTTTTTTCATCCAAACACCTCAATTTATTTTATAAATTCGTTCATTTTTCCTGTTATGTTTTATATAATATATGG
1601 ACTAAACAAAATAAAATAACAGTGCAAAAGAGGAGAATATTTCCTCTTGTGCTTTTCTTGATGTTGTGTACAGAATTTCC
1681 TTTTATATTATTCCTCTACCCTCCACCTGTAAATGAATGTTAGTGCAGTAATTGTTTGAAATAATGCCTCATCCAGTGTT
1761 AGGTCAGTAGCTCCACAGTCTACACAGTCCAGAATTCTTTCTCTAATTGTCCCAAAGGGGGACATTGTGGAGGCAGAGTT
1841 AGGGGGAACCACTTCAAGTGGTTAGGGACAGATAAATAATAGGCAGTATAGCACATGAAAGAAAACACACACTTGGAAGC
1921 CAGGAGACTTGTGTCCTAGTCAAAACTCTGGCATTATGTGACCTTGGACAGGTCATCTAACTACTCTGAAATTTATCATC
2001 AGTCAAATAAGATTTTATTCTGTTTTGTTTTGTTTGAGATGGGGATTTGCTCTTGTTGTCCAGGCCGAACTGCAATGTTG
2081 TGGTCTCGGCTGACTGCAACCTCCACCTCCCAGATTCAAGCGATTCTCCTGTCTCAGCCTCCACAGTAGCTGGGATTTTT
2161 TTTTTTTTTTTTTGTATTTTTAGTAGAGATGGGGTTTTACCATGTTGCCCAGGCCGGTCTTGAATTCCTGTCCTCAGGTG
2241 ATTCATTTGCCTCGGCCTCCCAAAGTGCTAGGATTACAGGCGTGAGCCACTGCACCCAGCCCAAATGAGATGTTTCTAAA
2321 TCTAAAGTTTCTTCTGCTTCTGCATTTCTGTGAATCTCATTTGAAATTTTTCAGGGAAGGGATTTTATCATTTGTTCAGA
2401 GATGTCTTTATTTTTATTAATACCCATAAAACGTTTGTGTATTTGCTTCTTCCTCTTTCTCCTTTTGATCACATTTTAGC
2481 TACTTATCTAGAGGATCTCTGGCCAAGTATTCCCTTTTATTGTATTGATAACAATTCTTAATGGCTGGCCTCTCTTGTGT
2561 ACAATGAGCCAATATTCTTTTTTGTTCTATATTTTTGTATCTTCCCCTTTCCTGAACAAAGCATATTTAGAGTCTCAAAG
2641 AAATCCTCTCCACAAAGACATGTTCCTCCCTCTGGTGTGGGTAGACATAGGGTAAGAGTTTGGATGAAACTTTTGTAAAT
2721 TGTAGTGTTCTTGGCATAAATATGAATTAAATCTTTTTTTATATTTAAATAACTAGTTAAATATGTGCTTCTTACTAAGA
2801 TTAGGTATTTTTTGCCAAGATAACAATGATAAAAACATTTTGGGGGGGAAATTGACCTTAAAATTTTGGGATAATTCAAG
2881 AAATGTCTGCAGAAAATTGATTTATGATCTTAATTTTTGTGTTAGTCCTTTGAGGTTTTTTTGTTTTTGTTTTTGTTCTT
2961 TGTAAAGCGCCTTATCTGTTTTGGACAAGTCCAAAGTAAATGGTTGGGCTCTTATATCTGTTTTACCCTTATTTTTCCCA
3041 TTAAGTAATGGTTTAAGAATATATCAAGCACCTTAATTTGTTGTTAAGTAGCTAGTGCTTACAGGATTCCATTAAATTCA
3121 CTTTAATAAGCCTATGAAGTTCTTATGAAAAACCCATATCTGCGATATGTTTGATTTGTTTCTTTGTTTTAATTCAGTGT
3201 TTAACCCTAGGTATGCTACATACCCATAAATAAGATACCATGGTAAGAGATAGTATGTTATAGTGGGAAAAGCACAAGTT
3281 TTTAGATAGAGATCAATTCTGCTATCTACCCTTACATTGTAACCTTTCTGACAGGGCTGCTGCGGTGCACAACTTCGGGA
3361 GCCATCACTTATTTTTGTTGTGTTCCAGAAGGTGTCATTTTCATAGACTGCAGTGTGAATAGTGTCCTCCATTAATAATG
3441 CAATGATGGCCTTGCTCTCTGAGCCTCAGTTTTATCTATAAAATGGTACCTAGAAGAGTCATGATTTCTTAGAATCCCCT
3521 AAATTATTAAGGTGAAGGTAGAAGATGATTAAAGCGTGTTATCTCCTAAGCTATGGCTTAGATTTTCCGAAGCTCATGGT
3601 TCTAGGCACAGAAAGTCTCCATTCTACACTGCATTTCAACCTGTGTTGAACAACACTCCAGTTCAGCCTGTATTGCTATG
3681 CCACATAGAGTTTGCCTGAATTATTATAGCTTTCTTAATAGTTTTGTTTATGATCCACTCTCTCCAGCCCATTACACAGG
3761 AGCCAGCTACCTAAATTTCCTATCTGAGCATGTCCTTACATTTACTTCCAGCATACTATTCATTTGCCATAGTAGAGTAT
3841 TAAGATTATTTGATTTTCTTTTTACTTTCTCGTAGTGCCCAATGTGTAGTTTACTCAACATCATAATATGTAATGTTTTT
3921 CAACTACTTACTGTTGAATACAAAGTTATCTCATTTAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ugACGUCGGAACUGGAGGGUc 5'
            |||| |||  |||||||| 
Target 5' acTGCAACCTCCACCTCCCAg 3'
 2093 - 2113 171.00 -30.00
2 
miRNA  3' ugacguCGGAACUGGAGGGUc 5'
                |||| |:||||||| 
Target 5' tcatttGCCTCGGCCTCCCAa 3'
 2243 - 2263 163.00 -21.60
3 
miRNA  3' ugACGUCGGAACUGGAGGGUc 5'
            ||||  |||  ||||||| 
Target 5' ttTGCA--CTT--CCTCCCAg 3'
 169 - 185 155.00 -20.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31520806 13 COSMIC
COSN26669233 37 COSMIC
COSN30192052 45 COSMIC
COSN31507724 58 COSMIC
COSN26968164 63 COSMIC
COSN31592594 82 COSMIC
COSN1448689 105 COSMIC
COSN26668369 118 COSMIC
COSN31528808 121 COSMIC
COSN30163637 178 COSMIC
COSN1448690 270 COSMIC
COSN31567082 284 COSMIC
COSN31606765 385 COSMIC
COSN31592985 390 COSMIC
COSN31481343 422 COSMIC
COSN31487829 533 COSMIC
COSN1448691 628 COSMIC
COSN22404717 956 COSMIC
COSN32065417 984 COSMIC
COSN16435847 1050 COSMIC
COSN26814492 1135 COSMIC
COSN31484329 1305 COSMIC
COSN31530985 1329 COSMIC
COSN1448692 1381 COSMIC
COSN26229058 1415 COSMIC
COSN31519676 1498 COSMIC
COSN31584893 1551 COSMIC
COSN31549231 1565 COSMIC
COSN30540679 1626 COSMIC
COSN26602744 1669 COSMIC
COSN15030938 1883 COSMIC
COSN16013271 2631 COSMIC
COSN19581704 2993 COSMIC
COSN27105476 3273 COSMIC
COSN4750840 3393 COSMIC
COSN5168800 3731 COSMIC
COSN1448693 3837 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1304552313 10 dbSNP
rs977113891 14 dbSNP
rs551776577 20 dbSNP
rs569569537 22 dbSNP
rs1358126485 24 dbSNP
rs1410557759 24 dbSNP
rs765161559 27 dbSNP
rs371859269 30 dbSNP
rs1359535173 31 dbSNP
rs1441163369 32 dbSNP
rs763040071 39 dbSNP
rs1310837603 42 dbSNP
rs1373910598 49 dbSNP
rs1411871266 50 dbSNP
rs1177182482 60 dbSNP
rs1439426032 67 dbSNP
rs1219796731 74 dbSNP
rs1257277057 82 dbSNP
rs536957423 83 dbSNP
rs1482560845 84 dbSNP
rs1255494664 86 dbSNP
rs1216522489 97 dbSNP
rs1356154854 98 dbSNP
rs1325764954 99 dbSNP
rs1201809157 104 dbSNP
rs1054254713 106 dbSNP
rs758009244 108 dbSNP
rs1314590799 125 dbSNP
rs1394283984 126 dbSNP
rs1447847280 135 dbSNP
rs1288955206 141 dbSNP
rs1358264712 148 dbSNP
rs948672130 151 dbSNP
rs1424891610 152 dbSNP
rs1045052353 160 dbSNP
rs779564034 170 dbSNP
rs1189970925 175 dbSNP
rs1195557848 178 dbSNP
rs1240790009 189 dbSNP
rs111838633 198 dbSNP
rs1194519534 201 dbSNP
rs59771676 208 dbSNP
rs1216234939 213 dbSNP
rs1360427965 220 dbSNP
rs1177804965 222 dbSNP
rs573500411 226 dbSNP
rs534849318 227 dbSNP
rs1003558334 230 dbSNP
rs1047141628 231 dbSNP
rs1175028293 233 dbSNP
rs1401732883 249 dbSNP
rs1388703580 253 dbSNP
rs552780156 268 dbSNP
rs1297038791 274 dbSNP
rs1405183646 283 dbSNP
rs887192621 286 dbSNP
rs1165389776 288 dbSNP
rs142532129 299 dbSNP
rs1368226752 300 dbSNP
rs1172082060 303 dbSNP
rs1017549605 308 dbSNP
rs1325650676 309 dbSNP
rs544629538 316 dbSNP
rs748170785 320 dbSNP
rs769918138 322 dbSNP
rs3015303 329 dbSNP
rs961753343 330 dbSNP
rs1488057777 333 dbSNP
rs1360379415 339 dbSNP
rs1220468958 352 dbSNP
rs977061247 354 dbSNP
rs1277036101 356 dbSNP
rs1223544693 358 dbSNP
rs1332497314 362 dbSNP
rs1343509972 363 dbSNP
rs1385858552 373 dbSNP
rs924362741 378 dbSNP
rs1262636376 381 dbSNP
rs576351755 382 dbSNP
rs575349605 383 dbSNP
rs1170088660 390 dbSNP
rs1422032619 390 dbSNP
rs184615291 392 dbSNP
rs1282352080 397 dbSNP
rs9662305 398 dbSNP
rs1432816956 400 dbSNP
rs1238568536 403 dbSNP
rs1046031754 406 dbSNP
rs1200555416 410 dbSNP
rs1456405003 411 dbSNP
rs529449626 411 dbSNP
rs1346571233 415 dbSNP
rs939293774 415 dbSNP
rs190761468 421 dbSNP
rs114677984 422 dbSNP
rs1005664776 423 dbSNP
rs1454837458 427 dbSNP
rs1156446712 444 dbSNP
rs748594865 446 dbSNP
rs770022522 449 dbSNP
rs1038472396 450 dbSNP
rs755031921 464 dbSNP
