miRTarBase - #MIRT202397


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pre-miRNA Information
pre-miRNA hsa-mir-552   
Genomic Coordinates chr1: 34669599 - 34669694
Synonyms MIRN552, hsa-mir-552, MIR552
Description Homo sapiens miR-552 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-552-5p
Sequence 25| GUUUAACCUUUUGCCUGUUGG |45
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs76067517 2 dbSNP
rs1395509888 7 dbSNP
rs766113217 8 dbSNP
rs1390014269 9 dbSNP
rs763407724 13 dbSNP
rs921530704 15 dbSNP
rs1191461120 18 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol GPCPD1   
Synonyms EDI3, GDE5, GDPD6, PREI4
Description glycerophosphocholine phosphodiesterase 1
Transcript NM_019593   
Expression
Putative miRNA Targets on GPCPD1
3'UTR of GPCPD1
(miRNA target sites are highlighted)		 
>GPCPD1|NM_019593|3'UTR
   1 TTTTTATTGCACAGAGGTCATTTTGGGGGCGTGCACCGCTGTTCTGGGTATTCATTTTTCATCACTGAGCATTGTTGATC
  81 TATGCCTTTTGGGCTTCTCAGTTCAATGAAGCAATAATGAAGTATTTAACTCTTTCACTACAGTTCTTGCAAGTATGCTA
 161 TTTAAATTACTTGGCCAGGTATAATTGCCAGTCAGTCTCTTTATAGTGAGAAAATTTATTGGTTAGTAATATAAATATTT
 241 TAAACTAAATATATAAATCTATAATGTTAAACATATGTTCATTAAAAGCATAGCACTTTGAAATTAACTATATAAATAGC
 321 TCATATTTACACTTACAGCTTTTCATTTGATCAGGTCTGAAATCTTTAGCACTTAAGGAAAATGACTATGCATAATTATA
 401 CCTGACCATGAAAAAAATAAGTACCTCAAATGCATGCATTTGCACTGGTGATTCCAACTGCACAAATCTTTGTGCCATCT
 481 TGTATATAGGTATTTTTTACATGGGTTGACATGCACACAACACCATTTTCATTCAGTATGAACCTTGAGGCTGCTGCCAT
 561 TTTTCCACTTAACCAAACCAGCCTGAAGGTGAACCTCGAAACTTGTTTCATAAATCTTTCAAAAGTTGTTTTACATCAAT
 641 GTTAAAATTTCAAAATGCTGCAGGGTAATTTAATGTATAAAATATTAGTAAGAAAAAGTATGTATTGCATACTTAGTAGA
 721 ATAGATCACAACATACAAATTCAATTCAGTGCATGCTTTAGGTGTTAAGCATGAGATTGTACATGTTTACTGTTAGGTCC
 801 TTGCATCTGTGGTGCTAGGTGAGTATGAGAAGATGTCAAGGACTGGACGTATTTTGTTGCCTAAAAAAAAAAGGCTGTTT
 881 GTAGGCGTTTTAAATATGCTTATTTTGTGTGTCTCTCACTACCTATTACACACTGTTGCTTTGTGGGTTTGTTTTGTATG
 961 TGCGTGTGTTATACAGTAGTTAAATTTCCATGCAGAAAAATAAATGTCCTGAATTTTCATATTAGTATTCTTTATTGTAT
1041 ATCATGCATGTAATTTATTTAGAAATGTAGGTCTTACTAAATGTATATGCATGTATTTCAGATTATACTAGGATTTCTTG
1121 GATTAGAAGCAGATTGTGTTAACTGTAACTTAAAGAATGAATGTTAAATAAAATGATACAGATTTATTTTCTTCATTACA
1201 AAATGAAATTTCAAGAAGGTGTTACTTTTGTAGAATGGTTTTATAATATGACAAGAAATTTTAATATAGTGTCTACCCTA
1281 AAGGGATGGCTTATTTGCATCTACCTTTTACTGCATGTTTTTCACAAGGCAGTTTATTCATATATTGACATATTTTGGTA
1361 GTAGCTGAGAACCTAAGACTTGAAATTATACATTGTGTAGTATTTTTTAAGCTAAGCAATGCAATTTTGGTCAGATCTTA
1441 TTTGTGTGAAGATAGGCTCTGAAATCCTATGGTATTGCGTTTGTAACGTTGATATTAATGCAAAATAGTTTAGGAAATGG
1521 AGTCTTCTGCAAGGGTTCTGTATACTTTTCCCACATTGTATGAGATTTTCCAAAATTTTGGTGTGAATTGGGCACTTTTG
1601 GAAAACTCCTGAAAAAGAATTAGTTTCCTTCATCTGCAGACCTTTGTCCAATACGGTTACCATTTCTTTATAGTAACTCG
1681 ATTAGCCATATATGTTTGTTTCTAGTCCTGCTCCTTTGCTCCTCTCCTATGCCTTCCCAGTGCTGGCTCCATTTTGAAGA
1761 CTCAAGGACAGAGGGGAAGCAGATCATAAAGAGAAAAAGGAGACAGAAGAAAGGATGAAGGAAGGAGGTCATGGGGAGTG
1841 TGGCTTCTGAGCAGTTTAGTTGCTGGGGAGAGCAGACAGTCACTGCCTACAATACAGACAGAACCTTCCTGCTCACTTTC
1921 TGTCCTATCTCTTCCTGACCTTATGAACCAGTGTTAGTAGATGATTAAAACATGACAAGCAATGGCTCCTTATTTTCACA
2001 GGACTAAGTCCGGGCCTTCGTATCACTAGCTGTTGCCTTTTACACCCTGCTTCAGCCACCCTGTCCCTGTCATTGGCCCT
2081 GGACTTCCTCTCTGTGCCCGTGTGTCCTCTGCCTGGGAGCCCTCTCCTCCCATAGTCACTTTCTCTCTGCCAAACTCATT
2161 TCTTCTTGTGCCCAAGACCTCTCTCCTGAGCCCTTGTGGAAACTTCAGGAAGGATGAATCCGTCTTTGTGCTCCACGGCT
