miRTarBase - #MIRT200250


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pre-miRNA Information
pre-miRNA hsa-mir-3607   
Genomic Coordinates chr5: 86620497 - 86620575
Description Homo sapiens miR-3607 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3607-3p
Sequence 51| ACUGUAAACGCUUUCUGAUG |70
Evidence Experimental
Experiments Illumina
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol EVI5   
Synonyms EVI-5, NB4S
Description ecotropic viral integration site 5
Transcript NM_005665   
Expression
Putative miRNA Targets on EVI5
3'UTR of EVI5
(miRNA target sites are highlighted)		 
>EVI5|NM_005665|3'UTR
   1 CCATCACTGTGACCTAGACTATGGATTTATTTAAGGGATCAGTTATCATATGATTAGGGCTTTTTGGAAATAATTTGTTT
  81 CATATGTACATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTTACAGTCTTATCT
 161 GCCTTTTTATCTTTGCCAAATCTTTACCACTGATTTACCATTGCCATAAAGTAGACTGGTATATGGTTAATGTGTAAAAC
 241 AAGGTTCTAACAGTATTACTGAATATTAATGTTTCTTGTTTAGAAAATGCAACTATATCTATATGTGGGAACCATTCTGA
 321 AGTTCAAAACTATGGAAAATTGAATTTTCTTCAGACAAAACTGCTCTTGTGCAATATTTTATGCTCAGTGAGCAAATTGT
 401 GTATTTATGTTTATCAATTTGTTCTCAAGGTGGCTGTCTACAGACATTTGACCAAGACATACATCTGATTTACCTTGTGT
 481 TTTTTTTTTTATTGTTGTTTTTTTTTTTAAGACAGAGATTCAGTCTGTCACCCAGGCTGGAGTGCTGTGGTGTGATCTTA
 561 GCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCAATTTTCCTGCCTCAGCCTCCCGAGTACCTGGGACTATATGTGCGCA
 641 CCACCACGCCTGGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCTGGGCTGGTCTCGAACTCCTA
 721 ACCTCAAGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCACCCAGCCTACCTTGTC
 801 TGTTTGTGTCTGGGAGGTTTTTTTTTTCTATTTTTATTTTTTCATGAAAATTATTGGTGGGCCACTGAAAGTCCCCACAC
 881 ACAAAGCCTTTATTCTATATAATTTTATAAACACAAATTCATGATTATCTGTTTTGAGAGTTTTAAGTTTTGTTTTAATG
 961 TTTAACTTTTATGTGCATATGATGCTTCCATGTGTTGGTTACTAGAGTAGTAGGTTAACTACAGACATACTGTTTTGTTT
1041 GTACATATTTATAAATCTGTACCACCTAACATTGAACATCATTTTATATGAAGAACATACATGTTGCAAAATGACTGCTT
1121 TCAGCATCTAACAGGACTTCTGTAAATAATAGGTTAAAAGTTAAAAATAAAACACTAATGTTTTAAGAGCTTTAGTATTT
1201 TGCTTAGCATTCAATACTAGCAGATTCATAACTGATGCCTGTTCAAAAACACTGTTGGTGGAATCTTTTATTTCATGTGT
1281 ATGTAACTACTAAATTTTTCATGACTGAAGAGGTTATAGCACATATTAGTTAGTGCTAATATTCTACTGAATATAATTTA
1361 AGCAATGGGCTAAGGTCCAAGAAACATAGCAATTATATCTACAAATAATCTATTAACATGATCTTCAGAATCTCTAGTTT
1441 TTGTTCTATAGATAAAGCCATAAGAATCCTTTCCTACCAGTTTTTCCTATATCATTTAGATATTATTTCCTAGAAAACAG
1521 GATGCCTGTCACTGATAAGTTAGAGAAAACACCCAAATTATACTTGCACTATGGAAAGACGACATGAATATGTTGACTGG
1601 GTACTTTCTACTCTCATTTTTGTTAGCCTATGAAAAAAAAAACATTTTGTTAACCTATGGAAAAAGCCTTGGAAGAGAAA
1681 AGTAGAATTCAGTATGTATGGAGGCACAGTTTTGCACAGTATGTTGCATGCGGCAAAAAAAAAAATATGAAATAGAGTAG
1761 AAGAGATAAAAGTAGTTTTCTGTCAAAAACTAGGAGTTAAGCCTTCAGGTACGTTGTGGACTAGGCTTTCCAGCAAGGTT
1841 TTTGTAGCTATTTGCTTGCCTGAGAAATGAAATTGAAAACATACCCCTGCGTGTCTGTCCTTAACACCAGGCTAAATTCT
1921 GGTGGTTAAATAACTTATCTGTGGTTACAAGCTAGTAAGTAGCAGAGCCAAGATTTTTTTTAATATAGAGACAGGTGTCT
2001 CACTGTGTTGTCCAGGCTGGTCTTGAACTCCTGGCCTCAAGTGGTCCTCCTGCCTCAGCCTCCCAAAGTGTGGGGATTAC
2081 AGGTGCGAGCTACTGCTCCCAGCAAGAGCCAAGATTTTAACCTAGATCTCCCTAACACCAAAGCTTTTGAAAGGGTTCAG
2161 CTGAAGAATTTCTCAATTCTCTGTTTTGTTTTGTTTTTATTTTTGTTTTTTGAGATGAAGTCTCACTGCACTCAGGCTGG
2241 AGTGCAGTGGTACGATCTTGGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCTCCCAAGTAG
2321 CTGGGACTACAGGTGCACGCCACCACAACTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCGCTATGTTGGCCAG
