miRTarBase - #MIRT195885


—
pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol DEPDC1   
Synonyms DEP.8, DEPDC1-V2, DEPDC1A, SDP35
Description DEP domain containing 1
Transcript NM_001114120   
Other Transcripts NM_017779   
Expression
Putative miRNA Targets on DEPDC1
3'UTR of DEPDC1
(miRNA target sites are highlighted)		 
>DEPDC1|NM_001114120|3'UTR
   1 CTAACTGAATTAAAAATTATGTAATACTTGTGGAACTTTGATAAATGAAGCCATATCTGAGAATGTAGCTACTCAAAAGG
  81 AAGTCTGTCATTAATAAGGTATTTCTAAATAAACACATTATGTAAGGAAGTGCCAAAATAGTTATCAATGTGAGACTCTT
 161 AGGAAACTAACTAGATCTCAATTGAGAGCACATAACAATAGATGATACCAAATACTTTTTGTTTTTAACACAGCTATCCA
 241 GTAAGGCTATCATGATGTGTGCTAAAATTTTATTTACTTGAATTTTGAAAACTGAGCTGTGTTAGGGATTAAACTATAAT
 321 TCTGTTCTTAAAAGAAAATTTATCTGCAAATGTGCAAGTTCTGAGATATTAGCTAATGAATTAGTTGTTTGGGGTTACTT
 401 CTTTGTTTCTAAGTATAAGAATGTGAAGAATATTTGAAAACTCAATGAAATAATTCTCAGCTGCCAAATGTTGCACTCTT
 481 TTATATATTCTTTTTCCACTTTTGATCTATTTATATATATGTATGTGTTTTTAAAATATGTGTATATTTTATCAGATTTG
 561 GTTTTGCCTTAAATATTATCCCCAATTGCTTCAGTCATTCATTTGTTCAGTATATATATTTTGAATTCTAGTTTTCATAA
 641 TCTATTAGAAGATGGGGATATAAAAGAAGTATAAGGCAATCATATATTCATTCAAAAGATATTTATTTAGCAACTGCTAT
 721 GTGCCTTTCGTTGTTCCAGATATGCAGAGACAATGATAAATAAAACATATAATCTCTTCCATAAGGTATTTATTTTTTAA
 801 TCAAGGGAGATACACCTATCAGATGTTTAAAATAACAACACTACCCACTGAAATCAGGGCATATAGAATCATTCAGCTAA
 881 AGAGTGACTTCTATGATGATGGAACAGGTCTCTAAGCTAGTGGTTTTCAAACTGGTACACATTAGACTCACCCGAGGAAT
 961 TTTAAAACAGCCTATATGCCCAGGGCCTAACTTACACTAATTAAATCTGAATTTTGGGGATGTTGTATAGGGATTAGTAT
1041 TTTTTTTAATCTAGGTGATTCCAATATTCAGCCAACTGTGAGAATCAATGGCCTAAATGCTTTTTATAAACATTTTTATA
1121 AGTGTCAAGATAATGGCACATTGACTTTATTTTTTCATTGGAAGAAAATGCCTGCCAAGTATAAATGACTCTCATCTTAA
1201 AACAAGGTTCTTCAGGTTTCTGCTTGATTGACTTGGTACAAACTTGAAGCAAGTTGCCTTCTAATTTTTACTCCAAGATT
1281 GTTTCATATCTATTCCTTAAGTGTAAAGAAATATATAATGCATGGTTTGTAATAAAATCTTAATGTTTAATGACTGTTCT
1361 CATTTCTCAATGTAATTTCATACTGTTTCTCTATAAAATGATAGTATTCCATTTAACATTACTGATTTTTATTAAAAACC
1441 TGGACAGAAAATTATAAATTATAAATATGACTTTATCCTGGCTATAAAATTATTGAACCAAAATGAATTCTTTCTAAGGC
1521 ATTTGAATACTAAAACGTTTATTGTTTATAGATATGTAAAATGTGGATTATGTTGCAAATTGAGATTAAAATTATTTGGG
1601 GTTTTGTAACAATATAATTTTGCTTTTGTATTATAGACAAATATATAAATAATAAAGGCAGGCAACTTTCATTTGCACTA
1681 ATGTACATGCAATTGAGATTACAAAATACATGGTACAATGCTTTAATAACAAACTCTGCCAGTCAGGTTTGAATCCTACT
1761 GTGCTATTAACTAGCTAGTAAACTCAGACAAGTTACTTAACTTCTCTAAGCCCCAGTTTTGTTATCTATAAAATGAATAT
1841 TATAATAGTACCTCTTTTTAGGATTGCGAGGATTAAGCAGGATAATGCATGTAAAGTGTTAGCACAGTGTCTCACATAGA
1921 ATAAGCACTCTATAAATATTTTACTAGAATCACCTAGGATTATAGCACTAGAAGAGATCTTAGCAAAAATGTGGTCCTTT
