pre-miRNA Information | |
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pre-miRNA | hsa-mir-3175 |
Genomic Coordinates | chr15: 92904399 - 92904475 |
Description | Homo sapiens miR-3175 stem-loop |
Comment | None |
RNA Secondary Structure |
Mature miRNA Information | ||||||||||||||||||||||
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Mature miRNA | hsa-miR-3175 | |||||||||||||||||||||
Sequence | 10| CGGGGAGAGAACGCAGUGACGU |31 | |||||||||||||||||||||
Evidence | Experimental | |||||||||||||||||||||
Experiments | Illumina | |||||||||||||||||||||
SNPs in miRNA |
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Putative Targets |
miRNA Expression profile | |
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miRNAs in Extracellular Vesicles |
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Circulating MicroRNA Expression Profiling |
Gene Information | |||||||||||||||||||||
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Gene Symbol | ZBTB7A | ||||||||||||||||||||
Synonyms | FBI-1, FBI1, LRF, TIP21, ZBTB7, ZNF857A, pokemon | ||||||||||||||||||||
Description | zinc finger and BTB domain containing 7A | ||||||||||||||||||||
Transcript | NM_015898 | ||||||||||||||||||||
Expression | |||||||||||||||||||||
Putative miRNA Targets on ZBTB7A | |||||||||||||||||||||
3'UTR of ZBTB7A (miRNA target sites are highlighted) |
>ZBTB7A|NM_015898|3'UTR 1 AAACCAAAAAGAGAAAACAGAAACCCGAGAAAGAGAGAGACAGAGAGAGAGAAAAAAAATCACCCACCACCCCCCCAAAA 81 ACACAAAAAAAGAAAATCTATCTATATACAGATATCTATATCTATATATATATATACAGATATATATATATGACGCGTCA 161 CAGAATCTAGGGTAGCGCTTTCTCAGATTTCCCTCCTTTCTGACGTTTTTCTCCCTCCGCAGGGGCCCCGGCCCTCCCTG 241 GCTCCCCTTCCCCCCACCACCCCATCGCTGGGTTTCGGGGCTTGGTTTGGGGTTTTTTGTAGGACACAAGGAATCCGAGA 321 CCCCGCACAGCCCCCTGGGCACCCGGCATGGGGCCTGGGGCCCGATCCGAGGCCCTGGGCTGGGGGGAGGGTAGACGTGG 401 GGGCGCTGGGGGGGGACTGGGGTGGGCTTTTAATTTCCTCCCCTCGCTGGTTTCTATGAGTCTTTCAGACAAGACCTTAA 481 ATGATTTCTGTCTGCTCTGAGCGGACGTTAAAATGGGCCCCCGTCCCCCGACCCGCACCCTCCTTCCTCAGGGCACTTAC 561 TAAGGGAGGGGTCTCCCTCTCCATCTCCCCAGTGGCCTCCCCGCCTCCAACCCTGCCTGCGGCCTCCCCCCGTCGCCCAC 641 CCCACGTCTCCTGGCCACTGAGACACAAACCTATTTATTTCTAGGCCTGGAGAAAGGAGATCGGACTGGGGTTCCCGGTG 721 GGGCGCCAGGATGGCTCCTGGGGGTGCTCCTGCCGCCTTCCTTCACGGCACTTACAACCGGCGGGACCCCCAGGGACCAC 801 CCCTCAGGGCGCCCCCCCACCCCCGCCCGGTCCACCTAGACCCCCACGTTTGGAGATTCAAAACTTCTGTCTTCGTCCTC 881 TCCCCCGAGCCCCCTCTCCCAAATTTTTAAAGCACTTTTTAGATTTTTTTTTCTCTTTCCTCCTTAAAAACAAAATTTAT 961 ATATAGATATATATATATATATAAATAATATACTTTTCCTCAGAGGAGCAGGCAACAGTGTGGGATAAACAGAGTCACGA 1041 TCAGAGGAACCCCAGGGTCTGGTGATGGCAGGGATGGGGGGAGAGAGAGAAAATCCACAAATTCCAATGTCACAAAAGCA 