2401 GCTGATCTCAAACTTCTGACCTCAGGTGATCCACCCACTTTGACCTCCCAAAGTGCTGGGATTACTAGACGTAAGCCACC
2481 ACACCTGGCAATTCCCTGCTTTTTTGACAACATAATTTAAATGAATTTGATTTAAATGTTTCCTGAATATATATACAGAT
2561 AGATAGATGAGTATCAACACTTACAAGCTCTACACAGTCTGTGAGTGTAGATACTACTTACTCGTAGGATTGTCTTGTGC
2641 TTTGGGGATTTTTGTTCGGAGTTCTATACTATCAGCCCAGAAAGCTATCAATGTCCAAGTGAAGTGAGATGATGCATGGC
2721 CACATTATTGCTTTGACCCTCACATCAAGAAATCTGAATGATCTGGACCAGGGGTCAGCAAAGTGCAGCCTACAAGCTAT
2801 TGCAGTCAGCTGCCAGTTTTTACTTTTTTAAATAGTTGGGAAAAAAATTCCAAAGACTGATATTTTGTGTCACATGAAAA
2881 TTATATGAAATTCAAATTGCAGTGTCCATAAGTAAAGTTTTATTGGGGCACACCCATGCTCACCCTTTTAAATATTGTGT
2961 ATGGCCGCTTTGTGCTACAGTAGCAGAGTTGAGTCATTGCAAGGGAGACCATATGGCCCAGGTAGCCTAAAATATTTATC
3041 TGATCCTTTACAGAAAAAGTTTGCTAACCCTTGATAACAGATACTCTAAAATGCAGGTTTTTCTTCTTCAATTTAGCTCA
3121 GTGGTAGGTCAAATTGTTTGCTTTTGCTATTAAGCTTATGATTTGGAAACGTAAAATTTCATGGTGGATATTATAATCAG
3201 AACTATTCAAAAGGGAAAACATGCCAGCCATTTTATATGATGAAGTCTCTTATTCCATAGAAAACTGTAGAAAGATATCT
3281 GTATCTTTGGAGAAGGAGAAAGAAAGGAAAGAACTCCAGAATCCCATCACTGTTCTTTAAAGCATGCATCACAGACCTTT
3361 AAGAGTATGCTTTATTGAGTAAAGGTTATAGTTTGACTTTAAGATAAGAAATTTTCTAGAATCATGTTTGAATTCTAAAC
3441 GTTGATATTCTTAAGTACCATTTCTGATTAGGAATTAGGTGTTAAAAGAATCATGGTAAGGAAACCTTAATCCGTTGAAA
3521 CTCTTGTAATTTGGACAACAAAAAACTAGAAATAACACTCTTTTCTTTGAAGATCTGATTCAAATACACCTTAGAAGAGT
3601 TTAAAATCTCCCAGGCCTTTAGGATGCAATAGGATATTATGCCTTGGTTTGACTCCTTTTCATTCAAATTAATGTAAGTA
3681 TGTTGTTCAAGACTTTGAAGCATTGAACAATGTTCTCGATGAATTTTATTTAATTACTGACATTTTGTGATATTTGAATG
3761 TTATTAAGTTAAACACTTAGAGTTGAGTATATTCAGGGGAGAAAAGTGAATGAAATGACTCATAATAAGAAAGCTTGCTC
3841 CCTTGGGACAGTTACCTTCCTGGTGTCATTGCCATCCTGGGTTGACAAGCTGAGAGTAGAGGATACAAGTGATGTGAATA
3921 AAATGGAAATTGCATTGAGTTAATGAAACAGACACTTTTAGATCAAGAAAACACTTCAACAGCCTTTTTAGAAATTGGCA
4001 CACTCCTATAGTCCCACCTACTCAAGAGGCTGAGGCAGGAGGATCACTAGAGTACAGGAGTTTGGGGCTGTAGTGTGTAA
4081 TGATCACACCTGTGAAAGAATAACCACTGCACTCCAACCTGGGCAACATGGCAAGACCCTGTCTCTTTAAAAAAAAAAAA
4161 AATCCTGGGAAAAGAAGTCAAAGATGTAATTTTACACAATTTCTGCCCCCACCGTCTTTTTTGTTTGTTTGTTTGTTTGT
4241 TTGTTTTTTGGCTAGATACTAGGTATTCAGTGTTTGCTGAGATGACAGGTTTCTACTAATCAGCCAGTTATTTGGGAAGG
4321 AGAAAAACTTTTTCTCAATTCTGAACATGATGCAGCTTGTTAACTCTCCAGATAGTGCCTTTGATTGAAAATAAGGTCTA
4401 CACCTTTTTAAGTATATTATTTCTGACATCGTAAGAAATAATTTAGTTCCTTATTCTCATTTATCTTTTATATAATGTAC
4481 TGTAATATTCAGGTTTAAAGTAAAATAAGTATATGAATTATATTTTGGTAAAACTGTTTCATGACCAGCTTGATTAATGT
4561 ATATTAACATACCAGACATTGACAGCGAACATTTCATGAAATCAGTTATTTACTTACCAAAACAATGAGTTTTAGCTTGA
4641 AAGTTACTGCTGCTCTATTATTAACAAAACTAAGTTTTAAAAATTAATTTTAATTCTACTGAAGTTTAATTTCTGGTTAA
4721 AGGTATAGTGGATGCTATTTATGATCCAAGTTTTTACATCACATCCATTGATCTGCCTATCCCTTCTTTTTACTCCAAAG
4801 AGGAGATGATAGAATAATACATTCAGTATACTACCAAGAAGCAAAGTTATAATGTGTTTCATTTTGCTATTGGAATTTTT
4881 TATTGTAACATTGTATGATAACCTGAAATGTTTACTTGTGCCTTTTCTTTAAACAATTAAAGTTTTCCATTTTATAAGAA
4961 AAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' guAGUCUUUCGCAAAUGUCa 5'
            || |  | | ||||||| 
Target 5' taTCTG--ATCCTTTACAGa 3'
 3037 - 3054 146.00 -8.10
2 
miRNA  3' guaGUCUUUCGCAAAUGUCa 5'
             :| | |   ||||||| 
Target 5' ataTATATATATTTTACAGt 3'
 134 - 153 141.00 -5.90
3 
miRNA  3' guaGUC-UUUCGCAAAUGUCa 5'
             ||| ||:|: |||::|| 
Target 5' ttcCAGCAAGGTTTTTGTAGc 3'
 1828 - 1848 129.00 -9.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30498245 6 COSMIC
COSN31610314 15 COSMIC
COSN30468800 36 COSMIC