2001 CTGTTGCTTTGGACAGACATGAACCAAAACAAAATTACGGACAATTGATGAGCCTTATTAACTATCTTTTCATTATGAGA
2081 CAAAGGTTCTGATTATGCCTACTGGTTGAAATTTTTTAATCTAGTCAAGAAGGAAAATTTGATGAGGAAGGAAGGAATGG
2161 ATATCTTCAGAAGGGCTTCGCCTAAGCTGGAACATGGATAGATTCCATTCTAACATAAAGATCTTTAAGTTCAAATATAG
2241 ATGAGTTGACTGGTAGATTTGGTGGTAGTTGCTTTCTCGGGATATAAGAAGCAAAATCAACTGCTACAAGTAAAGAGGGG
2321 ATGGGGAAGGTGTTGCACATTTAAAGAGAGAAAGTGTGAAAAAGCCTAATTGTGGGAATGCACAGGTTTCACCAGATCAG
2401 ATGATGTCTGGTTATTCTGTAAATTATAGTTCTTATCCCAGAAATTACTGCCTCCACCATCCCTAATATCTTCTAATTGG
2481 TATCATATAATGACCCACTCTTCTTATGTTATCCAAACAGTTATGTGGCATTTAGTAATGGAATGTACATGGAATTTCCC
2561 ACTGACTTACCTTTCTGTCCTTGGGAAGCTTAAACTCTGAATCTTCTCATCTGTAAAATGTGAATTAAAGTATCTACCTA
2641 ACTGAGTTGTGATTGTAGTGAAAGAAAGGCAATATATTTAAATCTTGAATTTAGCAAGCCCACGCTTGATTTTTATGTCC
2721 TTTCCTCTTGCCTTGTATTGAGTTTAAGATCTCTACTGATTAAAACTCTTTTGCTATCAAAAAAAAAAAAAAAAAAAAAA
2801 A
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' agGACCUACGUUUAAAAu 5'
            |||| || ||||||| 
Target 5' taCTGGTTG-AAATTTTt 3'
 2100 - 2116 159.00 -9.50
2 
miRNA  3' aggACCUACG--UUUAAAAu 5'
             || :|||  ||||||| 
Target 5' tgaTGTGTGCTAAAATTTTa 3'
 253 - 272 153.00 -5.70
3 
miRNA  3' agGACCU-ACGUUUAAAAu 5'
            |||||  | ||||| | 
Target 5' acCTGGACAGAAAATTATa 3'
 1438 - 1456 124.00 -10.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31511436 19 COSMIC
COSN31576374 27 COSMIC
COSN31592708 43 COSMIC
COSN30151173 80 COSMIC
COSN31529897 85 COSMIC
COSN31562506 122 COSMIC
COSN31523210 133 COSMIC
COSN31520807 217 COSMIC
COSN6042298 217 COSMIC
COSN29326755 1073 COSMIC
COSN27794052 1075 COSMIC
COSN16184101 1336 COSMIC
COSN6465676 1408 COSMIC
COSN8309852 1633 COSMIC
COSN1453051 1645 COSMIC
COSN32063840 1647 COSMIC
COSN20094933 1730 COSMIC
COSN25304316 1963 COSMIC
COSN7277907 2057 COSMIC
COSN8505252 2310 COSMIC
COSN28476449 2499 COSMIC
COSN31959473 2684 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs774608716 4 dbSNP
rs781504455 7 dbSNP
rs199780991 10 dbSNP
rs943915550 15 dbSNP
rs1345652163 19 dbSNP
rs1239210515 22 dbSNP
rs1182898875 27 dbSNP
rs374281152 30 dbSNP
rs370272621 32 dbSNP
rs1205847825 33 dbSNP
rs1461969113 35 dbSNP
rs758224175 39 dbSNP
rs764994928 42 dbSNP
rs757852645 45 dbSNP
rs750680947 46 dbSNP
rs377757010 47 dbSNP
rs1347922799 61 dbSNP
rs929663140 65 dbSNP
rs752047357 72 dbSNP
rs1352744352 73 dbSNP
rs973822384 75 dbSNP
rs35067316 79 dbSNP
rs1245322774 82 dbSNP
rs937502244 87 dbSNP
rs1169838170 98 dbSNP
rs1231327895 101 dbSNP
rs1478083060 103 dbSNP
rs927491456 107 dbSNP
rs981635272 111 dbSNP
rs1174054148 112 dbSNP
rs1408015572 114 dbSNP