1121 ATAAAACAAACTAGAAAAAAAAAAGGTTTTACAAAATGAAAGGAAGGAAAAAAAAAAAGGCAACCAACCACATTAGAAGT 1201 CTTGGCACTTTGTAACGGAACGGGTACTACACTTTATCTTAATTCTTAATTTAAAAACATGTTTACAAGTTACAACCAAC 1281 TTCTATGAAAAGTTGAAAAGACAAAAAAAAAAAAAAAAAGCGAGCGAGAGAGAGAGCGAGAGAGAGAGCGAGAGCAGAAG 1361 AAATTCCTAAAAGTCGATTTATTTTTGTACAAAATAATAAAAAAAAAAACCCACCACAAACGTAGAATCCACTTCTGTTC 1441 CCCAAAAAGCGAGAAGGGGGGTTCAGGAGGAAGCCATCGCAGGGGACCTGGGAGACGCCCCGAGGTGTTTGTGCTTCACC 1521 CCCAGACGTCAGCCTCGAAGGCAGGACTGTGGGGTGTTCGTGCTGTGTTCCCCCCGCTCCCCCTTTCTGTCCCCTTTTTT 1601 GGTTCTGACGTGAAGAGGTCTTAGCGCCCGCTTCTGTCCACGGGGTCTCTCCTTCCTCCTCCCTAGCTCAGGGATGGGCC 1681 TTCCAGCCGGAGCACCCCGATCCCCATCCGGCACCCCCCAATCCCCCAACACGCCTGTCCCTCCCGCATGGCCACCAAGG 1761 AGCTGGACCTTGGATGCGCCTACCCTGCTGAGGTGGGTGACAGGGGCCCCCCACCTCCAGGGCCTTAGAACCACCGCCCC 1841 TCTCCCCACCCCAGGCACCCCTCTTTTTACTCAAAGGCACTGACTGTAATCCAGGGGGACTGGGACCTGCCTCCCCCCAA 1921 CCTCTGGCTCCCACAAGGCCCGGTGTTGACCGAGCCACAGGCCACGGACAGGGGCCGGGGTTGGGGAGACTATGTCGCCA 2001 GATGCCAGGACGCCCTCACCCCGTTTGCATATGCAATGCTAGCATGGGACCCCGAAAATAGACGCTCTGCTGCACTGAGA 2081 CTTCTTGTCAATGCCCAACCGGCGGGGGGGTGTCTCCCTGCCCCCGACCCCCCCATACCCCCTTCTCTGTGACACACACA 2161 TCTTCTCGTCTCTTTTTCTTTCATTGTTAAAGGGAAGCTTTTTAAGAAGGCAATTTTCATATTGTTTCTACAGGATGGTT 2241 TTGGTTCCCTTCCCTTCCCACCCCCCCTTAAGCCTGTCAGCCCCCTCCAAATGTCTCAGGATCCCCCCTCTCCCCTGGGG 2321 CTGGGTGACAGCACCCCGGCTGCGTTCACACCCCAGTGTCACAGGGCGAGCTGTTCTGGAGAGAAAACCATCTGTCGTGG 2401 CTGAGCGGGGAGCTTGAACACCCAGGCCAGGGACACCCCTCCCCAGCTCCCAGAGAGGCCCCCTGAGGGGTGAGCCCTCT 2481 TTCCACCTTCCCCTATCCATGCACCCCCTCGCAATAAAACCAACTCTAAAATCACAGCTGTCGTCCTAGCCAGTGGGGGC 2561 GACCGGACTTGGGGGGTGGAGCCCTCTGGGACTTCCGTAGGAACAAGGGCTGCGGCCCACCGCGACACTTACACAGACCT 2641 CGGGGATTGCACTAAACCCTCGTTCCTAGCTCCGCACTCAGCTTCGCCTGTCCTGCCCGCCCACTTTGCCTTAACTACCC 2721 GCCCGTCCTGGGGGCCACAGCCTCTGCATGGGCCCAGAGCCGGGACCCCCCCAGCCCAGCCCCGCCCTCCCCAGACTCCG 2801 CGCAATCACATACTGTATATAGACGTGAATCGATTTTATTTTTATTCTTTAAATTAAGGTCGTGATAAAGTGTTGCCAAA 2881 GATACCTGCTGAATTCTCGCGTTTCAGGAAACAAACAAACAAAAAAAAATGATATTTGAGGAGGGTCGTGTTGACTCCAT 2961 ATGAAAGGACACAGCTCAAAGCTTTTTTGTTTGGTTGTTTGGGGTTTTTTGTGTTTTCTTTTTTTGGGGTGTTTTTTTTT 3041 TAACTGCCTGGTACAAAAAAAAAAAGAGAAAAAAAAAAAAGAAAAACAATGCGAAATTGTTATTTCCATTCTCATGGTGA 3121 AGTTGCGTGGACGCGTGTGTGCGTGTGTGCAAGAGAGCGGGAGTGAGGTCCAGGCTGGGGTTGGGGGGCTTCAGGCGGGG 3201 GCGCCCGGGGGCCGGGGAGGTGGCCGGGCCGGAGCCCCCGTCTGCAGTGCCCCCCAGCCTGCCGGGCCCAGGAGAGAGAG 3281 AGAAGCATCTTTGCTACTAGCTGTTGCTGCTACCTGCCTCTGCCCCCCGACGCCCCCCGCCTTTTGAGATTAAGGAAAAA 3361 AAAAAAAAGTCAAAAAAGTTTTTAAAAATGAAAAAAAAAAATTATAAACCAGTGAATGTAAAATGCCGGAGCAGGCCCGG 3441 CCTGGCATGGGTGTGGACCTGCAGCCAGGCAGGCTCGAGCGGGCGATACCAAAGTCTGCCCCCCCACCATTGTGGCCATG 