miRTarBase - #MIRT156020


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pre-miRNA Information
pre-miRNA hsa-mir-548ah   
Genomic Coordinates chr4: 76575551 - 76575626
Description Homo sapiens miR-548ah stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548ah-5p
Sequence 11| AAAAGUGAUUGCAGUGUUUG |30
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 3 4 + 76575563 29233923 MiREDiBase
A-to-I 4 4 + 76575564 29233923 MiREDiBase
A-to-I 13 4 + 76575573 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1249440036 5 dbSNP
rs1208814230 6 dbSNP
rs1327858995 9 dbSNP
rs1034733368 12 dbSNP
rs1334062111 15 dbSNP
rs1442043011 16 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SIK1   
Synonyms MSK, SIK, SIK-1, SNF1LK
Description salt inducible kinase 1
Transcript NM_173354   
Expression
Putative miRNA Targets on SIK1
3'UTR of SIK1
(miRNA target sites are highlighted)		 
>SIK1|NM_173354|3'UTR
   1 GGGCAGCCCTGCATCCTGGCACGGACACTGACTCTTACAGCAATAACTTCAGAGGAGGTGAAGACATCTGGCCTCAAAGC
  81 CAAGAACTTTCTAGAAGCGAAATAAGCAATACGTTAGGTGTTTTGGCTTTTTAGTTTATTTTTGTTTTATTTTTTTCTTG
 161 CACTGAGTGACCTCAACTTTGAGTAGGGACTGGAAACTTTAGGAAGAAAGATAATTGAGGGGCGTGTCTGGGGGCGGGGG
 241 CAGGAGGGGAGCGGGGTGGAGGGAACACGTGCAGTGCCGTGGTGTGGGGATCTCGGCCCCTCTCTCTGGGTTCGTCGTGG
 321 TTGAGATGATTACCTCGGACGTCTACGGAAACGAGCGGGCGCATTGTTGTCCGCTTGTGTGTGTGTGTGTGTGTGTGTGT
 401 GTGCGCGTGCATTGATTACTATCCATTTCTTTAGTCAACGCTCTCCACTTCCTGATTTCTGCTTTAAGGAAAACTGTGAA
 481 CTTTCTGCTTCATGTATCAGTTTTAAAGCAGCCCAGGCAAAGATCATCTACAGATTCTAGGAATTCTCTCCCCTGAAATC
 561 AAAACCTGGAAGACTTTTTTTTCTTATTTTAGTTGAGAAGTTTCATAAACTGCTCAAGGATTAGTTTTCCAGGACTCTGC
 641 GGAGGAACGGCAGGAAGAACCTCAGAGAGGGCAGAGGTGACTTCAAAGTGCTGGGGACTCCGTCCTGAGGGTCACTTGGC
 721 CCTGAGCCCCTGCGTGCCCTTGCGGAAGCCCAGAAGCTTCTTCCTGCTGCACCTCCCGTTTCCGCTGCTGCTGACGTTTA
 801 TGCATTTCATGATGGGGTCCAACAAGAACACCTGACTTGGGTGAAGTTGTGCAATATTGGAGGCTGACTGTAGGGCTGGG
 881 CAGCTGGGAGACAGGCTCATGGCTCATGGCTCATGGCTCAGGGCGGTGCCTGCCCTGGGCCGGGACCCCCCTCCCCACCC
 961 CCCACCTAGGCTTTTTGGGTTTTGTTCAAGGAAGGTAAAGTGAGAGGTTTAGGTCAGTGTTTTTAAGTTTTTGTTTTTTT
1041 TTTAAAGCAAATCCTGTATATGTATCTACATGGGAGACAGGTAGACACTACTTATTTGTTACATTTTGTACTATACGTTT
1121 GTGTTCCAGGTTTCAGCTTCCCTCGCTCCTGTTGTTAAGAAGCGTCCCTGTCAGCACAGGTGTGCATTGAGGAAGGGGCC
1201 CCAGGGCCTTCGCTCCCTCAGCACTGGGGTGGAGGCGGCAGGAAGGGGCGGCCCTTACCTGGCAGGTCTGGGCGCACCTT
1281 TAGCAGGTGGACTCCGTGGGGCTCCACCAGCCAGAAGCCTCTGGAAGGCAACGAAGGCAATGCTGCTCCCTGAGTCCAGT
1361 CCCCGCCCCCAAACCCAGCCCAGGTGCCTTCAGCTACTTCGGCTTCTTAAACCCTGCAGTGTTAAACAGAGGCATTGAGA
1441 AAGGGGAAAGGCGGGTATTTTTAAAAGCCAAAGATTGACCCAGTTACTTGAGGGTAGGGAGGCGGGCCCAGTGCAGGAGG
1521 CTGCATCCCTGGCCTGCTGGTGCCCACCGGGGGCTGTGCCTGTGCCGGGCCGCAGGGAAGCTGGCTGCCCCCATTCCTGC
1601 TGCTGCTGCTGCTGCTGCTCTGTGGCTGTTTCAAAGACTGGGCGAAAGGCTGTCCGGAGGGCAGACCAGGTGCCTTGCCG
1681 CAGAGAAAACACCAAAGTCTCCTGTTCGCTCATAAAGAAGTTTTTGGGATGGGAGAGAATCCAGACCATCTTGGGGCAGC
1761 CAGGCCCTTGCCTTCATTTTTACAGAGGTAGCACAACTGATTCCAACACAAAACCCCTTCCCCTTTTTAAAATGATTTCT
1841 GTTCTAATGCCATAGATCAAAGGCCTCAGAAACCATTGTGTGTTTCCTCTTTGAAGCAATGACAAGCACTTTACTTTCAC
1921 GGTGGTTTTTGTTTTTTCTTATTGCTGTGGAACCTCTTTTGGAGGACGTTAAAGGCGTGTTTTACTTGTTTTTTTAAGAG
2001 TGTGTGATGTGTGTTTTGTAGATTTCTTGACAGTGCTGTAATACAGACGGCAATGCAATAGCCTATTTAAAGACACTACG
2081 TGATCTGATTGAGATGTACATAGTTTTTTTTTTTACCATAACTGAATTATTTTATCTCTTATGTTAACATGAGAAATGTA
2161 TGCCAAATGATTAGTTGATGTATGTTTTTTAATTTAATATTTAAATAAAATATTTGGAAGGAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' guUUGUGAC-GUUAGUGAAAa 5'
            |:|| || ||| |||||| 
Target 5' gaAGCAATGACAAGCACTTTa 3'
 1893 - 1913 138.00 -9.80
2 
miRNA  3' guuuGUGACGUUAGUGAAAa 5'
              | :|||  |||:||| 
Target 5' aggcCCTTGCCTTCATTTTt 3'
 1762 - 1781 136.00 -9.90
3 
miRNA  3' guuugUGACGUUAGUGAAAa 5'
               |||| |||:|:||| 
Target 5' ccataACTG-AATTATTTTa 3'
 2116 - 2134 130.00 -8.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN20079961 9 COSMIC
COSN30126572 22 COSMIC
COSN30478408 54 COSMIC
COSN19705107 84 COSMIC
COSN31553933 98 COSMIC
COSN22722265 165 COSMIC
