miRTarBase - #MIRT186147


—
pre-miRNA Information
pre-miRNA hsa-mir-4419b   
Genomic Coordinates chr12: 128244506 - 128244573
Description Homo sapiens miR-4419b stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4419b
Sequence 42| GAGGCUGAAGGAAGAUGG |59
Evidence Experimental
Experiments Illumina
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ALG10B   
Synonyms ALG10, KCR1
Description ALG10B, alpha-1,2-glucosyltransferase
Transcript NM_001013620   
Expression
Putative miRNA Targets on ALG10B
3'UTR of ALG10B
(miRNA target sites are highlighted)		 
>ALG10B|NM_001013620|3'UTR
   1 TATCAGTGATATTTTGAACTGTAAAAATGGACTTAATAATTAGACCATTTCTACAAAGAACAACTGAATAGGTGGAAAAC
  81 ATGGAATTTCTTTTAGGTGCAGTGGTGGTCCTCAAATTACATTAGTTTTTTTAATATATATTTTAAACATATGTAAGAAA
 161 TTAAGTGGCAAAGAACTGGGAAAGCTTAAGACCTGCTTCAAAAGCCTGAATAATGGGAAAATAAAATTGTTTTCAGATAT
 241 CTCATATCGCTCTCGTAATGTTGGCCCCTCACAAAGCTTGGGAATGTTTTGTATGTATAAGTTTATTAAAACTGGGTATG
 321 CTTCATATTACTAGAACTAATTTATTCTCTTCAGAGAGAACTATTAGGTTAGTGCAAAAGTAATTGTGGTTTTTGCCATT
 401 GAAAGTAATGGCAAAACCACAATTACTTTTGTACCAACCTAATAACAATGTGTTAGCAAATATTTACAAATGGTCAGGTG
 481 ATATTCTTGACTGAAAAGTTCCTTAACATTTCAGTAAATATAATTTTAATTCTAAGTCAAAATAGAAATGCATAGATAGT
 561 AAATGATAAAGTAGAGACTCATATATGTCTGTCTAGGCATCAAATTGTTGGTTATTGTTTACAATCCAGAAATGATGAAG
 641 CTCTTTCACTAATTCCTAATATGAAATGTATGATGGCCAAAGACAAATTGTGTTGATTATAATCCTTTAAAAGGGGGATT
 721 TCCTTTATGAAATACATATTGTATTAGCTTCCCAGGGCTGCCATAACAAATGACCACAAACTTGGGTGCTTACAACAATT
 801 TTCCTCACAGTCTGGAGGCCAGAAGTCTAAAATCAAAGTGTCAGCAGAGTTGGTTCCTTCTGGAGGCTCTAAGGAAGAAT
 881 CCATTCTATGTCTGTTTCCTAATATCTTGTGGCTGTCTGCAATTCTTGGAGTTCTTTGGCTTATGGGCATATCTTGTCTA
 961 AGTATTGCAGACAGCAATCTTCACTCCAGTCTCTGCCTCTGCGTTCACACGGCCTTTCCCTCTGTCTTTTCATTACCTTT
1041 TAAGGACAGTGTCTTTGAATGTAGGGCCCACCCTGATCTAGGGTGATTGTGTCTGGAGACCCTTAATTATGTTTACAAAG
1121 ACCCATGTTCCAAGTAAGTTTGTATTCACATGTTCTGAGTAGACATTGTCTCTTCATGGGATACTTTTCAGTCCATGACA
1201 GTTACTAAAGGACATTTTAGGATAATCCTCATATGATTGTTAGGAGACTACCTTTAAAAATTTTTTATTATATATCAAAT
1281 TATAGTTGTATATACTTATGAGGTACGAAGTGGCATTATGATTTTTGAATATAATGTGGGATGATTAAATAAAGCTAATC
1361 TATCCATCACCTCAAATATTTGACATATTTTGTGATGAAAACATTTGAAATGTACTCTCAACAGTATTGAAATGTACATA
1441 CAGTGCTTAATTATTAGCTGTATTCACCATGTTGTGTAATAGATCTAAAAAAAGTCAAACATATTCCTTCTATCTAATTG
1521 AGGCTTTGTATCTTTTGATTGTCATCTCCCTATTCCCACATCCCCGGCCTCTAGCAACCATCATTCTTCTCTCTACTTCT
1601 GTGAGTTTAATTGTTTTAGATTACACAAATAAGTGAGATCATGTGGTATTTGTCTTTCTGTGCTTGGCTTATTTCACTTA
1681 CCATAATGTCCTCCACGATCATCCATATTGTTGCAAATGACACAATTTCTTCCTTTTTAAAGGCTGAATAGTATTTTTTT
1761 GTATATATATGCCACATTTTCTTTATCCATTCATCCATGGATGGACACTTAGGTTGATCGAATCACTTGGTTATTGTGAC
1841 TTGTCTGCAATGAACATAGAGTGCAGACTTCTCTTTGACATACGGATTTCAAATCTTCTGGATAAATAGCCAGAAGTGGG
1921 ATTGTTGGATCAGGAGATAATATCTTAGCTGATACCTTTTAAATAACTCTCAGTATCTTTACTGAGAGGTTAAAAAATAA
2001 GTGACTTCTTAGGTAATATAAAGCTAAAGGTGACTAGTGTTTGATTCCATTATCTATTAAAAAAAGTCAGAATTGAAAGA
2081 AAGTTGAGAAATCCTTTGGTCTGACTTTGTAGATTAGGGAACAACTGCTGGGGTAGGATTATTTTGTGTTACTTTTTGAA
2161 TTTTGTGTTTATTATTTTGAGTGTATTTTTTGGGTTGTCATTCCATTACAGGAAAGTATTATTTGGGCATGTTAACTTTG
2241 ACATGTAAACTTAGAATTGTGAATAGAACTCATCTTTTAACATAATTTTATGTTTCTAAACTTTAAAAGTAGCTATAAGT
2321 GAACAAATTACTTTCCCCTCAATGTCAAATTTTGCTTCTCTGAGTTTTAAGTGATGAGTCTACATTTACAAATATAAAAT
2401 TGTGTGCAGGTGAAAATTACAAGTATAATTTGAGTAATAAATGCAGGCCATTTTTTGGTTGTACTCTAGTACTCAGAAAA
