miRTarBase - #MIRT178049


—
pre-miRNA Information
pre-miRNA hsa-mir-548am   
Genomic Coordinates chrX: 16627012 - 16627085
Description Homo sapiens miR-548am stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548am-5p
Sequence 10| AAAAGUAAUUGCGGUUUUUGCC |31
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 3 X - 16627074 29233923 MiREDiBase
A-to-I 4 X - 16627073 29233923 MiREDiBase
A-to-I 7 X - 16627070 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs181147953 1 dbSNP
rs1023899452 12 dbSNP
rs1319380894 14 dbSNP
rs768483765 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SAMD8   
Synonyms HEL-177, SMSr
Description sterile alpha motif domain containing 8
Transcript NM_144660   
Other Transcripts NM_001174156   
Expression
Putative miRNA Targets on SAMD8
3'UTR of SAMD8
(miRNA target sites are highlighted)		 
>SAMD8|NM_144660|3'UTR
   1 CTAGCTGCAGTGAAGGCTGTGGGAAGGGTGTCAGATCCTGTGAAGAATGGCAAAACAGCCTGACCTGAGAAACGTGACTG
  81 AGAAGCATTGGAAGGAATGTAGCTTTAAAATGATCTTTCTGTCCTTTTCCTAGATACACCAAGAAGCTGGAATTTCTTGC
 161 ACACTTTATCCTGGGTTCTCAACCTCTTTGGAATCTTCTTCATCTTGGCTGCCCATGAACATTATTCTATTGATGTGTTT
 241 ATTGCTTTTTATATAACAACAAGACTCTTTTTGTACTACCATACTCTGGCCAATACCAGAGCATATCAGCAGAGTAGGAG
 321 AGCAAGGATTTGGTTTCCCATGTTCTCTTTTTTTGAATGCAATGTTAATGGCACAGTACCTAATGAATATTGTTGGCCAT
 401 TTTCAAAACCAGCAATAATGAAAAGACTAATTGGATGAATACTATCTTTCTAATGAATTTGTGATTAAATATATAATAGT
 481 TGTTGAAAATGAGTAACTTTGCGTTCTCCCCCTAGGTTGTTCTTAGATGCCTGGCTTATGTGTTGACAAAGTAAAGTTTT
 561 CTGTTCTGAGCAAAGTTATGATTATAAAAAGCAAGAAAGAACAATCAAGAGTCCTTATGTAGCTATTTGAACAGAAAGCT
 641 TAAGTAGATGTTTTCTGCCCCTTCTCTTTAGGAAGACTTAATGTTGTGATTGAAGTCAGGCTGTACCCTTACCTGTTGAG
 721 TATTTGCTTATTGAACTTTAAACAAGTCAACTTGAGCAGTTTGCTGGTTGAGGAATTTTCATTGATTTCCAGTAGGGCTC
 801 TAGTCAAGAAATAATATGTTTTGAAGCTCCTTATTACCTTTAGAAGAAGAAACCCTAACAAGTGACAGTACTTGTTCTTT
 881 GGACTAATCTTTGTTTCATTTTAAAAAATGCAACCCTGGGACATGATCTGTTTTACTGACAAAGAGTTTTTGCCTTCTGA
 961 ACCATCTTTAAATATACTGAGCATACCAGGATGCCTGAAATAAGAAGAGAATGAAAGAGGCCATAGATGACGTGACAGAG
1041 TACTGGCTAGGATGCCATTGGTCTCCTCATTAATGCAAATGTAGGGCTGGCATATTTCACCAAAGATGCAACAAAAGATG
1121 CAGTGCCAGTGTGACCCTCAGTGAGTATTCATGAGGGAAAAATGGCTGCATCCATAAAAATAAATGGGCTTAATGTTAGT
1201 GGTATAGGTACCCAGAATAACTTCTTTGTGCTATAGTTGTTAGATGACAGTTCAATTTTATGCTTTTTTAATGGTGTTAT
1281 TAAATGAGCCAAATAGGAGTGTTTTACCAGATGTTAGATAAAGTTCTTAATGCCGTTAAGTAGGGAGGTATGCATGCAAA
1361 GAATTGTTTTCTCCTGAAAAGAAACTTACAGCACGCAAAATATAACTTTTTGGTTTTTGAAATTTATCATTCTTGGCTGT
1441 TGGAAGTAAACAGTCTCAGACATACTTGGATATGAAAAAGTTTCGTTGTTTTTTACTTTTAAATATAATGGTGTATATAC
1521 ATTCTTTCTATTTAGTCTTAATTTGGCAGTCAGGAAGTGATATAACTTAGCTGCTATTTACAACACTAGAAATTTAGTAC
1601 TTTAAGTAATTTCACATCTATGATAACATTTGTTACTTTATTTTTAATGATTTTTTTACAGTAGTTATGACAGTAGGATG
1681 GTTATGGAATTGGAATTTAAACTCCCAACTAATGAGCTTAAGCTGCTTGGAATATTAATTATGTAGTTTTTACATTCCAT
1761 TTTAAAACAAAAACTTAGAAAAGGTGCTGGCATTCTGAGGCCTGCAATTAGGCCACATAGCAGAAGCTTGCTCCTTCCTT
1841 ATCTGGGTGAAATATTTTATTTTTGCACTTTGAGTCATATTCCCACCCCTGTATAAGCTACATAGGAGCCTGAATGAATT
1921 GGGTAGGAAAGGAAATTATGCAAACAAGTCTCAGCTAGTGCTGAATGACCCCAATTTGGGTCTGCTGTGAACATCATTTT
2001 TGTATTTCTCACTTGAGAAATGCTGCAAGGCAATTCAACTTTTATGCTTTTAAATCTCACAACTCAGAATCTGATATCTT
2081 AAATCACTGATTCTGTTACATGCTAGGAACAAAATGCCAACATCTCATGTAAAGAAGTTGCATAATCATGAAAAATAAAG
2161 GATGTTTCCTATGCCAGTTAGAGTGGTTTGACCCTTCAGGTAAAAAGATATGTTACTGTTATTTTTCTACGTGACAGAAC
2241 AGACTGAATTTAGCTAGGGAGGCAGTGATGTTGGCTTTTGGGAAAGGGTTCAAAAAACTGTATGGCAACATTAATGCTAA
2321 AATGTTAAGCCGAGTGCAGTGGTGCAAGGCTATAGTCCCAGGTTCTGAGGAGGCTGAGGCAGGAGGATTGCTTGAGGCCA
2401 GGAGTTAGAAACTAGAGTGTGTTATAACGCCTATGAATAACCACTGCATTCCAGCCCGGGCAAGGTAGCAAGACCCATTC
