miRTarBase - #MIRT189775


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pre-miRNA Information
pre-miRNA hsa-mir-4729   
Genomic Coordinates chr17: 59366083 - 59366154
Description Homo sapiens miR-4729 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4729
Sequence 10| UCAUUUAUCUGUUGGGAAGCUA |31
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN28205519 5 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1167550125 15 dbSNP
rs1022075979 18 dbSNP
rs967769645 19 dbSNP
Putative Targets

Gene Information
Gene Symbol CDADC1   
Synonyms NYD-SP15, bA103J18.1
Description cytidine and dCMP deaminase domain containing 1
Transcript NM_030911   
Expression
Putative miRNA Targets on CDADC1
3'UTR of CDADC1
(miRNA target sites are highlighted)		 
>CDADC1|NM_030911|3'UTR
   1 GAAGGCCTGTCTACACTGCAGGGGAACCTCAAGAACTTTTCATTGCACTTCTAAAATTCAGCCTTGTTCATTCAGAAAAT
  81 AAGGATGGATTTTGTGAATAATTGAAAAGATTTTTTAAGGAAGCTAATTTATTTCTAGGATACAAATGGTGTTAATAAGA
 161 ATATTTGTCTTTTAGATTTATGTGTGGGTTTTCCATAATGTAGTAGTGTGTTATTTTATTACACGAAATGAGGGAGCAAT
 241 AACTTCAACCAATGTAATCACCAACAGGGACTGATTTCTATTTATCTTGACTTTATATTAGCCAATTTGAAAGGGTCTGC
 321 TTCACAAGAGGTCATGCCTCTGCAGGGAATCACACACCTTTTGAGAAATATTAATTCTTTTGAATTACAAGAGTGACAGT
 401 TAGTAAACTGCTCCAGGGAAATAAGTGTCATCTTTTAAGAGTCAGTGTATAGCAAACCAAAAGATCACATTTATACCCAA
 481 AGCTTTCTAGTAATCAGAATTTACTTAATTAGAATTGACTCATAAAAATAAAGTTAGTGGACTTTGTCTCCATTTTTAAA
 561 GTATATTTTGTAAATGTTAATTCTGTGGTCCTGTTTATCACAGACTTTGGGTAGCAATAGGAAGAGAGTGTTATTCTGAG
 641 ACAGTGTCGCTGCTTGATATCACTGACTCTTGAAATCACTAACAGTGAACCTCAAATTTGGTTATGATGTTAACAGAGAA
 721 GAAATATTTGAGTCTGGAATATTGAAACTAGCTTTCCTAGAATTCCATTAATAAATGCTGCTCCCCCATATAGTCTTCCC
 801 TTCTGTATAATTAACATAGGTTGTCTCATGGCTTTGATCTTCAAAAGGAAGAGCCTTTTAAAAACATTTGCCAACCTCAA
 881 GAATAAATACTGAAAGTCTTGAAAGTATGGTCATTTCAGCTATTCCAGATTGCTGTCTGTGATTTCTCACATTTTTATTT
 961 GCTGAGAAACATTCAGAAAATTATTCCAAAAATGAAGGTACATTTTCTGTTCTCTCCTAGGTTAGAGAGGGGTGGCCTGG
1041 GGTGCTTCATGAGAAATGTCTTCCTGGATCTGCGGTGGTCAGGTTTGCCTCTGCTTTTGTTCCCTGCCTTTCCGCCACAT
1121 CACACGGCCTCACTGGGCTTCCTACCAGTTTCTCAGAATTACACGCACGACCATCCAAACATTGGCTCCATGCCAGGGCT
1201 GTGACTGCAGCCTGTGTAGGACCATGGGGAGTTCAGAGTCATCATACAAGGCAGCCAAGAACTGCCATAAACACTACACA
1281 GATGGAGGGCATGGGATAGGACAGGAGAGGAGGTGATGTACACTTAGAGGTAACTAAGGCTAGTTTGAAAACCGTGAATT
1361 AAGATATTCTTATCAGTATAAAAACACTGAGATTGCTTACCTCCCAAATTGCTTTATTGTATTAACTCTCATGCTTCAGC
1441 TCTTGGATTTGTTGTTTCTAACTAACATGTCATGTACACCAAACATTTTATAAATCAATCAGTAAATATTTTGTAAGACC
1521 CAAAATCCTGGCATATTGCCAGGTCTGTGGATTTGCCTGTTGGGTGTTGGGATGGGATATCAGAGGAAGAAGCATACAAG
1601 TGGGAAAAACTGTGATTAGAAAGGGAAAAATAGGCATTTCCACAGTACTATTAAGAGAGGCATGATAATGCCATTTTTTT
1681 TCTTCTGTACAACTGGTCAGATTTCAATAAATAATCATTGATGGTTTACAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' aucgaAGGGUUGUCUAUUUACu 5'
               |:||| :| ||||||| 