COSN24886627 376 COSMIC
COSN14599108 404 COSMIC
COSN10027203 590 COSMIC
COSN10027202 604 COSMIC
COSN30176674 775 COSMIC
COSN31550185 888 COSMIC
COSN30173936 898 COSMIC
COSN28724988 947 COSMIC
COSN8008081 1023 COSMIC
COSN31518975 1033 COSMIC
COSN16167699 1034 COSMIC
COSN30172045 1058 COSMIC
COSN26450600 1294 COSMIC
COSN31556588 1339 COSMIC
COSN30175858 1452 COSMIC
COSN20093882 1503 COSMIC
COSN15583076 1562 COSMIC
COSN31553379 1581 COSMIC
COSN32050540 1597 COSMIC
COSN1257285 1642 COSMIC
COSN20117038 1814 COSMIC
COSN30173827 1820 COSMIC
COSN18980516 1938 COSMIC
COSN8008080 1993 COSMIC
COSN27795276 2078 COSMIC
COSN31546964 2083 COSMIC
COSN20117037 2103 COSMIC
COSN29096747 2104 COSMIC
COSN28013545 2246 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1008225892 2 dbSNP
rs368351045 7 dbSNP
rs761842658 13 dbSNP
rs1028253747 18 dbSNP
rs751608333 22 dbSNP
rs377292480 23 dbSNP
rs1265315292 26 dbSNP
rs762589687 27 dbSNP
rs775386372 28 dbSNP
rs769283155 34 dbSNP
rs1270786613 38 dbSNP
rs759225123 40 dbSNP
rs1195659280 41 dbSNP
rs372803015 42 dbSNP
rs367610798 43 dbSNP
rs1056559702 45 dbSNP
rs746535234 48 dbSNP
rs774650597 51 dbSNP
rs780421893 55 dbSNP
rs1389305397 57 dbSNP
rs1372064789 71 dbSNP
rs1003579909 79 dbSNP
rs1197306034 80 dbSNP
rs905202261 99 dbSNP
rs770104705 111 dbSNP
rs1045035126 112 dbSNP
rs946638275 113 dbSNP
rs1308114664 132 dbSNP
rs1195615856 144 dbSNP
rs1431041151 147 dbSNP
rs1363661522 152 dbSNP
rs915149017 154 dbSNP
rs1162819713 161 dbSNP
rs1458266670 165 dbSNP
rs1052721346 196 dbSNP
rs935175286 208 dbSNP
rs1461291542 223 dbSNP
rs576046351 224 dbSNP
rs1164017847 235 dbSNP
rs1189958577 236 dbSNP
rs1417566706 241 dbSNP
rs1251287926 242 dbSNP
rs1183018702 245 dbSNP
rs1484056217 250 dbSNP
rs922388067 251 dbSNP
rs11908874 252 dbSNP
rs376594664 253 dbSNP
rs910903715 256 dbSNP
rs935893674 257 dbSNP
rs111527447 268 dbSNP
rs952429256 278 dbSNP
rs1227126415 279 dbSNP
rs112957939 282 dbSNP
rs1288533094 284 dbSNP
rs1411156291 289 dbSNP
rs533678436 298 dbSNP
rs11550695 299 dbSNP
rs1220908315 308 dbSNP
rs962198192 308 dbSNP
rs1387273561 313 dbSNP
rs368847193 314 dbSNP
rs1207038787 316 dbSNP
rs1259872315 317 dbSNP
rs1428190063 323 dbSNP
rs1035152512 331 dbSNP
rs1156611769 332 dbSNP
rs546797864 336 dbSNP
rs534756883 337 dbSNP
rs1183916044 340 dbSNP
rs905249432 341 dbSNP
rs567128788 345 dbSNP
rs1442641222 346 dbSNP
rs1411548071 347 dbSNP
rs1010887785 353 dbSNP
rs548814830 356 dbSNP
rs893753686 360 dbSNP
rs1198856984 361 dbSNP
rs1452696051 363 dbSNP
rs551883455 371 dbSNP
rs1052352523 372 dbSNP
rs1464696227 375 dbSNP
rs1268425137 377 dbSNP
rs34056117 377 dbSNP
rs34819201 378 dbSNP
rs1229840929 380 dbSNP
rs935213451 388 dbSNP
rs1385451047 390 dbSNP
rs530601086 392 dbSNP
rs1273738519 393 dbSNP
rs1244309082 396 dbSNP
rs1314960567 396 dbSNP
rs1318086874 398 dbSNP
rs901013840 400 dbSNP
rs1332787108 401 dbSNP
rs111621413 402 dbSNP
rs1182800676 404 dbSNP
rs1204548079 404 dbSNP
rs1226007342 404 dbSNP
rs1245264555 404 dbSNP
rs1408603188 404 dbSNP
rs1459811731 404 dbSNP
rs1485641737 404 dbSNP
rs535793733 404 dbSNP
rs72146735 404 dbSNP
rs749618972 404 dbSNP
rs759670327 404 dbSNP
rs879219707 404 dbSNP
rs1304878464 405 dbSNP
rs1328561868 406 dbSNP
rs1434148489 406 dbSNP
rs942467841 407 dbSNP
rs1321733198 408 dbSNP
rs563462081 408 dbSNP
rs229343 409 dbSNP
rs984219908 411 dbSNP
rs1233277749 412 dbSNP
rs1459012455 415 dbSNP
rs930993768 417 dbSNP
rs1404092423 429 dbSNP
rs920879696 437 dbSNP
rs35681144 438 dbSNP
rs539803060 439 dbSNP
rs780348863 440 dbSNP
rs962251003 446 dbSNP
rs1191623914 447 dbSNP
rs1035206295 453 dbSNP
rs539427310 458 dbSNP
rs969483442 462 dbSNP
rs755845019 475 dbSNP
rs1023716986 479 dbSNP
rs1444918417 481 dbSNP
rs1296954459 492 dbSNP
rs140232919 528 dbSNP
rs893813086 540 dbSNP
rs1350460509 542 dbSNP
rs1405607919 554 dbSNP
rs745843629 570 dbSNP
rs1459712484 572 dbSNP
rs999415304 575 dbSNP
rs1218872014 583 dbSNP
rs1285303778 583 dbSNP
rs1343834105 583 dbSNP
rs1273379272 584 dbSNP