2481 TCTTAAAAACATGGCTGGGTGCAATGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCGGATGGCTTGA
2561 GGTCAGGAGTTCGAGATTAGCCTGGCCAATATGGTGAAACCTCATCTCTACTAAAACTACAAAAATTAGCTGGGCATGGT
2641 GGCACGCACTTGTAATCCCAGCTACTTGGGAGACTGAGGAACAAGAAACACTTGAACCCAGGAGGTGGAGTTTGCATTGA
2721 GCTGAGATCACTCCACTGCACTCCAGCCTAGGTGACAGAGTGAGACTCCATCTCAAAACGAAACAAAACAAAACAAAACA
2801 AATTAGAGTGGGTGCAGTGTCTAATGCCTGTAATCGCAGCACTTTGGGAGGCTAAGGCAGGAGGATCACTTGAGCTCAGG
2881 TAAAAGAGACCAGCCTGGGCAACAAAGTGAGACCTCATCCCCACAAAAAGTTGTTTAGAAAATTAGCTGGGCGTGGTGAT
2961 GCATGCCTGTGGTCCCAGCTACATGGGAGGCTGAGGCAGAAGGATCACTTGAGCCCAAGGAGGTTGAGGCTACAGTGAGC
3041 TGTAATCATGCCACTGCACTCCAGCCTTGGGGACAGAGTGAGACCCTGCCTCAATCAATCAATCAATCAATAACAAAAAC
3121 TTAAATAGCTATTAACCTCAGTCTTCTTTCCTTCATATAAATTCTATTCTAAGACCAAATAGAAAAATAAATGTAACTAA
3201 CTTTGCAGAGCTATTGACATTGAGAGACCTAACAACAGACTGCAATGGGGATTGTAAAATAACTTTTCAGCCTTGCACTT
3281 GCTCATATATGTTTTGAGAAAAATGTAAGTTAGGTATAACTTATTGTTTTAACTATTATAAGGCAGTGTTTACATAAATT
3361 AATCATCTCTTTCTTGGAAAACATTGAGACAAATTTATTTTCAGTTTTACTTAAACATGAAACCTGTATTTTAGTTGCTT
3441 TTTGTTTTGTCCAGAAATTTCCAGATTTTGTCTTCATTTTTTTTCCTGGTTAAAATCTAAACCATAGTGAAGATAGTATT
3521 TATGTTTACATTTTATCTGTGAATGTGGCTAAGCAGAGAAGCTACATGGCTTTGGTCTACATATTTTTTGACCTTGTATT
3601 TGGTTCTGTAGTTGCAGACTTGTGAAGGCTTACATCATCATGGAGACTTTAGTAAGGAAGGAACCAAAAGGTTTTTGGTT
3681 TGGGGATGCAAACTGGAGGTTATGTTACAAGTCTTCAATGCATTTTCTGTGTTCCTGGCAGCAGTGTTGCCTTTTTTTTT
3761 CTTTTCCTTTTTTTTTTTTAAAGACCAGGTAGGGTAGTGTTATTGAAGGGTAATTGAAGAGTGGTAGAGAGTAAGAGGTT
3841 TTGAAGGAGGCAGGTTTGCTGTTATCACAAAATAATTTGGGGGAAACCTTTCGTGGCTGTGCTGCAAGAATTCTTTATGT
3921 GGCTATCCTCTCCATAGTTTTCTGACCAGAATTGCAAGGGCAAAAATAGAACTTCTAGCTCTATTTATTTGTATCCTTTG
4001 AAATCAGAACTTATCCTTAGAACCAGTCAGTTAAATAATGCGGACTATGCCTATAATCCCAGCACTTTAGGAGGCTGAGG
4081 CAGGCAGATCACGAGGTCAGGAGTTCGAGGCCAGCCTGGCCAATGTGGTGAAACTCCGTCTCTACTAAAAATACAAAAAT
4161 TAGCCGGGCGTGGTGGTGCACGCCCATGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGAAGAATCGCTTGAACCCA
4241 GGAGGCGGAGGTTGCAGTGAGCCGAGATACTGCCACTACACTTCAGTCTGGGTGACAGAGCGAGACTCCATCTCAAAAAA
4321 ACAAAACAAAATAAAATAATAATGTGGGCTATTCAGAAGAAAAAGTCAGTGACAGAGAGACCAGAACCCATTGGATCAAG
4401 AGACCTGCAGGGATTATAACTCTTTACTCTGTGAGCAGCGGTGTTTCGTGCCCTGTCTCTGCCTGTGTGTTTTTACTAAG
4481 AATTCCAGAAATCCTGTAATTTGTAAATGGGAAACAGAGGAACCAGATTGTTTTATAGCTGATAAGAAACAGTCTGTTTT
4561 AGAAACATCTGTTTGGAAAGTATTACTCATGTATTCACAAAGTCATATTTATAACACTAGTCTTCTTTGACTGTATTCAA
4641 CAAAAGGCAGTTTCACCATTAATTTCATAGTAAGCTTTTTTAAAGGATTCTAGATCTAAATTGCCTAAGAATGTTAACCA
4721 CATTCTTGTTTTAAACTCTCTAATTTAATAAATGTAATTATTTTATAGTCTTTTATAGACTTACATTTTCTTCATACTAA
4801 AGGTAATGATAATATAGTCATTTGCCAGTACTTTAAGGTATTCAGGCATTTGAGACAAGAAAGCTGTCTTGTAGAATAGT
4881 CCAATTGCTTTCTTAAACAGTACTGGTTTCATTTAGACAGTTTCTAAGCCAGCAAAGGTGTCAATTTTAATGCCAACTTG
4961 ACAGTTTAACAGTTAGTGTTTGTAAGCAGTTTAGCCTGAATTATCCCATACTGCTGTAGAGGAGAATTGTTAGTAACATC
5041 AAAGGTCAGAATGCTTCAGGTGACTAATAAGAATGGAAAGAGACTGAGTAGGTTTTTTGTTTCTTTTCCCTGTCTTTGAG
5121 TAACTTTGAATGACTAAAATTAGTATGAAACTAGGTTTTGGACCCCCTTCTCACCTCACCCGGATGTAATGCCACCAATT
5201 TCAAATAACTAAAATGTGACCAATTACTTTGCTTCAAGTTCTATACAAATATCTCTGAAATCTGTAAGCCATATTTCAGC
5281 TATTCTGGTTTTTATAATACATTCTACCCTAAATTAACCAAAGGACTTTTTATTCAGTGTATTCCATGTTTCAGCATAAG
5361 GAAAGTTTGTGCCTGATATGGCAGGAGAAAGAACACTATGGTAATTTCATTGTTACTTCAGGTCTCTTTCAATCTGAAGA
5441 ACTGGGTTGTCTGGAGAATTGAACATAGCCAAGCAATATTATCAATTAGTAATGTCATCTTAAAAATGTTCACTTTTACT
5521 AAGTTTTATTCAGAGGATCTATGTATTATTAGAAAAATGAAGTATTTCTGACATGGAACAAAGAAAGTGGAAACTGGTAC
5601 TTAATGGGGGAAGCAAAATTAGCTGGGACTAAAACGGACATGTTTTGTTTTGTGAATTCTACCTAAATGTCTCTCTATCC