3521 CAGTCCTGTCACTGTCTTTTTGCTTCCTTCCGAGGGGGGTCCCCCAGCCTCTTCCAGGGTCTTCCCCTGGAAGTGGGCGG 3601 CTGCAGGGAAGGTGGGGGACAGGGGTCTTTGCACGATTCAGACCCCGGGGCCGTGGCAGGAGCGGTCACCTCACAGGTGG 3681 TGACACTGAGGCAGGGGCCTCGGGGTGCCCCCTCCCGCCCGGCAACCAGAATGGTTGGAGGCAAGACAGAGAGAATGAAA 3761 GGAAAAACAGAAGAAAAAAAAATATTAAAAACCAACAAAAAAAGCAAAAATCCTATTTTTTGAGAAAGAAAGATATTTAT 3841 ATTTGCAGTTTTATTTTAAAAAGTTATTTAAGTTGAAGCAGCCTTCCTGGAGGTGGGGGGGGGGGGGTGGTGGGTGGCTG 3921 GCGCAGGACGGGTCAGGGGCCTGGAGGCTGGGGGTGCCCCAGGAGCTACAACCTCAGAGTTAAGACTAGCTCGCATTAAA 4001 TACATAGATTTACGGGGGGGGGGGGGGGGGGCCGGGCCCAGGGGGTGGAGGGGGCCAGGGAGACCCCCATCCCTCGCCGG 4081 GGCTGCCTGGAGGCTGTGGACCAGGATCCGATGCCCAGGTCCCGCCCCCCACCCCACCCCAGGCCCAGAATCGAGGTGCC 4161 TTGGACTTTGGAGGGGCCAGGCCTGGTGAATGGGGGGCGGGGCGGCGCCCTCAGGGTACAGAGCACAGACAGATAGACAT 4241 TCCAGAGACTGTATTGAGAGTCTTTATAAAGTGTGGGAGATTTAAAAAAAAAAAAAACTGATAAAAATGCACTTTTTGGG 4321 AGTGGGGAGGGAGAAGCTTTAAAAGTAATAAAAAACAAACAAAAACACAAAAGATGAAAAAACAAAAAAATTCATTTTTC 4401 TTGTACATAAAAAAAAAAAAAGAACCACTAAACGCAGCCTGTTACGAC Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
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miRNA-target interactions (Predicted by miRanda) |
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DRVs in gene 3'UTRs | |||||||||||||||||||||
SNPs in gene 3'UTRs |
Experimental Support 1 for Functional miRNA-Target Interaction | |||||||
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miRNA:Target | ---- | ||||||
Validation Method |
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Conditions | Hela | ||||||
Location of target site | 3'UTR | ||||||
Tools used in this research | TargetScan , miRTarCLIP , Piranha | ||||||
Original Description (Extracted from the article) |
...
HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control
... - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell. |
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miRNA-target interactions (Provided by authors) |
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Article |
- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al. - Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
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Experimental Support 2 for Functional miRNA-Target Interaction | |
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miRNA:Target | ---- |
Validation Method |
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Conditions | C8166 , TZM-bl |
Location of target site | 3'UTR |
Tools used in this research | TargetScan , miRTarCLIP , Piranha |
Original Description (Extracted from the article) |
...