2481 TAGATCGGCATTAGTTATAACAGTGATTGTAGAAAAACGTGTTTTACCCAGACTTCTTAAAAATTAGATGAGAGAGGACA
2561 CTCAAAGAAATTATACTTTTGTCATTAATTTACTATAGTGGAGAACTAAATCTGGGAAGTCAAAATTGAAAAAAGAATGT
2641 GTAATTTAGGGAAAGTAACTTTTTGTCTGATAATATTAATGCAAGGATTTTGTATTTAGGAATACTTCTGAGAGGAGAAG
2721 CTTCCACTCTGATCTAGTCTGGCAAAATTGAGGAAAATATTCTACCCTGTAATTAAAGAAGACTGCTCTTTGGAGGGATC
2801 ACTGTTCTATATCTTTTTTTGTTTGTTTTTGTCTTTGAGGAGAAGTCTCGCTCTTGTCCCCCAGGCTGGAATGCAATGGC
2881 GCGATCTTGGCTCACTGAAACCTCCACCTCCTGGGTTCAAGCAGTTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTAT
2961 AGGCGCCCACCACCAAGCCTGGCTAATTTTTTCTATTTTTAGTAGAGCCGGGGTTTCACCGTGTTAGCCAGGCTGGTCTC
3041 GAACTCCTGACCTCAGGTAATCCACCTGCCTCGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCCAGCTC
3121 TTCTAGTTCATTTTTAAGTGTTGAGTCCCTGCTGTTTAAGAGATGTTTTGGTGAAAATCTACATTCAGAGAGAAACAGGT
3201 TAATCTTCCACATTTTTTATAAAATACATAAAATATAGTACTTGGCATTTTAAGAAAAGAATGCCATGTATTAAAAGGTG
3281 CTATTTTCAACTATTTATTATTTTAAAACAGGAATGCTTATCAATACTTTCGAATTTAAGATAAATGTCTTCGTTAAATT
3361 TTCTAGGCAGTTCAAAGATGGCCATTTGCTGGTGAATTTTCCAAAATAGATAACAGATAAAATGATTATGTAAGAACTTG
3441 GCACAACAGATCATTTTGCCTTTAGTCGTTCAAGAAATGATACTAAACTCAAAGTCATTCACTTGAAACAACTGAGAAGA
3521 CCATTCTTAGGTGTTTAGATCCTTGCTTTTAGAAACATTCTTAGTTATATTTGTGTTTTCAAAAGTTATTGAGTAGATAG
3601 ATATTTTTTCATGAATTTTTAAACATTAGACTTAGCTGAATTGATTAAAATTAGGTGATTATGAAAAAAATATTGCCCTG
3681 CTCGAGGGCATCTGGAGCCCTACAGTTACCATTACTAAAGTCTGTGAGTATGTCTATTTTGAAAAGTGTCATAAAAATAT
3761 CTAGTCCATAAATCATTATAGGTTCAGTAATACATCATTTTGAACTGATTCTATCTTCTGTGAAATTCTAGAGATATGTT
3841 ATCTTTAGGTAGCATGAGTAAGATTCAGGTATGCTGTGAATTTTGTTAACGTTTATGTTTTCCATTAATGGATAGTCAGG
3921 AATCTTTTGAACTGCGTCTATGTATTTAAATGATTTGGAAAGATAGCATCTCTCAGTTTAAACTTAGCATCTCATTTTGG
4001 CAAGATAAATTATTTTAGCTGTCTGGCCTTTTCTTTGTCTTCTTAGAGTTATTTCTGAAATGTGCATAGCCAGTCATAAA
4081 ATAACTTGTGTAAATAGCCTAATGTAATTTATTTCTAATAAATACGTAGCTTAATGAAATGTATTTCTAGTTTGAACTTA
4161 ATTGCCACTTGGCTTGATATTATTTTCCTTAGAATTGTTGGAAGAGAGGAGAGAGGAAGGGATCTACCATTTTTATTTAT
4241 ACCACCTAAATAGTGGACTGTTATTTTGGACTCACTTTTAAATAAAATATTTATTCACATGAAGAAATAAATTTTGTGTT
4321 TATTAGGTTAGCAAGCGTTTATTATCTTTGAAGTAATTGGAATTTCATTAAAAAGTGAAGCAAGTAAGAATTGTGATATA
4401 AATTTGAAAATTTTTAAATGGAAATTGAAATATGACTTAGGAACTGTGGGCTTGTAGAAAAAAACATTTAACATGGGAGT
4481 TAAGATTTTTATATTTGGTTGTGGCTCTGGGATCAATAAGGCAAGTGGTTTAGTCTTTAGTCCTCATTTCAAATGAGAAT
4561 AGTATTTGTCCTAACTCTAGTCAGTGTCTGATTGGTATGTGTATAACCTTATTTTAAAAAGGATTCATTCCTGCCATATA
4641 CTCATAATATTTATAAGTATGTCATATGATAAATATTGAGTAAATATATACTGAATGAAGTTTTTAGTATAGAGTGAAGT
4721 GAATAGAAAAAACATCCTACATAACCGTGGCTAATTTTAGGAAGTAAATCATGTTTCATAATAAGAGTCATCCTAAACAT
4801 TTTTCTGTGTAATTTTCTGACCCAGTGTTAACAATTTTTATTTGCCTTAGTGCAAGCTTGTTCAACCCACAGGCCACATG
4881 CAGCCCAGGATGGCTTTGAATGCGGCCCCAACACAAATTTTGTAAGCTTTCTTAAAACATGATGAGATATTTTGTGATTT
4961 TATTTTATTTTATTTTATTTATTATTTTATTTTATTTTATTTTATTTTTTAGCTCATCAGCTATCATTAGTGTTCGTGTA
5041 TTTTATGTGTGGCCCAAGATGGTTCTTCCAGTGTGGCCCAGGGAAGCCAAAAGATTGGAGACCCCTGCTAGCATTTAATG
5121 CTTATACATGTATTTACTTGTAAACATGTTGTTTCTTTGATAGGATATGATTTCAACATAATTACTGTTTATTTAAAATA
5201 AGAAAAACAAATAACTTTCAACCATTAAAAGGTTATAACACTTTAAAGGAAAGTTTCTTATTAAAGAAACTTTATACCCT
5281 ATTAAGGGTATAATTTCAAAATAATTGCTTTTTATTTAAAATAAGAAAATATTCTTATTTCTATTTAAAATAAGAAAAAT
5361 CAGTAACCTTCAACGAATAACAGGTTAAAGAATTTAAAGGTAAAAGACATTTCAACTAATTACAAATACTTTGTTTTTTT
5441 TAGTTGGGCTACATTTTACCACTCTAGGAATAGCTGTTAATTATTTTTTATATAGGGCATTTTTATGTATTTAATGTTGA