5681 ACAGAGAAACTAGTATTACTTGAAGATGTGAAAGTTCCTGTGGTAGCCATACCTTGAAGCACAGTGTTTGTACATAAGTA
5761 AATATCTTGATTCTAAATTAAATCCAGATTTAACTAATATATATTATTTTATATCTTTGTTGTATTAAAATGTTTAAAAA
5841 CACTAAAAATAAAACATTTGAAAGTTGGA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ccGUUUUUGGC--GUUAAUGAAAa 5'
            :||||  :|  |||||||||| 
Target 5' acTAAAATGTGACCAATTACTTTg 3'
 5208 - 5231 166.00 -8.00
2 
miRNA  3' ccGUUUUUGGCGUUAAUGAAAa 5'
            :|| || :|:|||||:||| 
Target 5' ttTAATAAATGTAATTATTTTa 3'
 4744 - 4765 156.00 -8.10
3 
miRNA  3' ccGUUUUUGGCGUUAAUGAAAa 5'
            ::| |||  : :||||||| 
Target 5' taTGATAACATTTGTTACTTTa 3'
 1619 - 1640 152.00 -5.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31536793 32 COSMIC
COSN31597078 75 COSMIC
COSN31560286 91 COSMIC
COSN20077113 92 COSMIC
COSN30140234 112 COSMIC
COSN20077112 113 COSMIC
COSM6862975 131 COSMIC
COSM1627638 142 COSMIC
COSM5572176 150 COSMIC
COSM9632635 159 COSMIC
COSM6567738 187 COSMIC
COSM6566213 197 COSMIC
COSM8756090 199 COSMIC
COSM6007629 210 COSMIC
COSM1187971 221 COSMIC
COSM5552095 233 COSMIC
COSM6265427 274 COSMIC
COSM6862985 317 COSMIC
COSM8658131 321 COSMIC
COSM5456040 339 COSMIC
COSM5721543 398 COSMIC
COSN30113411 471 COSMIC
COSN20077037 495 COSMIC
COSN1122569 503 COSMIC
COSN8189512 556 COSMIC
COSN25772103 760 COSMIC
COSN6530136 920 COSMIC
COSN22227933 977 COSMIC
COSN5883832 1014 COSMIC
COSN16421363 1081 COSMIC
COSN19303073 1451 COSMIC
COSN7068683 1485 COSMIC
COSN21087476 1683 COSMIC
COSN5821257 1731 COSMIC
COSN2500294 2055 COSMIC
COSN17038389 2534 COSMIC
COSN17038390 2537 COSMIC
COSN25199960 2538 COSMIC
COSN5883833 2592 COSMIC
COSN7068684 2781 COSMIC
COSN26764777 2837 COSMIC
COSN25254723 3361 COSMIC
COSN16154100 3866 COSMIC
COSN24696098 4272 COSMIC
COSN4716581 4558 COSMIC
COSN27782398 4605 COSMIC
COSN5883834 4693 COSMIC
COSN19266558 5402 COSMIC
COSN18929290 5485 COSMIC
COSN7064250 5636 COSMIC
COSN22080767 5701 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1004264942 1 dbSNP
rs1400579583 2 dbSNP
rs1414250070 6 dbSNP
rs1218166979 7 dbSNP
rs1350863450 9 dbSNP
rs752543508 19 dbSNP
rs761963951 20 dbSNP
rs1436666607 24 dbSNP
rs1294710007 26 dbSNP
rs1238773119 27 dbSNP
rs765448266 28 dbSNP
rs750462294 34 dbSNP
rs758429699 35 dbSNP
rs1342691137 40 dbSNP
rs1199592907 43 dbSNP
rs780223033 49 dbSNP
rs190376722 51 dbSNP
rs898555759 70 dbSNP
rs995380712 74 dbSNP
rs764018417 75 dbSNP
rs1028566389 79 dbSNP
rs755567873 85 dbSNP
rs1247534137 87 dbSNP
rs1402538946 88 dbSNP
rs1385936274 94 dbSNP
rs1158281520 113 dbSNP
rs1433821021 115 dbSNP
rs1201722790 117 dbSNP
rs370309382 120 dbSNP
rs924902301 122 dbSNP
rs1160291853 128 dbSNP
rs953982797 129 dbSNP
rs748531097 131 dbSNP
rs1057325774 135 dbSNP
rs769535089 136 dbSNP
rs777594447 172 dbSNP
rs749014390 181 dbSNP
rs770312937 184 dbSNP
rs1255330866 197 dbSNP
rs181574709 205 dbSNP
rs1325446466 218 dbSNP
rs773975650 229 dbSNP
rs948878872 235 dbSNP
rs1288703256 236 dbSNP
rs1203059463 242 dbSNP
rs759375701 247 dbSNP
rs1226846579 252 dbSNP
rs772059163 256 dbSNP
rs752275625 257 dbSNP
rs186592325 258 dbSNP
rs190853513 279 dbSNP
rs1325485075 281 dbSNP
rs1211647583 291 dbSNP
rs1265899627 292 dbSNP
rs1275396902 294 dbSNP
rs1451493347 304 dbSNP
rs1234289517 306 dbSNP
rs386745416 306 dbSNP
rs1044500019 319 dbSNP
rs1292041704 321 dbSNP
rs1432977987 325 dbSNP
rs1414709366 328 dbSNP
rs76807216 331 dbSNP
rs757876410 333 dbSNP
rs79190971 334 dbSNP
rs1156584833 340 dbSNP
rs143264704 363 dbSNP
rs1457978950 364 dbSNP
rs1301892103 377 dbSNP
rs1164436970 390 dbSNP