rs1277423696 586 dbSNP
rs1200570092 592 dbSNP
rs1346470360 594 dbSNP
rs192928640 611 dbSNP
rs369281053 624 dbSNP
rs901066434 630 dbSNP
rs561756171 640 dbSNP
rs1040887045 641 dbSNP
rs537013046 648 dbSNP
rs1365743322 649 dbSNP
rs1299545520 650 dbSNP
rs1048137706 655 dbSNP
rs756966226 665 dbSNP
rs148214939 701 dbSNP
rs1036676119 702 dbSNP
rs754767587 708 dbSNP
rs557390807 720 dbSNP
rs751490304 732 dbSNP
rs928182263 733 dbSNP
rs539285763 734 dbSNP
rs1168839498 737 dbSNP
rs577969940 743 dbSNP
rs376263790 744 dbSNP
rs143053229 756 dbSNP
rs1391263477 770 dbSNP
rs958338906 772 dbSNP
rs1363808623 777 dbSNP
rs1031013221 778 dbSNP
rs753631808 782 dbSNP
rs1443126868 783 dbSNP
rs149031402 784 dbSNP
rs867771880 801 dbSNP
rs146408343 822 dbSNP
rs1364396881 833 dbSNP
rs1019490513 839 dbSNP
rs1270264255 850 dbSNP
rs1296621908 851 dbSNP
rs1203724403 852 dbSNP
rs1360015720 856 dbSNP
rs1006714471 857 dbSNP
rs536867603 866 dbSNP
rs1342798065 880 dbSNP
rs1307282855 887 dbSNP
rs1276628804 897 dbSNP
rs188499426 898 dbSNP
rs183010278 903 dbSNP
rs1283871460 906 dbSNP
rs751616814 912 dbSNP
rs550565763 921 dbSNP
rs761953702 921 dbSNP
rs116937064 924 dbSNP
rs938324778 934 dbSNP
rs1409233523 939 dbSNP
rs559384023 941 dbSNP
rs191405156 942 dbSNP
rs948263591 942 dbSNP
rs1166007009 952 dbSNP
rs1171001079 952 dbSNP
rs1364322467 952 dbSNP
rs916769993 953 dbSNP
rs1413515003 956 dbSNP
rs1319116699 957 dbSNP
rs990024933 958 dbSNP
rs1163544380 961 dbSNP
rs958175836 962 dbSNP
rs528878826 963 dbSNP
rs991180797 964 dbSNP
rs978104657 965 dbSNP
rs189189133 966 dbSNP
rs1383273819 967 dbSNP
rs1220129067 984 dbSNP
rs1320965088 988 dbSNP
rs187732560 994 dbSNP
rs568071162 999 dbSNP
rs1247970767 1001 dbSNP
rs1006765051 1002 dbSNP
rs770061729 1003 dbSNP
rs1312794293 1008 dbSNP
rs752198079 1019 dbSNP
rs1358768371 1022 dbSNP
rs1286644212 1032 dbSNP
rs1409335271 1033 dbSNP
rs143920735 1034 dbSNP
rs1026833458 1038 dbSNP
rs1310455320 1039 dbSNP
rs371947730 1043 dbSNP
rs1228036648 1044 dbSNP
rs542532568 1044 dbSNP
rs111708236 1056 dbSNP
rs896941097 1058 dbSNP
rs368570800 1060 dbSNP
rs748544092 1066 dbSNP
rs1324629342 1070 dbSNP
rs1015344182 1073 dbSNP
rs764255676 1076 dbSNP
rs760921387 1078 dbSNP
rs1157914499 1091 dbSNP
rs182131817 1095 dbSNP
rs1413514223 1098 dbSNP
rs1044059199 1104 dbSNP
rs1185851219 1107 dbSNP
rs141390224 1108 dbSNP
rs1367211082 1110 dbSNP
rs476861 1114 dbSNP
rs1159175779 1116 dbSNP
rs772405251 1119 dbSNP
rs189608652 1134 dbSNP
rs541052890 1144 dbSNP
rs936833128 1145 dbSNP
rs879751973 1155 dbSNP
rs1223536777 1157 dbSNP
rs573669354 1157 dbSNP
rs555452609 1163 dbSNP
rs978157166 1168 dbSNP
rs1266528306 1169 dbSNP
rs763494415 1172 dbSNP
rs1158687845 1176 dbSNP
rs1397566410 1187 dbSNP
rs944087614 1188 dbSNP
rs1454358050 1212 dbSNP
rs537508836 1220 dbSNP
rs62217369 1221 dbSNP
rs769267258 1230 dbSNP
rs569753977 1237 dbSNP
rs557979136 1240 dbSNP
rs1330006316 1250 dbSNP
rs1290294544 1252 dbSNP
rs771347199 1255 dbSNP
rs1217485309 1259 dbSNP
rs985837957 1265 dbSNP
rs1339764753 1273 dbSNP
rs954017740 1274 dbSNP
rs73380290 1275 dbSNP
rs973966677 1282 dbSNP
rs777447052 1285 dbSNP
rs755786839 1292 dbSNP
rs1015396490 1295 dbSNP
rs1002639958 1296 dbSNP
rs1319542952 1299 dbSNP
rs1227319342 1302 dbSNP
rs906921010 1312 dbSNP
rs587087 1321 dbSNP
rs1012976990 1323 dbSNP
rs1325302414 1327 dbSNP
rs548220614 1328 dbSNP
rs186332858 1333 dbSNP
rs1205913405 1340 dbSNP
rs1432052578 1343 dbSNP
rs1425840142 1348 dbSNP
rs181753545 1359 dbSNP
rs878944047 1364 dbSNP
rs1247181628 1372 dbSNP
rs1054439440 1395 dbSNP
rs1371846764 1397 dbSNP
rs553416222 1400 dbSNP
rs936907256 1401 dbSNP
rs902695247 1406 dbSNP
rs1209045007 1412 dbSNP
rs374424009 1421 dbSNP
rs1183181216 1432 dbSNP
rs534986007 1436 dbSNP
rs944139995 1440 dbSNP
rs1270192056 1444 dbSNP
rs146616585 1452 dbSNP
rs1311647640 1453 dbSNP
rs985516661 1475 dbSNP
rs372424314 1476 dbSNP
rs868309546 1487 dbSNP
rs919903356 1493 dbSNP
rs1221423236 1494 dbSNP