COSN8862521 43 COSMIC
COSN20066626 48 COSMIC
COSN31506012 54 COSMIC
COSN20058841 86 COSMIC
COSN28835177 86 COSMIC
COSN14437608 87 COSMIC
COSN18769636 87 COSMIC
COSN30497922 87 COSMIC
COSN26481451 218 COSMIC
COSN23692868 299 COSMIC
COSN31588278 403 COSMIC
COSN8638880 433 COSMIC
COSN20095031 480 COSMIC
COSN31960272 787 COSMIC
COSN31549236 1461 COSMIC
COSN31528054 1506 COSMIC
COSN27595092 1632 COSMIC
COSN31588782 1647 COSMIC
COSN28999569 1735 COSMIC
COSN24773447 1790 COSMIC
COSN8521521 2323 COSMIC
COSN17076301 2579 COSMIC
COSN26325664 2690 COSMIC
COSN31960271 2743 COSMIC
COSN10056285 2885 COSMIC
COSN30335474 3257 COSMIC
COSN28201976 3438 COSMIC
COSN8521520 3536 COSMIC
COSN6403938 4148 COSMIC
COSN8521519 4174 COSMIC
COSN31582684 4465 COSMIC
COSN28095147 4737 COSMIC
rs41286801 3749 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1188277074 2 dbSNP
rs199710333 5 dbSNP
rs1486240018 6 dbSNP
rs1237614475 7 dbSNP
rs1318130739 13 dbSNP
rs762236862 15 dbSNP
rs779396631 16 dbSNP
rs201613930 21 dbSNP
rs754423730 22 dbSNP
rs1314379988 23 dbSNP
rs1415153063 24 dbSNP
rs1359734058 27 dbSNP
rs1184639013 34 dbSNP
rs1387609108 35 dbSNP
rs755154811 37 dbSNP
rs1015071729 39 dbSNP
rs1005560980 43 dbSNP
rs764357585 43 dbSNP
rs754133267 46 dbSNP
rs1455292511 47 dbSNP
rs934205548 47 dbSNP
rs1345196733 50 dbSNP
rs200737372 50 dbSNP
rs890702816 52 dbSNP
rs1156579322 55 dbSNP
rs1300696459 57 dbSNP
rs1029310021 58 dbSNP
rs1401136067 59 dbSNP
rs1418460400 73 dbSNP
rs1425718650 77 dbSNP
rs1191857355 81 dbSNP
rs1489465303 86 dbSNP
rs1396358613 87 dbSNP
rs6689737 88 dbSNP
rs1374429503 89 dbSNP
rs6603978 89 dbSNP
rs1266861629 90 dbSNP
rs1309906744 90 dbSNP
rs1317583103 93 dbSNP
rs200428687 93 dbSNP
rs1222107129 94 dbSNP
rs1488729441 95 dbSNP
rs918765130 95 dbSNP
rs201951736 96 dbSNP
rs1288654499 101 dbSNP
rs1237286185 103 dbSNP
rs1316867963 105 dbSNP
rs1302517484 107 dbSNP
rs201275224 108 dbSNP
rs1364946937 109 dbSNP
rs200425212 110 dbSNP
rs1420344080 111 dbSNP
rs202223184 111 dbSNP
rs201205364 112 dbSNP
rs1173388768 113 dbSNP
rs199848107 113 dbSNP
rs201771520 114 dbSNP
rs1400267943 115 dbSNP
rs200908663 116 dbSNP
rs1296132373 117 dbSNP
rs12728513 118 dbSNP
rs1359673632 119 dbSNP
rs201599890 120 dbSNP
rs1037180349 121 dbSNP
rs11274071 121 dbSNP
rs146230362 121 dbSNP
rs200752743 122 dbSNP
rs1427353145 123 dbSNP
rs1265247000 124 dbSNP
rs199978047 124 dbSNP
rs1198483117 125 dbSNP
rs1316432783 125 dbSNP
rs1233930606 126 dbSNP
rs941118619 127 dbSNP
rs1190002090 129 dbSNP
rs560241192 129 dbSNP
rs1478289992 131 dbSNP
rs1480487448 132 dbSNP
rs1265548480 137 dbSNP
rs1203771649 139 dbSNP
rs548715553 142 dbSNP
rs1256940368 143 dbSNP
rs201987036 144 dbSNP
rs1321996180 145 dbSNP
rs1163973271 146 dbSNP
rs1170947094 146 dbSNP
rs1186775976 146 dbSNP
rs1201006960 146 dbSNP
rs1218382924 146 dbSNP
rs1227027379 146 dbSNP
rs1260562126 146 dbSNP
rs1265432861 146 dbSNP
rs1274090264 146 dbSNP
rs1285422465 146 dbSNP
rs1292871106 146 dbSNP
rs1338761638 146 dbSNP
rs1344898327 146 dbSNP
rs1356085781 146 dbSNP
rs1358722808 146 dbSNP
rs1366188537 146 dbSNP
rs1405685986 146 dbSNP
rs1421299506 146 dbSNP
rs1421846606 146 dbSNP
rs1456294698 146 dbSNP
rs1477264147 146 dbSNP
rs1490370455 146 dbSNP
rs200063630 146 dbSNP
rs200819104 146 dbSNP
rs1271007231 147 dbSNP
rs1430224740 147 dbSNP