rs1195860062 121 dbSNP
rs187381505 126 dbSNP
rs547743206 145 dbSNP
rs1333568298 146 dbSNP
rs1443768416 148 dbSNP
rs1279595059 150 dbSNP
rs988785476 154 dbSNP
rs553707743 156 dbSNP
rs535098066 167 dbSNP
rs1033088818 175 dbSNP
rs1198597911 177 dbSNP
rs1198344147 178 dbSNP
rs142787595 181 dbSNP
rs34349147 182 dbSNP
rs1182669293 183 dbSNP
rs1018491060 192 dbSNP
rs1241982779 195 dbSNP
rs538609171 196 dbSNP
rs375420726 203 dbSNP
rs569724124 210 dbSNP
rs1339568422 213 dbSNP
rs1312963079 215 dbSNP
rs1008076511 221 dbSNP
rs1397608725 232 dbSNP
rs1374421993 235 dbSNP
rs1329005173 239 dbSNP
rs550025262 246 dbSNP
rs1466084780 251 dbSNP
rs1046991643 257 dbSNP
rs530346730 263 dbSNP
rs993781159 270 dbSNP
rs1169794596 271 dbSNP
rs1341789905 272 dbSNP
rs182228055 287 dbSNP
rs568025632 292 dbSNP
rs1038081030 295 dbSNP
rs1224746745 298 dbSNP
rs1270994022 299 dbSNP
rs937052110 305 dbSNP
rs763041774 318 dbSNP
rs1425734181 328 dbSNP
rs1046287939 339 dbSNP
rs1371108606 339 dbSNP
rs1168138757 342 dbSNP
rs1364505459 351 dbSNP
rs950262004 352 dbSNP
rs1178341610 369 dbSNP
rs913453808 374 dbSNP
rs989099302 394 dbSNP
rs1458657999 404 dbSNP
rs1240563071 415 dbSNP
rs1382130474 416 dbSNP
rs1207607762 425 dbSNP
rs957358501 441 dbSNP
rs925906494 445 dbSNP
rs1283839657 450 dbSNP
rs547706534 450 dbSNP
rs1350973292 456 dbSNP
rs1248303764 460 dbSNP
rs1292550356 465 dbSNP
rs1490508032 468 dbSNP
rs1308261078 473 dbSNP
rs1447234996 476 dbSNP
rs1204468784 496 dbSNP
rs190001012 497 dbSNP
rs564879841 498 dbSNP
rs1259491118 502 dbSNP
rs1448531528 510 dbSNP
rs1379097650 514 dbSNP
rs752914529 523 dbSNP
rs1384258007 531 dbSNP
rs1385198029 539 dbSNP
rs185761375 543 dbSNP
rs1486775469 556 dbSNP
rs576068636 557 dbSNP
rs1019047934 570 dbSNP
rs955264382 590 dbSNP
rs1426792943 591 dbSNP
rs1378694021 594 dbSNP
rs1158486581 598 dbSNP
rs1380909253 603 dbSNP
rs1454762475 605 dbSNP
rs1025507118 610 dbSNP
rs745845809 612 dbSNP
rs1236896122 613 dbSNP
rs898420847 620 dbSNP
rs1451486634 622 dbSNP
rs1267453273 640 dbSNP
rs866224332 644 dbSNP
rs114969483 662 dbSNP
rs542916803 675 dbSNP
rs199513384 676 dbSNP
rs1355543420 683 dbSNP
rs1272815584 688 dbSNP
rs1418015170 690 dbSNP
rs537899313 694 dbSNP
rs1366093790 696 dbSNP
rs759320372 699 dbSNP
rs1454735384 701 dbSNP
rs1176224117 710 dbSNP
rs1404349591 717 dbSNP
rs892004591 719 dbSNP
rs757165865 721 dbSNP
rs746646430 729 dbSNP
rs138746932 730 dbSNP
rs553916883 740 dbSNP
rs1309198350 743 dbSNP
rs936205985 753 dbSNP
rs533788792 764 dbSNP
rs12062826 768 dbSNP
rs1297790607 771 dbSNP
rs943408711 776 dbSNP
