miRTarBase - #MIRT187279


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pre-miRNA Information
pre-miRNA hsa-mir-6830   
Genomic Coordinates chr5: 132217849 - 132217918
Description Homo sapiens miR-6830 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6830-3p
Sequence 48| UGUCUUUCUUCUCUCCCUUGCAG |70
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs772425565 6 dbSNP
rs1223446041 11 dbSNP
rs771777520 13 dbSNP
rs1416751362 14 dbSNP
rs564286593 15 dbSNP
rs748409873 17 dbSNP
rs1297884779 20 dbSNP
Putative Targets

Gene Information
Gene Symbol DAZAP2   
Synonyms PRTB
Description DAZ associated protein 2
Transcript NM_001136264   
Other Transcripts NM_001136266 , NM_001136267 , NM_001136268 , NM_001136269 , NM_014764   
Expression
Putative miRNA Targets on DAZAP2
3'UTR of DAZAP2
(miRNA target sites are highlighted)		 
>DAZAP2|NM_001136264|3'UTR
   1 GGAACCAAGGCCACCTCTGTGCCGGGAAAGACATCACATACCTTCAGCACTTCTCACAATGTAACTGCTTTAGTCATATT
  81 AACCTGAAGTTGCAGTTTAGACACATGTTGTTGGGGTGTCTTTCTGGTGCCCAAACTTTCAGGCACTTTTCAAATTTAAT
 161 AAGGAACCATGTAATGGTAGCAGTACCTCCCTAAAGCATTTTGAGGTAGGGGAGGTATCCATTCATAAAATGAATGTGGG
 241 TGAAGCCGCCCTAAGGATTTTCCTTTAATTTCTCTGGAGTAATACTGTACCATACTGGTCTTTGCTTTTAGTAATAAAAC
 321 ATCAAATTAGGTTTGGAGGGAACTTTGATCTTCCTAAGAATTAAAGTTGCCAAATTATTCTGATTGGTCTTTAATCTCCT
 401 TTAAGTCTTTGATATATATTACTTGTTATAAATGGAACGCATTAGTTGTCTGCCTTTTCCTTTCCATCCCTTGCCCCACC
 481 CATCCCATCTCCAACCCTAGTCTTCCATTTCCTCCCGCCAGTCTCCATTGAATCAATGGTGCAGGACAGAAAGCCAGTCA
 561 GACTAATTTCCTTCTTTCCTCGCACTTCTCCCCACTCGTCATCTTTTAACTAGTGTTTCACAAGGATCCTCTGAAACCCT
 641 CTCTGTGCCCCAAGTACAGATGCCATTACTTCTGCTTTCGTATCTCCTCAGGCAAAAGTGGAGGGTGCCTTATGGGCCCT
 721 CCTCATAGGTTGTCTCTGCATACACGAACCTAACCCAAATTTGCTTTGGTGCCAGAAAAACTGAGCTATGTTTGAACAAA
 801 GATGTCGTGCAAACTGTACTGTGAACAACAGTTGGTTTAAAATATGAGGGGCAAGGAGGAGGATGCATTTCAAAAGCTTG
 881 ATTGATGTGTTCAGAGCTAAATTAAGAGGAGTTTTCAGATCAAAAACTGGTTACCATTTTTTGTCAGAGTGTCTGATGCG
 961 GCCACTCATTCGGCTCCCCAGAATTCCTAGACTGGGTTAATAGGGTCATATTGTGAATGTCTCACTACAAAATGACTTGA
1041 GTCCAGTGAAATCTCATTAGGGTTTAAGAATATTTCAGGGATCCTTAATGTTTTGATTTTTGTTTTCTGAAATTGGATTT
1121 TATTTTATTTTATCTTATAATTTCAGTTCATCTAAATTGTGTGTTCTGTACATGTGATGTTTGACTGTACCATTGACTGT
1201 TATGGAAGTTCAGCGTTGTATGTCTCTCTCTACACTGTGGTGCACTTAACTTGTGGAATTTTTATACTAAAAATGTAGAA
1281 TAAAGACTATTTTGAAGATTTGAATAAAGTGATGAAGTTGCATTACACCTCACTGCAAGGATTCTTTACTTAGCTTGTTT
1361 TTAGATTTCTTCTATATATATTTTATTTATATCCCATCTAGAATTCAGCTAGGTGCTGCTGCTGCTCTGTTTCCTTTGAT
1441 GACGCTTTGAAATAAAGGCAGGAGTACAAGCCTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gacGUUCC--------CUCUCUUCUUUCUGu 5'
             |||||        | |  ::||||||| 
Target 5' aacCAAGGCCACCTCTGTGCCGGGAAAGACa 3'
 3 - 33 146.00 -16.50
2 
miRNA  3' gacGUUCCCUC--UCU-UCUUUCUGu 5'
             ||| || |  :|| |||||| | 
Target 5' aatCAATGGTGCAGGACAGAAAGCCa 3'
 531 - 556 130.00 -12.10