rs879018904 1499 dbSNP
rs567645607 1503 dbSNP
rs751374365 1504 dbSNP
rs555934528 1506 dbSNP
rs369599587 1510 dbSNP
rs1471096897 1521 dbSNP
rs1173905960 1531 dbSNP
rs144378922 1534 dbSNP
rs1015447348 1543 dbSNP
rs1300684380 1549 dbSNP
rs545626207 1553 dbSNP
rs533350378 1558 dbSNP
rs1178237338 1560 dbSNP
rs1427749346 1566 dbSNP
rs971158632 1567 dbSNP
rs1408661313 1569 dbSNP
rs1023135580 1571 dbSNP
rs1012620297 1572 dbSNP
rs559640360 1574 dbSNP
rs541291325 1576 dbSNP
rs753878491 1579 dbSNP
rs1032642745 1580 dbSNP
rs12386277 1587 dbSNP
rs12386289 1588 dbSNP
rs762210873 1592 dbSNP
rs760794980 1598 dbSNP
rs1213042520 1604 dbSNP
rs1008332876 1620 dbSNP
rs891244011 1620 dbSNP
rs1482374404 1621 dbSNP
rs9982153 1621 dbSNP
rs932712906 1626 dbSNP
rs1274502503 1629 dbSNP
rs919939947 1643 dbSNP
rs537545549 1655 dbSNP
rs939946009 1656 dbSNP
rs1310213528 1677 dbSNP
rs371055016 1679 dbSNP
rs1197014486 1680 dbSNP
rs1379364887 1696 dbSNP
rs1377354066 1697 dbSNP
rs981310529 1699 dbSNP
rs570203895 1703 dbSNP
rs557953823 1707 dbSNP
rs1368574880 1708 dbSNP
rs957122694 1717 dbSNP
rs539646207 1746 dbSNP
rs1033105673 1763 dbSNP
rs565852205 1795 dbSNP
rs3366 1797 dbSNP
rs1366483142 1803 dbSNP
rs10340 1815 dbSNP
rs199610182 1818 dbSNP
rs576741475 1818 dbSNP
rs775692014 1833 dbSNP
rs773747141 1834 dbSNP
rs1257065280 1841 dbSNP
rs1008399781 1855 dbSNP
rs891290873 1856 dbSNP
rs1482097569 1859 dbSNP
rs772001332 1873 dbSNP
rs1206483337 1882 dbSNP
rs139330449 1893 dbSNP
rs997350377 1905 dbSNP
rs898564500 1907 dbSNP
rs1244451634 1917 dbSNP
rs568068424 1920 dbSNP
rs939999734 1922 dbSNP
rs1314379289 1931 dbSNP
rs908494331 1937 dbSNP
rs1349310848 1938 dbSNP
rs549797659 1938 dbSNP
rs1308617822 1942 dbSNP
rs1045688937 1953 dbSNP
rs1388403022 1961 dbSNP
rs531200801 1968 dbSNP
rs181440077 1976 dbSNP
rs915750007 1977 dbSNP
rs1340577316 1988 dbSNP
rs551956400 2020 dbSNP
rs1458186384 2029 dbSNP
rs991309697 2037 dbSNP
rs774593197 2042 dbSNP
rs957377574 2045 dbSNP
rs771419658 2048 dbSNP
rs925708537 2049 dbSNP
rs1167346718 2058 dbSNP
rs977097393 2065 dbSNP
rs1061176 2075 dbSNP
rs868530342 2079 dbSNP
rs1061178 2085 dbSNP
rs533586673 2100 dbSNP
rs1205093509 2103 dbSNP
rs1411327345 2114 dbSNP
rs766749217 2115 dbSNP
rs967024764 2115 dbSNP
rs987030504 2132 dbSNP
rs1182910212 2133 dbSNP
rs559478144 2134 dbSNP
rs1065257 2136 dbSNP
rs565999823 2136 dbSNP
rs1429357640 2141 dbSNP
rs1265820657 2153 dbSNP
rs1028936419 2161 dbSNP
rs1195009262 2210 dbSNP
rs545455055 2220 dbSNP
rs529589522 2223 dbSNP
rs150848675 2243 dbSNP
rs1017021747 2251 dbSNP
rs543832885 2252 dbSNP
rs371450063 2259 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 150094.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' guUUGUGACGUUAGUGAAAa 5'
            |:||||    |:||||| 
Target 5' -aAGCACU----UUACUUUc 3'
 		1 - 15
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000270162.6 | 3UTR | AAGCACUUUACUUUCACG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
302 hsa-miR-548ah-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057035 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT060559 CCND1 cyclin D1 2 12
MIRT061211 MED17 mediator complex subunit 17 2 2
MIRT061700 BTG2 BTG anti-proliferation factor 2 2 4
MIRT064457 GPR137B G protein-coupled receptor 137B 2 2
MIRT065680 ACVR1B activin A receptor type 1B 2 6
MIRT068902 TPRG1L tumor protein p63 regulated 1 like 2 2
MIRT069414 ZFYVE21 zinc finger FYVE-type containing 21 2 8
MIRT069711 FOXJ3 forkhead box J3 2 2
MIRT071220 FCF1 FCF1, rRNA-processing protein 2 2
MIRT072258 B2M beta-2-microglobulin 2 10
MIRT073631 IGF1R insulin like growth factor 1 receptor 2 4
MIRT077074 KRT10 keratin 10 2 8
MIRT080711 ZCCHC2 zinc finger CCHC-type containing 2 2 2
MIRT081230 MIDN midnolin 2 8
MIRT085792 FMNL2 formin like 2 2 2
MIRT088055 UBXN2A UBX domain protein 2A 2 4
MIRT089219 ACTR2 ARP2 actin related protein 2 homolog 2 6
MIRT090626 PLS1 plastin 1 2 2
MIRT091390 EIF4A2 eukaryotic translation initiation factor 4A2 2 2