2241 CGTACCTTGATCAGGCTGTGCATCACAGTAATTCTGTTCTAGGTAGGCAGAGTTGATCTTTGTCTCATCTGCCAGGCTGC
2321 AGGCTCTTCAAGGGCAGGGACCTTGTCATAGTCATTTTTATTTTCACAGTGCTTGGAACATGGTGGAAAATGAATGTTGG
2401 AATTATTGGAGTAATATAATTTGTATCAAATGTCCTTTTGAATTAAGAGATTTAGTTATGTTTACTAAGAATGTAAACTT
2481 TGAATTGGTTTGCATTTTAACAATTAGGATGGTTTATTGATGTGAATTTTGAAATGTAGAGGTATAATGTTAAATTATTT
2561 TATACTTTATGGAAATCAAGTGAAATGTTTGAAAAAATGCCGCCATTATCCTCTGGTATTTTCTACTCTCTGGAATTATG
2641 TGCTGTAAATGATCGGCTGTAAATGTGAGGCACACCACCCACCCCTGTGTGGAAAGTGTTGTGGCGCTTCCTGCCACCCA
2721 CCCACCTCTCTGCCGTTGCTCCTTGTGACACTTGTCTGTCGTCTCCCATCCAAACTCCAAGCTTACAGCTACCTCAGTAC
2801 TGCTTTGCTTGTCTGAAACACCTCCTTTGCCTTCCTTCAGTGTCCCGCTCAGGTGCAGCCTCCTCCCTAAAGCTCATCTC
2881 AGCTTTTGATCTGAATGATGATGGAAACATGCAGACAGCCTCTCAGTCTTACTATTTAATGTTGTAGCTGGGAAAAAACC
2961 CAGAGAGGTTAACTGATATACTGGGTTGGGACTAGGATGTGGGTTTTGTGACTCTGAATCCCATGTTCTCAAACTACGCT
3041 GCCTTCCGAAGTCTGGCATTTGTTAGCTCATGCTTCCTTGTAGTCCAGCTTCTTATGTGCCTGTTATATTCTCCAGTAAG
3121 ATTGTAAGCCCCTTAAGGGCAGGGACGTCTTTGCATCTCTAGCACTGCTATAGTGTTCTATCCTTAGTTATGAACTAGAT
3201 AAATAAATGGTGGTGGCAACAATCCTAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ggUUGUCCGU-UUUCCAAUUug 5'
            || |  || |:|||||||  
Target 5' aaAAAACCCAGAGAGGTTAAct 3'
 2953 - 2974 139.00 -9.60
2 
miRNA  3' gguUGUCCGUUUUCCAAUUUg 5'
             | |||:| || |||||| 
Target 5' tgtAGAGGTATAATGTTAAAt 3'
 2535 - 2555 138.00 -8.80
3 
miRNA  3' ggUUGUCCGUUUUCCAAUUUg 5'
            :||||  :||||| |:|| 
Target 5' gaGACAGAAGAAAGGATGAAg 3'
 1800 - 1820 123.00 -11.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30494287 18 COSMIC
COSN30166245 32 COSMIC
COSN31535383 33 COSMIC
COSN26977782 38 COSMIC
COSN30138353 49 COSMIC
COSN30485728 60 COSMIC
COSN30484563 63 COSMIC
COSN26603948 80 COSMIC
COSN2528752 83 COSMIC
COSN7098644 85 COSMIC
COSN31525358 122 COSMIC
COSN10018605 123 COSMIC
COSN30153121 132 COSMIC
COSN30530048 201 COSMIC
COSN5975050 257 COSMIC
COSN16333492 415 COSMIC
COSN22489276 698 COSMIC
COSN29832901 723 COSMIC
COSN8001447 776 COSMIC
COSN30158092 821 COSMIC
COSN31579215 895 COSMIC
COSN14860517 1446 COSMIC
COSN1877281 1618 COSMIC
COSN25327309 2262 COSMIC
COSN20116246 2592 COSMIC
COSN19682849 2751 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs755534832 7 dbSNP
rs1367739641 11 dbSNP
rs754394434 12 dbSNP
rs1191403160 16 dbSNP
rs1449252423 19 dbSNP
rs1262896458 20 dbSNP
rs1425790272 23 dbSNP
rs370762705 25 dbSNP
rs182378290 30 dbSNP
rs374518148 31 dbSNP
rs1482136007 34 dbSNP
rs767793810 37 dbSNP
rs371155477 38 dbSNP
rs1348007460 41 dbSNP
rs1455302013 44 dbSNP
rs1443862709 60 dbSNP
rs1289170602 69 dbSNP
rs1256679871 75 dbSNP
rs1017898029 77 dbSNP
rs1397981232 81 dbSNP
rs1276524294 82 dbSNP
rs1357658262 83 dbSNP
rs1228934621 86 dbSNP
rs570168844 92 dbSNP
rs1008569177 99 dbSNP
rs1276726758 106 dbSNP
rs1320396761 106 dbSNP
rs1261613702 108 dbSNP
rs1488166111 111 dbSNP
rs1214969889 112 dbSNP
rs890087626 117 dbSNP
rs1485811518 126 dbSNP
rs1180722336 128 dbSNP
rs1411007883 130 dbSNP
rs531306295 137 dbSNP
rs1159735237 143 dbSNP
rs1379675088 147 dbSNP
rs747103730 149 dbSNP
rs554783376 158 dbSNP
rs536712673 170 dbSNP
rs1314540930 177 dbSNP
rs1377466726 186 dbSNP
rs1281995924 197 dbSNP
rs1302281474 198 dbSNP
rs777912664 199 dbSNP
rs1225605054 203 dbSNP
rs934392844 207 dbSNP
rs1341430583 210 dbSNP
rs1238379297 214 dbSNP
rs1282937267 215 dbSNP
rs1348081599 216 dbSNP