3 
miRNA  3' gacguucccucUCUUCUUUCUGu 5'
                     |||| |||||| 
Target 5' actaaaaatgtAGAATAAAGACt 3'
 1266 - 1288 128.00 -8.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM8179832 11 COSMIC
COSM2009239 25 COSMIC
COSM6640143 32 COSMIC
COSM2009240 46 COSMIC
COSM8638713 54 COSMIC
COSM7639144 76 COSMIC
COSM8719256 101 COSMIC
COSM9112114 111 COSMIC
COSM9834883 111 COSMIC
COSM4879998 125 COSMIC
COSM9834884 131 COSMIC
COSM9579709 141 COSMIC
COSM9834885 141 COSMIC
COSM4042675 148 COSMIC
COSM9857964 152 COSMIC
COSM1739875 166 COSMIC
COSM9834886 176 COSMIC
COSM9834887 185 COSMIC
COSN30160074 225 COSMIC
COSN31515730 273 COSMIC
COSN30526686 315 COSMIC
COSN31485493 343 COSMIC
COSN31548028 412 COSMIC
COSN28722043 471 COSMIC
COSN28798880 479 COSMIC
COSN30542021 518 COSMIC
COSN24470830 663 COSMIC
COSN26649497 795 COSMIC
COSN20722565 972 COSMIC
COSN31570941 1049 COSMIC
COSN21848396 1122 COSMIC
COSN31609023 1271 COSMIC
COSN31515538 1273 COSMIC
COSN5834608 1279 COSMIC
COSN31568582 1370 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs377252029 6 dbSNP
rs1444879102 11 dbSNP
rs1321523231 12 dbSNP
rs779908029 14 dbSNP
rs1049467 18 dbSNP
rs780268345 20 dbSNP
rs749383352 21 dbSNP
rs1356278307 22 dbSNP
rs866151968 23 dbSNP
rs201854240 24 dbSNP
rs374168708 25 dbSNP
rs748645128 26 dbSNP
rs772739085 43 dbSNP
rs1273115172 45 dbSNP
rs1237312012 47 dbSNP
rs1442851717 51 dbSNP
rs773665805 54 dbSNP
rs1388517124 56 dbSNP
rs373137618 58 dbSNP
rs776209061 59 dbSNP
rs1194425333 60 dbSNP
rs759069912 62 dbSNP
rs1246428707 63 dbSNP
rs764700099 69 dbSNP
rs1453823665 76 dbSNP
rs752647176 76 dbSNP
rs758289456 79 dbSNP
rs1416463152 80 dbSNP
rs190665763 81 dbSNP
rs764040405 85 dbSNP
rs1340353423 89 dbSNP
rs1401170814 95 dbSNP
rs1278257723 101 dbSNP
rs751297697 104 dbSNP
rs746969932 106 dbSNP
rs1170336145 109 dbSNP
rs757111801 121 dbSNP
rs780242085 124 dbSNP
rs768400345 127 dbSNP
rs749523180 135 dbSNP
rs1485275086 137 dbSNP
rs1194362350 139 dbSNP
rs746420669 141 dbSNP
rs1299393933 147 dbSNP
rs1388262116 148 dbSNP
rs755057505 150 dbSNP
rs1476920867 153 dbSNP
rs1272850169 160 dbSNP
rs987071954 162 dbSNP
rs1346044700 170 dbSNP
rs377433711 174 dbSNP
rs1479147558 180 dbSNP
rs1171139324 182 dbSNP
rs1402007396 183 dbSNP
rs776378700 189 dbSNP
rs1403859391 194 dbSNP
rs1300666893 196 dbSNP
rs1361876745 197 dbSNP
rs1410677356 199 dbSNP
rs1015602736 206 dbSNP
rs1481731111 209 dbSNP
rs748284553 211 dbSNP
rs1182027233 215 dbSNP
rs1331284058 222 dbSNP
rs1234985252 226 dbSNP
rs567234272 228 dbSNP
rs1252488156 233 dbSNP
rs1272833304 240 dbSNP
rs1346932287 242 dbSNP
rs948850857 247 dbSNP
rs980314694 248 dbSNP
rs536198616 249 dbSNP
rs1345866857 250 dbSNP
rs980592380 254 dbSNP
rs1407852894 255 dbSNP
rs775859943 272 dbSNP
rs1348711188 274 dbSNP
rs938558274 281 dbSNP
rs14678 286 dbSNP