rs1282124649 148 dbSNP
rs1218656435 149 dbSNP
rs1227033995 149 dbSNP
rs1342000441 150 dbSNP
rs199534223 151 dbSNP
rs1360853879 152 dbSNP
rs1381295769 153 dbSNP
rs201701035 157 dbSNP
rs200617170 158 dbSNP
rs199755894 160 dbSNP
rs1243546627 162 dbSNP
rs1471685210 163 dbSNP
rs893647331 167 dbSNP
rs185844334 169 dbSNP
rs1156805819 171 dbSNP
rs1378496106 173 dbSNP
rs201603173 182 dbSNP
rs1400257062 191 dbSNP
rs1052244440 202 dbSNP
rs1347220679 206 dbSNP
rs200244179 219 dbSNP
rs1175826370 221 dbSNP
rs199580999 230 dbSNP
rs1384036147 232 dbSNP
rs927912621 236 dbSNP
rs982448877 244 dbSNP
rs1349311300 247 dbSNP
rs1223916400 250 dbSNP
rs1191371654 275 dbSNP
rs369772292 275 dbSNP
rs201628226 279 dbSNP
rs927884446 288 dbSNP
rs1021208575 290 dbSNP
rs200520234 292 dbSNP
rs1046471899 295 dbSNP
rs201903905 301 dbSNP
rs1237565459 303 dbSNP
rs948026529 304 dbSNP
rs1469664054 305 dbSNP
rs1159270848 308 dbSNP
rs200771519 309 dbSNP
rs200280874 312 dbSNP
rs916546278 313 dbSNP
rs957476281 317 dbSNP
rs201848066 332 dbSNP
rs1033092025 333 dbSNP
rs201199002 345 dbSNP
rs376734978 346 dbSNP
rs1006919971 349 dbSNP
rs1335724088 353 dbSNP
rs199841448 363 dbSNP
rs889779426 364 dbSNP
rs1280738287 367 dbSNP
rs963466366 369 dbSNP
rs1051077632 372 dbSNP
rs1263439737 374 dbSNP
rs1460386499 376 dbSNP
rs182152873 381 dbSNP
rs1249705389 383 dbSNP
rs897367471 384 dbSNP
rs1037615986 386 dbSNP
rs1262997841 389 dbSNP
rs941526693 393 dbSNP
rs555223169 397 dbSNP
rs1198948644 399 dbSNP
rs1430323228 400 dbSNP
rs201684151 401 dbSNP
rs983622300 407 dbSNP
rs1396257048 412 dbSNP
rs201236445 416 dbSNP
rs200059053 417 dbSNP
rs1030533765 424 dbSNP
rs1226304627 435 dbSNP
rs1403873992 445 dbSNP
rs201935222 453 dbSNP
rs200554570 455 dbSNP
rs996351644 456 dbSNP
rs1347061069 460 dbSNP
rs1216436746 462 dbSNP
rs76158040 479 dbSNP
rs199608537 480 dbSNP
rs78900584 489 dbSNP
rs201983981 490 dbSNP
rs11296452 491 dbSNP
rs1221890885 491 dbSNP
rs1287715887 491 dbSNP
rs200861770 491 dbSNP
rs397783686 491 dbSNP
rs398074155 491 dbSNP
rs77745286 491 dbSNP
rs1481511124 492 dbSNP
rs1017870526 493 dbSNP
rs1191343197 495 dbSNP
rs77266924 497 dbSNP
rs1450126909 498 dbSNP
rs201350409 500 dbSNP
rs1389256460 502 dbSNP
rs1331878273 507 dbSNP
rs1303179521 509 dbSNP
rs200273094 509 dbSNP
rs913810804 509 dbSNP
rs1442670927 510 dbSNP
rs199785513 522 dbSNP
rs1402608577 528 dbSNP
rs201287649 529 dbSNP
rs558233352 536 dbSNP
rs1052721585 547 dbSNP
rs999363643 549 dbSNP
rs1166197934 552 dbSNP
rs1282323007 556 dbSNP
rs906482279 565 dbSNP
rs957839992 572 dbSNP
rs200188615 574 dbSNP
rs201720194 576 dbSNP
rs111331978 577 dbSNP
rs1490862000 593 dbSNP
rs200513770 599 dbSNP
rs985556963 606 dbSNP
rs1447911749 611 dbSNP
rs202240090 615 dbSNP
rs189935849 616 dbSNP
rs1444521984 619 dbSNP
rs201005240 621 dbSNP
rs1386502245 622 dbSNP
rs1451074202 623 dbSNP
rs916598495 630 dbSNP
rs1385270048 631 dbSNP
rs1383680583 633 dbSNP
rs763749661 637 dbSNP
rs199951086 638 dbSNP
rs1317093233 639 dbSNP
rs1361663549 641 dbSNP
rs372521616 647 dbSNP
rs201772060 648 dbSNP
rs1351613523 653 dbSNP
rs1207151489 654 dbSNP
rs1241616650 656 dbSNP
rs1461160240 664 dbSNP
rs954088882 683 dbSNP
rs1356641741 684 dbSNP
rs1245589299 688 dbSNP
rs201143003 692 dbSNP
rs984061496 693 dbSNP
rs1358550474 694 dbSNP
rs140950699 700 dbSNP
rs1448958354 701 dbSNP