PAR-CLIP data was present in GSM1462572. RNA binding protein: AGO2. Condition:C8166 NL4-3
PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL
... - Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio. |
Article |
- Whisnant AW; Bogerd HP; Flores O; Ho P; et al. - mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
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CLIP-seq Support 1 for dataset GSM4903825 | |
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Method / RBP | HITS-CLIP / AGO |
Cell line / Condition | Dermal fibroblasts / PID14_NS |
Location of target site | NM_015898 | 3UTR | AGGAUCCCCCCUCUCCCCUGGGGCUGG |
Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
Accession Series | GSE161237 |
CLIP-seq Viewer | Link |
CLIP-seq Support 2 for dataset GSM4903831 | |
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Method / RBP | HITS-CLIP / AGO |
Cell line / Condition | Human neurons / 124TD_shELAVL3_a |
Location of target site | NM_015898 | 3UTR | GUCUCCCUCUCCAUC |
Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
Accession Series | GSE161238 |
CLIP-seq Viewer | Link |
CLIP-seq Support 3 for dataset GSM1048187 | |
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Method / RBP | HITS-CLIP / AGO2 |
Cell line / Condition | Hela / Hela_AGO2_CLIP_control |
Location of target site | ENST00000322357.4 | 3UTR | AGACUCCGCGCAAUCACAUACUGUAUAUAGACGUGAAUCGA |
Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
Article / Accession Series | PMID: 23313552 / GSE42701 |
CLIP-seq Viewer | Link |
CLIP-seq Support 4 for dataset GSM1462572 | |
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Method / RBP | PAR-CLIP / AGO2 |
Cell line / Condition | C8166 / C8166 NL4-3 |
Location of target site | ENST00000322357.4 | 3UTR | UCAGGAUCCCCCCUCUCCC |
Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
Article / Accession Series | PMID: 23592263 / GSE59944 |
CLIP-seq Viewer | Link |
CLIP-seq Support 5 for dataset GSM1462574 | |
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Method / RBP | PAR-CLIP / AGO2 |
Cell line / Condition | TZM-bl / TZM-bl ami BaL |
Location of target site | ENST00000322357.4 | 3UTR | CCCCCUCCAAAUGUCUCAGGAUCCCCCCUCUCCCCUGGGGCUG |
Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
Article / Accession Series | PMID: 23592263 / GSE59944 |
CLIP-seq Viewer | Link |
MiRNA-Target Expression Profile | |||||||
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MiRNA-Target Expression Profile (TCGA) | |||||||||||||||||||||
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208 hsa-miR-3175 Target Genes:
Functional analysis:
ID | Target | Description | Validation methods | |||||||||
Strong evidence | Less strong evidence | |||||||||||
MIRT118211 | KHSRP | KH-type splicing regulatory protein | 2 | 2 | ||||||||
MIRT131222 | ATG2A | autophagy related 2A | 2 | 2 | ||||||||
MIRT143733 | CCL22 | C-C motif chemokine ligand 22 | 2 | 2 | ||||||||
MIRT151435 | ZBTB7A | zinc finger and BTB domain containing 7A | 2 | 4 | ||||||||
MIRT191759 | ZNF410 | zinc finger protein 410 | 2 | 2 | ||||||||
MIRT267302 | TMEM109 | transmembrane protein 109 | 2 | 2 | ||||||||
MIRT273435 | DAZAP2 | DAZ associated protein 2 | 2 | 4 | ||||||||
MIRT286061 | HIC1 | HIC ZBTB transcriptional repressor 1 | 2 | 2 | ||||||||
MIRT288597 | DCAF7 | DDB1 and CUL4 associated factor 7 | 2 | 2 | ||||||||
MIRT316768 | FOXC1 | forkhead box C1 | 2 | 4 | ||||||||
MIRT331065 | EIF5AL1 | eukaryotic translation initiation factor 5A-like 1 | 2 | 4 | ||||||||
MIRT398528 | ARIH1 | ariadne RBR E3 ubiquitin protein ligase 1 | 2 | 2 | ||||||||