rs1197419482 290 dbSNP
rs1443268477 291 dbSNP
rs760873231 292 dbSNP
rs1358771802 294 dbSNP
rs1174171357 306 dbSNP
rs1471176274 310 dbSNP
rs552716848 330 dbSNP
rs1430351838 346 dbSNP
rs1159084577 348 dbSNP
rs182906473 349 dbSNP
rs1230705337 353 dbSNP
rs1052999201 354 dbSNP
rs891448299 355 dbSNP
rs947076145 373 dbSNP
rs1205119086 374 dbSNP
rs1235409481 374 dbSNP
rs1470930155 379 dbSNP
rs574069333 385 dbSNP
rs544746793 388 dbSNP
rs1042721105 401 dbSNP
rs1480309011 406 dbSNP
rs1331107409 413 dbSNP
rs572861649 415 dbSNP
rs1309294015 420 dbSNP
rs1224436388 423 dbSNP
rs1378467942 426 dbSNP
rs1174790553 430 dbSNP
rs187567108 439 dbSNP
rs900219048 440 dbSNP
rs1408902235 455 dbSNP
rs562967636 460 dbSNP
rs1050309711 461 dbSNP
rs1160412962 466 dbSNP
rs1422746372 467 dbSNP
rs1328211840 470 dbSNP
rs15839 477 dbSNP
rs1185053661 478 dbSNP
rs891331325 490 dbSNP
rs578210065 498 dbSNP
rs1206556534 504 dbSNP
rs1486701669 505 dbSNP
rs1352851703 512 dbSNP
rs1243904816 513 dbSNP
rs1444548722 517 dbSNP
rs1008890435 518 dbSNP
rs1248520715 522 dbSNP
rs138200161 529 dbSNP
rs190893016 536 dbSNP
rs1297373967 540 dbSNP
rs1430864303 549 dbSNP
rs1015885498 555 dbSNP
rs763165216 556 dbSNP
rs1284997619 560 dbSNP
rs961351065 567 dbSNP
rs995483692 574 dbSNP
rs1347677655 579 dbSNP
rs1164919195 580 dbSNP
rs1027001264 582 dbSNP
rs1389202667 583 dbSNP
rs970512665 586 dbSNP
rs1217957754 589 dbSNP
rs1430098040 591 dbSNP
rs1270197430 594 dbSNP
rs1209240704 595 dbSNP
rs764393840 598 dbSNP
rs1204677610 599 dbSNP
rs1224774585 601 dbSNP
rs1360202558 611 dbSNP
rs1245752148 615 dbSNP
rs1274214712 621 dbSNP
rs1328567899 622 dbSNP
rs1296734389 624 dbSNP
rs980213684 627 dbSNP
rs1489745529 629 dbSNP
rs183437083 637 dbSNP
rs542971167 644 dbSNP
rs1344140153 646 dbSNP
rs928450366 648 dbSNP
rs1424773431 651 dbSNP
rs1130598 663 dbSNP
rs1431933351 666 dbSNP
rs1463198170 671 dbSNP
rs988669890 680 dbSNP
rs762092834 681 dbSNP
rs79990195 683 dbSNP
rs1255610504 685 dbSNP
rs551460767 686 dbSNP
rs1418071214 687 dbSNP
rs1270997156 688 dbSNP
rs112397706 697 dbSNP
rs1199995136 699 dbSNP
rs1411715820 706 dbSNP
rs1490536903 708 dbSNP
rs1273924919 712 dbSNP
rs1329677796 715 dbSNP
rs1365155020 718 dbSNP
rs776926358 720 dbSNP
rs1194361749 726 dbSNP
rs1403366797 727 dbSNP
rs947317953 737 dbSNP
rs1252304971 741 dbSNP
rs1042667390 746 dbSNP
rs1285769522 747 dbSNP
rs1406017424 749 dbSNP
rs921614168 752 dbSNP
rs1326268594 759 dbSNP
rs1396734907 763 dbSNP
rs113479053 768 dbSNP
rs1399246747 791 dbSNP
rs1051557904 799 dbSNP
rs891278165 804 dbSNP
rs560246340 807 dbSNP
rs530580240 808 dbSNP
rs1179720051 813 dbSNP
rs1439816584 819 dbSNP
rs1251545836 826 dbSNP
rs897383397 828 dbSNP
rs117882905 830 dbSNP
rs187326882 836 dbSNP
rs1224729728 843 dbSNP
rs1329057200 845 dbSNP
rs1356764592 846 dbSNP
rs1240595595 847 dbSNP