5521 CAACTGACGTTTCCAATATACAAAAACTTGTGTAACTGAGAAAATTATAATAAAAATAGAGATTGAGGACATATTTTTAA
5601 CATATATCCATGAGTCAACACTAATATTTAATATTTGAGATTTGAAAAATTATTTCTAGGGTAAGAAATTCTGTCACAAT
5681 ATAATATCTCTATATTGTGCTTTTTTAAGAGATAAATTTTTGATGAATTTAATGTTAATTAAATTTTATCTCAGCCTATC
5761 ACCATCAGACCAAAAGACAATACAGTATTTTTCTAACAAGGAAAAGAAAATACATATATATATATTTATATATACAAATA
5841 TATACGTATTTATATATACAAATTTGTATATATGTAATGTATGTGTGTGTGTATACATATAATTTCTCCTTTTTTTTTTT
5921 TGTAAGAATTGAGACAGGGTGTCACTATGTTGTGTGGGCTGGTCTCAAAACACCTGCCTCAAGTGATCCTCCCACCTTGG
6001 CCTCCCAAAGTGCTAGGATTTACAATGAGCCACTGTGCCAGCTTCCAACAAGAAAAATATTAAATGTATTGGTTTTTCAC
6081 AGTGAAACTTAATTCAGTTTAGTTGAACCATATATGTGTGTGTATGGCATATATAAGATGAAAAAAGGAGAAAAAGTAAC
6161 AATAATAATGATGGTTGCCATCATTCATTGAACACCTATAATGTTTTAGGCATTATACTAGCTGATTTACAAATATTGTC
6241 TCATTTGATGCTACATTTATATTTCTATGAGGCAGATGTTGATTTCTCTTTGACTGCTGAAGAAACTGAAGGTCGGTCAG
6321 GTCAGGTGATTTGCCCAAAGTCCACACTGTCACTAAATGAACATAGATTGGTATGACTCCCAAGCCTGTGAGTTTTTGAC
6401 CGTCATATTCTGCCTCACTATGAAAAGTTTTTTTTCAATTTTTTTTAAATCAAAAGAAGTAGTATATGGAGAGAGAGGTG
6481 AAAATCCATGTTTGCTCTCTGCAGTTTCCAAACCATTCATGACGTGTTATTTTTGTACTGGATATAGTCATTTTTTAAAA
6561 TGCTACAAACTGTTCAAAAGAGCATGAACAACATGATAACTCCTTATAATTTTGTTGTAAGATAAATGACTAAAATTATG
6641 TGGGATATTTAATTTGGATAAGTGGAAATTCTATCACTTGATAAGCTCTCTTGAAGAATAATTATTTGAAAGATTGGACT
6721 TAATTCTGTATTGCCTGAAGTGTAAATCAGAGGTCAACAATTAGATTGCAAATCATGAAAAGCATAACTTCTAATTGTTT
6801 AGTCTTTTTAGGGAAACAAGCCCAGAAAAAAAGTAAGATTCTCATTCATTGGAGATAAGATTTCTATTTATCAAAGATAC
6881 TACACAAGAGTTAGATAGCAAGTAGTTCAAATGTCTTTTAAAGGTATCTGACATCTTTAAAGCTCTGTAATTTTTAAATT
6961 CTAAATTTTGTTACAGCTAATTTTTAAAAATTAATTGCTAAGTCATGGTCAAGTATTTCTGATGACTTACATGCTGTCTT
7041 TGGTATATTTTAAGTTTCTAAACCAAAACTACTATTTGACTCTATTACACCCTGTTTTAGAAAAACATTTGAGTTATACA
7121 ACTTACTAAAATGTATTTTAGCGGTGATGTTTTGGAGCACTGGTAATATAGTGTTTAACTTATTTTCTATTTTTTATCCC
7201 TCTATATTCGTGAAATTACTTCTATTTGAAAAGTTTTCCGCCAGTGATAAAAAAAGGCTGAGCACTATCTGTAAAAATTT
7281 TTAAGGTGTCCACTAGGTGGAGATATTGTGCTACATTTCCAAGTGTTGTAGTTAAACTTTTATTAGTCTGAATTAAACTC
7361 TTTTATAGTGTTTTATTGTTTTAAACCACAAAGATTTATAATCATTTATATCTATTTATCTAATGTTATTCAAATGTTTT
7441 CTGCGTTGTATGAAGCTAAGATAAATGTAAAAAAAACAAACAAAAAAAACCTCACTTTGTGTTTTGTAATCATTAGACGA
7521 TTTAACCTAATATATCTTCCCATATGATATGATCTTTGCATATGGCATACTTCATTCATATGACATAGTTAGAATCTTTT
7601 CCCACAAACAATGAGTGATGATATCTCATTTGAAAACTCGTGTAACATTGTATCAGCCACTGTTATAAAGTGATTTACCC
7681 ATGTTAGTCTCATAACAACTCTATGAGATCAGTACCGTACACATGGGGAAACTTAGTATAGAGAGGTGAAGTATTTTTTC
7761 CAAGATTACAAAATAACTGTCTGAGCTGGGATTCGTAACCAGGCAGCCTGACTCCAAAATCAATATTCTTAACTCTATTG
7841 TTATGATGGAGAAAGGCATGAAGTCTACCTTCAAATTCATGGCATTTTAGAAGGAAAAATTGTCGCAAGTAATGTGATTA
7921 TACTTCCTAGTTTTATAGGTCAGAAAAATGAGGTCCACACTAATTTTGCCTCTTCCACAGGGAGATAGATTCTCATCTAC
8001 CATTGTGTCTTTTGTTTCTGTTTTTGTCATGATACCTCAAATTGATATATGTTGTAATTATGAATTTAAGGAAGTAAAAA
8081 AATAACTCAGGGCTGGAGCCTTCAGCCATATTAACATACATTGACATAAAGACCTTTGTTTTAATATGAATGATTCCAGT
8161 TAACAAATGGAGAAATAGTTGTTTGAAAATTAATATTTAGCTTCTCAAAAGAGACTCCTGTTTGGAAGCAAATTGTTGGT
8241 TTAACAGGACATACTTTAGATATTTGAAAAATTCTCTGTGGAATCACAATCTCTTATTTTTAAGAATGTAGGAATATGTG
8321 TTCTATATGCTTTTAAGTTATGTATTACATACTATTCTCTAAAATAGAAATGTTTATTTGGCTTCTAAAAGTCATTTGTG
8401 AGTTGATGTTATTTAAAACTGCTTTTCAGTCAACTTATTCTTTATAAAAAAGTTTGTTCAAATAGCATGTTTTTATTTTG
8481 TTTCTAAATAAATTCATGTTTGATAATATTTTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ggUAGAAGGAAGUCGGAg 5'