Target 5' tagaaTTCCATTA-ATAAATGc 3'
 758 - 778 156.00 -9.70
2 
miRNA  3' aucGAAGGGUUG----UC-UAUUUAcu 5'
             :|| |||||    || ||||||  
Target 5' acaTTTGCCAACCTCAAGAATAAATac 3'
 864 - 890 141.00 -7.80
3 
miRNA  3' auCGAAGGGUUGUCUAUUUACu 5'
            || ||| :: | ||||:|| 
Target 5' ctGC-TCCAGGGAAATAAGTGt 3'
 408 - 428 139.00 -9.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31559668 11 COSMIC
COSN31555507 43 COSMIC
COSN30165763 64 COSMIC
COSN30449056 91 COSMIC
COSN31542132 110 COSMIC
COSN6230729 257 COSMIC
COSN15653961 430 COSMIC
COSN31546433 585 COSMIC
COSN26604165 650 COSMIC
COSN28757256 650 COSMIC
COSN14907609 798 COSMIC
COSN31591510 833 COSMIC
COSN26642667 963 COSMIC
COSN28692867 977 COSMIC
COSN28863181 1043 COSMIC
COSN26553698 1078 COSMIC
COSN14441762 1166 COSMIC
COSN20066337 1206 COSMIC
COSN32057939 1398 COSMIC
COSN28198284 1539 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1311992692 6 dbSNP
rs1336365936 12 dbSNP
rs755981874 16 dbSNP
rs779925000 17 dbSNP
rs748410476 19 dbSNP
rs1333907742 24 dbSNP
rs377589344 27 dbSNP
rs1308799901 34 dbSNP
rs1214768118 38 dbSNP
rs1259865655 40 dbSNP
rs142678078 47 dbSNP
rs988081665 48 dbSNP
rs747156666 52 dbSNP
rs762360524 74 dbSNP
rs1324183476 79 dbSNP
rs534506125 80 dbSNP
rs879211185 82 dbSNP
rs1463058458 85 dbSNP
rs765706117 86 dbSNP
rs186902156 87 dbSNP
rs1158561250 96 dbSNP
rs1452181621 100 dbSNP
rs568242673 103 dbSNP
rs1417555752 106 dbSNP
rs535336791 111 dbSNP
rs979171400 111 dbSNP
rs1266194913 122 dbSNP
rs1191417013 130 dbSNP
rs1158763243 134 dbSNP
rs927396789 141 dbSNP
rs1019266849 144 dbSNP
rs965431957 147 dbSNP
rs1207569438 150 dbSNP
rs977156598 152 dbSNP
rs937459401 154 dbSNP
rs1457593857 157 dbSNP
rs556851976 158 dbSNP
rs1025719722 170 dbSNP
rs1262489670 171 dbSNP
rs1239461306 175 dbSNP
rs532470471 178 dbSNP
rs951475874 183 dbSNP
rs1330352020 186 dbSNP
rs1382124849 188 dbSNP
rs1322417087 195 dbSNP
rs1372007782 206 dbSNP
rs984132999 206 dbSNP
rs910074755 208 dbSNP
rs1057215006 209 dbSNP
rs1387776925 218 dbSNP
rs1159696454 219 dbSNP
rs948208331 223 dbSNP
rs190171227 225 dbSNP
rs928201562 226 dbSNP
rs940880728 232 dbSNP
rs183498275 234 dbSNP
rs1284269424 237 dbSNP
rs1253299780 244 dbSNP
rs899420531 245 dbSNP
rs1380762479 246 dbSNP
rs112223911 254 dbSNP
rs1263734297 265 dbSNP
rs994474815 270 dbSNP
rs539050465 273 dbSNP
rs1344258719 275 dbSNP
rs1029115965 276 dbSNP
rs1052538180 281 dbSNP
rs892097164 283 dbSNP
rs1428690993 293 dbSNP
rs946467589 294 dbSNP
rs1008681616 298 dbSNP
rs572422893 301 dbSNP
rs188396396 304 dbSNP
rs888980478 306 dbSNP
rs1315159062 316 dbSNP
rs564821556 320 dbSNP
rs1287343712 321 dbSNP
rs988395152 330 dbSNP
rs1395276551 331 dbSNP
rs758752121 353 dbSNP
rs968406216 356 dbSNP
rs1193282063 358 dbSNP
rs901751207 359 dbSNP