rs1173818846 706 dbSNP
rs923403172 707 dbSNP
rs1015826058 710 dbSNP
rs1338617906 711 dbSNP
rs1390831538 712 dbSNP
rs974982804 716 dbSNP
rs1295574535 720 dbSNP
rs1241385460 723 dbSNP
rs888625844 731 dbSNP
rs1323271251 733 dbSNP
rs902749281 735 dbSNP
rs1422958025 738 dbSNP
rs547310971 739 dbSNP
rs1159600368 741 dbSNP
rs1017922831 742 dbSNP
rs201679316 743 dbSNP
rs200819887 757 dbSNP
rs1250528606 758 dbSNP
rs1055195899 770 dbSNP
rs1196820346 780 dbSNP
rs1428245698 783 dbSNP
rs1362520088 785 dbSNP
rs958065566 787 dbSNP
rs200063759 790 dbSNP
rs202086474 795 dbSNP
rs113365527 799 dbSNP
rs1219873064 803 dbSNP
rs200504922 804 dbSNP
rs1286511846 810 dbSNP
rs1281582538 812 dbSNP
rs201856476 815 dbSNP
rs1224376080 817 dbSNP
rs201154004 822 dbSNP
rs1306127499 827 dbSNP
rs1204368277 828 dbSNP
rs146693100 828 dbSNP
rs200680879 828 dbSNP
rs945059077 829 dbSNP
rs913831684 830 dbSNP
rs989383787 830 dbSNP
rs1417056962 839 dbSNP
rs1427767275 845 dbSNP
rs1171059861 846 dbSNP
rs1356252865 855 dbSNP
rs199514677 857 dbSNP
rs910406658 867 dbSNP
rs1365068297 868 dbSNP
rs1278811807 877 dbSNP
rs1038148520 887 dbSNP
rs774638579 893 dbSNP
rs985923738 897 dbSNP
rs886407205 914 dbSNP
rs201342407 919 dbSNP
rs1296879636 923 dbSNP
rs1309833668 927 dbSNP
rs1233870705 940 dbSNP
rs1047812026 943 dbSNP
rs1290315740 945 dbSNP
rs954280053 949 dbSNP
rs1029731947 952 dbSNP
rs961396252 952 dbSNP
rs964446432 952 dbSNP
rs545102909 957 dbSNP
rs1186942730 959 dbSNP
rs933381575 973 dbSNP
rs200409995 976 dbSNP
rs1285244803 979 dbSNP
rs1384619105 990 dbSNP
rs202103974 991 dbSNP
rs1403382509 993 dbSNP
rs1325768155 998 dbSNP
rs1365150329 1001 dbSNP
rs552802932 1010 dbSNP
rs1402744926 1012 dbSNP
rs41286807 1013 dbSNP
rs1367801958 1014 dbSNP
rs1451022935 1026 dbSNP
rs1315038235 1027 dbSNP
rs1158566735 1030 dbSNP
rs200153848 1038 dbSNP
rs1281672290 1040 dbSNP
rs202040137 1045 dbSNP
rs201093885 1047 dbSNP
rs989585628 1056 dbSNP
rs957734828 1062 dbSNP
rs888676498 1063 dbSNP
rs1479918346 1064 dbSNP
rs1445281153 1065 dbSNP
rs1031044087 1075 dbSNP
rs1405912763 1076 dbSNP
rs1002315213 1078 dbSNP
rs906298703 1081 dbSNP
rs1391274591 1088 dbSNP
rs777879752 1095 dbSNP
rs1468633786 1100 dbSNP
rs1445131271 1102 dbSNP
rs970453246 1103 dbSNP
rs1336615286 1109 dbSNP
rs1024838291 1118 dbSNP
rs1009680535 1123 dbSNP
rs1201012747 1129 dbSNP
rs533123342 1135 dbSNP
rs200065343 1137 dbSNP
rs186292415 1153 dbSNP
rs1269690442 1159 dbSNP
rs1221715572 1168 dbSNP
rs143205036 1173 dbSNP
rs1279001375 1174 dbSNP
rs936589892 1177 dbSNP
rs201003378 1189 dbSNP
rs200031724 1190 dbSNP
rs201757317 1191 dbSNP
rs200673227 1194 dbSNP
rs199913232 1206 dbSNP
rs748500172 1211 dbSNP
rs201436940 1214 dbSNP
rs1048162266 1215 dbSNP
rs181952896 1224 dbSNP
rs1176107238 1227 dbSNP
rs199674260 1232 dbSNP
rs201772795 1233 dbSNP
rs755498103 1236 dbSNP
rs1407342020 1238 dbSNP
rs200612637 1241 dbSNP
rs901915341 1246 dbSNP
rs1327447459 1254 dbSNP
rs976873561 1255 dbSNP
rs1442384812 1261 dbSNP
rs1039214941 1262 dbSNP
rs1343305406 1269 dbSNP
rs908569492 1270 dbSNP
rs1195503295 1291 dbSNP
rs1283639046 1292 dbSNP
rs199580510 1294 dbSNP
rs914691193 1301 dbSNP
rs990417816 1305 dbSNP
rs201426539 1310 dbSNP
rs200425409 1312 dbSNP
rs1272288441 1315 dbSNP
rs952995679 1319 dbSNP
rs202171882 1320 dbSNP
rs1474207648 1323 dbSNP
rs1002824711 1325 dbSNP