rs1224270935 852 dbSNP
rs1271414957 853 dbSNP
rs1335780973 859 dbSNP
rs754989656 874 dbSNP
rs970123863 875 dbSNP
rs1449924578 878 dbSNP
rs1002012634 883 dbSNP
rs567524207 885 dbSNP
rs1408112303 889 dbSNP
rs1035803032 891 dbSNP
rs1240840085 899 dbSNP
rs536171824 911 dbSNP
rs1168523635 912 dbSNP
rs1160179730 915 dbSNP
rs1384706554 922 dbSNP
rs10876156 928 dbSNP
rs1364389055 937 dbSNP
rs1165704261 946 dbSNP
rs1460142883 946 dbSNP
rs1245412490 947 dbSNP
rs1204681435 951 dbSNP
rs752549380 960 dbSNP
rs1282793081 965 dbSNP
rs1207349177 972 dbSNP
rs1399875327 973 dbSNP
rs1316015322 980 dbSNP
rs1283080852 982 dbSNP
rs1804087 984 dbSNP
rs1431422654 987 dbSNP
rs538667949 990 dbSNP
rs1130641 1000 dbSNP
rs1379950691 1002 dbSNP
rs531183779 1006 dbSNP
rs921585425 1011 dbSNP
rs1434131204 1012 dbSNP
rs931698243 1021 dbSNP
rs1320211543 1024 dbSNP
rs1401214806 1029 dbSNP
rs1385839952 1030 dbSNP
rs1162989967 1039 dbSNP
rs1051936014 1040 dbSNP
rs911623900 1046 dbSNP
rs1184387238 1051 dbSNP
rs940437003 1051 dbSNP
rs11555478 1086 dbSNP
rs1240652714 1089 dbSNP
rs1196035703 1090 dbSNP
rs1448067857 1091 dbSNP
rs146146716 1117 dbSNP
rs373390567 1117 dbSNP
rs1219579401 1123 dbSNP
rs570998465 1123 dbSNP
rs750889518 1123 dbSNP
rs192230455 1124 dbSNP
rs1048669387 1128 dbSNP
rs749397615 1130 dbSNP
rs1271702654 1137 dbSNP
rs1431458998 1139 dbSNP
rs1194529492 1142 dbSNP
rs1242538893 1153 dbSNP
rs1001518070 1159 dbSNP
rs1367462800 1161 dbSNP
rs1164454595 1164 dbSNP
rs1409599023 1167 dbSNP
rs537613123 1177 dbSNP
rs1417881988 1179 dbSNP
rs1169983840 1181 dbSNP
rs1442848132 1182 dbSNP
rs1476050084 1187 dbSNP
rs1036112856 1194 dbSNP
rs551711588 1195 dbSNP
rs1490699116 1202 dbSNP
rs1185554208 1203 dbSNP
rs895869830 1204 dbSNP
rs1305381743 1212 dbSNP
rs1010278173 1215 dbSNP
rs557601567 1216 dbSNP
rs968553922 1223 dbSNP
rs1156543080 1229 dbSNP
rs1386888416 1230 dbSNP
rs1207090549 1231 dbSNP
rs1401152198 1240 dbSNP
rs1406620727 1244 dbSNP
rs1335999183 1246 dbSNP
rs1303820003 1264 dbSNP
rs1441815651 1266 dbSNP
rs978637806 1276 dbSNP
rs1403889624 1288 dbSNP
rs1140398 1306 dbSNP
rs1410900869 1322 dbSNP
rs751449021 1323 dbSNP
rs777618382 1341 dbSNP
rs1481697995 1361 dbSNP
rs987127853 1363 dbSNP
rs1176096790 1367 dbSNP
rs1035517058 1381 dbSNP
rs895691390 1383 dbSNP
rs1013063583 1385 dbSNP
rs1236452826 1387 dbSNP
rs746678770 1389 dbSNP
rs1460707075 1390 dbSNP
rs1261015229 1392 dbSNP
rs184668320 1399 dbSNP
rs971846387 1410 dbSNP
rs968886784 1414 dbSNP
rs931491960 1417 dbSNP
rs1371211431 1422 dbSNP
rs1300126399 1423 dbSNP
rs1443200037 1425 dbSNP
rs76567392 1425 dbSNP
rs1335118179 1427 dbSNP
rs1471267859 1435 dbSNP
rs1049057269 1436 dbSNP
rs999794608 1443 dbSNP
rs937596680 1444 dbSNP
rs1460405492 1450 dbSNP
rs1205602271 1452 dbSNP
rs1177490306 1464 dbSNP
rs141787286 1465 dbSNP
rs541596133 1469 dbSNP