rs997034418 467 dbSNP
rs879523048 469 dbSNP
rs1381098981 475 dbSNP
rs1405761931 475 dbSNP
rs533472006 486 dbSNP
rs778241240 510 dbSNP
rs3015302 516 dbSNP
rs1188236805 517 dbSNP
rs998467233 518 dbSNP
rs1031325163 523 dbSNP
rs748398824 532 dbSNP
rs1199326637 533 dbSNP
rs957098591 535 dbSNP
rs1287668322 538 dbSNP
rs772240775 549 dbSNP
rs1375207393 554 dbSNP
rs1279322412 560 dbSNP
rs1288897096 571 dbSNP
rs1449403426 574 dbSNP
rs1342727994 579 dbSNP
rs1022725505 583 dbSNP
rs1336444252 595 dbSNP
rs970260594 606 dbSNP
rs1160735425 607 dbSNP
rs1241190660 611 dbSNP
rs981300979 612 dbSNP
rs1449144076 624 dbSNP
rs1473742983 632 dbSNP
rs1278037498 635 dbSNP
rs1235612762 640 dbSNP
rs1350169619 645 dbSNP
rs569705728 645 dbSNP
rs1186262144 656 dbSNP
rs928533935 666 dbSNP
rs1223478701 670 dbSNP
rs1214072448 672 dbSNP
rs764302482 678 dbSNP
rs1352519219 682 dbSNP
rs530863514 682 dbSNP
rs868579579 683 dbSNP
rs1294456614 685 dbSNP
rs1489957396 687 dbSNP
rs548845825 688 dbSNP
rs1222413841 692 dbSNP
rs929237154 694 dbSNP
rs982762864 695 dbSNP
rs1341275113 698 dbSNP
rs908521291 701 dbSNP
rs1420382933 713 dbSNP
rs1344767391 722 dbSNP
rs941384405 726 dbSNP
rs1406835497 731 dbSNP
rs1362685806 737 dbSNP
rs1444904704 743 dbSNP
rs1162639540 745 dbSNP
rs1290097231 747 dbSNP
rs1425231144 754 dbSNP
rs1190805591 761 dbSNP
rs1487770446 768 dbSNP
rs1038829014 771 dbSNP
rs1223273531 774 dbSNP
rs1383215070 777 dbSNP
rs1453741149 785 dbSNP
rs567259150 788 dbSNP
rs773004010 789 dbSNP
rs1298684408 796 dbSNP
rs932813136 799 dbSNP
rs534485590 800 dbSNP
rs999083988 819 dbSNP
rs1031900955 822 dbSNP
rs181688070 823 dbSNP
rs1326991405 836 dbSNP
rs1347960215 836 dbSNP
rs1324967664 839 dbSNP
rs1466079741 851 dbSNP
rs1011248754 854 dbSNP
rs1247062037 867 dbSNP
rs1317350218 873 dbSNP
rs1484229803 877 dbSNP
rs1357741362 884 dbSNP
rs571212903 906 dbSNP
rs1252429730 908 dbSNP
rs1192627682 911 dbSNP
rs1476837068 912 dbSNP
rs538714732 916 dbSNP
rs1213391971 918 dbSNP
rs1023096377 929 dbSNP
rs969872374 937 dbSNP
rs1197266026 940 dbSNP
rs981673336 941 dbSNP
rs1302052566 955 dbSNP
rs138643823 967 dbSNP
rs950549659 972 dbSNP
rs774575250 976 dbSNP
rs575289576 977 dbSNP
rs1329287654 982 dbSNP
rs974141938 986 dbSNP
rs1359304790 995 dbSNP
rs1177527561 997 dbSNP
rs976904696 1002 dbSNP
rs932783312 1008 dbSNP
rs1193432897 1009 dbSNP
rs1440738943 1014 dbSNP
rs1051184886 1022 dbSNP
rs1177378034 1024 dbSNP
rs1443812340 1031 dbSNP
rs1256668564 1033 dbSNP
rs1170826288 1036 dbSNP
rs1374564149 1037 dbSNP
rs752536497 1043 dbSNP
rs1310698649 1045 dbSNP
rs1279931218 1046 dbSNP
rs1051986 1047 dbSNP
rs891268917 1054 dbSNP
rs1460441950 1060 dbSNP
rs934841824 1061 dbSNP
rs1053265126 1063 dbSNP
rs893389810 1064 dbSNP
rs1011656240 1070 dbSNP
rs542678048 1075 dbSNP
rs1374286342 1077 dbSNP
rs1158921942 1092 dbSNP
rs1421125090 1093 dbSNP
rs1382621094 1107 dbSNP
rs905591164 1113 dbSNP
rs1002602776 1117 dbSNP
rs1484761106 1121 dbSNP
rs1256884303 1128 dbSNP
rs1338976322 1129 dbSNP
rs1217711276 1135 dbSNP
rs1356042647 1140 dbSNP
rs1035452857 1145 dbSNP
rs375325485 1146 dbSNP
rs1314814601 1151 dbSNP
rs556061364 1157 dbSNP
rs1004722867 1159 dbSNP
rs1016188631 1163 dbSNP
rs963362355 1168 dbSNP
rs1401467073 1173 dbSNP
rs558246715 1175 dbSNP
rs1251188732 1184 dbSNP
rs1453546448 1202 dbSNP
rs1323631606 1204 dbSNP
rs1167600044 1208 dbSNP
rs1474512055 1213 dbSNP
rs1417260082 1222 dbSNP
rs1343339377 1231 dbSNP
rs1203544376 1235 dbSNP
rs199776204 1244 dbSNP
rs1489409239 1251 dbSNP
rs536315899 1257 dbSNP
rs559908098 1273 dbSNP
rs954201773 1282 dbSNP
rs986817505 1286 dbSNP
rs1242600938 1288 dbSNP
rs912652848 1289 dbSNP
rs1278292262 1295 dbSNP
rs1219881370 1304 dbSNP
rs934789751 1314 dbSNP
rs187167828 1318 dbSNP
rs140307585 1322 dbSNP
rs947691521 1324 dbSNP
rs1391988970 1325 dbSNP
rs1045061425 1328 dbSNP
rs905498829 1330 dbSNP
rs1178736229 1331 dbSNP
rs1394332316 1336 dbSNP
rs1171520217 1346 dbSNP
rs1403959778 1347 dbSNP
rs537372244 1361 dbSNP
rs1371381601 1368 dbSNP
rs1002548350 1373 dbSNP
rs768693775 1374 dbSNP
rs373071776 1378 dbSNP
rs1211528459 1379 dbSNP
rs1467994879 1380 dbSNP
rs1258587015 1391 dbSNP
rs1200430945 1396 dbSNP
rs1336950797 1400 dbSNP
rs1233529430 1402 dbSNP
rs886230352 1402 dbSNP
rs1332411301 1404 dbSNP
rs1004712910 1416 dbSNP
rs369185470 1431 dbSNP
rs759585416 1436 dbSNP
rs1370671585 1438 dbSNP
rs963609092 1439 dbSNP
rs1278155295 1440 dbSNP
rs1394502755 1442 dbSNP
rs1346643338 1455 dbSNP
rs1167338530 1460 dbSNP
rs1466755543 1472 dbSNP
rs996083007 1473 dbSNP
rs1225870153 1477 dbSNP
rs1260755647 1484 dbSNP
rs1453625319 1486 dbSNP
rs1029336954 1500 dbSNP
rs189396181 1502 dbSNP
rs1216139761 1506 dbSNP
rs986765256 1512 dbSNP
rs912643076 1517 dbSNP
rs1346727267 1519 dbSNP
rs1185662565 1523 dbSNP
rs1277803351 1524 dbSNP
rs568721617 1525 dbSNP
rs956158500 1525 dbSNP
rs914723505 1535 dbSNP
rs558896481 1538 dbSNP
rs1334443793 1549 dbSNP
rs1328296115 1559 dbSNP
rs866423912 1565 dbSNP
rs369929802 1566 dbSNP
rs1172071921 1569 dbSNP
rs548983099 1579 dbSNP
rs554568087 1583 dbSNP
rs968151950 1589 dbSNP
rs938326739 1591 dbSNP
rs1056854383 1601 dbSNP
rs764832544 1603 dbSNP
rs1443686470 1605 dbSNP
rs1347144461 1608 dbSNP
rs767508674 1608 dbSNP
rs980459554 1628 dbSNP
rs1037871999 1635 dbSNP
rs898966641 1638 dbSNP
rs926558495 1640 dbSNP
rs1298027269 1644 dbSNP
rs150207448 1647 dbSNP
rs1407372509 1650 dbSNP
rs1281918896 1651 dbSNP
rs991969262 1667 dbSNP
rs534313860 1669 dbSNP
rs1299844377 1673 dbSNP
rs1028868717 1686 dbSNP
rs908362001 1691 dbSNP
rs940782514 1695 dbSNP
rs1406955896 1708 dbSNP
rs1163826033 1710 dbSNP
rs1473732194 1726 dbSNP
rs1036371540 1729 dbSNP
rs1223812859 1735 dbSNP
rs1415022657 1738 dbSNP
rs920683905 1746 dbSNP
rs1186535785 1747 dbSNP
rs890410632 1751 dbSNP
rs118021258 1770 dbSNP
rs1050434522 1775 dbSNP
rs1314811135 1802 dbSNP
rs1215400829 1806 dbSNP
rs1019601587 1826 dbSNP
rs1213173269 1826 dbSNP
rs1292311984 1828 dbSNP
rs1445686662 1839 dbSNP
rs889378934 1846 dbSNP
rs1284001625 1849 dbSNP
rs1337509470 1851 dbSNP
rs1490775087 1853 dbSNP
rs1291538421 1875 dbSNP
rs1232705904 1877 dbSNP
rs1341174584 1878 dbSNP
rs1272192270 1881 dbSNP
rs113566681 1884 dbSNP
rs1268013853 1896 dbSNP
rs1040565727 1904 dbSNP
rs892601366 1905 dbSNP
rs1009729232 1907 dbSNP
rs988828512 1908 dbSNP
rs1177804712 1920 dbSNP
rs1410224516 1927 dbSNP
rs1163622507 1929 dbSNP
rs1477885608 1930 dbSNP
rs1425123653 1937 dbSNP