            ||:|| : ||||||| 
Target 5' aaATTTTATCTCAGCCTa 3'
 5741 - 5758 156.00 -11.80
2 
miRNA  3' ggUAGAAGGA---AGUCGGAg 5'
            :|: ||||   ||||||| 
Target 5' caGTTCTCCTGCCTCAGCCTc 3'
 2922 - 2942 152.00 -17.50
3 
miRNA  3' gguagaaGGAAGUCGGag 5'
                 |||||||||  
Target 5' gctggagCCTTCAGCCat 3'
 8092 - 8109 135.00 -16.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31508569 22 COSMIC
COSN26965799 45 COSMIC
COSN30532096 46 COSMIC
COSN30514980 55 COSMIC
COSN15330449 73 COSMIC
COSN30101362 75 COSMIC
COSN31600882 104 COSMIC
COSN31575601 154 COSMIC
COSN31610523 211 COSMIC
COSN20092553 253 COSMIC
COSN31534392 273 COSMIC
COSN14888362 278 COSMIC
COSN31582822 430 COSMIC
COSN31527743 527 COSMIC
COSN25512798 550 COSMIC
COSN27073232 658 COSMIC
COSN7368796 677 COSMIC
COSN5321689 703 COSMIC
COSN27960344 718 COSMIC
COSN31959587 747 COSMIC
COSN8662245 783 COSMIC
COSN16016873 1064 COSMIC
COSN28390393 1598 COSMIC
COSN21719591 1894 COSMIC
COSN22384409 2049 COSMIC
COSN23477075 2238 COSMIC
COSN19151548 2379 COSMIC
COSN19385269 2417 COSMIC
COSN19734935 2604 COSMIC
COSN30740299 2635 COSMIC
COSN30760727 2636 COSMIC
COSN28558485 2664 COSMIC
COSN19730131 2806 COSMIC
COSN30569348 2821 COSMIC
COSN28884222 2843 COSMIC
COSN20754770 2881 COSMIC
COSN28066671 3395 COSMIC
COSN19592339 3453 COSMIC
COSN16835523 3500 COSMIC
COSN29794097 3781 COSMIC
COSN25613719 4187 COSMIC
COSN20092554 4193 COSMIC
COSN20109454 4208 COSMIC
COSN26357077 4319 COSMIC
COSN27983350 5206 COSMIC
COSN20109455 5261 COSMIC
COSN20109456 5266 COSMIC
COSN23036564 5267 COSMIC
COSN24333065 5268 COSMIC
COSN20109457 5273 COSMIC
COSN27943930 5285 COSMIC
COSN7368797 5326 COSMIC
COSN32227037 5619 COSMIC
COSN5715845 5724 COSMIC
COSN20109458 5922 COSMIC
COSN18828166 5923 COSMIC
COSN7368798 5987 COSMIC
COSN21873476 6285 COSMIC
COSN9558816 6439 COSMIC
COSN9558817 6474 COSMIC
COSN16231948 6594 COSMIC
COSN20571027 6687 COSMIC
COSN30392044 6747 COSMIC
COSN28426348 6852 COSMIC
COSN9558818 6906 COSMIC
COSN22764187 7082 COSMIC
COSN17878574 7084 COSMIC
COSN20092555 7109 COSMIC
COSN19427693 7164 COSMIC
COSN17625476 7249 COSMIC
COSN25957328 7302 COSMIC
COSN24224159 7374 COSMIC
COSN5942077 7586 COSMIC
COSN20109461 8082 COSMIC
COSN20109465 8272 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1367382959 2 dbSNP
rs1383005104 3 dbSNP
rs1357786323 9 dbSNP
rs747413390 10 dbSNP
rs1324900601 13 dbSNP
rs771417808 16 dbSNP
rs777334687 17 dbSNP
rs746389211 21 dbSNP
rs1202291633 23 dbSNP
rs775464689 24 dbSNP
rs1308247254 28 dbSNP
rs376132127 30 dbSNP
rs764273464 32 dbSNP
rs765898488 33 dbSNP
rs774601086 35 dbSNP
rs760534989 37 dbSNP
rs1330876185 39 dbSNP
rs368527816 45 dbSNP
rs542706061 48 dbSNP
rs1161206903 49 dbSNP
rs897879997 66 dbSNP
rs1161406727 71 dbSNP
rs929334755 72 dbSNP
rs3813901 73 dbSNP
rs531395362 77 dbSNP
rs1427994244 79 dbSNP
rs1237205862 80 dbSNP
rs1049036604 81 dbSNP
rs545332480 82 dbSNP
rs888050416 87 dbSNP
rs1208723912 100 dbSNP
rs1007762795 111 dbSNP
rs563028815 112 dbSNP
rs1399937424 122 dbSNP
rs902026633 126 dbSNP
rs998052937 126 dbSNP
rs1235226586 133 dbSNP
rs760365573 133 dbSNP
rs527322051 134 dbSNP
rs1333101346 145 dbSNP
rs11183301 153 dbSNP
rs1021284821 154 dbSNP
rs3841370 154 dbSNP
rs200332454 155 dbSNP
rs566875904 158 dbSNP
rs529806747 177 dbSNP
rs1351197732 180 dbSNP