rs1205294723 1470 dbSNP
rs150498248 1472 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545217. RNA binding protein: AGO2. Condition:miR-7 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gacguuccCUCUCUUCUUUCugu 5'
                  | |  ::|||||   
Target 5' ccaccucuGUGCCGGGAAAG--- 3'
 		1 - 20
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 9802.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gacguuccCUCUCUUCUUUCugu 5'
                  | |  ::|||||   
Target 5' ccaccucuGUGCCGGGAAAG--- 3'
 		1 - 20
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 9802.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM545217
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-7 transfection
Location of target site ENST00000412716.3 | 3UTR | ccaccucugugccgggaaag
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000412716.3 | 3UTR | ccaccucugugccgggaaag
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000412716.3 | 3UTR | aaccaaggccaccucugugccgggaaagacaucacauaccuucagcacuucucacaaug
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
82 hsa-miR-6830-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT081461 SSBP4 single stranded DNA binding protein 4 2 2
MIRT132029 IER5 immediate early response 5 2 2
MIRT187279 DAZAP2 DAZ associated protein 2 2 6
MIRT350303 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 8
MIRT350307 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 8
MIRT372105 EIF3H eukaryotic translation initiation factor 3 subunit H 2 2
MIRT408159 DCK deoxycytidine kinase 2 4
MIRT442623 LOX lysyl oxidase 2 2
MIRT442952 ASXL2 additional sex combs like 2, transcriptional regulator 2 2
MIRT469401 REL REL proto-oncogene, NF-kB subunit 2 6
MIRT476631 G2E3 G2/M-phase specific E3 ubiquitin protein ligase 2 2
MIRT485039 TMEM189 transmembrane protein 189 2 8
MIRT485133 RASSF8 Ras association domain family member 8 2 6
MIRT498963 ORC4 origin recognition complex subunit 4 2 8
MIRT500082 L2HGDH L-2-hydroxyglutarate dehydrogenase 2 8
MIRT503018 CAND1 cullin associated and neddylation dissociated 1 2 2
MIRT503374 SCAMP1 secretory carrier membrane protein 1 2 2
MIRT504975 ZNF711 zinc finger protein 711 2 2
MIRT518984 NNT nicotinamide nucleotide transhydrogenase 2 4
MIRT520754 TFDP1 transcription factor Dp-1 2 6
MIRT526785 SGCD sarcoglycan delta 2 2
MIRT533868 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT535107 PMEPA1 prostate transmembrane protein, androgen induced 1 2 2
MIRT538991 BAG4 BCL2 associated athanogene 4 2 2
MIRT543518 PRSS21 protease, serine 21 2 2
MIRT543813 SNX10 sorting nexin 10 2 2
MIRT543825 GSG1 germ cell associated 1 2 2
MIRT545334 CCDC83 coiled-coil domain containing 83 2 2
MIRT545669 DECR1 2,4-dienoyl-CoA reductase 1 2 2
MIRT547798 KAT7 lysine acetyltransferase 7 2 2