rs763655352 1944 dbSNP
rs1022136652 1948 dbSNP
rs1386314135 1956 dbSNP
rs903582397 1963 dbSNP
rs1271870716 1965 dbSNP
rs980718502 1972 dbSNP
rs927562052 1975 dbSNP
rs938945601 1978 dbSNP
rs1213036297 1980 dbSNP
rs1361465829 1982 dbSNP
rs1002308789 1984 dbSNP
rs992477562 1985 dbSNP
rs1033323761 1996 dbSNP
rs907516666 1999 dbSNP
rs1368476854 2013 dbSNP
rs1349759026 2018 dbSNP
rs940349040 2019 dbSNP
rs960927711 2022 dbSNP
rs1176300003 2053 dbSNP
rs1037419511 2055 dbSNP
rs571414771 2059 dbSNP
rs1167631296 2064 dbSNP
rs1409031561 2065 dbSNP
rs1425381837 2067 dbSNP
rs991998923 2068 dbSNP
rs750762497 2076 dbSNP
rs1251504536 2083 dbSNP
rs369262413 2088 dbSNP
rs961229414 2089 dbSNP
rs1234690343 2100 dbSNP
rs973876305 2102 dbSNP
rs1202470098 2103 dbSNP
rs1307168623 2104 dbSNP
rs1279655083 2118 dbSNP
rs868517501 2122 dbSNP
rs930714508 2123 dbSNP
rs1302332763 2124 dbSNP
rs1447440155 2127 dbSNP
rs1206577734 2155 dbSNP
rs201164604 2155 dbSNP
rs1250423412 2156 dbSNP
rs1491539890 2156 dbSNP
rs3991108 2156 dbSNP
rs57151047 2156 dbSNP
rs577214328 2156 dbSNP
rs75007078 2156 dbSNP
rs781741682 2156 dbSNP
rs1361332764 2157 dbSNP
rs78827860 2158 dbSNP
rs1420232460 2163 dbSNP
rs1243448748 2166 dbSNP
rs1433339225 2172 dbSNP
rs1410753189 2174 dbSNP
rs902661564 2175 dbSNP
rs7543306 2176 dbSNP
rs1008665489 2177 dbSNP
rs1206505726 2180 dbSNP
rs1234745517 2181 dbSNP
rs1479692281 2183 dbSNP
rs1178276423 2186 dbSNP
rs1243929961 2191 dbSNP
rs1446842304 2195 dbSNP
rs1484780401 2203 dbSNP
rs1279371032 2208 dbSNP
rs113260144 2209 dbSNP
rs1318469389 2211 dbSNP
rs377070965 2212 dbSNP
rs1411081496 2213 dbSNP
rs181312052 2216 dbSNP
rs1030890532 2217 dbSNP
rs1412557063 2218 dbSNP
rs1445312903 2231 dbSNP
rs1374426869 2233 dbSNP
rs910514120 2239 dbSNP
rs540247347 2245 dbSNP
rs1337019117 2246 dbSNP
rs568989555 2250 dbSNP
rs1384482422 2254 dbSNP
rs1157631168 2255 dbSNP
rs1419001192 2262 dbSNP
rs373487735 2263 dbSNP
rs149348732 2266 dbSNP
rs1283423441 2267 dbSNP
rs945549159 2271 dbSNP
rs1010656687 2276 dbSNP
rs1043888989 2278 dbSNP
rs903615465 2282 dbSNP
rs1001939939 2285 dbSNP
rs1339831382 2291 dbSNP
rs969243371 2294 dbSNP
rs1258732043 2296 dbSNP
rs1270730733 2299 dbSNP
rs1033769060 2301 dbSNP
rs1316152652 2313 dbSNP
rs896119523 2316 dbSNP
rs756495328 2317 dbSNP
rs766783185 2321 dbSNP
rs980283792 2341 dbSNP
rs1034543692 2345 dbSNP
rs1387677657 2356 dbSNP
rs1015506352 2360 dbSNP
rs34279088 2372 dbSNP
rs1453701468 2375 dbSNP
rs1395803771 2379 dbSNP
rs1171264780 2382 dbSNP
rs1185680306 2383 dbSNP
rs1167692313 2385 dbSNP
rs185184641 2401 dbSNP
rs1237325090 2407 dbSNP
rs1459985877 2410 dbSNP
rs1475913313 2423 dbSNP
rs1194246390 2434 dbSNP
rs144698589 2440 dbSNP
rs960216202 2447 dbSNP
rs1430451498 2453 dbSNP
rs961259714 2457 dbSNP
rs1188803125 2468 dbSNP
rs541702418 2487 dbSNP
rs74403700 2490 dbSNP
rs1211721551 2498 dbSNP
rs961665345 2505 dbSNP
rs1176586482 2509 dbSNP
rs973515731 2510 dbSNP
rs952231209 2515 dbSNP
rs755546368 2518 dbSNP
rs1333082590 2525 dbSNP
rs1293916298 2528 dbSNP
rs144056281 2535 dbSNP
rs1372152680 2536 dbSNP
rs1328583651 2539 dbSNP
rs1050250815 2542 dbSNP
rs1393832143 2545 dbSNP
rs77148994 2546 dbSNP
rs944726562 2556 dbSNP
rs1052265418 2558 dbSNP
rs1169974418 2559 dbSNP
rs1224010203 2561 dbSNP
rs892423230 2564 dbSNP
rs1254636395 2570 dbSNP
rs1191746024 2572 dbSNP
rs1467925272 2573 dbSNP
rs1250632534 2576 dbSNP
rs1196990375 2578 dbSNP
rs1010231929 2590 dbSNP
rs1250459981 2594 dbSNP
rs1234552194 2598 dbSNP
rs1284074313 2600 dbSNP
rs1043481380 2605 dbSNP
rs1325741629 2609 dbSNP
rs1305995253 2612 dbSNP
rs1198960856 2617 dbSNP
rs1370839423 2618 dbSNP
rs976061091 2621 dbSNP
rs1329662837 2623 dbSNP
rs1393259367 2624 dbSNP
rs1394400050 2626 dbSNP
rs1297880349 2635 dbSNP
rs1278098848 2637 dbSNP
rs748191639 2639 dbSNP
rs563410030 2645 dbSNP
rs1002003201 2646 dbSNP
rs1261453010 2651 dbSNP
rs1477804696 2657 dbSNP
rs1034449426 2658 dbSNP
rs945583294 2659 dbSNP
rs1044304543 2660 dbSNP
rs530935592 2663 dbSNP
rs1014432409 2672 dbSNP
rs937766695 2675 dbSNP
rs542571370 2677 dbSNP
rs896238245 2680 dbSNP
rs1486413072 2688 dbSNP
rs1430869765 2689 dbSNP
rs1282936002 2691 dbSNP
rs114307972 2693 dbSNP
rs973079576 2700 dbSNP
rs1372715927 2705 dbSNP
rs528521494 2712 dbSNP
rs1241793558 2714 dbSNP
rs897095662 2723 dbSNP
rs1385181308 2725 dbSNP
rs995395779 2734 dbSNP
rs1027241081 2740 dbSNP
rs1377452268 2743 dbSNP
rs1311256707 2754 dbSNP
rs1433921386 2757 dbSNP
rs1385381869 2758 dbSNP
rs1359656105 2764 dbSNP
rs1387516200 2768 dbSNP
rs911645458 2770 dbSNP
rs1362719562 2771 dbSNP
rs1187982230 2783 dbSNP
rs1475999641 2784 dbSNP
rs1285050666 2791 dbSNP
rs1347470615 2796 dbSNP
rs1231109654 2808 dbSNP
rs747303659 2810 dbSNP
rs770818897 2817 dbSNP
rs1207415316 2831 dbSNP
rs1349092017 2836 dbSNP
rs1007130710 2838 dbSNP
rs1234019294 2840 dbSNP
rs1291724604 2842 dbSNP
rs913808477 2842 dbSNP
rs1225650902 2843 dbSNP
rs546848586 2844 dbSNP
rs1319970878 2845 dbSNP
rs966102717 2847 dbSNP
rs1488162199 2849 dbSNP
rs1398899098 2857 dbSNP
rs1384105310 2861 dbSNP
rs1223902875 2889 dbSNP
rs1462608582 2889 dbSNP
rs781199465 2910 dbSNP
rs976095505 2926 dbSNP
rs1186869680 2936 dbSNP
rs1271604593 2936 dbSNP
rs1475499942 2936 dbSNP
rs1243068752 2937 dbSNP
rs745783309 2938 dbSNP
rs966956305 2944 dbSNP
rs116025530 2950 dbSNP
rs1268103527 2951 dbSNP
rs904496481 2953 dbSNP
rs1337129899 2955 dbSNP
rs3015300 2959 dbSNP
rs1470995417 2963 dbSNP
rs1227969804 2969 dbSNP
rs938232942 2970 dbSNP
rs1428428397 2976 dbSNP
rs1055684532 2978 dbSNP
rs917695512 2992 dbSNP
rs1156441967 2993 dbSNP
rs1014422500 2995 dbSNP
rs1391661564 3001 dbSNP
rs1163393028 3005 dbSNP
rs1424987172 3010 dbSNP
rs1410207487 3017 dbSNP
rs756874668 3019 dbSNP
rs1015128427 3020 dbSNP
rs1474663233 3030 dbSNP
rs949114908 3031 dbSNP
rs1036657684 3032 dbSNP
rs1470173416 3033 dbSNP
rs762398211 3038 dbSNP
rs896791869 3050 dbSNP
rs1444710985 3062 dbSNP
rs550815618 3064 dbSNP
rs140871352 3066 dbSNP
rs1247127700 3071 dbSNP
rs1275444840 3072 dbSNP
rs1213015865 3073 dbSNP
rs953122925 3074 dbSNP
rs1303793006 3075 dbSNP
rs541468348 3078 dbSNP
rs1048343140 3084 dbSNP
rs985800324 3091 dbSNP
rs889680315 3093 dbSNP
rs1354908465 3096 dbSNP
rs1018642453 3098 dbSNP
rs1442353375 3099 dbSNP
rs1355758917 3100 dbSNP
rs375628027 3104 dbSNP
rs1326520608 3115 dbSNP
rs1438982254 3117 dbSNP
rs1176400022 3118 dbSNP
rs1019428802 3125 dbSNP
rs536364298 3135 dbSNP