rs1388530385 392 dbSNP
rs3206793 394 dbSNP
rs1325826383 410 dbSNP
rs544463817 421 dbSNP
rs1404297619 427 dbSNP
rs1224937415 435 dbSNP
rs899244448 436 dbSNP
rs994872443 438 dbSNP
rs1308538496 439 dbSNP
rs763785312 440 dbSNP
rs760494235 445 dbSNP
rs1212604665 447 dbSNP
rs1270896030 454 dbSNP
rs1190440435 455 dbSNP
rs1469479523 456 dbSNP
rs1253255922 462 dbSNP
rs765393449 472 dbSNP
rs1009247375 477 dbSNP
rs878893267 479 dbSNP
rs1288318279 480 dbSNP
rs556842500 481 dbSNP
rs995986009 483 dbSNP
rs1269597903 490 dbSNP
rs146376147 492 dbSNP
rs990370468 503 dbSNP
rs756534961 504 dbSNP
rs1439850864 509 dbSNP
rs977758280 511 dbSNP
rs1392081687 517 dbSNP
rs1330662012 519 dbSNP
rs948978278 531 dbSNP
rs542251008 532 dbSNP
rs981628887 539 dbSNP
rs1414634737 540 dbSNP
rs928656488 546 dbSNP
rs940058442 547 dbSNP
rs1192669631 548 dbSNP
rs1395305259 548 dbSNP
rs1468303701 549 dbSNP
rs1472753178 553 dbSNP
rs1157920110 558 dbSNP
rs917467476 570 dbSNP
rs780218225 571 dbSNP
rs749650310 572 dbSNP
rs1405190803 579 dbSNP
rs1415643458 585 dbSNP
rs1044574463 587 dbSNP
rs920704609 589 dbSNP
rs560480691 603 dbSNP
rs1233780056 608 dbSNP
rs931386155 619 dbSNP
rs1358447949 621 dbSNP
rs1281003773 649 dbSNP
rs1412838169 653 dbSNP
rs868425213 660 dbSNP
rs930695270 670 dbSNP
rs1047818884 678 dbSNP
rs1326850195 678 dbSNP
rs7893833 680 dbSNP
rs1008865403 691 dbSNP
rs551525987 692 dbSNP
rs889589866 703 dbSNP
rs1008161457 711 dbSNP
rs1019520370 713 dbSNP
rs996000650 718 dbSNP
rs902414331 731 dbSNP
rs999231046 740 dbSNP
rs1032417613 751 dbSNP
rs1232775604 758 dbSNP
rs1203694834 765 dbSNP
rs957853868 769 dbSNP
rs1281077736 773 dbSNP
rs990939056 774 dbSNP
rs546292545 783 dbSNP
rs1220956106 787 dbSNP
rs1279974170 793 dbSNP
rs1309499263 797 dbSNP
rs1224125550 798 dbSNP
rs1372400782 801 dbSNP
rs564290863 806 dbSNP
rs773717207 814 dbSNP
rs1416495404 815 dbSNP
rs114996657 818 dbSNP
rs1209350381 819 dbSNP
rs182329875 827 dbSNP
rs1483557362 838 dbSNP
rs1180510868 850 dbSNP
rs568391911 850 dbSNP
rs779531879 860 dbSNP
rs1476433907 866 dbSNP
rs1258842861 878 dbSNP
rs1324510464 903 dbSNP
rs529132929 903 dbSNP
rs1333018356 904 dbSNP
rs940258945 919 dbSNP
rs547371224 924 dbSNP
rs917522650 928 dbSNP
rs1316583139 931 dbSNP
rs113287854 937 dbSNP
rs539160461 942 dbSNP
rs1335374269 946 dbSNP
rs1292664090 952 dbSNP
rs931421903 956 dbSNP
rs1393948601 986 dbSNP
rs1049813321 991 dbSNP
rs747130812 992 dbSNP
rs1429544260 995 dbSNP
rs1386000890 1000 dbSNP
rs930770228 1001 dbSNP
rs1047851008 1002 dbSNP
rs1463399555 1002 dbSNP
rs1164882116 1009 dbSNP
rs1422111189 1011 dbSNP
rs1263889498 1024 dbSNP
rs1187221728 1029 dbSNP
rs754846200 1031 dbSNP
rs780831363 1032 dbSNP
rs1370965788 1033 dbSNP
rs1215326029 1037 dbSNP
rs557463790 1041 dbSNP
rs1272445842 1058 dbSNP
rs902464238 1066 dbSNP
rs1309219340 1069 dbSNP
rs1295592128 1080 dbSNP
rs999849178 1082 dbSNP
rs144511989 1087 dbSNP
rs1327582446 1095 dbSNP
rs1443528527 1149 dbSNP
rs578004119 1152 dbSNP
rs776351071 1153 dbSNP
rs1043602406 1154 dbSNP
rs1053461114 1173 dbSNP
rs893431512 1175 dbSNP
rs1171160030 1181 dbSNP
rs999282954 1194 dbSNP
rs1370299515 1201 dbSNP
rs151108939 1212 dbSNP
rs1195782286 1225 dbSNP
rs1277342609 1234 dbSNP
rs1469089630 1236 dbSNP
rs199688338 1240 dbSNP
rs1195532428 1249 dbSNP
rs575088412 1255 dbSNP
rs1271306432 1257 dbSNP
rs1481540800 1261 dbSNP
rs1453035523 1265 dbSNP
rs970436037 1268 dbSNP
rs896235668 1270 dbSNP
rs748144035 1275 dbSNP
rs1251886454 1289 dbSNP
rs569880538 1295 dbSNP
rs185944286 1307 dbSNP
rs191270374 1308 dbSNP