MIRT548068 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT549577 ZNF850 zinc finger protein 850 2 2
MIRT550753 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT550808 FAM229B family with sequence similarity 229 member B 2 2
MIRT551457 CARKD NAD(P)HX dehydratase 2 2
MIRT551852 RPS3 ribosomal protein S3 2 2
MIRT554218 SLC30A1 solute carrier family 30 member 1 2 2
MIRT556588 LEPROT leptin receptor overlapping transcript 2 2
MIRT557344 HDGF heparin binding growth factor 2 4
MIRT571945 LARP1 La ribonucleoprotein domain family member 1 2 2
MIRT574374 YY1 YY1 transcription factor 2 2
MIRT611142 CRISP1 cysteine rich secretory protein 1 2 4
MIRT611799 FCRL4 Fc receptor like 4 2 2
MIRT612834 KCNN3 potassium calcium-activated channel subfamily N member 3 2 2
MIRT617257 GLIPR1L2 GLI pathogenesis related 1 like 2 2 2
MIRT619781 NRIP2 nuclear receptor interacting protein 2 2 2
MIRT620440 SEMA3E semaphorin 3E 2 2
MIRT621725 TNR tenascin R 2 2
MIRT622905 PCDH17 protocadherin 17 2 2
MIRT623428 KLF6 Kruppel like factor 6 2 2
MIRT627856 PITPNM3 PITPNM family member 3 2 2
MIRT633894 FGF10 fibroblast growth factor 10 2 2
MIRT636257 SEC24D SEC24 homolog D, COPII coat complex component 2 2
MIRT640654 FRY FRY microtubule binding protein 2 2
MIRT640857 TSHZ2 teashirt zinc finger homeobox 2 2 4
MIRT641220 LRCH1 leucine rich repeats and calponin homology domain containing 1 2 2
MIRT642526 ANKRD9 ankyrin repeat domain 9 2 2
MIRT646011 TNFAIP8L2 TNF alpha induced protein 8 like 2 2 2
MIRT653317 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT657940 GATM glycine amidinotransferase 2 2
MIRT658291 FAM83F family with sequence similarity 83 member F 2 2
MIRT660607 ANTXR2 anthrax toxin receptor 2 2 2
MIRT664675 LMBR1L limb development membrane protein 1 like 2 2
MIRT664889 PRRG4 proline rich and Gla domain 4 2 2
MIRT666972 PHF20L1 PHD finger protein 20 like 1 2 2
MIRT669128 CD200 CD200 molecule 2 2
MIRT673267 RUNDC1 RUN domain containing 1 2 2
MIRT704609 CLN8 CLN8, transmembrane ER and ERGIC protein 2 2
MIRT709404 TADA2A transcriptional adaptor 2A 2 2
MIRT710963 CMKLR1 chemerin chemokine-like receptor 1 2 2
MIRT711745 DTX1 deltex E3 ubiquitin ligase 1 2 2
MIRT715009 CYP1B1 cytochrome P450 family 1 subfamily B member 1 2 2
MIRT715467 NEGR1 neuronal growth regulator 1 2 2
MIRT715737 CD226 CD226 molecule 2 2
MIRT716526 KSR2 kinase suppressor of ras 2 2 2
MIRT718311 TMPRSS11B transmembrane protease, serine 11B 2 2
MIRT719006 TMEM184C transmembrane protein 184C 2 2
MIRT719319 STAC SH3 and cysteine rich domain 2 2
MIRT722092 SUSD1 sushi domain containing 1 2 2
MIRT723198 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT723239 BTLA B and T lymphocyte associated 2 2
MIRT724850 IGFBP5 insulin like growth factor binding protein 5 2 2

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