rs1255391403 378 dbSNP
rs993395671 394 dbSNP
rs1261751066 398 dbSNP
rs1025605066 404 dbSNP
rs951362203 409 dbSNP
rs1341776483 411 dbSNP
rs1442339249 417 dbSNP
rs1270784945 422 dbSNP
rs1367728481 426 dbSNP
rs9535193 430 dbSNP
rs1016953597 432 dbSNP
rs1354106872 448 dbSNP
rs937407110 450 dbSNP
rs1415756450 461 dbSNP
rs541250106 465 dbSNP
rs1327305369 478 dbSNP
rs917343889 483 dbSNP
rs751788277 487 dbSNP
rs1167977836 491 dbSNP
rs1413017424 500 dbSNP
rs1474633882 503 dbSNP
rs1415544598 508 dbSNP
rs928117728 513 dbSNP
rs940828451 522 dbSNP
rs193202729 525 dbSNP
rs1161122164 531 dbSNP
rs1439758543 549 dbSNP
rs988386302 554 dbSNP
rs74074527 558 dbSNP
rs1332828799 560 dbSNP
rs542509509 570 dbSNP
rs1234393403 575 dbSNP
rs563982490 581 dbSNP
rs910301949 588 dbSNP
rs781396977 590 dbSNP
rs930926097 594 dbSNP
rs530923679 599 dbSNP
rs552641948 600 dbSNP
rs1391593832 604 dbSNP
rs146945581 606 dbSNP
rs901639610 608 dbSNP
rs1407235606 615 dbSNP
rs1350739319 616 dbSNP
rs748277629 618 dbSNP
rs1229908865 620 dbSNP
rs1040120584 621 dbSNP
rs1193186467 626 dbSNP
rs1047611735 627 dbSNP
rs1344802486 631 dbSNP
rs1220295405 649 dbSNP
rs867795798 650 dbSNP
rs1009397773 653 dbSNP
rs1482094494 655 dbSNP
rs1204534739 658 dbSNP
rs1225800458 663 dbSNP
rs1351914828 672 dbSNP
rs1274657663 678 dbSNP
rs770895956 685 dbSNP
rs1022580221 693 dbSNP
rs564405326 696 dbSNP
rs1156894386 708 dbSNP
rs1402396676 715 dbSNP
rs528612398 715 dbSNP
rs1033574799 719 dbSNP
rs1172787198 721 dbSNP
rs1017006134 734 dbSNP
rs1197582067 741 dbSNP
rs1194335487 752 dbSNP
rs778773764 753 dbSNP
rs1002252629 760 dbSNP
rs1240843610 762 dbSNP
rs917292929 779 dbSNP
rs1173049367 783 dbSNP
rs1035614410 789 dbSNP
rs1448114751 791 dbSNP
rs962478044 804 dbSNP
rs1427185438 805 dbSNP
rs1345282304 807 dbSNP
rs1305226029 808 dbSNP
rs1219279297 826 dbSNP
rs1360601237 827 dbSNP
rs1427198657 831 dbSNP
rs1286641634 833 dbSNP
rs1432725714 843 dbSNP
rs1345728460 855 dbSNP
rs1397086973 856 dbSNP
rs1167398093 870 dbSNP
rs960876368 875 dbSNP
rs1174553565 891 dbSNP
rs1411243273 904 dbSNP
rs988420297 906 dbSNP
rs1417419002 914 dbSNP
rs972251115 920 dbSNP
rs546800284 932 dbSNP
rs11616334 936 dbSNP
rs1257507659 951 dbSNP
rs566762566 952 dbSNP
rs1486884327 962 dbSNP
rs373254567 968 dbSNP
rs1254087960 975 dbSNP
rs3751418 977 dbSNP
rs1160403847 994 dbSNP
rs1380130599 999 dbSNP
rs1418221528 1002 dbSNP
rs1156530502 1004 dbSNP
rs775295799 1009 dbSNP
rs57894843 1010 dbSNP
rs1301762313 1012 dbSNP
rs1306563978 1014 dbSNP
rs1376297330 1014 dbSNP
rs777253561 1015 dbSNP
rs1249542732 1025 dbSNP
rs910186981 1030 dbSNP
rs1341049428 1032 dbSNP
rs1437666497 1040 dbSNP
rs1223219043 1043 dbSNP
rs539038160 1045 dbSNP
rs746316772 1047 dbSNP
rs1375958769 1050 dbSNP
rs1237667014 1051 dbSNP
rs557770151 1064 dbSNP