rs751149265 3137 dbSNP
rs1389961075 3145 dbSNP
rs1237146333 3146 dbSNP
rs997564388 3147 dbSNP
rs1174598385 3149 dbSNP
rs1455988511 3153 dbSNP
rs1393845760 3156 dbSNP
rs1445041697 3157 dbSNP
rs3015299 3164 dbSNP
rs1202705210 3166 dbSNP
rs1366468590 3169 dbSNP
rs966736666 3172 dbSNP
rs1482820688 3175 dbSNP
rs1457405493 3179 dbSNP
rs1212705410 3184 dbSNP
rs566461118 3196 dbSNP
rs925582264 3200 dbSNP
rs1397321538 3202 dbSNP
rs1300575046 3206 dbSNP
rs959877797 3217 dbSNP
rs773856204 3219 dbSNP
rs1329602058 3226 dbSNP
rs564549452 3227 dbSNP
rs533581488 3230 dbSNP
rs1277203923 3235 dbSNP
rs1376379099 3250 dbSNP
rs918045850 3257 dbSNP
rs141546923 3264 dbSNP
rs768107379 3268 dbSNP
rs1314296206 3272 dbSNP
rs41294472 3288 dbSNP
rs1357775032 3300 dbSNP
rs11205924 3305 dbSNP
rs1420138108 3307 dbSNP
rs1048520353 3310 dbSNP
rs1410280355 3312 dbSNP
rs926560878 3324 dbSNP
rs1472405286 3333 dbSNP
rs889721874 3334 dbSNP
rs868428371 3337 dbSNP
rs1255128786 3340 dbSNP
rs1216428383 3342 dbSNP
rs189938064 3344 dbSNP
rs377112412 3345 dbSNP
rs895888497 3346 dbSNP
rs900975062 3357 dbSNP
rs766729864 3358 dbSNP
rs1256843569 3363 dbSNP
rs950135468 3406 dbSNP
rs1250213178 3407 dbSNP
rs1461522829 3409 dbSNP
rs1185046137 3411 dbSNP
rs1253890149 3420 dbSNP
rs1036466532 3421 dbSNP
rs1422969327 3422 dbSNP
rs575472253 3430 dbSNP
rs897958918 3432 dbSNP
rs1454787139 3439 dbSNP
rs182403827 3442 dbSNP
rs1192532695 3447 dbSNP
rs1157548896 3453 dbSNP
rs1456825329 3460 dbSNP
rs1021090075 3462 dbSNP
rs1028319497 3469 dbSNP
rs114695200 3484 dbSNP
rs1056644 3487 dbSNP
rs1399632758 3493 dbSNP
rs1470456523 3494 dbSNP
rs759979107 3507 dbSNP
rs1000902898 3511 dbSNP
rs573172741 3514 dbSNP
rs1334994361 3522 dbSNP
rs1018590078 3529 dbSNP
rs1231091630 3536 dbSNP
rs959650730 3542 dbSNP
rs150742420 3548 dbSNP
rs3015298 3556 dbSNP
rs532450617 3557 dbSNP
rs41294474 3562 dbSNP
rs1395326782 3563 dbSNP
rs1463938656 3565 dbSNP
rs1217303960 3578 dbSNP
rs979327073 3581 dbSNP
rs758384629 3583 dbSNP
rs78818801 3586 dbSNP
rs1323610983 3589 dbSNP
rs937939176 3590 dbSNP
rs991468827 3594 dbSNP
rs1245957067 3597 dbSNP
rs529962910 3599 dbSNP
rs1468816405 3605 dbSNP
rs1482824300 3609 dbSNP
rs950044452 3610 dbSNP
rs1207515238 3622 dbSNP
rs1205457156 3623 dbSNP
rs1487855678 3628 dbSNP
rs548246706 3632 dbSNP
rs910840385 3640 dbSNP
rs1229143406 3642 dbSNP
rs370514680 3644 dbSNP
rs757615358 3651 dbSNP
rs897949221 3652 dbSNP
rs779261343 3654 dbSNP
rs114927135 3655 dbSNP
rs551012470 3665 dbSNP
rs945887234 3673 dbSNP
rs1049257000 3681 dbSNP
rs889346613 3684 dbSNP
rs1423021344 3685 dbSNP
rs1480765335 3692 dbSNP
rs1390088449 3707 dbSNP
rs1041560414 3712 dbSNP
rs1357593488 3716 dbSNP
rs1019166396 3724 dbSNP
rs1465712041 3735 dbSNP
rs1454684091 3738 dbSNP
rs1289860577 3741 dbSNP
rs901480413 3745 dbSNP
rs1196638308 3758 dbSNP
rs370959807 3764 dbSNP
rs1298064218 3771 dbSNP
rs1197194344 3772 dbSNP
rs1481840297 3773 dbSNP
rs1272974193 3786 dbSNP
rs1204943463 3791 dbSNP
rs551909653 3793 dbSNP
rs571563996 3795 dbSNP
rs186391041 3800 dbSNP
rs557277057 3801 dbSNP
rs1330600737 3806 dbSNP
rs902611144 3812 dbSNP
rs1307723384 3817 dbSNP
rs751825394 3821 dbSNP
rs967860357 3830 dbSNP
rs569075604 3837 dbSNP
rs1001317092 3838 dbSNP
rs1001096125 3843 dbSNP
rs1307623743 3859 dbSNP
rs1435156037 3861 dbSNP
rs1377035974 3866 dbSNP
rs1032351509 3867 dbSNP
rs1465426992 3869 dbSNP
rs959212886 3870 dbSNP
rs895170748 3872 dbSNP
rs192496989 3873 dbSNP
rs917848392 3884 dbSNP
rs1262325964 3891 dbSNP
rs1188201549 3895 dbSNP
rs757607168 3897 dbSNP
rs1215809756 3899 dbSNP
rs1269459344 3903 dbSNP
rs1281082647 3916 dbSNP
rs1199260125 3924 dbSNP
rs1261423049 3930 dbSNP
rs971384945 3932 dbSNP
rs972123638 3934 dbSNP
rs1288026900 3948 dbSNP
rs536478674 3949 dbSNP
rs1357139978 3950 dbSNP
rs1331894391 3952 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545212. RNA binding protein: AGO1. Condition:Control PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 91408.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions C8166
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462572. RNA binding protein: AGO2. Condition:C8166 NL4-3 ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM545212
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / Control
Location of target site ENST00000489308.2 | 3UTR | AUUUUGCAUUUUGCACUUCCUCCCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000489308.2 | 3UTR | CAUUUUUCGGUCAUUUGAUUUUGCAUUUUGCACUUCCUCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000489308.2 | 3UTR | UUCAGCAUUUUUCGGUCAUUUGAUUUUGCAUUUUGCACUUCCUCCCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000489308.2 | 3UTR | AUUUUGCAUUUUGCACUUCCUCCCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1462572
Method / RBP PAR-CLIP / AGO2
Cell line / Condition C8166 / C8166 NL4-3
Location of target site ENST00000489308.2 | 3UTR | UGCAUUUUGCACUUCCUCCCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
494 hsa-miR-1273h-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074355 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT100721 TJAP1 tight junction associated protein 1 2 2
MIRT115545 MAZ MYC associated zinc finger protein 2 2
MIRT124982 XIAP X-linked inhibitor of apoptosis 2 4
MIRT139911 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT177183 ARL5B ADP ribosylation factor like GTPase 5B 2 4
MIRT187994 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT207410 MAT2A methionine adenosyltransferase 2A 2 6
MIRT241928 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT260110 KLHL21 kelch like family member 21 2 2
MIRT260358 XRCC6 X-ray repair cross complementing 6 2 6
MIRT266428 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT294663 ZNF548 zinc finger protein 548 2 2
MIRT351039 PLEKHB2 pleckstrin homology domain containing B2 2 2
MIRT379943 PRRG4 proline rich and Gla domain 4 2 2
MIRT398983 KAT7 lysine acetyltransferase 7 2 2
MIRT441465 BEST3 bestrophin 3 2 2
MIRT446750 ZNF491 zinc finger protein 491 2 2
MIRT449224 RAD51B RAD51 paralog B 2 2
MIRT450623 AQR aquarius intron-binding spliceosomal factor 2 2
MIRT451090 ZNF584 zinc finger protein 584 2 2
MIRT451558 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451736 CES3 carboxylesterase 3 2 2
MIRT452411 QDPR quinoid dihydropteridine reductase 2 2