MIRT092424 APPL1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 2 2
MIRT094197 THAP6 THAP domain containing 6 2 2
MIRT098283 SMIM13 small integral membrane protein 13 2 6
MIRT099150 MYLIP myosin regulatory light chain interacting protein 2 12
MIRT103209 SP4 Sp4 transcription factor 2 6
MIRT108713 XIAP X-linked inhibitor of apoptosis 2 2
MIRT114051 AKAP11 A-kinase anchoring protein 11 2 12
MIRT135494 RAB5B RAB5B, member RAS oncogene family 2 8
MIRT156020 SIK1 salt inducible kinase 1 2 2
MIRT173035 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT182263 POU2F1 POU class 2 homeobox 1 2 2
MIRT182529 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT184889 ULK1 unc-51 like autophagy activating kinase 1 2 2
MIRT187295 CLIC4 chloride intracellular channel 4 2 4
MIRT187488 PCBP2 poly(rC) binding protein 2 2 4
MIRT188194 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT188215 RAP1B RAP1B, member of RAS oncogene family 2 2
MIRT192288 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT201087 ZNF805 zinc finger protein 805 2 2
MIRT212617 RBPJ recombination signal binding protein for immunoglobulin kappa J region 2 8
MIRT213196 REST RE1 silencing transcription factor 2 2
MIRT213334 KIAA0232 KIAA0232 2 2
MIRT213444 DCK deoxycytidine kinase 2 4
MIRT220129 CAV1 caveolin 1 2 2
MIRT230191 AKAP17A A-kinase anchoring protein 17A 2 2
MIRT242730 ZNF714 zinc finger protein 714 2 2
MIRT242759 FNBP1L formin binding protein 1 like 2 2
MIRT257297 FOXC1 forkhead box C1 2 2
MIRT258911 LAPTM4B lysosomal protein transmembrane 4 beta 2 4
MIRT260958 SCD stearoyl-CoA desaturase 2 2
MIRT263458 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT284918 NFAT5 nuclear factor of activated T-cells 5 2 6
MIRT291947 TPM4 tropomyosin 4 2 2
MIRT297340 BCL2L11 BCL2 like 11 2 8
MIRT308819 NPNT nephronectin 2 2
MIRT311518 ISOC1 isochorismatase domain containing 1 2 2
MIRT314181 OCLN occludin 2 4
MIRT315706 NUS1 NUS1 dehydrodolichyl diphosphate synthase subunit 2 2
MIRT331762 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 2 4
MIRT338783 STMN1 stathmin 1 2 2
MIRT341459 ATP6V0B ATPase H+ transporting V0 subunit b 2 2
MIRT344226 SRSF11 serine and arginine rich splicing factor 11 2 2
MIRT355851 SGMS2 sphingomyelin synthase 2 2 4
MIRT409854 RLIM ring finger protein, LIM domain interacting 2 2
MIRT442758 NRIP3 nuclear receptor interacting protein 3 2 2
MIRT443716 LLPH LLP homolog, long-term synaptic facilitation 2 2
MIRT444315 SREK1IP1 SREK1 interacting protein 1 2 2
MIRT444387 ZNF623 zinc finger protein 623 2 2
MIRT445543 TBC1D8 TBC1 domain family member 8 2 2
MIRT447791 NUPL2 nucleoporin like 2 2 2
MIRT447963 WDR77 WD repeat domain 77 2 2
MIRT448311 WNK3 WNK lysine deficient protein kinase 3 2 2
MIRT448363 TSR1 TSR1, ribosome maturation factor 2 6
MIRT448389 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT448801 GLIS3 GLIS family zinc finger 3 2 2
MIRT450193 TMEM9B TMEM9 domain family member B 2 2
MIRT453365 ZNF3 zinc finger protein 3 2 2
MIRT453579 CRCP CGRP receptor component 2 2
MIRT454815 NEDD9 neural precursor cell expressed, developmentally down-regulated 9 2 2
MIRT455376 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT456971 SPAM1 sperm adhesion molecule 1 2 2
MIRT458297 FUT10 fucosyltransferase 10 2 2
MIRT458872 CD55 CD55 molecule (Cromer blood group) 2 2
MIRT460528 S100A11 S100 calcium binding protein A11 2 4
MIRT462130 AKR7A2 aldo-keto reductase family 7 member A2 2 4
MIRT463268 ZFYVE9 zinc finger FYVE-type containing 9 2 2
MIRT463618 ZBTB33 zinc finger and BTB domain containing 33 2 4
MIRT465229 TRIP10 thyroid hormone receptor interactor 10 2 2
MIRT465831 TMEM64 transmembrane protein 64 2 2
MIRT466460 TFAM transcription factor A, mitochondrial 2 8
MIRT467891 SLC22A23 solute carrier family 22 member 23 2 2
MIRT468847 RRM2 ribonucleotide reductase regulatory subunit M2 2 2
MIRT469854 PXK PX domain containing serine/threonine kinase like 2 8