rs201270386 1326 dbSNP
rs142123299 1333 dbSNP
rs1025529560 1335 dbSNP
rs557641585 1336 dbSNP
rs147618096 1337 dbSNP
rs1009320514 1347 dbSNP
rs970504002 1349 dbSNP
rs1410017362 1353 dbSNP
rs202102555 1358 dbSNP
rs1024724305 1359 dbSNP
rs1201862576 1361 dbSNP
rs532949771 1362 dbSNP
rs1053461575 1364 dbSNP
rs201324791 1365 dbSNP
rs1258781888 1366 dbSNP
rs1303441721 1372 dbSNP
rs1000519076 1375 dbSNP
rs990536477 1377 dbSNP
rs1337648108 1384 dbSNP
rs1269502409 1387 dbSNP
rs1246402489 1389 dbSNP
rs569411062 1389 dbSNP
rs199803143 1392 dbSNP
rs190803024 1395 dbSNP
rs933202225 1396 dbSNP
rs1006149448 1423 dbSNP
rs1222002154 1443 dbSNP
rs568419280 1448 dbSNP
rs200904356 1458 dbSNP
rs200062191 1460 dbSNP
rs1452526971 1479 dbSNP
rs201598625 1480 dbSNP
rs1039101934 1487 dbSNP
rs200793094 1489 dbSNP
rs1423526387 1502 dbSNP
rs1171861776 1503 dbSNP
rs116564084 1524 dbSNP
rs186738483 1525 dbSNP
rs1380193556 1540 dbSNP
rs1317327285 1553 dbSNP
rs1326812734 1563 dbSNP
rs201750366 1564 dbSNP
rs200964280 1567 dbSNP
rs561323098 1569 dbSNP
rs199522412 1571 dbSNP
rs201655216 1572 dbSNP
rs1245384867 1576 dbSNP
rs531117579 1580 dbSNP
rs1340589923 1581 dbSNP
rs200615615 1588 dbSNP
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Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 7813.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine "PAR-CLIP data was present in GSM1065669. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000370331.1 | 3UTR | UAUAUAUAUAUAUAUAUAUAUAUAUAUAUUUUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1065669
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_8
Location of target site ENST00000370331.1 | 3UTR | UAUAUAUAUAUAUAUAUAUAUAUAUAUUUUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
BRCA -0.257 0.01 -0.244 0.01 84 Click to see details
KIRP -0.385 0.01 -0.299 0.05 32 Click to see details
PRAD -0.264 0.03 -0.229 0.05 50 Click to see details
LUSC 0.296 0.04 0.272 0.05 38 Click to see details
LUAD -0.528 0.04 -0.462 0.07 12 Click to see details
LIHC -0.245 0.04 -0.104 0.24 49 Click to see details
KIRC -0.188 0.06 -0.212 0.04 68 Click to see details
ESCA -0.449 0.08 -0.664 0.01 11 Click to see details
CHOL 0.387 0.15 0.200 0.3 9 Click to see details
HNSC -0.129 0.21 -0.071 0.33 41 Click to see details
KICH 0.16 0.22 0.062 0.38 25 Click to see details
PAAD 0.543 0.23 0.400 0.3 4 Click to see details
BLCA 0.188 0.23 0.096 0.36 17 Click to see details
UCEC -0.176 0.24 -0.286 0.12 19 Click to see details
STAD -0.062 0.37 -0.066 0.36 30 Click to see details
THCA -0.004 0.49 -0.075 0.29 59 Click to see details
PCPG -0.003 0.5 0.500 0.33 3 Click to see details
CESC -1 0.5 -1.000 0.5 3 Click to see details
CESC -1 0.5 -1.000 0.5 3 Click to see details
93 hsa-miR-3607-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057680 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT058092 EIF4G2 eukaryotic translation initiation factor 4 gamma 2 2 4
MIRT063624 FBXO28 F-box protein 28 2 2
MIRT071884 BTF3L4 basic transcription factor 3 like 4 2 2
MIRT079440 FOXK2 forkhead box K2 2 4
MIRT080491 BCL10 B-cell CLL/lymphoma 10 2 2
MIRT081214 MIDN midnolin 2 10
MIRT082786 ZNF264 zinc finger protein 264 2 2
MIRT082862 ZNF543 zinc finger protein 543 2 4
MIRT099112 FOXC1 forkhead box C1 2 4