rs1230248691 187 dbSNP
rs1197608781 189 dbSNP
rs938544762 193 dbSNP
rs1266814899 194 dbSNP
rs756583115 196 dbSNP
rs1487521315 197 dbSNP
rs549602534 206 dbSNP
rs1350566352 210 dbSNP
rs1220171884 212 dbSNP
rs116173763 213 dbSNP
rs1273276764 218 dbSNP
rs919375681 219 dbSNP
rs1341162876 231 dbSNP
rs538036204 235 dbSNP
rs1398004397 242 dbSNP
rs1359807066 244 dbSNP
rs192035690 249 dbSNP
rs185804832 250 dbSNP
rs1399645664 254 dbSNP
rs1171601696 255 dbSNP
rs778293902 256 dbSNP
rs1425077910 259 dbSNP
rs1190863577 267 dbSNP
rs190383954 271 dbSNP
rs887770729 271 dbSNP
rs1263059416 273 dbSNP
rs1211320630 281 dbSNP
rs751926573 299 dbSNP
rs1276810929 302 dbSNP
rs1039263961 313 dbSNP
rs1318705903 314 dbSNP
rs758622096 317 dbSNP
rs1216867713 323 dbSNP
rs1339819737 328 dbSNP
rs1284662068 334 dbSNP
rs1449996597 338 dbSNP
rs1338419019 339 dbSNP
rs1333112949 348 dbSNP
rs780209435 356 dbSNP
rs1167966047 362 dbSNP
rs374954751 364 dbSNP
rs1423570034 367 dbSNP
rs1182908187 372 dbSNP
rs1473979187 373 dbSNP
rs1409723889 374 dbSNP
rs1469550010 376 dbSNP
rs1187262613 378 dbSNP
rs1260214732 381 dbSNP
rs891567010 384 dbSNP
rs11183304 387 dbSNP
rs1021337578 390 dbSNP
rs1290519519 399 dbSNP
rs573908387 406 dbSNP
rs1354152400 413 dbSNP
rs1403330791 413 dbSNP
rs1302802130 417 dbSNP
rs536791737 419 dbSNP
rs1378715615 423 dbSNP
rs372849464 429 dbSNP
rs1349886061 432 dbSNP
rs1035618089 433 dbSNP
rs1407626886 434 dbSNP
rs1412253536 436 dbSNP
rs1163079038 449 dbSNP
rs960213983 450 dbSNP
rs7306030 453 dbSNP
rs1335758236 454 dbSNP
rs1246170973 458 dbSNP
rs776737917 474 dbSNP
rs1354719063 492 dbSNP
rs1223860055 493 dbSNP
rs1449835827 498 dbSNP
rs1222167749 499 dbSNP
rs1240628017 502 dbSNP
rs1355535080 506 dbSNP
rs918411901 522 dbSNP
rs950863056 526 dbSNP
rs1483168073 528 dbSNP
rs1294841873 537 dbSNP
rs1433634568 540 dbSNP
rs1348673231 565 dbSNP
rs1303036247 567 dbSNP
rs984848378 568 dbSNP
rs749248129 574 dbSNP
rs943390610 584 dbSNP
rs1157219098 586 dbSNP
rs146127506 588 dbSNP
rs1426099268 590 dbSNP
rs1436651615 592 dbSNP
rs1188179890 595 dbSNP
rs1487517509 615 dbSNP
rs1370068264 616 dbSNP
rs1471704985 620 dbSNP
rs1246083543 623 dbSNP
rs770885857 626 dbSNP
rs570917236 629 dbSNP
rs933550568 630 dbSNP
rs1053332313 641 dbSNP
rs891954099 643 dbSNP
rs1215617169 644 dbSNP
rs1312448585 652 dbSNP
rs199525682 669 dbSNP
rs1042832794 670 dbSNP
rs1395881321 672 dbSNP
rs1366211342 673 dbSNP
rs115236390 683 dbSNP
rs1401211781 685 dbSNP
rs368660219 689 dbSNP
rs1296782051 692 dbSNP
rs1035743206 705 dbSNP
rs535331173 717 dbSNP
rs1178452938 720 dbSNP
rs1245766933 737 dbSNP
rs1431515115 738 dbSNP
rs1428613069 742 dbSNP
rs140146443 743 dbSNP
rs1478798228 744 dbSNP
rs1260892309 747 dbSNP
rs994483378 752 dbSNP
rs1342513995 755 dbSNP
rs1230163049 768 dbSNP
rs1207519314 789 dbSNP
rs1025525744 794 dbSNP
rs1258219116 805 dbSNP
rs560591524 808 dbSNP
rs1342990639 809 dbSNP
rs1276806423 816 dbSNP
rs529656419 817 dbSNP
rs372682980 819 dbSNP
rs964753406 828 dbSNP
rs1258227660 849 dbSNP
rs563224089 852 dbSNP
rs112431870 866 dbSNP
rs1467225856 875 dbSNP
rs1182831221 876 dbSNP
rs1421414263 893 dbSNP
rs1248416848 904 dbSNP
rs1424195056 905 dbSNP
rs760382611 906 dbSNP
rs1460628018 913 dbSNP
rs535836200 923 dbSNP
rs369519778 926 dbSNP
rs571820560 934 dbSNP
rs6582599 951 dbSNP
rs1227263715 953 dbSNP