MIRT452559 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452851 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452922 DISC1 disrupted in schizophrenia 1 2 2
MIRT453043 TANGO2 transport and golgi organization 2 homolog 2 4
MIRT453097 HOXC4 homeobox C4 2 2
MIRT453297 ZNF394 zinc finger protein 394 2 2
MIRT453593 ZNF557 zinc finger protein 557 2 2
MIRT453787 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT453987 CECR1 adenosine deaminase 2 2 2
MIRT454083 TMEM209 transmembrane protein 209 2 2
MIRT454652 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454753 PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 2 2
MIRT455311 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT456468 SERAC1 serine active site containing 1 2 2
MIRT456554 TOMM20 translocase of outer mitochondrial membrane 20 2 2
MIRT456716 TMEM239 transmembrane protein 239 2 4
MIRT456796 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457487 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457999 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT458130 TLCD2 TLC domain containing 2 2 2
MIRT459027 ZNF490 zinc finger protein 490 2 4
MIRT459119 FADS6 fatty acid desaturase 6 2 2
MIRT459315 HAVCR2 hepatitis A virus cellular receptor 2 2 2
MIRT459385 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT459412 FAM83B family with sequence similarity 83 member B 2 2
MIRT459974 RFT1 RFT1 homolog 2 2
MIRT460480 FAM105A family with sequence similarity 105 member A 2 6
MIRT460586 FEM1A fem-1 homolog A 2 2
MIRT460920 NOA1 nitric oxide associated 1 2 4
MIRT461072 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT461590 DPH2 DPH2 homolog 2 2
MIRT461854 ZNF317 zinc finger protein 317 2 2
MIRT462176 ACADL acyl-CoA dehydrogenase, long chain 2 2
MIRT462446 GCDH glutaryl-CoA dehydrogenase 2 2
MIRT463854 WNT7B Wnt family member 7B 2 2
MIRT464310 UST uronyl 2-sulfotransferase 2 2
MIRT464815 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT465453 TOR2A torsin family 2 member A 2 2
MIRT466073 TMEM184C transmembrane protein 184C 2 2
MIRT466514 TBXA2R thromboxane A2 receptor 2 2
MIRT467072 SRRD SRR1 domain containing 2 2
MIRT469551 RARA retinoic acid receptor alpha 2 2
MIRT469741 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT470759 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT470875 PLXND1 plexin D1 2 2
MIRT470976 PITPNA phosphatidylinositol transfer protein alpha 2 2
MIRT471048 PIM3 Pim-3 proto-oncogene, serine/threonine kinase 2 2
MIRT471215 PHAX phosphorylated adaptor for RNA export 2 2
MIRT471246 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT471286 PGAM4 phosphoglycerate mutase family member 4 2 2
MIRT471467 PDE7B phosphodiesterase 7B 2 2
MIRT473069 MORN4 MORN repeat containing 4 2 4
MIRT473989 LRRC20 leucine rich repeat containing 20 2 2
MIRT474518 KLHDC8A kelch domain containing 8A 2 2
MIRT474990 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT475547 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 2
MIRT476350 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT477298 EPHB2 EPH receptor B2 2 2
MIRT477933 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT478282 DDX19A DEAD-box helicase 19A 2 4
MIRT478472 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478559 CTNND1 catenin delta 1 2 2
MIRT478618 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT478834 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479007 COL5A1 collagen type V alpha 1 chain 2 2
MIRT479166 CLSPN claspin 2 2
MIRT482454 ADAR adenosine deaminase, RNA specific 2 4
MIRT483019 KHSRP KH-type splicing regulatory protein 2 4
MIRT483798 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 6
MIRT486087 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486304 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT486490 MYH11 myosin heavy chain 11 2 2
MIRT486881 TSPYL4 TSPY like 4 2 2
MIRT487125 NCOR2 nuclear receptor corepressor 2 2 2
MIRT487542 TM6SF2 transmembrane 6 superfamily member 2 2 4
MIRT487676 B3GALT5 beta-1,3-galactosyltransferase 5 2 4
MIRT489251 TTLL1 tubulin tyrosine ligase like 1 2 4
MIRT489276 RBM8A RNA binding motif protein 8A 2 8
MIRT489496 CRLF3 cytokine receptor like factor 3 2 4
MIRT489571 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489694 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT490166 TMEM63C transmembrane protein 63C 2 2
MIRT491199 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491260 DHX40 DEAH-box helicase 40 2 2
MIRT491385 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT491548 YAE1D1 Yae1 domain containing 1 2 2
MIRT492722 PHF12 PHD finger protein 12 2 2
MIRT493866 FAM73B mitoguardin 2 2 4
MIRT494549 BAK1 BCL2 antagonist/killer 1 2 2
MIRT498586 KRT8 keratin 8 2 2
MIRT498722 SNTN sentan, cilia apical structure protein 2 6
MIRT499982 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT503414 SLC25A45 solute carrier family 25 member 45 2 6
MIRT508491 FTO FTO, alpha-ketoglutarate dependent dioxygenase 2 2
MIRT508877 METTL14 methyltransferase like 14 2 2
MIRT509622 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT510104 IRAK3 interleukin 1 receptor associated kinase 3 2 8
MIRT510139 PDGFRA platelet derived growth factor receptor alpha 2 4
MIRT510353 ZNF703 zinc finger protein 703 2 6
MIRT510620 TMEM167A transmembrane protein 167A 2 4
MIRT510786 SF3B3 splicing factor 3b subunit 3 2 6
MIRT511021 NRF1 nuclear respiratory factor 1 2 2
MIRT513925 GHITM growth hormone inducible transmembrane protein 2 2
MIRT514342 DNAH17 dynein axonemal heavy chain 17 2 4
MIRT515015 SUMF2 sulfatase modifying factor 2 2 2
MIRT515246 DUSP28 dual specificity phosphatase 28 2 2
MIRT516202 RPP30 ribonuclease P/MRP subunit p30 2 2
MIRT516435 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 4
MIRT516666 ZNF860 zinc finger protein 860 2 4
MIRT518373 ZNF250 zinc finger protein 250 2 2
MIRT518930 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT519676 ZNF70 zinc finger protein 70 2 2
MIRT519902 ZFAND4 zinc finger AN1-type containing 4 2 4
MIRT519945 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT520321 UBXN2A UBX domain protein 2A 2 2
MIRT520606 TMEM41B transmembrane protein 41B 2 2
MIRT520663 TMEM11 transmembrane protein 11 2 2
MIRT520852 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT521443 RAD51 RAD51 recombinase 2 2
MIRT521671 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT522281 NKAP NFKB activating protein 2 2