rs755976175 1315 dbSNP
rs1369834232 1318 dbSNP
rs1300944302 1333 dbSNP
rs952198892 1334 dbSNP
rs1399246962 1335 dbSNP
rs777276343 1336 dbSNP
rs748742961 1346 dbSNP
rs767876746 1355 dbSNP
rs1342792403 1364 dbSNP
rs1368728133 1367 dbSNP
rs1429158559 1367 dbSNP
rs1175633396 1384 dbSNP
rs572438029 1390 dbSNP
rs1392611118 1393 dbSNP
rs1377297714 1396 dbSNP
rs1196461690 1398 dbSNP
rs762473432 1401 dbSNP
rs976516293 1403 dbSNP
rs1195212014 1404 dbSNP
rs952799859 1407 dbSNP
rs1393871805 1410 dbSNP
rs763554861 1418 dbSNP
rs1438716441 1429 dbSNP
rs1346634337 1447 dbSNP
rs1300462674 1448 dbSNP
rs1231482599 1450 dbSNP
rs1366633607 1453 dbSNP
rs1227331051 1454 dbSNP
rs1268825306 1458 dbSNP
rs921967292 1461 dbSNP
rs931957752 1473 dbSNP
rs1409706108 1475 dbSNP
rs1349180097 1484 dbSNP
rs546206722 1485 dbSNP
rs1401762006 1486 dbSNP
rs1358878377 1489 dbSNP
rs1210083658 1491 dbSNP
rs1272105318 1496 dbSNP
rs1364113026 1497 dbSNP
rs565741437 1499 dbSNP
rs1471532605 1500 dbSNP
rs1259550470 1502 dbSNP
rs1188035057 1511 dbSNP
rs1209997823 1512 dbSNP
rs911339950 1513 dbSNP
rs1253612642 1514 dbSNP
rs903774702 1517 dbSNP
rs1350981615 1519 dbSNP
rs1261610266 1522 dbSNP
rs770517327 1529 dbSNP
rs1248096978 1538 dbSNP
rs1427918333 1541 dbSNP
rs2804528 1564 dbSNP
rs1339998728 1567 dbSNP
rs375952553 1584 dbSNP
rs1332300138 1590 dbSNP
rs543644753 1595 dbSNP
rs1384099111 1596 dbSNP
rs1385952033 1600 dbSNP
rs1158073765 1607 dbSNP
rs1455500720 1622 dbSNP
rs1370027195 1627 dbSNP
rs140945048 1642 dbSNP
rs1013350507 1651 dbSNP
rs1472436997 1654 dbSNP
rs1235199136 1672 dbSNP
rs1194697898 1679 dbSNP
rs529206510 1688 dbSNP
rs923733423 1689 dbSNP
rs1023782037 1691 dbSNP
rs1208490211 1693 dbSNP
rs183380620 1706 dbSNP
rs1417347133 1714 dbSNP
rs547251553 1737 dbSNP
rs1322721782 1743 dbSNP
rs1027941851 1755 dbSNP
rs149781751 1757 dbSNP
rs1229727300 1759 dbSNP
rs1011895761 1769 dbSNP
rs1327237486 1771 dbSNP
rs1044702889 1779 dbSNP
rs1382201690 1785 dbSNP
rs1316791841 1788 dbSNP
rs1326365136 1790 dbSNP
rs532792186 1808 dbSNP
rs1404627039 1809 dbSNP
rs984048313 1825 dbSNP
rs1169130281 1827 dbSNP
rs1475493308 1828 dbSNP
rs1003206688 1833 dbSNP
rs550957617 1840 dbSNP
rs1389135536 1841 dbSNP
rs112758628 1855 dbSNP
rs966579307 1858 dbSNP
rs373669683 1859 dbSNP
rs1222779993 1868 dbSNP
rs961830307 1870 dbSNP
rs1451482082 1879 dbSNP
rs1288423605 1883 dbSNP
rs569452510 1885 dbSNP
rs542765981 1890 dbSNP
rs1296989467 1900 dbSNP
rs1027667587 1903 dbSNP
rs555115039 1905 dbSNP
rs932020010 1908 dbSNP
rs1268260813 1909 dbSNP
rs985465381 1923 dbSNP
rs755371794 1932 dbSNP
rs1203343944 1933 dbSNP
rs573740716 1941 dbSNP
rs1348042595 1945 dbSNP
rs1330858626 1949 dbSNP
rs1410017605 1953 dbSNP
rs979401211 1962 dbSNP
rs536707466 1970 dbSNP
rs550353716 1975 dbSNP
rs925228643 1979 dbSNP
rs1395323309 1980 dbSNP
rs1415382596 1988 dbSNP
rs779581262 1995 dbSNP
rs1161618256 2005 dbSNP
rs1052753785 2013 dbSNP
rs1184669629 2019 dbSNP
rs1483684151 2022 dbSNP
rs145699459 2023 dbSNP
rs1157346860 2024 dbSNP
rs1404909270 2028 dbSNP
rs1044828907 2039 dbSNP
rs923822854 2039 dbSNP
rs1218393791 2065 dbSNP
rs935181472 2074 dbSNP
rs536163025 2075 dbSNP
rs1053598488 2076 dbSNP
rs1312723979 2099 dbSNP
rs1353924502 2104 dbSNP
rs915152663 2115 dbSNP
rs1411334663 2125 dbSNP
rs1288539104 2136 dbSNP
rs947935691 2142 dbSNP
rs1436108025 2149 dbSNP
rs1048072114 2158 dbSNP
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Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796037. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796037