rs1348874919 1068 dbSNP
rs775794500 1073 dbSNP
rs538319347 1074 dbSNP
rs760273608 1075 dbSNP
rs768393423 1076 dbSNP
rs1040067159 1082 dbSNP
rs929144885 1083 dbSNP
rs1047675063 1090 dbSNP
rs1429234133 1103 dbSNP
rs1266974183 1104 dbSNP
rs768347527 1114 dbSNP
rs1450756209 1119 dbSNP
rs1258609410 1121 dbSNP
rs776091119 1122 dbSNP
rs1177011663 1126 dbSNP
rs887685576 1127 dbSNP
rs1249300882 1132 dbSNP
rs754684674 1134 dbSNP
rs1206000752 1139 dbSNP
rs1318070268 1140 dbSNP
rs1272001627 1150 dbSNP
rs761298661 1152 dbSNP
rs941916539 1166 dbSNP
rs1447576969 1169 dbSNP
rs1187897068 1174 dbSNP
rs1390650807 1182 dbSNP
rs1371410961 1190 dbSNP
rs1300180822 1206 dbSNP
rs1466352860 1210 dbSNP
rs1393747210 1211 dbSNP
rs1162919173 1215 dbSNP
rs533860175 1217 dbSNP
rs1009757735 1246 dbSNP
rs1038334627 1247 dbSNP
rs1419271335 1264 dbSNP
rs1431127735 1268 dbSNP
rs905168120 1271 dbSNP
rs1161053323 1272 dbSNP
rs1389575846 1275 dbSNP
rs530292773 1279 dbSNP
rs1406264227 1290 dbSNP
rs555188723 1295 dbSNP
rs1178516924 1312 dbSNP
rs1457936888 1319 dbSNP
rs1325931070 1321 dbSNP
rs1002711397 1322 dbSNP
rs1211302279 1339 dbSNP
rs1336823158 1355 dbSNP
rs1035097940 1356 dbSNP
rs1238050749 1365 dbSNP
rs1314855299 1366 dbSNP
rs1308890956 1367 dbSNP
rs1363512734 1368 dbSNP
rs7993195 1370 dbSNP
rs1299016734 1373 dbSNP
rs747703182 1385 dbSNP
rs1392076884 1391 dbSNP
rs1021252114 1395 dbSNP
rs3087770 1398 dbSNP
rs532608573 1400 dbSNP
rs1365841112 1404 dbSNP
rs1449778509 1407 dbSNP
rs1242705444 1413 dbSNP
rs1439870518 1413 dbSNP
rs1394147717 1417 dbSNP
rs1191167865 1422 dbSNP
rs1469468971 1424 dbSNP
rs1265024438 1426 dbSNP
rs1357302714 1433 dbSNP
rs1267461242 1435 dbSNP
rs1484872548 1439 dbSNP
rs1262225475 1443 dbSNP
rs979642260 1452 dbSNP
rs563960215 1473 dbSNP
rs1274783727 1475 dbSNP
rs964382769 1476 dbSNP
rs1207979056 1480 dbSNP
rs1317729973 1483 dbSNP
rs1014207032 1486 dbSNP
rs1024294025 1498 dbSNP
rs1299160110 1499 dbSNP
rs1434527505 1501 dbSNP
rs879585786 1512 dbSNP
rs552402229 1520 dbSNP
rs923040272 1522 dbSNP
rs929173861 1523 dbSNP
rs983254714 1524 dbSNP
rs1377661716 1527 dbSNP
rs746993995 1528 dbSNP
rs1191877731 1529 dbSNP
rs1426641371 1542 dbSNP
rs1263820400 1544 dbSNP
rs1217061543 1545 dbSNP
rs779385715 1563 dbSNP
rs1184800015 1565 dbSNP
rs1277942004 1569 dbSNP
rs1213204983 1576 dbSNP
rs909009805 1580 dbSNP
rs941970205 1582 dbSNP
rs1269618064 1584 dbSNP
rs1367446479 1586 dbSNP
rs1044290632 1589 dbSNP
rs1328673549 1590 dbSNP
rs1279455943 1597 dbSNP
rs905221145 1617 dbSNP
rs938008406 1622 dbSNP
rs1056989883 1631 dbSNP
rs952284253 1632 dbSNP
rs1415776561 1644 dbSNP
rs896562242 1645 dbSNP
rs1413416358 1660 dbSNP
rs1402535291 1673 dbSNP
rs185529714 1674 dbSNP
rs986308450 1674 dbSNP
rs1425671978 1680 dbSNP
rs1460087379 1680 dbSNP