rs1208989727 217 dbSNP
rs79882310 242 dbSNP
rs879495241 249 dbSNP
rs1408509175 250 dbSNP
rs1372908660 252 dbSNP
rs546774639 253 dbSNP
rs1437787899 256 dbSNP
rs949027578 256 dbSNP
rs1395475682 257 dbSNP
rs916168253 261 dbSNP
rs1415190500 262 dbSNP
rs1357701702 273 dbSNP
rs143241062 273 dbSNP
rs1491469250 276 dbSNP
rs1376747004 277 dbSNP
rs1491144862 277 dbSNP
rs374017119 278 dbSNP
rs748819569 281 dbSNP
rs993456348 284 dbSNP
rs938711068 287 dbSNP
rs570650705 288 dbSNP
rs1346142874 289 dbSNP
rs1219064432 290 dbSNP
rs1473277001 295 dbSNP
rs147240435 299 dbSNP
rs1308937539 307 dbSNP
rs1181138543 310 dbSNP
rs762401207 321 dbSNP
rs1198685556 322 dbSNP
rs1256897378 323 dbSNP
rs1456343335 324 dbSNP
rs1471499742 325 dbSNP
rs1398122313 329 dbSNP
rs1195430607 333 dbSNP
rs1253622074 336 dbSNP
rs908522708 336 dbSNP
rs1253810392 342 dbSNP
rs1411888315 344 dbSNP
rs1423277626 344 dbSNP
rs1171399795 352 dbSNP
rs1399646970 353 dbSNP
rs1464193740 369 dbSNP
rs1182814256 370 dbSNP
rs777518735 371 dbSNP
rs1490041474 375 dbSNP
rs1287196502 396 dbSNP
rs1211246740 398 dbSNP
rs1436164282 405 dbSNP
rs982890449 411 dbSNP
rs952762936 418 dbSNP
rs1218879993 421 dbSNP
rs1259820719 429 dbSNP
rs1315529941 431 dbSNP
rs1226894171 442 dbSNP
rs530409336 449 dbSNP
rs1450995474 456 dbSNP
rs1219048899 459 dbSNP
rs190120110 462 dbSNP
rs1476475303 463 dbSNP
rs973233651 465 dbSNP
rs1423249085 472 dbSNP
rs964866119 476 dbSNP
rs1325656609 482 dbSNP
rs1167237148 484 dbSNP
rs1017532877 485 dbSNP
rs1406057334 487 dbSNP
rs1321929197 499 dbSNP
rs1347325592 508 dbSNP
rs1401063984 512 dbSNP
rs1277165946 517 dbSNP
rs1384465068 523 dbSNP
rs1157233503 532 dbSNP
rs1234560336 536 dbSNP
rs1455382594 538 dbSNP
rs1355481369 543 dbSNP
rs6053479 544 dbSNP
rs1473241964 572 dbSNP
rs1226541242 577 dbSNP
rs1286339147 580 dbSNP
rs1009204884 581 dbSNP
rs6053478 583 dbSNP
rs1262703338 588 dbSNP
rs954425487 593 dbSNP
rs1031284201 594 dbSNP
rs998596292 597 dbSNP
rs1472720890 598 dbSNP
rs904279249 608 dbSNP
rs1410878209 614 dbSNP
rs376579847 632 dbSNP
rs1298017628 635 dbSNP
rs1358192575 636 dbSNP
rs1042748875 638 dbSNP
rs1477682799 639 dbSNP
rs547885300 653 dbSNP
rs1339360055 660 dbSNP
rs1244447357 675 dbSNP
rs1281185942 677 dbSNP
rs1354371347 690 dbSNP
rs1239106485 693 dbSNP
rs1283654038 699 dbSNP
rs1351712239 700 dbSNP
rs1202405579 721 dbSNP
rs1013094153 722 dbSNP
rs1200327772 737 dbSNP
rs529701811 738 dbSNP
rs1240540201 741 dbSNP
rs1440883443 747 dbSNP
rs551621500 762 dbSNP
rs1378855993 769 dbSNP
rs938915915 777 dbSNP
rs1206445978 778 dbSNP
rs908575143 780 dbSNP
rs755563043 782 dbSNP
rs1401110501 784 dbSNP
rs1393754681 785 dbSNP
rs754338527 791 dbSNP
rs1377484701 792 dbSNP
rs1445975600 796 dbSNP
rs541223787 798 dbSNP
rs531687225 800 dbSNP
rs1372908261 803 dbSNP
rs1233783472 819 dbSNP
rs565426358 825 dbSNP
rs1277141079 826 dbSNP
rs1198764280 839 dbSNP
rs1437208404 841 dbSNP
rs765920423 848 dbSNP
rs544062197 849 dbSNP
rs1325933529 860 dbSNP
rs1318776578 861 dbSNP
rs562753338 867 dbSNP
rs1390532255 871 dbSNP
rs1200067022 873 dbSNP
rs61493788 873 dbSNP
rs796959759 873 dbSNP
rs755649342 877 dbSNP
rs1413734576 883 dbSNP
rs998480343 883 dbSNP
rs185745625 885 dbSNP
rs749936109 886 dbSNP
rs200052280 887 dbSNP
rs1329213827 892 dbSNP
rs1174262978 894 dbSNP
rs1013060139 899 dbSNP
rs1387105682 900 dbSNP