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000372687.4 | 3UTR | UUAAGUAAUUUCACAUCUAUGAUAACAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
184 hsa-miR-548am-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057132 DDIT4 DNA damage inducible transcript 4 2 4
MIRT063379 ETNK1 ethanolamine kinase 1 2 2
MIRT072501 RAB8B RAB8B, member RAS oncogene family 2 2
MIRT082193 ACTN4 actinin alpha 4 2 6
MIRT083043 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT085196 SLC5A3 solute carrier family 5 member 3 2 4
MIRT088913 FOXN2 forkhead box N2 2 4
MIRT089506 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 6
MIRT092047 ABHD5 abhydrolase domain containing 5 2 2
MIRT094692 FEM1C fem-1 homolog C 2 2
MIRT095403 UBE2D2 ubiquitin conjugating enzyme E2 D2 2 2
MIRT096509 BRIX1 BRX1, biogenesis of ribosomes 2 2
MIRT101303 FAM135A family with sequence similarity 135 member A 2 2
MIRT103366 CBX3 chromobox 3 2 2
MIRT103883 FOXK1 forkhead box K1 2 2
MIRT104343 CLDN12 claudin 12 2 2
MIRT104508 PEG10 paternally expressed 10 2 6
MIRT111808 MPZL1 myelin protein zero like 1 2 2
MIRT177246 BMI1 BMI1 proto-oncogene, polycomb ring finger 2 2
MIRT177281 COMMD3-BMI1 COMMD3-BMI1 readthrough 2 2
MIRT177633 UBE2D1 ubiquitin conjugating enzyme E2 D1 2 6
MIRT178049 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT179109 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 2 6
MIRT179594 CAPZA1 capping actin protein of muscle Z-line alpha subunit 1 2 6
MIRT195307 LEPROT leptin receptor overlapping transcript 2 2
MIRT203152 BACH1 BTB domain and CNC homolog 1 2 2
MIRT208437 ZBTB38 zinc finger and BTB domain containing 38 2 2
MIRT214585 SMAD5 SMAD family member 5 2 4
MIRT216112 IL6ST interleukin 6 signal transducer 2 2
MIRT216363 CCNB1 cyclin B1 2 4
MIRT220059 MDFIC MyoD family inhibitor domain containing 2 2
MIRT226737 ANP32B acidic nuclear phosphoprotein 32 family member B 2 4
MIRT227706 TBC1D13 TBC1 domain family member 13 2 2
MIRT230079 SH3BGRL SH3 domain binding glutamate rich protein like 2 2
MIRT248644 HMGN2 high mobility group nucleosomal binding domain 2 2 4
MIRT254799 XRCC6 X-ray repair cross complementing 6 2 6
MIRT264388 YAP1 Yes associated protein 1 2 2
MIRT266982 LRRC55 leucine rich repeat containing 55 2 4
MIRT273957 SPRYD4 SPRY domain containing 4 2 2
MIRT281809 MAP2K1 mitogen-activated protein kinase kinase 1 2 2
MIRT293262 DR1 down-regulator of transcription 1 2 2
MIRT297105 RGPD4 RANBP2-like and GRIP domain containing 4 2 2
MIRT308178 PDE12 phosphodiesterase 12 2 2
MIRT309022 USP53 ubiquitin specific peptidase 53 2 2
MIRT311477 PRRC1 proline rich coiled-coil 1 2 2
MIRT312595 G3BP1 G3BP stress granule assembly factor 1 2 4
MIRT328137 ZNF711 zinc finger protein 711 2 2
MIRT329321 FAM53C family with sequence similarity 53 member C 2 2
MIRT334649 NEK7 NIMA related kinase 7 2 2
MIRT340680 THRAP3 thyroid hormone receptor associated protein 3 2 2
MIRT378865 ITGB8 integrin subunit beta 8 2 2
MIRT395798 SPCS3 signal peptidase complex subunit 3 2 2
MIRT405648 WBP4 WW domain binding protein 4 2 4
MIRT408294 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT442112 ZNRF2 zinc and ring finger 2 2 8
MIRT442855 GTF2H5 general transcription factor IIH subunit 5 2 2
MIRT443131 VLDLR very low density lipoprotein receptor 2 2
MIRT443162 ZDHHC21 zinc finger DHHC-type containing 21 2 2
MIRT443313 PRPS1L1 phosphoribosyl pyrophosphate synthetase 1-like 1 2 2
MIRT445095 ZNF207 zinc finger protein 207 2 2
MIRT445399 PTCHD1 patched domain containing 1 2 4