MIRT099343 QKI QKI, KH domain containing RNA binding 2 2
MIRT100913 CD2AP CD2 associated protein 2 2
MIRT104030 USP42 ubiquitin specific peptidase 42 2 6
MIRT130023 QSER1 glutamine and serine rich 1 2 2
MIRT142614 IL21R interleukin 21 receptor 2 2
MIRT143477 CHD9 chromodomain helicase DNA binding protein 9 2 2
MIRT187759 ESYT1 extended synaptotagmin 1 2 2
MIRT200250 EVI5 ecotropic viral integration site 5 2 2
MIRT212867 N4BP2 NEDD4 binding protein 2 2 2
MIRT219622 GIGYF1 GRB10 interacting GYF protein 1 2 8
MIRT220244 FAM3C family with sequence similarity 3 member C 2 6
MIRT222069 PURB purine rich element binding protein B 2 2
MIRT243478 TRIM71 tripartite motif containing 71 2 2
MIRT261690 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT320184 ITGB8 integrin subunit beta 8 2 2
MIRT441644 CCNB1IP1 cyclin B1 interacting protein 1 2 6
MIRT441965 BACE2 beta-site APP-cleaving enzyme 2 2 2
MIRT442175 TRIM59 tripartite motif containing 59 2 4
MIRT442716 TNKS tankyrase 2 2
MIRT443932 ZNF418 zinc finger protein 418 2 2
MIRT445790 ALG13 ALG13, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT448148 P2RY10 purinergic receptor P2Y10 2 2
MIRT463393 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT463761 YPEL2 yippee like 2 2 2
MIRT477233 ETF1 eukaryotic translation termination factor 1 2 2
MIRT483464 DR1 down-regulator of transcription 1 2 6
MIRT484110 ABCD2 ATP binding cassette subfamily D member 2 2 4
MIRT487297 SLC38A9 solute carrier family 38 member 9 2 2
MIRT501292 RRN3 RRN3 homolog, RNA polymerase I transcription factor 2 4
MIRT501343 RNF44 ring finger protein 44 2 4
MIRT502696 CSNK1G1 casein kinase 1 gamma 1 2 4
MIRT511075 NIPA1 non imprinted in Prader-Willi/Angelman syndrome 1 2 4
MIRT511243 KLHL36 kelch like family member 36 2 6
MIRT531418 PLBD2 phospholipase B domain containing 2 2 2
MIRT536603 IRF2 interferon regulatory factor 2 2 2
MIRT537727 ELAVL2 ELAV like RNA binding protein 2 2 2
MIRT537985 DPP8 dipeptidyl peptidase 8 2 2
MIRT539083 ARNTL aryl hydrocarbon receptor nuclear translocator like 2 4
MIRT547185 PBRM1 polybromo 1 2 2
MIRT547596 LIN28B lin-28 homolog B 2 2
MIRT548188 FOXA1 forkhead box A1 2 2
MIRT555055 PYURF PIGY upstream reading frame 2 2
MIRT557321 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT557979 FAM217B family with sequence similarity 217 member B 2 4
MIRT558439 DDIT4 DNA damage inducible transcript 4 2 3
MIRT558560 CRLF3 cytokine receptor like factor 3 2 4
MIRT562332 FGF2 fibroblast growth factor 2 2 2
MIRT565836 SCML2 Scm polycomb group protein like 2 2 2
MIRT566796 MIER3 MIER family member 3 2 2
MIRT568565 AK4 adenylate kinase 4 2 2
MIRT572483 PRR14L proline rich 14 like 2 2
MIRT572586 HGFAC HGF activator 2 2
MIRT572876 OPHN1 oligophrenin 1 2 2
MIRT573136 ABT1 activator of basal transcription 1 2 2
MIRT573244 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT573388 GGA2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 2 2
MIRT574588 N4BP1 NEDD4 binding protein 1 2 2
MIRT575081 Ddit4 DNA-damage-inducible transcript 4 2 3
MIRT609077 SMIM15 small integral membrane protein 15 2 8
MIRT619337 RNF2 ring finger protein 2 2 2
MIRT623058 NRXN1 neurexin 1 2 2
MIRT623307 MARCH4 membrane associated ring-CH-type finger 4 2 2
MIRT623899 FOXN3 forkhead box N3 2 2
MIRT625177 GRIK4 glutamate ionotropic receptor kainate type subunit 4 2 2