MIRT469885 PURB purine rich element binding protein B 2 4
MIRT470448 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 8
MIRT471867 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 4
MIRT472053 NPAT nuclear protein, coactivator of histone transcription 2 2
MIRT472163 NIN ninein 2 4
MIRT474279 LARP1 La ribonucleoprotein domain family member 1 2 6
MIRT474602 KLF6 Kruppel like factor 6 2 2
MIRT475468 HSPA8 heat shock protein family A (Hsp70) member 8 2 6
MIRT476648 G2E3 G2/M-phase specific E3 ubiquitin protein ligase 2 2
MIRT476878 FEM1B fem-1 homolog B 2 2
MIRT476906 FBXL5 F-box and leucine rich repeat protein 5 2 12
MIRT477188 F3 coagulation factor III, tissue factor 2 8
MIRT477291 ERGIC2 ERGIC and golgi 2 2 2
MIRT478410 DCAF8 DDB1 and CUL4 associated factor 8 2 2
MIRT479045 COIL coilin 2 10
MIRT479061 CNOT6L CCR4-NOT transcription complex subunit 6 like 2 8
MIRT479273 CHSY1 chondroitin sulfate synthase 1 2 2
MIRT480523 C11orf30 EMSY, BRCA2 interacting transcriptional repressor 2 10
MIRT480557 BZW1 basic leucine zipper and W2 domains 1 2 2
MIRT480781 BMP2 bone morphogenetic protein 2 2 2
MIRT481213 ATXN7L3B ataxin 7 like 3B 2 2
MIRT481341 ATL3 atlastin GTPase 3 2 2
MIRT481800 APEX1 apurinic/apyrimidinic endodeoxyribonuclease 1 2 2
MIRT481934 ANKRD11 ankyrin repeat domain 11 2 12
MIRT481962 ANKH ANKH inorganic pyrophosphate transport regulator 2 8
MIRT484826 ZNFX1 zinc finger NFX1-type containing 1 2 4
MIRT484913 ZFYVE26 zinc finger FYVE-type containing 26 2 4
MIRT485132 RRAS2 RAS related 2 2 6
MIRT485197 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 4
MIRT492016 UGCG UDP-glucose ceramide glucosyltransferase 2 2
MIRT492366 SEMA7A semaphorin 7A (John Milton Hagen blood group) 2 2
MIRT493120 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 6
MIRT493391 KIAA0513 KIAA0513 2 6
MIRT493668 HBP1 HMG-box transcription factor 1 2 2
MIRT494069 DUSP2 dual specificity phosphatase 2 2 4
MIRT494385 SOLH calpain 15 1 1
MIRT494776 ANKRD33B ankyrin repeat domain 33B 2 10
MIRT496737 TRIM31 tripartite motif containing 31 2 2
MIRT497422 FAM46A family with sequence similarity 46 member A 2 2
MIRT498160 FEM1C fem-1 homolog C 2 8
MIRT498357 ABHD17B abhydrolase domain containing 17B 2 2
MIRT499911 KIAA1191 KIAA1191 2 4
MIRT500764 TMEM127 transmembrane protein 127 2 6
MIRT501461 PTPN4 protein tyrosine phosphatase, non-receptor type 4 2 8
MIRT501956 MAPRE3 microtubule associated protein RP/EB family member 3 2 8
MIRT502368 GIGYF1 GRB10 interacting GYF protein 1 2 8
MIRT502408 GATA6 GATA binding protein 6 2 8
MIRT503445 GINS4 GINS complex subunit 4 2 4
MIRT503565 MDM2 MDM2 proto-oncogene 2 4
MIRT503614 ZNF780A zinc finger protein 780A 2 2
MIRT503833 TMEM242 transmembrane protein 242 2 4
MIRT504102 C9orf40 chromosome 9 open reading frame 40 2 6
MIRT505495 SRSF2 serine and arginine rich splicing factor 2 2 4
MIRT505741 SEPT2 septin 2 2 4
MIRT505977 RAB11FIP1 RAB11 family interacting protein 1 2 4
MIRT506229 PFKP phosphofructokinase, platelet 2 8
MIRT506432 NAGK N-acetylglucosamine kinase 2 6
MIRT506455 NACC2 NACC family member 2 2 4
MIRT506515 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 4
MIRT506626 MARCH6 membrane associated ring-CH-type finger 6 2 8
MIRT506677 LZIC leucine zipper and CTNNBIP1 domain containing 2 4
MIRT506839 KIF23 kinesin family member 23 2 4
MIRT506866 KIAA1147 KIAA1147 2 2
MIRT507190 FZD9 frizzled class receptor 9 2 6
MIRT507236 FOXK2 forkhead box K2 2 4
MIRT507363 FAM129A family with sequence similarity 129 member A 2 6
MIRT508089 ANKRD52 ankyrin repeat domain 52 2 2
MIRT508230 ZNF850 zinc finger protein 850 2 6
MIRT511090 NIPA1 non imprinted in Prader-Willi/Angelman syndrome 1 2 4
MIRT511258 KLHL36 kelch like family member 36 2 6
MIRT512681 ENO4 enolase family member 4 2 2
MIRT512754 CD59 CD59 molecule (CD59 blood group) 2 4
MIRT513471 NARS asparaginyl-tRNA synthetase 2 6
MIRT513903 GRB10 growth factor receptor bound protein 10 2 6