MIRT443842 | RGS6 | regulator of G protein signaling 6 | 2 | 2 | ||||||||
MIRT446200 | GTPBP4 | GTP binding protein 4 | 2 | 2 | ||||||||
MIRT448039 | SFRP1 | secreted frizzled related protein 1 | 2 | 2 | ||||||||
MIRT451946 | TMPRSS5 | transmembrane protease, serine 5 | 2 | 2 | ||||||||
MIRT453239 | FTSJ3 | FtsJ RNA methyltransferase homolog 3 | 2 | 2 | ||||||||
MIRT453501 | ARRB1 | arrestin beta 1 | 2 | 2 | ||||||||
MIRT453541 | PRR12 | proline rich 12 | 2 | 2 | ||||||||
MIRT453953 | ENTHD1 | ENTH domain containing 1 | 2 | 2 | ||||||||
MIRT454209 | HLA-A | major histocompatibility complex, class I, A | 2 | 2 | ||||||||
MIRT455501 | C6orf106 | chromosome 6 open reading frame 106 | 2 | 2 | ||||||||
MIRT455620 | PABPC1L2B | poly(A) binding protein cytoplasmic 1 like 2B | 2 | 10 | ||||||||
MIRT455631 | PABPC1L2A | poly(A) binding protein cytoplasmic 1 like 2A | 2 | 10 | ||||||||
MIRT456074 | AFF2 | AF4/FMR2 family member 2 | 2 | 6 | ||||||||
MIRT456149 | TTF2 | transcription termination factor 2 | 2 | 2 | ||||||||
MIRT456309 | ARHGEF2 | Rho/Rac guanine nucleotide exchange factor 2 | 2 | 2 | ||||||||
MIRT456444 | TMEM81 | transmembrane protein 81 | 2 | 2 | ||||||||
MIRT456685 | LDB1 | LIM domain binding 1 | 2 | 2 | ||||||||
MIRT457516 | ZMAT5 | zinc finger matrin-type 5 | 2 | 2 | ||||||||
MIRT457599 | IDS | iduronate 2-sulfatase | 2 | 2 | ||||||||
MIRT457949 | ABCC5 | ATP binding cassette subfamily C member 5 | 2 | 6 | ||||||||
MIRT458593 | KCTD2 | potassium channel tetramerization domain containing 2 | 2 | 2 | ||||||||
MIRT459505 | TACR3 | tachykinin receptor 3 | 2 | 2 | ||||||||
MIRT459687 | VPS37C | VPS37C, ESCRT-I subunit | 2 | 2 | ||||||||
MIRT459914 | HHIP | hedgehog interacting protein | 2 | 11 | ||||||||
MIRT460610 | FEM1A | fem-1 homolog A | 2 | 2 | ||||||||
MIRT460646 | IGFBP4 | insulin like growth factor binding protein 4 | 2 | 2 | ||||||||
MIRT461454 | SLC19A3 | solute carrier family 19 member 3 | 2 | 2 | ||||||||
MIRT461909 | NECAB3 | N-terminal EF-hand calcium binding protein 3 | 2 | 2 | ||||||||
MIRT462059 | CCDC77 | coiled-coil domain containing 77 | 2 | 4 | ||||||||
MIRT462404 | RBM28 | RNA binding motif protein 28 | 2 | 2 | ||||||||
MIRT462589 | MYL12A | myosin light chain 12A | 2 | 2 | ||||||||
MIRT462770 | ZNF8 | zinc finger protein 8 | 2 | 2 | ||||||||
MIRT462991 | ZNF740 | zinc finger protein 740 | 2 | 2 | ||||||||
MIRT463680 | YWHAZ | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta | 2 | 2 | ||||||||
MIRT464112 | VPS35 | VPS35, retromer complex component | 2 | 2 | ||||||||
MIRT464414 | UNC13A | unc-13 homolog A | 2 | 6 | ||||||||
MIRT464608 | UBE4B | ubiquitination factor E4B | 2 | 2 | ||||||||
MIRT465679 | TNPO2 | transportin 2 | 2 | 2 | ||||||||
MIRT467225 | SPRED1 | sprouty related EVH1 domain containing 1 | 2 | 2 | ||||||||
MIRT469316 | RGP1 | RGP1 homolog, RAB6A GEF complex partner 1 | 2 | 2 | ||||||||
MIRT469604 | RALGAPA2 | Ral GTPase activating protein catalytic alpha subunit 2 | 2 | 2 | ||||||||
MIRT469655 | RAC1 | Rac family small GTPase 1 | 2 | 2 | ||||||||
MIRT469744 | RAB2B | RAB2B, member RAS oncogene family | 2 | 2 | ||||||||
MIRT469947 | PTPRF | protein tyrosine phosphatase, receptor type F | 2 | 2 | ||||||||
MIRT470140 | PSME3 | proteasome activator subunit 3 | 2 | 2 | ||||||||
MIRT473142 | MLLT1 | MLLT1, super elongation complex subunit | 2 | 2 | ||||||||
MIRT473287 | MFRP | membrane frizzled-related protein | 2 | 2 | ||||||||
MIRT473379 | MBD4 | methyl-CpG binding domain 4, DNA glycosylase | 2 | 6 | ||||||||
MIRT473661 | MARCKSL1 | MARCKS like 1 | 2 | 2 | ||||||||