MIRT522333 NCKIPSD NCK interacting protein with SH3 domain 2 8
MIRT522535 MED28 mediator complex subunit 28 2 6
MIRT523478 GNG4 G protein subunit gamma 4 2 2
MIRT523672 FOPNL FGFR1OP N-terminal like 2 2
MIRT523715 FBXW2 F-box and WD repeat domain containing 2 2 4
MIRT523867 ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 2 4
MIRT524043 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524167 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524928 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT526825 PHC1 polyhomeotic homolog 1 2 2
MIRT531017 TDGF1P3 teratocarcinoma-derived growth factor 1 pseudogene 3 2 2
MIRT536085 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT540681 BMP3 bone morphogenetic protein 3 2 2
MIRT541708 TMEM33 transmembrane protein 33 2 2
MIRT541755 KLF8 Kruppel like factor 8 2 2
MIRT541888 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT545714 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT559054 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT561748 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT562365 ETV3 ETS variant 3 2 2
MIRT562821 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT562900 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT564452 SLC35E2 solute carrier family 35 member E2 2 5
MIRT569111 ONECUT3 one cut homeobox 3 2 2
MIRT569224 SUSD1 sushi domain containing 1 2 2
MIRT570271 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT570498 TFIP11 tuftelin interacting protein 11 2 2
MIRT570844 GPRC5C G protein-coupled receptor class C group 5 member C 2 2
MIRT571311 TPCN2 two pore segment channel 2 2 2
MIRT572077 EXOC8 exocyst complex component 8 2 2
MIRT572116 DNAJC24 DnaJ heat shock protein family (Hsp40) member C24 2 2
MIRT573054 TRIB1 tribbles pseudokinase 1 2 2
MIRT573483 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573656 HES6 hes family bHLH transcription factor 6 2 2
MIRT574343 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT576494 Slc35e2 solute carrier family 35, member E2 2 4
MIRT608033 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT611326 NANOS1 nanos C2HC-type zinc finger 1 2 2
MIRT613660 KIAA1210 KIAA1210 2 2
MIRT615638 ATF6 activating transcription factor 6 2 2
MIRT618573 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT618865 MBL2 mannose binding lectin 2 2 2
MIRT618962 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619172 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620298 AQP6 aquaporin 6 2 2
MIRT620683 RFTN2 raftlin family member 2 2 2
MIRT621637 UBXN2B UBX domain protein 2B 2 2
MIRT621993 STK4 serine/threonine kinase 4 2 2
MIRT622421 NUDT19 nudix hydrolase 19 2 2
MIRT622804 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT624786 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT624968 ZNF665 zinc finger protein 665 2 4
MIRT625479 SMAD9 SMAD family member 9 2 2
MIRT626594 ACAA2 acetyl-CoA acyltransferase 2 2 4
MIRT626708 TRIM65 tripartite motif containing 65 2 2
MIRT626975 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627489 STRIP2 striatin interacting protein 2 2 2
MIRT628505 ZNF878 zinc finger protein 878 2 2
MIRT628533 ZNF701 zinc finger protein 701 2 2
MIRT628591 TMEM251 transmembrane protein 251 2 2
MIRT628818 SLC25A34 solute carrier family 25 member 34 2 2
MIRT628896 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT628958 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) 2 2
MIRT629005 OSBPL10 oxysterol binding protein like 10 2 2
MIRT629059 KIF1C kinesin family member 1C 2 2
MIRT629192 PAPOLA poly(A) polymerase alpha 2 2
MIRT629346 TMPRSS11BNL TMPRSS11B N-terminal like, pseudogene 2 2
MIRT629447 WIZ widely interspaced zinc finger motifs 2 2
MIRT629696 XKR4 XK related 4 2 2
MIRT629737 SCD5 stearoyl-CoA desaturase 5 2 2
MIRT629896 SPATA5 spermatogenesis associated 5 2 2
MIRT629953 GLP2R glucagon like peptide 2 receptor 2 2
MIRT630023 MTL5 testis expressed metallothionein like protein 2 2
MIRT630181 TLN1 talin 1 2 2
MIRT630325 PAQR5 progestin and adipoQ receptor family member 5 2 2
MIRT630389 MYH9 myosin heavy chain 9 2 4
MIRT630695 EXTL3 exostosin like glycosyltransferase 3 2 2
MIRT631054 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT631130 SYNJ2 synaptojanin 2 2 2
MIRT631374 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT631557 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT631615 PCDHB11 protocadherin beta 11 2 2
MIRT631935 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632109 SSR1 signal sequence receptor subunit 1 2 2
MIRT632168 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632445 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT632652 NAV1 neuron navigator 1 2 2
MIRT632688 MTMR10 myotubularin related protein 10 2 2
MIRT632828 IGF1 insulin like growth factor 1 2 2
MIRT632905 FRRS1 ferric chelate reductase 1 2 2
MIRT633027 DNAL1 dynein axonemal light chain 1 2 2
MIRT633379 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633440 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT633726 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT633832 WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules 2 2
MIRT633862 ATP6V1A ATPase H+ transporting V1 subunit A 2 2
MIRT634042 NUP155 nucleoporin 155 2 2
MIRT634266 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634374 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT634439 PDE7A phosphodiesterase 7A 2 2
MIRT634573 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT634620 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT634693 DSEL dermatan sulfate epimerase-like 2 2
MIRT634768 CD3D CD3d molecule 2 2
MIRT635024 WWTR1 WW domain containing transcription regulator 1 2 2
MIRT635384 NHLRC2 NHL repeat containing 2 2 2
MIRT635577 TTC9C tetratricopeptide repeat domain 9C 2 2
MIRT635793 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT635837 ZNF264 zinc finger protein 264 2 2
MIRT636043 ZSCAN29 zinc finger and SCAN domain containing 29 2 4
MIRT636070 ZNF280C zinc finger protein 280C 2 2
MIRT636697 ARSK arylsulfatase family member K 2 2
MIRT637438 ZNF324B zinc finger protein 324B 2 2
MIRT637582 PLD6 phospholipase D family member 6 2 2
MIRT637672 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT637887 SLC19A3 solute carrier family 19 member 3 2 4
MIRT638353 RBMS2 RNA binding motif single stranded interacting protein 2 2 4