rs894669050 907 dbSNP
rs532670748 913 dbSNP
rs1231341101 915 dbSNP
rs1003163400 921 dbSNP
rs1318681693 922 dbSNP
rs767125894 925 dbSNP
rs554898092 926 dbSNP
rs1198143398 927 dbSNP
rs1466013300 943 dbSNP
rs1248293203 946 dbSNP
rs747917554 956 dbSNP
rs887357431 959 dbSNP
rs1047308070 963 dbSNP
rs1210757738 964 dbSNP
rs1209795104 975 dbSNP
rs931313469 983 dbSNP
rs1195395521 996 dbSNP
rs1441060433 997 dbSNP
rs761427832 1006 dbSNP
rs536751170 1010 dbSNP
rs1058433 1016 dbSNP
rs116483835 1017 dbSNP
rs1167969259 1020 dbSNP
rs1370078419 1024 dbSNP
rs942765056 1025 dbSNP
rs910419460 1030 dbSNP
rs1292674391 1039 dbSNP
rs1388302486 1045 dbSNP
rs1401674425 1046 dbSNP
rs1180512462 1052 dbSNP
rs181452357 1069 dbSNP
rs1341402012 1076 dbSNP
rs15291 1077 dbSNP
rs1295555954 1081 dbSNP
rs1276406701 1084 dbSNP
rs1323966691 1089 dbSNP
rs754855502 1100 dbSNP
rs987708048 1101 dbSNP
rs1219317733 1102 dbSNP
rs1263417973 1105 dbSNP
rs1336351388 1107 dbSNP
rs1446946884 1115 dbSNP
rs8657 1131 dbSNP
rs924539006 1133 dbSNP
rs369900501 1143 dbSNP
rs1163971947 1146 dbSNP
rs1366696780 1147 dbSNP
rs1421255414 1149 dbSNP
rs574713286 1149 dbSNP
rs189978464 1150 dbSNP
rs1166128082 1155 dbSNP
rs991285133 1155 dbSNP
rs958693767 1157 dbSNP
rs1390340567 1162 dbSNP
rs775354066 1167 dbSNP
rs1180928862 1171 dbSNP
rs1396738852 1173 dbSNP
rs769755511 1175 dbSNP
rs1003458282 1191 dbSNP
rs1239637174 1208 dbSNP
rs1211408495 1219 dbSNP
rs1287218335 1220 dbSNP
rs1483036447 1226 dbSNP
rs930075376 1230 dbSNP
rs1207327268 1249 dbSNP
rs1342982992 1258 dbSNP
rs1312200347 1265 dbSNP
rs547774668 1266 dbSNP
rs1253942433 1282 dbSNP
rs747103906 1285 dbSNP
rs1178954705 1298 dbSNP
rs976559026 1301 dbSNP
rs963952127 1310 dbSNP
rs1417706308 1315 dbSNP
rs1157182017 1323 dbSNP
rs1018602315 1327 dbSNP
rs529787784 1329 dbSNP
rs968774116 1330 dbSNP
rs1369819853 1335 dbSNP
rs1381163190 1336 dbSNP
rs560621106 1348 dbSNP
rs1306120670 1350 dbSNP
rs1310365638 1358 dbSNP
rs773307643 1363 dbSNP
rs115086150 1366 dbSNP
rs6053477 1373 dbSNP
rs547620468 1376 dbSNP
rs532615194 1378 dbSNP
rs1163614200 1385 dbSNP
rs1312441397 1394 dbSNP
rs1208753568 1395 dbSNP
rs1035477074 1398 dbSNP
rs1003704174 1405 dbSNP
rs1458983106 1415 dbSNP
rs1416364821 1418 dbSNP
rs905388827 1424 dbSNP
rs1045705155 1427 dbSNP
rs12480450 1437 dbSNP
rs888416429 1442 dbSNP
rs1184979443 1446 dbSNP
rs1483422367 1451 dbSNP
rs1264999536 1454 dbSNP
rs779431823 1469 dbSNP
rs1051154829 1478 dbSNP
rs930024626 1479 dbSNP
rs922688386 1487 dbSNP
rs1400263954 1488 dbSNP
rs1440418270 1489 dbSNP
rs1276996086 1490 dbSNP
rs1367793233 1497 dbSNP
rs924424487 1500 dbSNP
rs1041146956 1503 dbSNP
rs1233613175 1509 dbSNP
rs1349654822 1511 dbSNP
rs187134371 1512 dbSNP
rs1257315712 1515 dbSNP
rs576632878 1519 dbSNP
rs1223434325 1528 dbSNP
rs1247082203 1531 dbSNP
rs561305191 1534 dbSNP
rs2273370 1540 dbSNP
rs914279191 1548 dbSNP
rs572599061 1550 dbSNP
rs554291434 1555 dbSNP
rs968670028 1556 dbSNP
rs1351214116 1558 dbSNP
rs1423474755 1559 dbSNP
rs912860437 1564 dbSNP
rs1325860629 1570 dbSNP
rs1165063593 1573 dbSNP
rs1436277121 1575 dbSNP
rs1194779168 1576 dbSNP
rs1300882197 1581 dbSNP
rs958362311 1582 dbSNP
rs1218671951 1590 dbSNP
rs1277049443 1593 dbSNP
rs41282124 1600 dbSNP
rs1035859076 1602 dbSNP
rs1290591069 1614 dbSNP
rs1450809443 1615 dbSNP