MIRT475256 | IGF1R | insulin like growth factor 1 receptor | 2 | 2 | ||||||||
MIRT475361 | ICOSLG | inducible T-cell costimulator ligand | 2 | 4 | ||||||||
MIRT475662 | HIC2 | HIC ZBTB transcriptional repressor 2 | 2 | 2 | ||||||||
MIRT476524 | GABPB1 | GA binding protein transcription factor beta subunit 1 | 2 | 2 | ||||||||
MIRT476572 | G3BP1 | G3BP stress granule assembly factor 1 | 2 | 4 | ||||||||
MIRT477624 | EFNA1 | ephrin A1 | 2 | 2 | ||||||||
MIRT478125 | DIRAS1 | DIRAS family GTPase 1 | 2 | 2 | ||||||||
MIRT479971 | CARD10 | caspase recruitment domain family member 10 | 2 | 2 | ||||||||
MIRT480144 | CALR | calreticulin | 2 | 2 | ||||||||
MIRT480349 | C5orf24 | chromosome 5 open reading frame 24 | 2 | 2 | ||||||||
MIRT480402 | C19orf47 | chromosome 19 open reading frame 47 | 2 | 2 | ||||||||
MIRT480741 | BNC2 | basonuclin 2 | 2 | 8 | ||||||||
MIRT481987 | AMOTL2 | angiomotin like 2 | 2 | 2 | ||||||||
MIRT482650 | FAM195B | MAPK regulated corepressor interacting protein 1 | 2 | 4 | ||||||||
MIRT482809 | TRAF6 | TNF receptor associated factor 6 | 2 | 2 | ||||||||
MIRT482945 | ZNF561 | zinc finger protein 561 | 2 | 6 | ||||||||
MIRT482987 | CSTF2 | cleavage stimulation factor subunit 2 | 2 | 2 | ||||||||
MIRT483123 | ONECUT3 | one cut homeobox 3 | 2 | 4 | ||||||||
MIRT483253 | CITED4 | Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 | 2 | 4 | ||||||||
MIRT483580 | SLC26A9 | solute carrier family 26 member 9 | 2 | 2 | ||||||||
MIRT483704 | ASPH | aspartate beta-hydroxylase | 2 | 2 | ||||||||
MIRT483932 | LENG8 | leukocyte receptor cluster member 8 | 2 | 4 | ||||||||
MIRT484140 | LRRC45 | leucine rich repeat containing 45 | 2 | 4 | ||||||||
MIRT484195 | SUMO1 | small ubiquitin-like modifier 1 | 2 | 4 | ||||||||
MIRT484353 | GATA6 | GATA binding protein 6 | 2 | 12 | ||||||||
MIRT484472 | DDX6 | DEAD-box helicase 6 | 2 | 2 | ||||||||
MIRT484544 | BARHL1 | BarH like homeobox 1 | 2 | 6 | ||||||||
MIRT484572 | HACE1 | HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 | 2 | 2 | ||||||||
MIRT485265 | PLEKHA3 | pleckstrin homology domain containing A3 | 2 | 2 | ||||||||
MIRT485376 | MSN | moesin | 2 | 4 | ||||||||
MIRT485763 | B4GALT5 | beta-1,4-galactosyltransferase 5 | 2 | 2 | ||||||||
MIRT485882 | AGO2 | argonaute 2, RISC catalytic component | 2 | 17 | ||||||||
MIRT486242 | FASTK | Fas activated serine/threonine kinase | 2 | 2 | ||||||||
MIRT486431 | NDUFA5 | NADH:ubiquinone oxidoreductase subunit A5 | 2 | 2 | ||||||||
MIRT486569 | ZNF619 | zinc finger protein 619 | 2 | 2 | ||||||||
MIRT486608 | METTL6 | methyltransferase like 6 | 2 | 2 | ||||||||
MIRT487442 | TFAP2B | transcription factor AP-2 beta | 2 | 4 | ||||||||
MIRT487577 | FAM83H | family with sequence similarity 83 member H | 2 | 4 | ||||||||
MIRT487812 | PER3 | period circadian clock 3 | 2 | 2 | ||||||||
MIRT487944 | ISCA1 | iron-sulfur cluster assembly 1 | 2 | 2 | ||||||||
MIRT487952 | IQSEC2 | IQ motif and Sec7 domain 2 | 2 | 2 | ||||||||
MIRT488011 | GDF5OS | growth differentiation factor 5 opposite strand | 2 | 2 | ||||||||
MIRT488311 | LDOC1 | LDOC1, regulator of NFKB signaling | 2 | 2 | ||||||||
MIRT488639 | HAND2 | heart and neural crest derivatives expressed 2 | 2 | 2 | ||||||||
MIRT488651 | ELAVL3 | ELAV like RNA binding protein 3 | 2 | 2 | ||||||||
MIRT488683 | NAT9 | N-acetyltransferase 9 (putative) | 2 | 2 | ||||||||
MIRT488846 | UBTF | upstream binding transcription factor, RNA polymerase I | 2 | 2 | ||||||||
MIRT488970 | REXO2 | RNA exonuclease 2 | 2 | 2 | ||||||||
MIRT489002 | FBXO40 | F-box protein 40 | 2 | 2 | ||||||||