rs911952198 777 dbSNP
rs1263401544 788 dbSNP
rs1480086038 793 dbSNP
rs1175018706 794 dbSNP
rs1252021976 801 dbSNP
rs1420498394 805 dbSNP
rs1410653514 818 dbSNP
rs558739789 824 dbSNP
rs1171123438 833 dbSNP
rs1477989236 836 dbSNP
rs987606740 838 dbSNP
rs955379989 840 dbSNP
rs1481635579 855 dbSNP
rs1177551882 857 dbSNP
rs1354205913 861 dbSNP
rs538762762 893 dbSNP
rs1300026660 896 dbSNP
rs1378710691 905 dbSNP
rs1201026610 907 dbSNP
rs74361995 912 dbSNP
rs79475363 917 dbSNP
rs1343516599 943 dbSNP
rs758072128 952 dbSNP
rs1476541421 953 dbSNP
rs549788523 957 dbSNP
rs536529598 961 dbSNP
rs1252625581 962 dbSNP
rs151136557 969 dbSNP
rs1216922734 978 dbSNP
rs1489037870 984 dbSNP
rs972547396 991 dbSNP
rs962572147 993 dbSNP
rs181251546 994 dbSNP
rs1276253621 996 dbSNP
rs1199657926 1002 dbSNP
rs1016822633 1006 dbSNP
rs902013897 1007 dbSNP
rs1276525011 1019 dbSNP
rs35680524 1020 dbSNP
rs1225478632 1022 dbSNP
rs1373799493 1025 dbSNP
rs1338562779 1027 dbSNP
rs1214801120 1047 dbSNP
rs1001587664 1048 dbSNP
rs1363685699 1048 dbSNP
rs1293954617 1064 dbSNP
rs549951969 1072 dbSNP
rs1277594234 1080 dbSNP
rs1361006480 1082 dbSNP
rs905554372 1083 dbSNP
rs1342384129 1094 dbSNP
rs1400851658 1094 dbSNP
rs1244656065 1106 dbSNP
rs1288931423 1121 dbSNP
rs1347114331 1123 dbSNP
rs1490999128 1143 dbSNP
rs1380884131 1144 dbSNP
rs1024473623 1146 dbSNP
rs149035296 1160 dbSNP
rs891561274 1168 dbSNP
rs547965238 1186 dbSNP
rs1179170870 1187 dbSNP
rs1161809778 1196 dbSNP
rs904758596 1199 dbSNP
rs1464482439 1211 dbSNP
rs1039317469 1212 dbSNP
rs1165403007 1213 dbSNP
rs943358365 1218 dbSNP
rs1428419576 1223 dbSNP
rs911936177 1224 dbSNP
rs1365535289 1234 dbSNP
rs527836954 1262 dbSNP
rs1312359026 1270 dbSNP
rs776420064 1275 dbSNP
rs1476229096 1285 dbSNP
rs188689885 1286 dbSNP
rs551159195 1294 dbSNP
rs1186639315 1305 dbSNP
rs1269143658 1307 dbSNP
rs183906551 1325 dbSNP
rs1181974357 1335 dbSNP
rs962538755 1339 dbSNP
rs1196700136 1346 dbSNP
rs1016791819 1355 dbSNP
rs1176645122 1360 dbSNP
rs1317167552 1361 dbSNP
rs867445060 1362 dbSNP
rs1219319263 1366 dbSNP
rs1364416294 1372 dbSNP
rs980084250 1373 dbSNP
rs1161094357 1380 dbSNP
rs760633511 1385 dbSNP
rs1389090675 1386 dbSNP
rs1469035759 1387 dbSNP
rs1334294563 1392 dbSNP
rs1384477434 1393 dbSNP
rs1448165405 1398 dbSNP
rs1924543 1408 dbSNP
rs750968413 1412 dbSNP
rs1447811336 1417 dbSNP
rs1023942546 1418 dbSNP
rs1269236924 1422 dbSNP
rs1339049001 1439 dbSNP
rs1323283541 1445 dbSNP
rs1202107000 1450 dbSNP
rs771616902 1467 dbSNP
rs752544239 1475 dbSNP
rs1443182357 1480 dbSNP
rs542679695 1481 dbSNP