rs1386844784 1683 dbSNP
rs1457070637 1686 dbSNP
rs1321728030 1688 dbSNP
rs1391486341 1693 dbSNP
rs1194222697 1701 dbSNP
rs910771684 1706 dbSNP
rs1255086533 1712 dbSNP
rs1021137723 1717 dbSNP
rs1443191036 1720 dbSNP
rs1272610225 1723 dbSNP
rs1194143121 1725 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' aucgaAGGGUUGUCUAUUUACu 5'
               |:||| :| ||||||| 
Target 5' ---aaUUCCAUUA-AUAAAUGc 3'
 		1 - 18
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_030911 | 3UTR | GAGUCUGGAAUAUUGAAACUAGCUUUCCUAGAAUUCCAUUAAUAAAUGCUGCUCCCCCAUAUAGUCUUCCCUUCUGUAUAAUUAACAUAGGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_030911 | 3UTR | AUGCUGCUCCCCCAUAUAGUCUUCCCUUCUGUAUAAUUAACAUAGGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000251108.6 | 3UTR | AAUUCCAUUAAUAAAUGCUGCUCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
128 hsa-miR-4729 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055606 TRUB1 TruB pseudouridine synthase family member 1 2 4
MIRT057816 SLC30A7 solute carrier family 30 member 7 2 2
MIRT061212 MED17 mediator complex subunit 17 2 2
MIRT071507 CALM1 calmodulin 1 2 6
MIRT072873 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 4
MIRT076728 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT087566 YWHAH tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta 2 2
MIRT158563 TNRC6B trinucleotide repeat containing 6B 2 4
MIRT175514 ZBTB33 zinc finger and BTB domain containing 33 2 2
MIRT189775 CDADC1 cytidine and dCMP deaminase domain containing 1 2 2
MIRT198074 H3F3B H3 histone family member 3B 2 4
MIRT216059 IL6ST interleukin 6 signal transducer 2 10
MIRT219256 RREB1 ras responsive element binding protein 1 2 2
MIRT244716 INIP INTS3 and NABP interacting protein 2 2
MIRT271125 ZNF268 zinc finger protein 268 2 4
MIRT299114 CSRNP3 cysteine and serine rich nuclear protein 3 2 2
MIRT303511 NAGK N-acetylglucosamine kinase 2 6
MIRT314695 TMEM167A transmembrane protein 167A 2 4
MIRT334550 AMOTL1 angiomotin like 1 2 4
MIRT441656 DEK DEK proto-oncogene 2 2
MIRT442232 BTD biotinidase 2 2
MIRT442418 LBR lamin B receptor 2 2
MIRT443352 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT444351 KIAA1211 KIAA1211 2 2
MIRT444910 KIAA1841 KIAA1841 2 2
MIRT448407 TNFAIP3 TNF alpha induced protein 3 2 2
MIRT456345 OLIG3 oligodendrocyte transcription factor 3 2 8
MIRT467281 SPNS1 sphingolipid transporter 1 (putative) 2 2
MIRT467925 SLC16A7 solute carrier family 16 member 7 2 2
MIRT468463 SET SET nuclear proto-oncogene 2 2
MIRT469438 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT475947 GXYLT1 glucoside xylosyltransferase 1 2 2
MIRT478069 DNAJB4 DnaJ heat shock protein family (Hsp40) member B4 2 2
MIRT479428 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT484710 RNF11 ring finger protein 11 2 2