MIRT489038 | PRPF4B | pre-mRNA processing factor 4B | 2 | 2 | ||||||||
MIRT489167 | ANKRD45 | ankyrin repeat domain 45 | 2 | 2 | ||||||||
MIRT489221 | ASCL2 | achaete-scute family bHLH transcription factor 2 | 2 | 4 | ||||||||
MIRT489356 | SYNGR1 | synaptogyrin 1 | 2 | 4 | ||||||||
MIRT489373 | RAB11B | RAB11B, member RAS oncogene family | 2 | 6 | ||||||||
MIRT489526 | MRE11A | MRE11 homolog, double strand break repair nuclease | 2 | 14 | ||||||||
MIRT490071 | PRRT2 | proline rich transmembrane protein 2 | 2 | 2 | ||||||||
MIRT490275 | ZNF562 | zinc finger protein 562 | 2 | 4 | ||||||||
MIRT490696 | FSTL4 | follistatin like 4 | 2 | 2 | ||||||||
MIRT490778 | PSMD3 | proteasome 26S subunit, non-ATPase 3 | 2 | 2 | ||||||||
MIRT490854 | UPK2 | uroplakin 2 | 2 | 2 | ||||||||
MIRT491048 | CHST12 | carbohydrate sulfotransferase 12 | 2 | 2 | ||||||||
MIRT491123 | PTPRE | protein tyrosine phosphatase, receptor type E | 2 | 2 | ||||||||
MIRT491161 | LRP3 | LDL receptor related protein 3 | 2 | 2 | ||||||||
MIRT491506 | CREBL2 | cAMP responsive element binding protein like 2 | 2 | 2 | ||||||||
MIRT491532 | HDAC5 | histone deacetylase 5 | 2 | 2 | ||||||||
MIRT491699 | PDZD4 | PDZ domain containing 4 | 2 | 2 | ||||||||
MIRT491949 | VPS52 | VPS52, GARP complex subunit | 2 | 2 | ||||||||
MIRT492226 | SLC48A1 | solute carrier family 48 member 1 | 2 | 2 | ||||||||
MIRT492278 | SHISA6 | shisa family member 6 | 2 | 4 | ||||||||
MIRT492472 | RASD1 | ras related dexamethasone induced 1 | 2 | 4 | ||||||||
MIRT492480 | RAPGEF1 | Rap guanine nucleotide exchange factor 1 | 2 | 2 | ||||||||
MIRT492498 | RANBP10 | RAN binding protein 10 | 2 | 4 | ||||||||
MIRT492565 | PPM1L | protein phosphatase, Mg2+/Mn2+ dependent 1L | 2 | 2 | ||||||||
MIRT492702 | PHYHIP | phytanoyl-CoA 2-hydroxylase interacting protein | 2 | 2 | ||||||||
MIRT492916 | NFAT5 | nuclear factor of activated T-cells 5 | 2 | 2 | ||||||||
MIRT493020 | NACC1 | nucleus accumbens associated 1 | 2 | 2 | ||||||||
MIRT493218 | MEX3A | mex-3 RNA binding family member A | 2 | 2 | ||||||||
MIRT493313 | LIMD2 | LIM domain containing 2 | 2 | 2 | ||||||||
MIRT493410 | KDM6B | lysine demethylase 6B | 2 | 2 | ||||||||
MIRT493451 | ITFG3 | family with sequence similarity 234 member A | 2 | 2 | ||||||||
MIRT494028 | DUSP7 | dual specificity phosphatase 7 | 2 | 4 | ||||||||
MIRT494329 | CASKIN1 | CASK interacting protein 1 | 2 | 2 | ||||||||
MIRT496564 | ZBTB37 | zinc finger and BTB domain containing 37 | 2 | 2 | ||||||||
MIRT496771 | ADAMTS14 | ADAM metallopeptidase with thrombospondin type 1 motif 14 | 2 | 2 | ||||||||
MIRT496973 | RPS6KA2 | ribosomal protein S6 kinase A2 | 2 | 2 | ||||||||
MIRT497038 | DYRK1B | dual specificity tyrosine phosphorylation regulated kinase 1B | 2 | 2 | ||||||||
MIRT498913 | SRCAP | Snf2 related CREBBP activator protein | 2 | 2 | ||||||||
MIRT499006 | CCDC50 | coiled-coil domain containing 50 | 2 | 2 | ||||||||
MIRT499637 | CREB3L2 | cAMP responsive element binding protein 3 like 2 | 2 | 2 | ||||||||
MIRT501700 | PCGF3 | polycomb group ring finger 3 | 2 | 6 | ||||||||
MIRT502230 | HOXC6 | homeobox C6 | 2 | 2 | ||||||||
MIRT502655 | CTC1 | CST telomere replication complex component 1 | 2 | 13 | ||||||||
MIRT506246 | PER1 | period circadian clock 1 | 2 | 8 | ||||||||
MIRT506430 | NAGK | N-acetylglucosamine kinase | 2 | 6 | ||||||||
MIRT507336 | FAM168A | family with sequence similarity 168 member A | 2 | 2 | ||||||||
MIRT507781 | CDKN1B | cyclin dependent kinase inhibitor 1B | 2 | 2 | ||||||||
MIRT510062 | C12orf49 | chromosome 12 open reading frame 49 | 2 | 4 | ||||||||