rs182039962 1618 dbSNP
rs539087734 1629 dbSNP
rs1035424909 1631 dbSNP
rs1194398664 1650 dbSNP
rs1262573693 1651 dbSNP
rs1474505396 1652 dbSNP
rs1001314771 1654 dbSNP
rs969937090 1655 dbSNP
rs190751541 1656 dbSNP
rs1006184133 1660 dbSNP
rs1161986523 1661 dbSNP
rs898740246 1666 dbSNP
rs1018488269 1679 dbSNP
rs558678349 1680 dbSNP
rs888708090 1685 dbSNP
rs1449662535 1691 dbSNP
rs1051634940 1693 dbSNP
rs1355591736 1697 dbSNP
rs935400787 1698 dbSNP
rs1247441237 1702 dbSNP
rs1287906250 1702 dbSNP
rs536987742 1711 dbSNP
rs1217617706 1714 dbSNP
rs1041526254 1718 dbSNP
rs1328209004 1720 dbSNP
rs994123046 1721 dbSNP
rs947347596 1723 dbSNP
rs901212081 1729 dbSNP
rs1238519238 1731 dbSNP
rs1266063950 1734 dbSNP
rs1230116658 1736 dbSNP
rs914479156 1739 dbSNP
rs1041092003 1740 dbSNP
rs942819896 1741 dbSNP
rs1317399217 1746 dbSNP
rs937020126 1750 dbSNP
rs928300895 1761 dbSNP
rs1157665048 1763 dbSNP
rs1384512110 1770 dbSNP
rs1369112419 1771 dbSNP
rs981215359 1776 dbSNP
rs951102512 1783 dbSNP
rs918796661 1792 dbSNP
rs1450356554 1793 dbSNP
rs1311457173 1794 dbSNP
rs1377344284 1799 dbSNP
rs1433985600 1801 dbSNP
rs974319818 1806 dbSNP
rs911010177 1813 dbSNP
rs963026938 1814 dbSNP
rs1042897088 1819 dbSNP
rs947245419 1821 dbSNP
rs913143915 1825 dbSNP
rs988754448 1831 dbSNP
rs959675811 1832 dbSNP
rs1458125379 1836 dbSNP
rs1018844940 1838 dbSNP
rs1007082627 1839 dbSNP
rs148688473 1851 dbSNP
rs1174581914 1854 dbSNP
rs980230955 1857 dbSNP
rs1434974275 1866 dbSNP
rs969841355 1868 dbSNP
rs1361653510 1869 dbSNP
rs547810603 1870 dbSNP
rs1478811686 1872 dbSNP
rs1172579718 1880 dbSNP
rs1400866942 1881 dbSNP
rs369731914 1886 dbSNP
rs1005717476 1889 dbSNP
rs183522435 1894 dbSNP
rs1463742494 1910 dbSNP
rs1250164691 1915 dbSNP
rs1334147344 1927 dbSNP
rs1210305254 1935 dbSNP
rs1235703741 1936 dbSNP
rs1275738759 1943 dbSNP
rs1043743912 1946 dbSNP
rs1486081965 1948 dbSNP
rs1221819374 1959 dbSNP
rs1255274616 1960 dbSNP
rs1025840835 1965 dbSNP
rs1011437797 1973 dbSNP
rs1458622414 1979 dbSNP
rs994404333 1980 dbSNP
rs1231067444 1984 dbSNP
rs1248861880 2003 dbSNP
rs893078880 2005 dbSNP
rs901161085 2007 dbSNP
rs543289151 2009 dbSNP
rs115424798 2011 dbSNP
rs1007344951 2012 dbSNP
rs369105457 2019 dbSNP
rs144195496 2020 dbSNP
rs929751190 2025 dbSNP
rs571754724 2029 dbSNP
rs543980500 2031 dbSNP
rs1301591530 2036 dbSNP
rs1468072844 2043 dbSNP
rs540476862 2047 dbSNP
rs1356568785 2049 dbSNP
rs1403126744 2053 dbSNP
rs1280183990 2061 dbSNP
rs115150317 2062 dbSNP
rs1053001456 2065 dbSNP
rs191336893 2071 dbSNP
rs1250184273 2077 dbSNP
rs1358881530 2081 dbSNP
rs911496086 2083 dbSNP
rs986002511 2084 dbSNP
rs188387214 2087 dbSNP
rs1489734106 2092 dbSNP
rs1195142310 2093 dbSNP
rs979796164 2097 dbSNP
rs948430513 2099 dbSNP
rs575337488 2100 dbSNP
rs984978019 2103 dbSNP
rs999560804 2106 dbSNP
rs1458194673 2126 dbSNP
rs116790932 2133 dbSNP
rs183994276 2153 dbSNP
rs972933332 2156 dbSNP
rs1010927176 2165 dbSNP
rs756622757 2167 dbSNP
rs1294021321 2168 dbSNP
rs893016031 2168 dbSNP
rs1342812874 2173 dbSNP
rs1245921555 2180 dbSNP
rs1203754575 2181 dbSNP
rs1356741533 2182 dbSNP
rs1218336522 2183 dbSNP
rs1055725081 2187 dbSNP
rs1001736517 2191 dbSNP
rs1184302278 2193 dbSNP
rs6107650 2194 dbSNP
rs1299354519 2196 dbSNP
rs1424340583 2205 dbSNP
rs1227780600 2207 dbSNP
rs1045626292 2213 dbSNP
rs1340225605 2218 dbSNP