MIRT491912 XIAP X-linked inhibitor of apoptosis 2 2
MIRT493551 HSPA5 heat shock protein family A (Hsp70) member 5 2 2
MIRT496126 ARF6 ADP ribosylation factor 6 2 2
MIRT500793 TLK1 tousled like kinase 1 2 6
MIRT504649 RPL9 ribosomal protein L9 2 6
MIRT513847 KCTD15 potassium channel tetramerization domain containing 15 2 4
MIRT519806 ZMYM2 zinc finger MYM-type containing 2 2 4
MIRT521156 SENP3 SUMO1/sentrin/SMT3 specific peptidase 3 2 2
MIRT521919 PHIP pleckstrin homology domain interacting protein 2 4
MIRT522402 MYADM myeloid associated differentiation marker 2 4
MIRT526434 PARP15 poly(ADP-ribose) polymerase family member 15 2 4
MIRT526779 DNTTIP2 deoxynucleotidyltransferase terminal interacting protein 2 2 2
MIRT527864 SLC39A14 solute carrier family 39 member 14 2 2
MIRT528063 OLAH oleoyl-ACP hydrolase 2 2
MIRT528640 SENP6 SUMO1/sentrin specific peptidase 6 2 2
MIRT529586 TMEM220 transmembrane protein 220 2 2
MIRT529810 TMLHE trimethyllysine hydroxylase, epsilon 2 2
MIRT531274 PPIL3 peptidylprolyl isomerase like 3 2 2
MIRT531430 MPZL3 myelin protein zero like 3 2 2
MIRT532141 ZNF331 zinc finger protein 331 2 2
MIRT535825 MTFR1L mitochondrial fission regulator 1 like 2 2
MIRT536253 LPP LIM domain containing preferred translocation partner in lipoma 2 2
MIRT537386 FGF2 fibroblast growth factor 2 2 2
MIRT543499 MDM2 MDM2 proto-oncogene 2 4
MIRT543564 RPF2 ribosome production factor 2 homolog 2 4
MIRT544457 KRBOX4 KRAB box domain containing 4 2 2
MIRT544902 DCTPP1 dCTP pyrophosphatase 1 2 2
MIRT545104 RAG1 recombination activating 1 2 2
MIRT546244 TNFRSF21 TNF receptor superfamily member 21 2 2
MIRT548287 FAM3C family with sequence similarity 3 member C 2 4
MIRT549268 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT550479 TMEM241 transmembrane protein 241 2 2
MIRT550657 ZFP37 ZFP37 zinc finger protein 2 2
MIRT551807 ITGA1 integrin subunit alpha 1 2 2
MIRT552582 ZFHX3 zinc finger homeobox 3 2 2
MIRT552671 YY1 YY1 transcription factor 2 4
MIRT553044 USP28 ubiquitin specific peptidase 28 2 2
MIRT553602 TM7SF3 transmembrane 7 superfamily member 3 2 2
MIRT553816 SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein 2 2
MIRT554618 RPS6KA3 ribosomal protein S6 kinase A3 2 2
MIRT556556 LIMS1 LIM zinc finger domain containing 1 2 2
MIRT558290 DUSP8 dual specificity phosphatase 8 2 2
MIRT558487 DBN1 drebrin 1 2 2
MIRT559313 ATXN1 ataxin 1 2 2
MIRT560704 PRPF4B pre-mRNA processing factor 4B 2 2
MIRT562660 ARHGDIA Rho GDP dissociation inhibitor alpha 2 2
MIRT564158 ZNF117 zinc finger protein 117 2 2
MIRT564614 ZNF703 zinc finger protein 703 2 2
MIRT567236 HSPA1B heat shock protein family A (Hsp70) member 1B 2 2
MIRT568753 DDAH1 dimethylarginine dimethylaminohydrolase 1 2 2