MIRT513985 CEP97 centrosomal protein 97 2 2
MIRT513999 CENPQ centromere protein Q 2 4
MIRT514036 BNIP2 BCL2 interacting protein 2 2 2
MIRT514106 EPS15L1 epidermal growth factor receptor pathway substrate 15 like 1 2 6
MIRT515002 DNTTIP2 deoxynucleotidyltransferase terminal interacting protein 2 2 2
MIRT517025 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT517533 ITM2C integral membrane protein 2C 2 6
MIRT517825 KIAA2018 upstream transcription factor family member 3 2 4
MIRT524333 CRLF3 cytokine receptor like factor 3 2 4
MIRT524700 BTG3 BTG anti-proliferation factor 3 2 8
MIRT525208 ZNF93 zinc finger protein 93 2 2
MIRT527210 XIRP2 xin actin binding repeat containing 2 2 2
MIRT527478 CLEC12B C-type lectin domain family 12 member B 2 4
MIRT527889 SERF1B small EDRK-rich factor 1B 2 2
MIRT529345 SERF1A small EDRK-rich factor 1A 2 2
MIRT529613 H1F0 H1 histone family member 0 2 2
MIRT531822 ZNF264 zinc finger protein 264 2 6
MIRT531843 MTPAP mitochondrial poly(A) polymerase 2 4
MIRT532091 RTTN rotatin 2 2
MIRT533391 U2SURP U2 snRNP associated SURP domain containing 2 6
MIRT533837 TGFBR2 transforming growth factor beta receptor 2 2 6
MIRT533885 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT534006 SUV420H1 lysine methyltransferase 5B 2 2
MIRT534053 STC2 stanniocalcin 2 2 2
MIRT534635 RNASEH1 ribonuclease H1 2 4
MIRT537732 ELAVL2 ELAV like RNA binding protein 2 2 2
MIRT537782 EIF4H eukaryotic translation initiation factor 4H 2 6
MIRT538015 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT538717 CAPRIN2 caprin family member 2 2 4
MIRT539719 EIF3H eukaryotic translation initiation factor 3 subunit H 2 2
MIRT540521 CXCL10 C-X-C motif chemokine ligand 10 2 2
MIRT541290 GLO1 glyoxalase I 2 2
MIRT541747 ZC3HAV1 zinc finger CCCH-type containing, antiviral 1 2 2
MIRT542030 PEX2 peroxisomal biogenesis factor 2 2 2
MIRT542067 SLC25A46 solute carrier family 25 member 46 2 2
MIRT542509 WDR13 WD repeat domain 13 2 2
MIRT542717 RPS15A ribosomal protein S15a 2 2
MIRT542890 KLHL15 kelch like family member 15 2 4
MIRT542953 GDF11 growth differentiation factor 11 2 2
MIRT543588 RPF2 ribosome production factor 2 homolog 2 6
MIRT544312 IFNGR1 interferon gamma receptor 1 2 4
MIRT545143 ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif 9 2 2
MIRT545210 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT546255 TNFRSF21 TNF receptor superfamily member 21 2 2
MIRT546294 TMEM200C transmembrane protein 200C 2 4
MIRT546459 SLC5A3 solute carrier family 5 member 3 2 4
MIRT546821 RAP2C RAP2C, member of RAS oncogene family 2 2
MIRT546843 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT547089 PLRG1 pleiotropic regulator 1 2 2
MIRT548229 FJX1 four jointed box 1 2 4
MIRT548339 EPHA4 EPH receptor A4 2 2
MIRT548392 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 2 4
MIRT548464 EGLN3 egl-9 family hypoxia inducible factor 3 2 2
MIRT548861 CERCAM cerebral endothelial cell adhesion molecule 2 2
MIRT549108 C16orf70 chromosome 16 open reading frame 70 2 4
MIRT549252 ATXN1 ataxin 1 2 2
MIRT549415 ADAR adenosine deaminase, RNA specific 2 2
MIRT549830 LUZP2 leucine zipper protein 2 2 2
MIRT550101 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT550109 TAF6 TATA-box binding protein associated factor 6 2 2
MIRT550242 PVR poliovirus receptor 2 4
MIRT552212 F2RL3 F2R like thrombin or trypsin receptor 3 2 2
MIRT552640 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT552693 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 4
MIRT553033 USP48 ubiquitin specific peptidase 48 2 2
MIRT553475 TNKS2 tankyrase 2 2 2
MIRT554302 SIPA1L2 signal induced proliferation associated 1 like 2 2 2
MIRT554330 SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 2 2
MIRT554476 SAMD12 sterile alpha motif domain containing 12 2 2
MIRT554531 RUFY2 RUN and FYVE domain containing 2 2 2
MIRT554562 RRN3 RRN3 homolog, RNA polymerase I transcription factor 2 2