MIRT638597 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT638821 CRTAP cartilage associated protein 2 2
MIRT638871 CEP97 centrosomal protein 97 2 4
MIRT639660 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640200 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT641592 TNS4 tensin 4 2 2
MIRT644993 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT645059 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646948 UPK3BL uroplakin 3B like 1 2 2
MIRT647306 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT648300 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT649043 SLC1A2 solute carrier family 1 member 2 2 2
MIRT649884 SLFN12L schlafen family member 12 like 2 2
MIRT650196 DOCK7 dedicator of cytokinesis 7 2 2
MIRT654789 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655667 NUP43 nucleoporin 43 2 2
MIRT655925 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT656433 MARCH6 membrane associated ring-CH-type finger 6 2 2
MIRT657713 GPC4 glypican 4 2 2
MIRT659302 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT659844 CAPZB capping actin protein of muscle Z-line beta subunit 2 2
MIRT660660 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT661308 CPM carboxypeptidase M 2 2
MIRT661473 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661906 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT662064 ZNF284 zinc finger protein 284 2 2
MIRT662491 ANGPT4 angiopoietin 4 2 2
MIRT662657 LRRC47 leucine rich repeat containing 47 2 2
MIRT662804 MSRB2 methionine sulfoxide reductase B2 2 2
MIRT663164 FGFR1OP FGFR1 oncogene partner 2 2
MIRT663376 ZNF770 zinc finger protein 770 2 4
MIRT663418 ZNF607 zinc finger protein 607 2 2
MIRT663990 WDR75 WD repeat domain 75 2 2
MIRT664157 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 4
MIRT664489 POLR3K RNA polymerase III subunit K 2 2
MIRT665058 CCDC77 coiled-coil domain containing 77 2 2
MIRT665080 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT665420 WDR55 WD repeat domain 55 2 2
MIRT665716 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665923 TBC1D19 TBC1 domain family member 19 2 4
MIRT666239 SLC38A7 solute carrier family 38 member 7 2 4
MIRT666840 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT667378 MOB1B MOB kinase activator 1B 2 2
MIRT667573 LONRF2 LON peptidase N-terminal domain and ring finger 2 2 2
MIRT667894 ING1 inhibitor of growth family member 1 2 2
MIRT667977 HECTD3 HECT domain E3 ubiquitin protein ligase 3 2 2
MIRT668197 GCNT4 glucosaminyl (N-acetyl) transferase 4, core 2 2 2
MIRT668279 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT668386 FAT3 FAT atypical cadherin 3 2 2
MIRT668444 FAM208A family with sequence similarity 208 member A 2 2
MIRT668998 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669180 CCNF cyclin F 2 2
MIRT669444 ATL3 atlastin GTPase 3 2 2
MIRT669661 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669890 KIAA0754 KIAA0754 2 4
MIRT669973 SSR3 signal sequence receptor subunit 3 2 2
MIRT670153 SLC29A4 solute carrier family 29 member 4 2 2
MIRT670240 TRIM13 tripartite motif containing 13 2 2
MIRT670274 CBY3 chibby family member 3 2 2
MIRT670358 ULBP3 UL16 binding protein 3 2 4
MIRT670627 BVES blood vessel epicardial substance 2 2
MIRT670731 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670770 TRIM66 tripartite motif containing 66 2 2
MIRT670913 DESI1 desumoylating isopeptidase 1 2 2
MIRT671216 CLSTN1 calsyntenin 1 2 2
MIRT671398 ERCC6L2 ERCC excision repair 6 like 2 2 2
MIRT671427 TOX4 TOX high mobility group box family member 4 2 2
MIRT671654 TRUB2 TruB pseudouridine synthase family member 2 2 4
MIRT671702 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT672136 PLEKHH1 pleckstrin homology, MyTH4 and FERM domain containing H1 2 2
MIRT672395 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672508 GGCX gamma-glutamyl carboxylase 2 2
MIRT672572 RNF24 ring finger protein 24 2 2
MIRT672789 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT673019 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT673190 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT673372 ZNF124 zinc finger protein 124 2 2
MIRT673495 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT673852 CAPN7 calpain 7 2 2
MIRT673929 ZNF500 zinc finger protein 500 2 2
MIRT673986 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT674076 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674123 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT674297 THAP5 THAP domain containing 5 2 2
MIRT674370 POLR3D RNA polymerase III subunit D 2 2
MIRT674641 NKRF NFKB repressing factor 2 2
MIRT674665 PLCE1 phospholipase C epsilon 1 2 2
MIRT674725 ZNF451 zinc finger protein 451 2 4
MIRT674779 NPR1 natriuretic peptide receptor 1 2 2
MIRT674889 RASSF9 Ras association domain family member 9 2 2
MIRT675017 SNX1 sorting nexin 1 2 2
MIRT675341 KLHL26 kelch like family member 26 2 2
MIRT675416 CLEC7A C-type lectin domain containing 7A 2 2
MIRT675497 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT675615 EHD2 EH domain containing 2 2 2
MIRT675735 AHR aryl hydrocarbon receptor 2 2
MIRT675857 ATP1B4 ATPase Na+/K+ transporting family member beta 4 2 2
MIRT675990 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676213 TMEM91 transmembrane protein 91 2 2
MIRT676406 MRO maestro 2 2
MIRT677299 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT677387 PCNP PEST proteolytic signal containing nuclear protein 2 2
MIRT677859 ABI2 abl interactor 2 2 2
MIRT677965 ITGB3 integrin subunit beta 3 2 2
MIRT678175 CRCP CGRP receptor component 2 2
MIRT678273 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT678665 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT679003 TTC39B tetratricopeptide repeat domain 39B 2 2
MIRT679053 RMDN1 regulator of microtubule dynamics 1 2 2
MIRT679461 RHOF ras homolog family member F, filopodia associated 2 2
MIRT679513 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679914 ZKSCAN3 zinc finger with KRAB and SCAN domains 3 2 2
MIRT680029 OSBPL2 oxysterol binding protein like 2 2 4
MIRT680245 NDUFA7 NADH:ubiquinone oxidoreductase subunit A7 2 2
MIRT680279 AKIP1 A-kinase interacting protein 1 2 2
MIRT680499 PRIM2 DNA primase subunit 2 2 2
MIRT680586 ZNF573 zinc finger protein 573 2 2
MIRT680629 KIAA1456 KIAA1456 2 2