MIRT447085 MCC mutated in colorectal cancers 2 2
MIRT447315 ZNF562 zinc finger protein 562 2 2
MIRT447528 MRPS5 mitochondrial ribosomal protein S5 2 2
MIRT449526 TM6SF1 transmembrane 6 superfamily member 1 2 2
MIRT449917 C11orf34 placenta expressed transcript 1 1 2
MIRT450566 SHFM1 SEM1, 26S proteasome complex subunit 2 2
MIRT450734 PVRL3 nectin cell adhesion molecule 3 2 2
MIRT454938 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 12
MIRT455907 KIF2C kinesin family member 2C 2 2
MIRT463747 YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon 2 8
MIRT471197 PHB2 prohibitin 2 2 2
MIRT472779 MTMR6 myotubularin related protein 6 2 8
MIRT474472 KLHL11 kelch like family member 11 2 8
MIRT476000 GTPBP2 GTP binding protein 2 2 2
MIRT482291 AGO2 argonaute 2, RISC catalytic component 2 4
MIRT485873 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT486207 ERH ERH, mRNA splicing and mitosis factor 2 4
MIRT488624 FAM3C family with sequence similarity 3 member C 2 6
MIRT489999 DDB1 damage specific DNA binding protein 1 2 2
MIRT493491 IPMK inositol polyphosphate multikinase 2 2
MIRT494295 CEP120 centrosomal protein 120 2 2
MIRT498007 ZBTB20 zinc finger and BTB domain containing 20 2 2
MIRT498488 PTBP2 polypyrimidine tract binding protein 2 2 10
MIRT498575 TMEM30B transmembrane protein 30B 2 2
MIRT499882 SVOP SV2 related protein 2 10
MIRT500235 INHBA inhibin beta A subunit 2 10
MIRT500709 TRIM37 tripartite motif containing 37 2 2
MIRT501003 SPPL2A signal peptide peptidase like 2A 2 4
MIRT501038 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502751 CLIP1 CAP-Gly domain containing linker protein 1 2 8
MIRT502813 CELSR3 cadherin EGF LAG seven-pass G-type receptor 3 2 6
MIRT502903 CDK4 cyclin dependent kinase 4 2 8
MIRT503498 ZNF154 zinc finger protein 154 2 6
MIRT503732 GRM5 glutamate metabotropic receptor 5 2 2
MIRT505152 YOD1 YOD1 deubiquitinase 2 2
MIRT505817 RSBN1 round spermatid basic protein 1 2 8
MIRT505856 POLR1B RNA polymerase I subunit B 2 4
MIRT509299 NPM3 nucleophosmin/nucleoplasmin 3 2 6
MIRT516844 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT520534 TRA2B transformer 2 beta homolog 2 2
MIRT520738 TM9SF3 transmembrane 9 superfamily member 3 2 6
MIRT525418 SHISA9 shisa family member 9 2 4
MIRT525882 ARL13B ADP ribosylation factor like GTPase 13B 2 2
MIRT526028 RBM4B RNA binding motif protein 4B 2 2
MIRT526099 TMEM41B transmembrane protein 41B 2 2
MIRT527946 FRY FRY microtubule binding protein 2 2
MIRT528833 RAB32 RAB32, member RAS oncogene family 2 2
MIRT531077 SLC9A4 solute carrier family 9 member A4 2 4
MIRT535510 PANX1 pannexin 1 2 2
MIRT536697 IKZF5 IKAROS family zinc finger 5 2 2
MIRT536850 HMBOX1 homeobox containing 1 2 2
MIRT537217 GDE1 glycerophosphodiester phosphodiesterase 1 2 4
MIRT537849 EFNA5 ephrin A5 2 2
MIRT538360 CSE1L chromosome segregation 1 like 2 4
MIRT541257 GPC4 glypican 4 2 2
MIRT543250 PEX7 peroxisomal biogenesis factor 7 2 2
MIRT543465 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT543726 XKR9 XK related 9 2 2
MIRT543922 ESYT1 extended synaptotagmin 1 2 2
MIRT544014 KLRC3 killer cell lectin like receptor C3 2 2
MIRT544085 METTL8 methyltransferase like 8 2 2
MIRT544202 ANGPTL3 angiopoietin like 3 2 2
MIRT544823 ACSM2B acyl-CoA synthetase medium chain family member 2B 2 2
MIRT545061 PRELID1 PRELI domain containing 1 2 2
MIRT545229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT545304 SPC25 SPC25, NDC80 kinetochore complex component 2 2