MIRT511935 | FAM127B | retrotransposon Gag like 8A | 2 | 2 | ||||||||
MIRT513037 | BRIX1 | BRX1, biogenesis of ribosomes | 2 | 2 | ||||||||
MIRT513518 | YIPF4 | Yip1 domain family member 4 | 2 | 6 | ||||||||
MIRT522612 | MAP7D1 | MAP7 domain containing 1 | 2 | 4 | ||||||||
MIRT527162 | ADRA2B | adrenoceptor alpha 2B | 2 | 2 | ||||||||
MIRT535350 | PFN1 | profilin 1 | 2 | 2 | ||||||||
MIRT536734 | IER5 | immediate early response 5 | 2 | 4 | ||||||||
MIRT538505 | CLIP1 | CAP-Gly domain containing linker protein 1 | 2 | 2 | ||||||||
MIRT544643 | PHF8 | PHD finger protein 8 | 2 | 4 | ||||||||
MIRT544856 | MYH2 | myosin heavy chain 2 | 2 | 4 | ||||||||
MIRT568898 | ATP6V1B1 | ATPase H+ transporting V1 subunit B1 | 2 | 2 | ||||||||
MIRT568949 | RUNX3 | runt related transcription factor 3 | 2 | 2 | ||||||||
MIRT568971 | CACNA1C | calcium voltage-gated channel subunit alpha1 C | 2 | 2 | ||||||||
MIRT569037 | IL21R | interleukin 21 receptor | 2 | 2 | ||||||||
MIRT569310 | CC2D1B | coiled-coil and C2 domain containing 1B | 2 | 2 | ||||||||
MIRT569721 | GPR173 | G protein-coupled receptor 173 | 2 | 2 | ||||||||
MIRT569765 | SAMD14 | sterile alpha motif domain containing 14 | 2 | 2 | ||||||||
MIRT569857 | KRT80 | keratin 80 | 2 | 2 | ||||||||
MIRT569867 | KLK10 | kallikrein related peptidase 10 | 2 | 2 | ||||||||
MIRT569914 | PCSK9 | proprotein convertase subtilisin/kexin type 9 | 2 | 2 | ||||||||
MIRT570060 | CPNE2 | copine 2 | 2 | 2 | ||||||||
MIRT570307 | GOSR1 | golgi SNAP receptor complex member 1 | 2 | 2 | ||||||||
MIRT570982 | RGS19 | regulator of G protein signaling 19 | 2 | 2 | ||||||||
MIRT571025 | CLSTN1 | calsyntenin 1 | 2 | 2 | ||||||||
MIRT573215 | NAT10 | N-acetyltransferase 10 | 2 | 2 | ||||||||
MIRT574633 | LPCAT3 | lysophosphatidylcholine acyltransferase 3 | 2 | 2 | ||||||||
MIRT574690 | HNRNPA3 | heterogeneous nuclear ribonucleoprotein A3 | 2 | 2 | ||||||||
MIRT575732 | Hhip | Hedgehog-interacting protein | 2 | 7 | ||||||||
MIRT575837 | Ago2 | argonaute RISC catalytic subunit 2 | 2 | 10 | ||||||||
MIRT631303 | CBS | cystathionine-beta-synthase | 2 | 2 | ||||||||
MIRT647750 | SAMD9L | sterile alpha motif domain containing 9 like | 2 | 2 | ||||||||
MIRT648323 | PLIN1 | perilipin 1 | 2 | 2 | ||||||||
MIRT649339 | HEXA | hexosaminidase subunit alpha | 2 | 2 | ||||||||
MIRT649994 | MSI1 | musashi RNA binding protein 1 | 2 | 2 | ||||||||
MIRT661786 | NLRC3 | NLR family CARD domain containing 3 | 2 | 2 | ||||||||
MIRT665992 | SYNJ2BP | synaptojanin 2 binding protein | 2 | 2 | ||||||||
MIRT667177 | NR2F6 | nuclear receptor subfamily 2 group F member 6 | 2 | 4 | ||||||||
MIRT667386 | MOB1B | MOB kinase activator 1B | 2 | 2 | ||||||||
MIRT680929 | EVC | EvC ciliary complex subunit 1 | 2 | 2 | ||||||||
MIRT691870 | GXYLT2 | glucoside xylosyltransferase 2 | 2 | 2 | ||||||||
MIRT693258 | HBS1L | HBS1 like translational GTPase | 2 | 2 | ||||||||
MIRT693490 | MOB3A | MOB kinase activator 3A | 2 | 2 | ||||||||
MIRT696099 | SETD1A | SET domain containing 1A | 2 | 2 | ||||||||
MIRT697955 | TSPYL1 | TSPY like 1 | 2 | 2 | ||||||||
MIRT699481 | SLC10A6 | solute carrier family 10 member 6 | 2 | 2 | ||||||||
MIRT708274 | ZNF101 | zinc finger protein 101 | 2 | 2 | ||||||||
MIRT712147 | TAOK1 | TAO kinase 1 | 2 | 2 | ||||||||
MIRT717122 | SOWAHA | sosondowah ankyrin repeat domain family member A | 2 | 2 | ||||||||
MIRT717643 | HLX | H2.0 like homeobox | 2 | 2 | ||||||||
MIRT755336 | DCAF1 | DDB1 and CUL4 associated factor 1 | 6 | 1 |
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