rs529194579 1484 dbSNP
rs1231232267 1503 dbSNP
rs1468595460 1508 dbSNP
rs560235215 1510 dbSNP
rs1412547010 1516 dbSNP
rs56171525 1516 dbSNP
rs1479999790 1522 dbSNP
rs540528764 1523 dbSNP
rs577728750 1527 dbSNP
rs1403958607 1531 dbSNP
rs1411131865 1535 dbSNP
rs374133868 1536 dbSNP
rs1411238181 1537 dbSNP
rs1352255099 1542 dbSNP
rs1031448662 1548 dbSNP
rs747661241 1552 dbSNP
rs1289542261 1553 dbSNP
rs192522315 1558 dbSNP
rs1222101420 1565 dbSNP
rs1000353839 1566 dbSNP
rs904727589 1571 dbSNP
rs1214195031 1582 dbSNP
rs1271065908 1582 dbSNP
rs1244763590 1585 dbSNP
rs1039691360 1588 dbSNP
rs1252488849 1599 dbSNP
rs1176471947 1606 dbSNP
rs545076451 1607 dbSNP
rs1197074269 1619 dbSNP
rs772019792 1622 dbSNP
rs932188885 1630 dbSNP
rs4926341 1633 dbSNP
rs989625838 1636 dbSNP
rs1309300319 1643 dbSNP
rs957134936 1645 dbSNP
rs1365558931 1647 dbSNP
rs929324572 1654 dbSNP
rs1305407187 1656 dbSNP
rs1287764541 1658 dbSNP
rs61049705 1665 dbSNP
rs1227076739 1675 dbSNP
rs1268658427 1676 dbSNP
rs977152206 1677 dbSNP
rs941188304 1681 dbSNP
rs971472603 1682 dbSNP
rs59981463 1683 dbSNP
rs1013261668 1701 dbSNP
rs980352134 1718 dbSNP
rs894374047 1720 dbSNP
rs200738233 1730 dbSNP
rs35430029 1731 dbSNP
rs148004887 1732 dbSNP
rs371082903 1732 dbSNP
rs1027468181 1735 dbSNP
rs1240036537 1739 dbSNP
rs1444945909 1744 dbSNP
rs558221877 1752 dbSNP
rs969974941 1758 dbSNP
rs189429345 1759 dbSNP
rs1422140244 1761 dbSNP
rs897948266 1768 dbSNP
rs1036854138 1772 dbSNP
rs1165524564 1786 dbSNP
rs1392019538 1797 dbSNP
rs992489623 1799 dbSNP
rs955720879 1801 dbSNP
rs1031419077 1802 dbSNP
rs999986728 1825 dbSNP
rs944769639 1839 dbSNP
rs1405604015 1846 dbSNP
rs1314540097 1847 dbSNP
rs1386700557 1851 dbSNP
rs554132223 1856 dbSNP
rs751778755 1867 dbSNP
rs890462563 1868 dbSNP
rs1050421779 1878 dbSNP
rs1204377186 1886 dbSNP
rs1438825337 1889 dbSNP
rs1380882419 1890 dbSNP
rs1017736566 1895 dbSNP
rs1188805855 1897 dbSNP
rs534526782 1898 dbSNP
rs1442263753 1907 dbSNP
rs748835138 1908 dbSNP
rs1178908924 1916 dbSNP
rs571722774 1917 dbSNP
rs1487435655 1921 dbSNP
rs552031895 1926 dbSNP
rs1220840261 1929 dbSNP
rs531419092 1930 dbSNP
rs1490591682 1935 dbSNP
rs890689561 1945 dbSNP
rs1294192476 1950 dbSNP
rs1336337168 1951 dbSNP
rs1238480958 1964 dbSNP
rs1397895738 1968 dbSNP
rs114500445 1973 dbSNP
rs915481825 1976 dbSNP
rs1353480301 1984 dbSNP
rs1308099511 1989 dbSNP
rs1053989136 1991 dbSNP
rs1330963151 1996 dbSNP
rs1209064033 2001 dbSNP
rs116436345 2019 dbSNP
rs56150903 2023 dbSNP
rs1256228113 2025 dbSNP
rs942086648 2026 dbSNP
rs540997097 2027 dbSNP