MIRT545565 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT546512 SIK1 salt inducible kinase 1 2 2
MIRT546929 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 2
MIRT547690 KPNA1 karyopherin subunit alpha 1 2 4
MIRT547783 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT548702 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 2
MIRT548916 CHEK2 checkpoint kinase 2 2 4
MIRT549972 RPL7L1 ribosomal protein L7 like 1 2 4
MIRT550504 TMEM241 transmembrane protein 241 2 2
MIRT551064 MKLN1 muskelin 1 2 2
MIRT552826 XIAP X-linked inhibitor of apoptosis 2 4
MIRT553160 UBE2H ubiquitin conjugating enzyme E2 H 2 2
MIRT553845 SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein 2 2
MIRT554273 SIX4 SIX homeobox 4 2 2
MIRT555796 PCMTD1 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 2 2
MIRT556333 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT556514 LIPA lipase A, lysosomal acid type 2 2
MIRT556708 KLHL28 kelch like family member 28 2 2
MIRT556767 KLF7 Kruppel like factor 7 2 2
MIRT557005 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557161 HOXA13 homeobox A13 2 2
MIRT557502 GPR27 G protein-coupled receptor 27 2 4
MIRT558117 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 2 2
MIRT559359 ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) 2 2
MIRT560350 ZWINT ZW10 interacting kinetochore protein 2 2
MIRT561314 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT561898 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 2
MIRT561942 MFSD9 major facilitator superfamily domain containing 9 2 2
MIRT562950 TNIP2 TNFAIP3 interacting protein 2 2 2
MIRT563306 BBS10 Bardet-Biedl syndrome 10 2 2
MIRT563420 KIF3A kinesin family member 3A 2 2
MIRT563577 KIAA1586 KIAA1586 2 2
MIRT565891 NHS NHS actin remodeling regulator 2 2
MIRT566096 RCC2 regulator of chromosome condensation 2 2 2
MIRT566411 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT567274 HSP90AA1 heat shock protein 90 alpha family class A member 1 2 2
MIRT571483 CCDC80 coiled-coil domain containing 80 2 2
MIRT572954 VDAC2 voltage dependent anion channel 2 2 2
MIRT573643 ZNF724P zinc finger protein 724 2 2
MIRT573732 KHSRP KH-type splicing regulatory protein 2 2
MIRT609103 SMIM15 small integral membrane protein 15 2 6
MIRT617951 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT618394 PRKG2 protein kinase, cGMP-dependent, type II 2 2
MIRT619642 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 2 2
MIRT623470 KDM5A lysine demethylase 5A 2 2
MIRT629160 CTCFL CCCTC-binding factor like 2 2
MIRT638536 LYRM2 LYR motif containing 2 2 2
MIRT649498 CLDN16 claudin 16 2 2
MIRT683163 MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 2 2
MIRT691675 SLC43A3 solute carrier family 43 member 3 2 2
MIRT693216 MKI67 marker of proliferation Ki-67 2 2
MIRT695349 AQP3 aquaporin 3 (Gill blood group) 2 2
MIRT701038 PCGF5 polycomb group ring finger 5 2 2
MIRT708768 RYBP RING1 and YY1 binding protein 2 2
MIRT717573 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT719301 SETD7 SET domain containing lysine methyltransferase 7 2 2
MIRT725187 SDAD1 SDA1 domain containing 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-548am-5p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549, HCC827)
hsa-miR-548am-5p Gefitinib 123631 NSC715055 approved resistant High Non-Small Cell Lung Cancer cell line (A549, HCC827)
hsa-miR-548am-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-548am-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)

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