MIRT570780 ZNF83 zinc finger protein 83 2 2
MIRT570919 ZNF138 zinc finger protein 138 2 2
MIRT571254 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT573776 PRKAG1 protein kinase AMP-activated non-catalytic subunit gamma 1 2 2
MIRT574670 HNRNPDL heterogeneous nuclear ribonucleoprotein D like 2 2
MIRT609759 TSPAN14 tetraspanin 14 2 2
MIRT613119 EID1 EP300 interacting inhibitor of differentiation 1 2 2
MIRT614384 FGFBP3 fibroblast growth factor binding protein 3 2 2
MIRT625801 MDC1 mediator of DNA damage checkpoint 1 2 2
MIRT634869 CHD4 chromodomain helicase DNA binding protein 4 2 2
MIRT635723 ALKBH4 alkB homolog 4, lysine demethylase 2 2
MIRT636944 LIMS3 LIM zinc finger domain containing 3 2 2
MIRT637010 LIMS3L LIM zinc finger domain containing 4 2 2
MIRT639357 STPG1 sperm tail PG-rich repeat containing 1 2 2
MIRT640995 PROK2 prokineticin 2 2 2
MIRT641343 RAB11FIP1 RAB11 family interacting protein 1 2 2
MIRT641495 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT642076 FUT11 fucosyltransferase 11 2 2
MIRT646837 TLDC1 TBC/LysM-associated domain containing 1 2 2
MIRT648154 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT650020 ADAMTS8 ADAM metallopeptidase with thrombospondin type 1 motif 8 2 2
MIRT650603 HSD3B1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 2 2
MIRT650624 GNB4 G protein subunit beta 4 2 2
MIRT652677 TIGD2 tigger transposable element derived 2 2 2
MIRT652721 TGFBRAP1 transforming growth factor beta receptor associated protein 1 2 2
MIRT654395 RBFOX2 RNA binding protein, fox-1 homolog 2 2 2
MIRT654659 PSPH phosphoserine phosphatase 2 2
MIRT654771 PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 2 2
MIRT655696 NUDT21 nudix hydrolase 21 2 2
MIRT657635 GPRIN3 GPRIN family member 3 2 2
MIRT686214 ZNF267 zinc finger protein 267 2 2
MIRT690315 MRPS30 mitochondrial ribosomal protein S30 2 2
MIRT696323 DCAF15 DDB1 and CUL4 associated factor 15 2 2
MIRT697602 YAP1 Yes associated protein 1 2 2
MIRT702188 LYPD3 LY6/PLAUR domain containing 3 2 2
MIRT703577 FBXO9 F-box protein 9 2 2
MIRT707807 TSPAN6 tetraspanin 6 2 2
MIRT715951 CKAP2L cytoskeleton associated protein 2 like 2 2
MIRT716970 CNOT6 CCR4-NOT transcription complex subunit 6 2 2
MIRT718223 DEFB105B defensin beta 105B 2 2
MIRT718243 DEFB105A defensin beta 105A 2 2
MIRT719815 TXNDC17 thioredoxin domain containing 17 2 2
MIRT722082 SMC2 structural maintenance of chromosomes 2 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miR-4729 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4729 Cisplatin 5460033 NSC119875 approved resistant cell line (W1)
hsa-mir-4729 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-4729 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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