rs578042758 2221 dbSNP
rs1020323353 2222 dbSNP
rs1346053632 2224 dbSNP
rs929698650 2228 dbSNP
rs1287212963 2231 dbSNP
rs1006883133 2234 dbSNP
rs1356605734 2236 dbSNP
rs889812488 2237 dbSNP
rs1315048003 2239 dbSNP
rs138033782 2241 dbSNP
rs1372563423 2242 dbSNP
rs1011686041 2248 dbSNP
rs1168704512 2267 dbSNP
rs1257245527 2268 dbSNP
rs1483328149 2269 dbSNP
rs6085202 2275 dbSNP
rs1052948388 2276 dbSNP
rs941048934 2277 dbSNP
rs938540483 2283 dbSNP
rs879415576 2285 dbSNP
rs1179058012 2301 dbSNP
rs751156944 2304 dbSNP
rs575967859 2307 dbSNP
rs1156931082 2308 dbSNP
rs1360962510 2310 dbSNP
rs1044741211 2320 dbSNP
rs1053399 2321 dbSNP
rs1449414059 2326 dbSNP
rs1181449249 2336 dbSNP
rs1372071133 2348 dbSNP
rs1481777821 2360 dbSNP
rs934273562 2362 dbSNP
rs759822730 2364 dbSNP
rs978256441 2368 dbSNP
rs774860427 2376 dbSNP
rs984535142 2380 dbSNP
rs1198976582 2384 dbSNP
rs146202378 2395 dbSNP
rs1175689064 2400 dbSNP
rs989854879 2406 dbSNP
rs959404489 2417 dbSNP
rs1034137220 2432 dbSNP
rs1247364659 2439 dbSNP
rs1427759598 2440 dbSNP
rs766813361 2446 dbSNP
rs1001452078 2454 dbSNP
rs1354297673 2455 dbSNP
rs1440520914 2473 dbSNP
rs1294887360 2478 dbSNP
rs577924440 2481 dbSNP
rs1288268083 2488 dbSNP
rs762791273 2495 dbSNP
rs1024125966 2501 dbSNP
rs1215086362 2502 dbSNP
rs965550783 2503 dbSNP
rs36115146 2507 dbSNP
rs1305529527 2509 dbSNP
rs78131102 2516 dbSNP
rs1271273851 2540 dbSNP
rs538392740 2546 dbSNP
rs954047619 2549 dbSNP
rs1266854680 2550 dbSNP
rs765123709 2554 dbSNP
rs1388784754 2561 dbSNP
rs1165237604 2563 dbSNP
rs1011633747 2566 dbSNP
rs759477273 2568 dbSNP
rs1419470697 2570 dbSNP
rs191860369 2572 dbSNP
rs1167378998 2573 dbSNP
rs11365607 2598 dbSNP
rs398088236 2598 dbSNP
rs1418378131 2600 dbSNP
rs1031793848 2601 dbSNP
rs1471592187 2611 dbSNP
rs1002703753 2612 dbSNP
rs1181835774 2618 dbSNP
rs1229772806 2622 dbSNP
rs112527631 2625 dbSNP
rs1264742295 2626 dbSNP
rs1222002242 2627 dbSNP
rs772219233 2629 dbSNP
rs945557881 2639 dbSNP
rs1194026441 2641 dbSNP
rs1241994064 2642 dbSNP
rs915288782 2650 dbSNP
rs1474719698 2654 dbSNP
rs1183894977 2655 dbSNP
rs4815837 2659 dbSNP
rs556145125 2660 dbSNP
rs1161258935 2666 dbSNP
rs1362111448 2669 dbSNP
rs1033672430 2670 dbSNP
rs11571 2672 dbSNP
rs531706030 2674 dbSNP
rs1331788386 2675 dbSNP
rs1343308421 2684 dbSNP
rs1450137672 2686 dbSNP
rs1315711921 2691 dbSNP
rs1381736169 2696 dbSNP
rs6107649 2700 dbSNP
rs1232551235 2705 dbSNP
rs780435676 2706 dbSNP
rs1353135966 2712 dbSNP
rs1205729111 2722 dbSNP
rs1283656594 2723 dbSNP
rs1445418044 2725 dbSNP
rs1206110134 2726 dbSNP
rs919006681 2734 dbSNP
rs961200768 2735 dbSNP
rs527942190 2736 dbSNP
rs1017217373 2739 dbSNP
rs1470317549 2742 dbSNP
rs1005291818 2745 dbSNP
rs73076084 2761 dbSNP
rs1319597919 2762 dbSNP
rs1415727930 2765 dbSNP
rs944198899 2766 dbSNP
rs1405299594 2773 dbSNP
rs1450121707 2780 dbSNP
rs1049384061 2781 dbSNP
rs1337687220 2786 dbSNP
rs1409994564 2791 dbSNP
rs1348602895 2795 dbSNP
rs1159077212 2808 dbSNP
rs1477404575 2820 dbSNP
rs997821896 2821 dbSNP
rs141661519 2824 dbSNP
rs1202106824 2829 dbSNP
rs1042622839 2833 dbSNP
rs945672242 2842 dbSNP
rs1180614995 2844 dbSNP
rs915405773 2845 dbSNP
rs114607046 2846 dbSNP
rs938091700 2847 dbSNP
rs1207161932 2848 dbSNP
rs1428438662 2851 dbSNP
rs12480127 2852 dbSNP
rs954444934 2853 dbSNP
rs926718719 2859 dbSNP