rs971140480 2030 dbSNP
rs1367102392 2038 dbSNP
rs528841643 2039 dbSNP
rs1295926052 2040 dbSNP
rs74083708 2045 dbSNP
rs17097400 2049 dbSNP
rs1160946131 2051 dbSNP
rs958644589 2053 dbSNP
rs1027520580 2061 dbSNP
rs1389682127 2061 dbSNP
rs867834912 2064 dbSNP
rs1397016132 2065 dbSNP
rs1480788256 2065 dbSNP
rs1228821437 2068 dbSNP
rs754444622 2068 dbSNP
rs776766168 2070 dbSNP
rs1044181084 2074 dbSNP
rs968427794 2075 dbSNP
rs1256156608 2082 dbSNP
rs1017789887 2085 dbSNP
rs1214754664 2086 dbSNP
rs1009410500 2090 dbSNP
rs1007706436 2092 dbSNP
rs558830553 2101 dbSNP
rs890524001 2104 dbSNP
rs1050882979 2125 dbSNP
rs533285544 2126 dbSNP
rs1427626015 2128 dbSNP
rs75750431 2129 dbSNP
rs12757862 2130 dbSNP
rs1030572670 2131 dbSNP
rs12737443 2132 dbSNP
rs894099086 2134 dbSNP
rs1309898657 2145 dbSNP
rs1372382028 2146 dbSNP
rs1218382348 2148 dbSNP
rs1302388590 2149 dbSNP
rs1365233820 2158 dbSNP
rs1388238042 2160 dbSNP
rs1311011468 2176 dbSNP
rs1054042853 2179 dbSNP
rs746732440 2180 dbSNP
rs924116765 2203 dbSNP
rs1343574912 2205 dbSNP
rs1346878225 2206 dbSNP
rs538394007 2215 dbSNP
rs1245427351 2216 dbSNP
rs1399024114 2218 dbSNP
rs1489682064 2218 dbSNP
rs1373734247 2240 dbSNP
rs949863160 2242 dbSNP
rs778404878 2245 dbSNP
rs1290481824 2246 dbSNP
rs576616183 2253 dbSNP
rs118038399 2254 dbSNP
rs920223832 2256 dbSNP
rs1170624708 2263 dbSNP
rs1390858591 2265 dbSNP
rs185556744 2278 dbSNP
rs961961085 2279 dbSNP
rs1348001551 2283 dbSNP
rs1470889214 2292 dbSNP
rs1015191618 2297 dbSNP
rs1431561418 2298 dbSNP
rs1045586070 2303 dbSNP
rs1360906404 2306 dbSNP
rs1432432702 2316 dbSNP
rs142922790 2318 dbSNP
rs1477658719 2322 dbSNP
rs752821250 2341 dbSNP
rs1244535422 2343 dbSNP
rs1262674675 2343 dbSNP
rs1008716235 2349 dbSNP
rs193222816 2353 dbSNP
rs1323993200 2355 dbSNP
rs1482462137 2355 dbSNP
rs954990093 2362 dbSNP
rs1029077343 2369 dbSNP
rs1255726586 2375 dbSNP
rs1222834086 2383 dbSNP
rs1260492795 2384 dbSNP
rs895678726 2386 dbSNP
rs1056992189 2390 dbSNP
rs996222840 2396 dbSNP
rs778256388 2398 dbSNP
rs1053757506 2426 dbSNP
rs573918527 2427 dbSNP
rs902746345 2436 dbSNP
rs947065150 2445 dbSNP
rs554162074 2450 dbSNP
rs1047029802 2468 dbSNP
rs1217477147 2480 dbSNP
rs1307765376 2482 dbSNP
rs1388861037 2491 dbSNP
rs910286657 2495 dbSNP
rs1281901814 2497 dbSNP
rs949571401 2500 dbSNP
rs895595032 2509 dbSNP
rs986316614 2520 dbSNP
rs376976950 2524 dbSNP
rs954896413 2526 dbSNP
rs754570028 2530 dbSNP
rs1210920615 2531 dbSNP
rs1055473506 2532 dbSNP
rs1269044284 2544 dbSNP
rs1208175174 2549 dbSNP
rs1393891922 2551 dbSNP