rs1322837077 963 dbSNP
rs1466656027 967 dbSNP
rs1394620633 969 dbSNP
rs905632566 975 dbSNP
rs548098978 978 dbSNP
rs1449098682 991 dbSNP
rs1400770586 997 dbSNP
rs181061266 1004 dbSNP
rs1321729673 1007 dbSNP
rs1370091494 1008 dbSNP
rs895479318 1011 dbSNP
rs369034063 1012 dbSNP
rs6582601 1020 dbSNP
rs1180049323 1029 dbSNP
rs1456077927 1032 dbSNP
rs952601211 1038 dbSNP
rs1005371525 1047 dbSNP
rs1209903051 1052 dbSNP
rs1306525753 1055 dbSNP
rs1267732858 1057 dbSNP
rs1244263569 1066 dbSNP
rs1018046692 1073 dbSNP
rs372458832 1079 dbSNP
rs1242660631 1084 dbSNP
rs1374949506 1108 dbSNP
rs1328321017 1113 dbSNP
rs371099846 1117 dbSNP
rs1030384347 1121 dbSNP
rs538700645 1131 dbSNP
rs558340548 1135 dbSNP
rs1160219120 1139 dbSNP
rs1437504692 1150 dbSNP
rs1362829458 1151 dbSNP
rs1199015139 1154 dbSNP
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rs369419154 1320 dbSNP
rs1347378538 1345 dbSNP
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rs1222944226 1350 dbSNP
rs1030853261 1359 dbSNP
rs1341108258 1363 dbSNP
rs1279961012 1364 dbSNP
rs543063742 1366 dbSNP
rs1343120896 1379 dbSNP
rs1334552140 1380 dbSNP
rs1397485102 1405 dbSNP
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rs989239529 1435 dbSNP
rs1425017125 1445 dbSNP
rs1173374707 1457 dbSNP
rs968992009 1466 dbSNP
rs1241954279 1476 dbSNP
rs1288957519 1481 dbSNP
rs747268521 1484 dbSNP
rs1213458939 1487 dbSNP
rs867906400 1488 dbSNP
rs1241500500 1494 dbSNP
rs927489060 1500 dbSNP
rs1318651693 1501 dbSNP
rs1259916724 1513 dbSNP
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rs532113178 1523 dbSNP
rs763319052 1535 dbSNP
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rs1380152705 1557 dbSNP
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rs28532364 1566 dbSNP
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rs1328676780 1569 dbSNP
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rs548139278 1576 dbSNP
rs940997414 1592 dbSNP
rs1383650063 1600 dbSNP
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rs1459726918 1646 dbSNP
rs1202492260 1654 dbSNP
rs536916948 1657 dbSNP
rs899738471 1687 dbSNP
rs770781240 1690 dbSNP
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rs1288419004 1697 dbSNP
rs1352337184 1698 dbSNP
rs1029476952 1704 dbSNP
rs890573286 1710 dbSNP
rs1354485724 1734 dbSNP
rs1324737393 1741 dbSNP
rs1222006909 1748 dbSNP
rs745684755 1749 dbSNP
rs1306124212 1754 dbSNP
rs560738551 1754 dbSNP
rs1440594419 1762 dbSNP
rs1382383965 1773 dbSNP
rs1175578860 1774 dbSNP
rs1322125282 1777 dbSNP
rs753038194 1778 dbSNP
rs1247224273 1790 dbSNP
rs569992089 1798 dbSNP
rs1489836336 1802 dbSNP
rs1246659738 1806 dbSNP
rs1217026234 1807 dbSNP
rs1355466773 1810 dbSNP
rs1304347107 1820 dbSNP
rs1222733703 1821 dbSNP
rs1367612753 1825 dbSNP
rs1275974259 1832 dbSNP
rs1407359927 1841 dbSNP
rs538787273 1842 dbSNP
rs1010312156 1848 dbSNP
rs1020344394 1851 dbSNP
rs772041456 1852 dbSNP
rs968708331 1857 dbSNP
rs1000173381 1859 dbSNP
rs1416746172 1868 dbSNP
rs1201683631 1884 dbSNP
rs370562880 1884 dbSNP
rs1177158971 1885 dbSNP
rs1415109402 1886 dbSNP
rs1425969722 1893 dbSNP
rs181157391 1902 dbSNP
rs775395392 1903 dbSNP
rs1383063767 1906 dbSNP
rs1258586577 1910 dbSNP
rs1214560360 1921 dbSNP
rs1411322898 1934 dbSNP
rs1280207709 1959 dbSNP
rs199752916 1964 dbSNP