rs1449111064 2860 dbSNP
rs982106261 2865 dbSNP
rs1200455154 2876 dbSNP
rs970724778 2890 dbSNP
rs746340719 2895 dbSNP
rs1328398849 2901 dbSNP
rs1342929684 2908 dbSNP
rs35957265 2915 dbSNP
rs562985618 2919 dbSNP
rs1284019388 2920 dbSNP
rs544346820 2927 dbSNP
rs1222222257 2934 dbSNP
rs1323371387 2934 dbSNP
rs1253660637 2939 dbSNP
rs972641931 2944 dbSNP
rs914545273 2949 dbSNP
rs1235156884 2957 dbSNP
rs1195615163 2961 dbSNP
rs1247918063 2962 dbSNP
rs961316954 2966 dbSNP
rs1199423118 2967 dbSNP
rs1364661620 2976 dbSNP
rs990142249 2979 dbSNP
rs575856100 2984 dbSNP
rs1195210987 2991 dbSNP
rs1373614051 3006 dbSNP
rs554298768 3007 dbSNP
rs542524805 3008 dbSNP
rs1461260359 3009 dbSNP
rs1165964852 3011 dbSNP
rs1432544267 3012 dbSNP
rs1368887541 3013 dbSNP
rs1346814268 3030 dbSNP
rs1304056559 3032 dbSNP
rs1344954917 3035 dbSNP
rs1403220328 3036 dbSNP
rs571996575 3037 dbSNP
rs956064385 3038 dbSNP
rs1031741480 3039 dbSNP
rs116698582 3041 dbSNP
rs971225200 3047 dbSNP
rs117773209 3048 dbSNP
rs1489621093 3050 dbSNP
rs1206409349 3058 dbSNP
rs1042072029 3062 dbSNP
rs1427864752 3063 dbSNP
rs1190678033 3065 dbSNP
rs1012794483 3078 dbSNP
rs1386859259 3080 dbSNP
rs756693266 3083 dbSNP
rs887686217 3085 dbSNP
rs1445080799 3092 dbSNP
rs1164432368 3094 dbSNP
rs1049009026 3096 dbSNP
rs993107970 3097 dbSNP
rs897526273 3099 dbSNP
rs1009761824 3104 dbSNP
rs1290721968 3107 dbSNP
rs1476592280 3109 dbSNP
rs751052581 3116 dbSNP
rs1382150501 3117 dbSNP
rs1296118485 3127 dbSNP
rs532551570 3130 dbSNP
rs1243103125 3133 dbSNP
rs777447918 3146 dbSNP
rs944473717 3147 dbSNP
rs1240492550 3159 dbSNP
rs1260808847 3164 dbSNP
rs1485299090 3172 dbSNP
rs1187418855 3174 dbSNP
rs938191574 3175 dbSNP
rs1182775156 3180 dbSNP
rs1422286439 3187 dbSNP
rs1161638216 3191 dbSNP
rs1364441935 3192 dbSNP
rs1453207100 3204 dbSNP
rs1319093844 3210 dbSNP
rs912691870 3214 dbSNP
rs1441149207 3215 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 56261.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065670. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM1065670
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / 4-thiouridine, 3_ML_LG
Location of target site ENST00000379019.4 | 3UTR | UUAAAAUUUCAAAAUGCUGCAGGGUAAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
118 hsa-miR-552-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT060509 PPP6R3 protein phosphatase 6 regulatory subunit 3 2 2
MIRT061011 C1ORF21 chromosome 1 open reading frame 21 2 6
MIRT090823 MBNL1 muscleblind like splicing regulator 1 2 4
MIRT126569 MASTL microtubule associated serine/threonine kinase like 2 2
MIRT147688 CBX4 chromobox 4 2 4
MIRT191746 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT202397 GPCPD1 glycerophosphocholine phosphodiesterase 1 2 2
MIRT231334 XRRA1 X-ray radiation resistance associated 1 2 8
MIRT241355 SLC16A1 solute carrier family 16 member 1 2 2
MIRT280627 BCL11B B-cell CLL/lymphoma 11B 2 2
MIRT287408 GPATCH8 G-patch domain containing 8 2 2
MIRT314310 FCHO2 FCH domain only 2 2 2
MIRT321751 ANKRD46 ankyrin repeat domain 46 2 2
MIRT329335 ETF1 eukaryotic translation termination factor 1 2 2
MIRT346611 PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 2 6
MIRT349189 ZNF557 zinc finger protein 557 2 2
MIRT357416 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT359670 NUS1 NUS1 dehydrodolichyl diphosphate synthase subunit 2 2