MIRT554612 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT554745 RHOC ras homolog family member C 2 2
MIRT554803 RGMB repulsive guidance molecule family member b 2 4
MIRT555000 RAB39B RAB39B, member RAS oncogene family 2 2
MIRT555166 PTPDC1 protein tyrosine phosphatase domain containing 1 2 2
MIRT555242 PRICKLE2 prickle planar cell polarity protein 2 2 2
MIRT556282 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT557830 FOXJ2 forkhead box J2 2 2
MIRT558221 EFCAB14 EF-hand calcium binding domain 14 2 4
MIRT558332 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558943 CBX1 chromobox 1 2 2
MIRT558965 CAMLG calcium modulating ligand 2 4
MIRT559440 ARSJ arylsulfatase family member J 2 2
MIRT561378 TXNIP thioredoxin interacting protein 2 2
MIRT561646 RUNX3 runt related transcription factor 3 2 2
MIRT562223 HMGB2 high mobility group box 2 2 2
MIRT562560 CCDC71L coiled-coil domain containing 71 like 2 4
MIRT562973 LRPAP1 LDL receptor related protein associated protein 1 2 2
MIRT563387 DSPP dentin sialophosphoprotein 2 2
MIRT563439 TRIM27 tripartite motif containing 27 2 2
MIRT565554 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 2
MIRT566879 LRP12 LDL receptor related protein 12 2 2
MIRT567051 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT567121 ITGB1 integrin subunit beta 1 2 2
MIRT567551 FGFR1OP FGFR1 oncogene partner 2 2
MIRT567628 FAM210A family with sequence similarity 210 member A 2 2
MIRT567785 DGAT2 diacylglycerol O-acyltransferase 2 2 2
MIRT567917 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT570955 RBM12B RNA binding motif protein 12B 2 2
MIRT571022 CKAP2 cytoskeleton associated protein 2 2 2
MIRT571221 F2R coagulation factor II thrombin receptor 2 2
MIRT571702 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT571732 RPL17-C18orf32 RPL17-C18orf32 readthrough 2 2
MIRT571862 NKIRAS1 NFKB inhibitor interacting Ras like 1 2 2
MIRT572151 DESI1 desumoylating isopeptidase 1 2 2
MIRT572217 C18orf32 chromosome 18 open reading frame 32 2 2
MIRT573377 LIMA1 LIM domain and actin binding 1 2 2
MIRT573924 SNAP47 synaptosome associated protein 47 2 2
MIRT574720 HAUS8 HAUS augmin like complex subunit 8 2 2
MIRT575857 Rab1 RAB1A, member RAS oncogene family 1 1
MIRT608982 PRKCB protein kinase C beta 2 2
MIRT611007 BRI3BP BRI3 binding protein 2 2
MIRT613680 SH3KBP1 SH3 domain containing kinase binding protein 1 2 2
MIRT615455 FAXC failed axon connections homolog 2 2
MIRT615880 MEMO1 mediator of cell motility 1 2 2
MIRT616444 FAM126B family with sequence similarity 126 member B 2 2
MIRT623529 KCNK10 potassium two pore domain channel subfamily K member 10 2 2
MIRT624425 CBX8 chromobox 8 2 2
MIRT625087 C15orf41 chromosome 15 open reading frame 41 2 2
MIRT634463 PAK6 p21 (RAC1) activated kinase 6 2 2
MIRT640011 OSTM1 osteopetrosis associated transmembrane protein 1 2 2
MIRT641801 USP32 ubiquitin specific peptidase 32 2 2
MIRT664802 LIAS lipoic acid synthetase 2 4
MIRT682525 GJD3 gap junction protein delta 3 2 2
MIRT688719 CPS1 carbamoyl-phosphate synthase 1 2 2
MIRT693162 THEM4 thioesterase superfamily member 4 2 2
MIRT694572 RBMXL1 RNA binding motif protein, X-linked like 1 2 2
MIRT699679 SFT2D2 SFT2 domain containing 2 2 2
MIRT701600 MYPN myopalladin 2 2
MIRT701967 MINK1 misshapen like kinase 1 2 2
MIRT702948 HIPK3 homeodomain interacting protein kinase 3 2 2
MIRT702962 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT709508 RHOH ras homolog family member H 2 2
MIRT725232 PEA15 phosphoprotein enriched in astrocytes 15 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-548ah-5p Temozolomide 5394 NSC362856 approved sensitive High Glioma tissue
hsa-miR-548ah-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-548ah-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-548ah-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-548ah-5p Cetuximab resistant tissue (colorectal carcinoma)

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