rs868096134 2558 dbSNP
rs1473776372 2563 dbSNP
rs1030416003 2583 dbSNP
rs1411074141 2585 dbSNP
rs1378201506 2589 dbSNP
rs1471504169 2595 dbSNP
rs937058897 2597 dbSNP
rs1412315638 2600 dbSNP
rs962248431 2613 dbSNP
rs1337088073 2614 dbSNP
rs1331705956 2615 dbSNP
rs750919393 2618 dbSNP
rs1448052245 2619 dbSNP
rs1298128393 2623 dbSNP
rs781715743 2625 dbSNP
rs1349131923 2631 dbSNP
rs1230669495 2632 dbSNP
rs1398025015 2636 dbSNP
rs1323171267 2637 dbSNP
rs768135559 2637 dbSNP
rs1217689728 2642 dbSNP
rs1465146791 2644 dbSNP
rs1443093565 2665 dbSNP
rs1203852634 2669 dbSNP
rs1006165027 2670 dbSNP
rs905226390 2674 dbSNP
rs1184146870 2679 dbSNP
rs1252266975 2686 dbSNP
rs1477535677 2687 dbSNP
rs1023718519 2695 dbSNP
rs1172843587 2702 dbSNP
rs1414575541 2703 dbSNP
rs1167382608 2704 dbSNP
rs1369299955 2705 dbSNP
rs920276093 2706 dbSNP
rs445045 2707 dbSNP
rs896575612 2709 dbSNP
rs1056957296 2724 dbSNP
rs1187752403 2725 dbSNP
rs751870486 2727 dbSNP
rs940629017 2731 dbSNP
rs1276857755 2732 dbSNP
rs578222839 2735 dbSNP
rs907774695 2739 dbSNP
rs987747368 2745 dbSNP
rs954568890 2750 dbSNP
rs1197504680 2751 dbSNP
rs1272552669 2752 dbSNP
rs558374317 2755 dbSNP
rs1207214073 2756 dbSNP
rs1252375938 2770 dbSNP
rs1043020987 2771 dbSNP
rs1196432141 2773 dbSNP
rs974835366 2774 dbSNP
rs958083915 2775 dbSNP
rs1478139985 2776 dbSNP
rs1187452964 2781 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293
Disease 55635.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "HITS-CLIP data was present in GSM714642. RNA binding protein: AGO2. Condition:completeT1 "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 55635.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065670. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM714642
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000456315.2 | 3UTR | CUAAAAUUUUAUUUACUUGAAUUUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000456315.2 | 3UTR | CUAAAAUUUUAUUUACUUGAAUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000456315.2 | 3UTR | CUAAAAUUUUAUUUACUUGAAUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000456315.2 | 3UTR | UGUGCUAAAAUUUUAUUUACUUGAAUUUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000456315.2 | 3UTR | CUAAAAUUUUAUUUACUUGAAUUUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1065670
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / 4-thiouridine, 3_ML_LG
Location of target site ENST00000456315.2 | 3UTR | CUAAAAUUUUAUUUACUUGAAUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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