rs993428848 1965 dbSNP
rs1283161138 1972 dbSNP
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rs1170657008 1976 dbSNP
rs565565958 1979 dbSNP
rs951240557 1986 dbSNP
rs1355782898 1989 dbSNP
rs1430364269 1990 dbSNP
rs982505421 1994 dbSNP
rs1439328914 2006 dbSNP
rs986507623 2011 dbSNP
rs760472709 2031 dbSNP
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rs1171214810 2047 dbSNP
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rs760987097 2050 dbSNP
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rs1229429829 2068 dbSNP
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rs1307558246 8073 dbSNP
rs1322355109 8076 dbSNP
rs10653232 8079 dbSNP
rs1295573212 8079 dbSNP
rs67853411 8080 dbSNP
rs10701162 8082 dbSNP
rs369915591 8083 dbSNP
rs371925000 8084 dbSNP
rs1247666568 8091 dbSNP
rs1264173593 8094 dbSNP
rs1421468190 8105 dbSNP
rs1378459896 8117 dbSNP
rs185682042 8120 dbSNP
rs1157941810 8123 dbSNP
rs1433624499 8127 dbSNP
rs1269185029 8128 dbSNP
rs1189110980 8134 dbSNP
rs1488387431 8135 dbSNP
rs1487914078 8148 dbSNP
rs1263306464 8157 dbSNP
rs58240176 8165 dbSNP
rs1350830352 8179 dbSNP
rs1238483561 8200 dbSNP
rs1458819692 8201 dbSNP
rs779914544 8215 dbSNP
rs1176338267 8219 dbSNP
rs1240045528 8230 dbSNP
rs1406645240 8236 dbSNP
rs1046065 8243 dbSNP
rs571987966 8249 dbSNP
rs187804137 8258 dbSNP
rs527961457 8261 dbSNP
rs1046066 8263 dbSNP
rs1166885391 8266 dbSNP
rs376242977 8266 dbSNP
rs11433041 8267 dbSNP
rs369336492 8267 dbSNP
rs397797503 8267 dbSNP
rs1299007485 8270 dbSNP
rs373727942 8275 dbSNP
rs1010218755 8277 dbSNP
rs1020560944 8278 dbSNP
rs904761756 8284 dbSNP
rs1046067 8286 dbSNP
rs1423953135 8288 dbSNP
rs1432255768 8288 dbSNP
rs1402128346 8290 dbSNP
rs1487057294 8291 dbSNP
rs1261768670 8294 dbSNP
rs1444867640 8297 dbSNP
rs1483842341 8301 dbSNP
rs1258159137 8307 dbSNP
rs1231596758 8309 dbSNP
rs1046069 8312 dbSNP
rs1297784716 8321 dbSNP
rs1323240951 8326 dbSNP
rs1380032749 8333 dbSNP
rs1000403506 8342 dbSNP
rs1397837162 8346 dbSNP
rs140813693 8349 dbSNP
rs1321642883 8351 dbSNP
rs1297583189 8353 dbSNP
rs1046070 8355 dbSNP
rs1404197512 8355 dbSNP
rs1300985508 8358 dbSNP
rs1465392583 8360 dbSNP
rs1400746298 8364 dbSNP
rs1219716436 8366 dbSNP
rs1476600228 8366 dbSNP
rs1046071 8367 dbSNP
rs992545714 8369 dbSNP
rs1316402410 8389 dbSNP
rs1258927858 8392 dbSNP
rs1196411904 8399 dbSNP
rs556236151 8401 dbSNP
rs1046072 8406 dbSNP
rs1199239881 8420 dbSNP
rs1483322321 8435 dbSNP
rs540839086 8439 dbSNP
rs1200762410 8440 dbSNP
rs1269691376 8446 dbSNP
rs1316247444 8446 dbSNP
rs1245673674 8453 dbSNP
rs59621452 8454 dbSNP
rs1310562170 8457 dbSNP
rs1451758808 8468 dbSNP
rs537734762 8468 dbSNP
rs1400771640 8470 dbSNP
rs1378248234 8472 dbSNP
rs1253377222 8485 dbSNP
rs1399157279 8489 dbSNP
rs538461560 8489 dbSNP
rs982836225 8490 dbSNP
rs1186063987 8491 dbSNP
rs554472020 8491 dbSNP
rs909827514 8491 dbSNP
rs1444490840 8492 dbSNP
rs941264594 8496 dbSNP
rs1425551187 8500 dbSNP
rs1456698472 8507 dbSNP
rs1463839788 8507 dbSNP
rs1272610481 8509 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ggUAGAAGGA---AGUCGGAg 5'
            :|: ||||   ||||||| 
Target 5' -aGUUCUCCUGCCUCAGCCUc 3'
 		1 - 20
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000308742.4 | 3UTR | AGUUCUCCUGCCUCAGCCUCCCG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