MIRT630448 GTPBP8 GTP binding protein 8 (putative) 2 2
MIRT630587 SLC9A8 solute carrier family 9 member A8 2 2
MIRT634451 PAK6 p21 (RAC1) activated kinase 6 2 2
MIRT634727 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT635769 PDCL3 phosducin like 3 2 2
MIRT650924 ST6GALNAC1 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 2 2
MIRT668975 CLSTN2 calsyntenin 2 2 2
MIRT669612 AEBP2 AE binding protein 2 2 2
MIRT686746 STX16 syntaxin 16 2 2
MIRT687932 HMGN1 high mobility group nucleosome binding domain 1 2 2
MIRT691875 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT698432 TM4SF1 transmembrane 4 L six family member 1 2 2
MIRT698572 TFDP2 transcription factor Dp-2 2 2
MIRT704500 CPEB4 cytoplasmic polyadenylation element binding protein 4 2 2
MIRT704907 CCDC71L coiled-coil domain containing 71 like 2 2
MIRT713810 XRCC2 X-ray repair cross complementing 2 2 2
MIRT718300 MOGAT1 monoacylglycerol O-acyltransferase 1 2 2
MIRT719022 SHROOM3 shroom family member 3 2 2
MIRT723766 MPLKIP M-phase specific PLK1 interacting protein 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3607 Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia tissue
hsa-miR-3607 Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (SKOV3)
hsa-miR-3607 Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-3607 Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-3607 Plx-4720 24180719 NSC757438 resistant High Thyroid Cancer cell line (8505c, BCPAP)
hsa-mir-3607 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-3607 Cisplatin 5460033 NSC119875 approved sensitive cell line (CP20)
hsa-mir-3607 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-3607-3p Paclitaxel 36314 NSC125973 approved resistant High Prostate Cancer cell line (DU-145, PC-3)
hsa-miR-3607-3p Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia tissue
hsa-miR-3607-3p Anthracycline 30323 NSC82151 approved resistant High Breast Cancer tissue
hsa-miR-3607-3p Cyclophosphamide 2907 NSC26271 approved resistant High Breast Cancer tissue
hsa-miR-3607-3p Fluorouracil 3385 NSC19893 approved resistant High Breast Cancer tissue
hsa-miR-3607-3p Taxol 36314 NSC125973 approved resistant High Breast Cancer tissue
hsa-miR-3607-3p Methotrexate 126941 NSC740 approved resistant High Breast Cancer tissue
hsa-miR-3607-3p Temozolomide 5394 NSC362856 approved resistant cell line (U251)
hsa-miR-3607-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-3607-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-3607-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-3607-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-3607-3p Platinum 23939 resistant tissue
hsa-miR-3607-3p Platinum 23939 resistant tissue (non-small cell lung cancer)
hsa-miR-3607-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3607-3p Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM16)
hsa-miR-3607-3p Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-3607-3p Bortezomib 387447 NSC681239 approved sensitive tissue (multiple myeloma)
hsa-miR-3607-3p Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-3607-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (Panc1-GR1)
hsa-miR-3607-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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