MIRT680819 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680998 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681122 INTS7 integrator complex subunit 7 2 2
MIRT681161 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681221 DUSP19 dual specificity phosphatase 19 2 2
MIRT681304 IKZF3 IKAROS family zinc finger 3 2 2
MIRT681341 BRI3BP BRI3 binding protein 2 2
MIRT681608 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681779 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681892 SLC11A2 solute carrier family 11 member 2 2 2
MIRT682084 ITGA3 integrin subunit alpha 3 2 4
MIRT682139 SMS spermine synthase 2 2
MIRT682217 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682367 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682535 EXOSC2 exosome component 2 2 2
MIRT682618 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT683643 ZNF695 zinc finger protein 695 2 2
MIRT684008 FOLR1 folate receptor 1 2 2
MIRT684442 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684855 ZNF749 zinc finger protein 749 2 2
MIRT684956 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685044 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685095 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685382 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT685456 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685810 SLC27A1 solute carrier family 27 member 1 2 2
MIRT685913 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686665 TMEM120B transmembrane protein 120B 2 2
MIRT686955 SFT2D2 SFT2 domain containing 2 2 2
MIRT687118 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT687739 KIAA1328 KIAA1328 2 2
MIRT688063 GLUL glutamate-ammonia ligase 2 2
MIRT688191 FNIP1 folliculin interacting protein 1 2 2
MIRT688769 CDH7 cadherin 7 2 2
MIRT688979 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT689572 NUDT7 nudix hydrolase 7 2 2
MIRT689683 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT689930 MANSC1 MANSC domain containing 1 2 2
MIRT690089 PNMA2 paraneoplastic Ma antigen 2 2 2
MIRT690190 C5orf45 MRN complex interacting protein 2 2
MIRT690246 CAMLG calcium modulating ligand 2 2
MIRT690411 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT690840 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 2
MIRT690889 FUT2 fucosyltransferase 2 2 2
MIRT691107 ADIPOQ adiponectin, C1Q and collagen domain containing 2 2
MIRT691229 DFNB59 pejvakin 2 2
MIRT691300 ZNF681 zinc finger protein 681 2 2
MIRT691366 GP5 glycoprotein V platelet 2 2
MIRT691797 WARS tryptophanyl-tRNA synthetase 2 2
MIRT692142 CEP104 centrosomal protein 104 2 2
MIRT692572 NCMAP non-compact myelin associated protein 2 2
MIRT692649 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692744 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT693092 SCNM1 sodium channel modifier 1 2 2
MIRT693296 SYTL3 synaptotagmin like 3 2 2
MIRT693392 ZNF460 zinc finger protein 460 2 2
MIRT693530 ZNF708 zinc finger protein 708 2 2
MIRT693562 PIGR polymeric immunoglobulin receptor 2 2
MIRT694492 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694722 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694866 ZNF417 zinc finger protein 417 2 2
MIRT695070 ZNF17 zinc finger protein 17 2 2
MIRT695451 COX18 COX18, cytochrome c oxidase assembly factor 2 2
MIRT695724 ZNF117 zinc finger protein 117 2 2
MIRT695898 MED16 mediator complex subunit 16 2 2
MIRT696244 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT696259 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT696512 C3 complement C3 2 2
MIRT696560 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696643 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696791 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT696819 PLLP plasmolipin 2 2
MIRT697088 GPKOW G-patch domain and KOW motifs 2 2
MIRT697153 INMT indolethylamine N-methyltransferase 2 2
MIRT697202 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697322 ZNF641 zinc finger protein 641 2 2
MIRT697578 YME1L1 YME1 like 1 ATPase 2 2
MIRT697619 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT698619 TES testin LIM domain protein 2 2
MIRT698804 STK38 serine/threonine kinase 38 2 2
MIRT698949 SPAST spastin 2 2
MIRT699083 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT699430 SLC1A5 solute carrier family 1 member 5 2 2
MIRT699550 SIT1 signaling threshold regulating transmembrane adaptor 1 2 2
MIRT700324 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700360 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT700462 PURB purine rich element binding protein B 2 2
MIRT701677 MYADM myeloid associated differentiation marker 2 2
MIRT701757 MSL2 MSL complex subunit 2 2 2
MIRT701977 MIER3 MIER family member 3 2 2
MIRT703178 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT703203 GOLGA3 golgin A3 2 2
MIRT703359 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT703425 FYTTD1 forty-two-three domain containing 1 2 2
MIRT703484 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT703590 FBXO45 F-box protein 45 2 2
MIRT703806 EVI5 ecotropic viral integration site 5 2 2
MIRT703915 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT704234 DHDDS dehydrodolichyl diphosphate synthase subunit 2 2
MIRT704646 CLCC1 chloride channel CLIC like 1 2 2
MIRT705151 C11orf58 chromosome 11 open reading frame 58 2 2
MIRT705480 ASXL2 additional sex combs like 2, transcriptional regulator 2 2
MIRT705530 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT705661 ANKRD40 ankyrin repeat domain 40 2 2
MIRT706144 ZNF674 zinc finger protein 674 2 2
MIRT706473 SNX27 sorting nexin family member 27 2 2
MIRT708254 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT708838 SCAND3 zinc finger BED-type containing 9 1 1
MIRT710437 BTNL3 butyrophilin like 3 2 2
MIRT711325 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT716151 RBM48 RNA binding motif protein 48 2 2
MIRT717402 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT720866 ADCY5 adenylate cyclase 5 2 2
MIRT722226 ZNF503 zinc finger protein 503 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1273h-5p Paclitaxel 36314 NSC125973 approved sensitive High Ovarian Cancer cell line (SKOV3)
hsa-miR-1273h-5p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-1273h-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)

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