390 hsa-miR-4419b Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061343 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT072743 GLCE glucuronic acid epimerase 2 2
MIRT180549 TXNIP thioredoxin interacting protein 2 2
MIRT186147 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT271044 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT334761 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 6
MIRT443279 TSPAN15 tetraspanin 15 2 2
MIRT447047 ZNF439 zinc finger protein 439 2 2
MIRT447351 KIF6 kinesin family member 6 2 2
MIRT448925 CKS1B CDC28 protein kinase regulatory subunit 1B 2 2
MIRT452899 PSD4 pleckstrin and Sec7 domain containing 4 2 2
MIRT453087 SUMF2 sulfatase modifying factor 2 2 2
MIRT454071 SLC35E3 solute carrier family 35 member E3 2 2
MIRT456216 LIX1L limb and CNS expressed 1 like 2 6
MIRT456951 LRP10 LDL receptor related protein 10 2 2
MIRT458025 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT459999 RFT1 RFT1 homolog 2 2
MIRT460046 CDCP1 CUB domain containing protein 1 2 2
MIRT460982 STK17B serine/threonine kinase 17b 2 2
MIRT464405 URM1 ubiquitin related modifier 1 2 2
MIRT466256 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 2
MIRT466536 TBXA2R thromboxane A2 receptor 2 2
MIRT470922 PLD5 phospholipase D family member 5 2 8
MIRT472835 MTMR10 myotubularin related protein 10 2 6
MIRT473352 MEMO1 mediator of cell motility 1 2 2
MIRT475504 HSP90B1 heat shock protein 90 beta family member 1 2 2
MIRT478862 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT480898 BCL9L B-cell CLL/lymphoma 9 like 2 2
MIRT482686 NXN nucleoredoxin 2 4
MIRT484128 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT486172 TLE3 transducin like enhancer of split 3 2 4
MIRT486539 CLCN7 chloride voltage-gated channel 7 2 2
MIRT486588 ZNF619 zinc finger protein 619 2 2
MIRT495475 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT495536 TXNRD2 thioredoxin reductase 2 2 2
MIRT495566 UNC5C unc-5 netrin receptor C 2 2
MIRT495719 PADI1 peptidyl arginine deiminase 1 2 2
MIRT495890 CLOCK clock circadian regulator 2 2
MIRT495932 SLC7A5P2 solute carrier family 7 member 5 pseudogene 2 2 2
MIRT496026 ZBED3 zinc finger BED-type containing 3 2 2
MIRT496216 PAX6 paired box 6 2 2
MIRT496349 VAMP1 vesicle associated membrane protein 1 2 2
MIRT496354 PPY pancreatic polypeptide 2 2
MIRT496400 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT496416 PARVB parvin beta 2 2
MIRT496458 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 2 2
MIRT496519 GINS2 GINS complex subunit 2 2 2
MIRT496562 SLC39A9 solute carrier family 39 member 9 2 2
MIRT498605 KRT8 keratin 8 2 2
MIRT503434 SLC25A45 solute carrier family 25 member 45 2 6
MIRT503573 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT503847 ATP13A4 ATPase 13A4 2 4
MIRT504247 LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase 2 4
MIRT505606 SLC35F1 solute carrier family 35 member F1 2 2
MIRT507749 CERS2 ceramide synthase 2 2 4
MIRT508411 C1orf210 chromosome 1 open reading frame 210 2 6
MIRT508508 RSRC1 arginine and serine rich coiled-coil 1 2 6
MIRT508944 AK4 adenylate kinase 4 2 4
MIRT509460 ZNF587 zinc finger protein 587 2 6
MIRT509862 ZNF641 zinc finger protein 641 2 4
MIRT511397 IKZF3 IKAROS family zinc finger 3 2 6
MIRT512517 BTBD19 BTB domain containing 19