MIRT442751 PLAG1 PLAG1 zinc finger 2 6
MIRT446639 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT450820 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT452304 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 2
MIRT468814 RSRC2 arginine and serine rich coiled-coil 2 2 6
MIRT471878 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 6
MIRT472681 MYCBP MYC binding protein 2 4
MIRT473123 MLLT10 MLLT10, histone lysine methyltransferase DOT1L cofactor 2 2
MIRT477434 EML4 echinoderm microtubule associated protein like 4 2 4
MIRT501254 SECISBP2L SECIS binding protein 2 like 2 2
MIRT501586 PLCG1 phospholipase C gamma 1 2 2
MIRT503371 SCAMP1 secretory carrier membrane protein 1 2 2
MIRT504358 ARID1B AT-rich interaction domain 1B 2 6
MIRT504421 SHC4 SHC adaptor protein 4 2 6
MIRT505497 SRSF1 serine and arginine rich splicing factor 1 2 4
MIRT505792 RSBN1 round spermatid basic protein 1 2 8
MIRT506471 NAA25 N(alpha)-acetyltransferase 25, NatB auxiliary subunit 2 4
MIRT507372 EPS8 epidermal growth factor receptor pathway substrate 8 2 2
MIRT510850 RAN RAN, member RAS oncogene family 2 8
MIRT510986 PER1 period circadian clock 1 2 4
MIRT512987 SEZ6L seizure related 6 homolog like 2 4
MIRT514937 GPR141 G protein-coupled receptor 141 2 2
MIRT522131 NRBF2 nuclear receptor binding factor 2 2 6
MIRT524300 CTC1 CST telomere replication complex component 1 2 8
MIRT526363 LSAMP limbic system-associated membrane protein 2 2
MIRT526441 RBM48 RNA binding motif protein 48 2 2
MIRT526534 MDM2 MDM2 proto-oncogene 2 4
MIRT528065 HES2 hes family bHLH transcription factor 2 2 2
MIRT531043 TIPARP TCDD inducible poly(ADP-ribose) polymerase 2 2
MIRT532313 FKBP9 FK506 binding protein 9 2 4
MIRT533196 WASF3 WAS protein family member 3 2 4
MIRT535701 NAV1 neuron navigator 1 2 5
MIRT536791 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT537228 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT538247 CUX2 cut like homeobox 2 2 2
MIRT538476 CLOCK clock circadian regulator 2 2
MIRT538798 C2CD5 C2 calcium dependent domain containing 5 2 2
MIRT539031 ATXN7L1 ataxin 7 like 1 2 2
MIRT542043 SLC25A46 solute carrier family 25 member 46 2 2
MIRT543093 TNFRSF11A TNF receptor superfamily member 11a 2 2
MIRT543545 INTS2 integrator complex subunit 2 2 2
MIRT554332 SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 2 4
MIRT556070 MRFAP1 Morf4 family associated protein 1 2 2
MIRT558125 ENPP4 ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative) 2 2
MIRT559132 BTG3 BTG anti-proliferation factor 3 2 4
MIRT559423 ASF1A anti-silencing function 1A histone chaperone 2 2
MIRT560026 ZNF780A zinc finger protein 780A 2 2
MIRT566128 RACGAP1 Rac GTPase activating protein 1 2 2
MIRT566441 PHF13 PHD finger protein 13 2 2
MIRT568541 AKT3 AKT serine/threonine kinase 3 2 2
MIRT568626 ACVR2A activin A receptor type 2A 2 2
MIRT576599 Nav1 neuron navigator 1 2 4
MIRT609438 USP27X ubiquitin specific peptidase 27, X-linked 2 2
MIRT611441 NRIP3 nuclear receptor interacting protein 3 2 2
MIRT613007 GABRB1 gamma-aminobutyric acid type A receptor beta1 subunit 2 2
MIRT614149 CEP97 centrosomal protein 97 2 2
MIRT614580 LHX1 LIM homeobox 1 2 2
MIRT615631 ATF6 activating transcription factor 6 2 4
MIRT616115 NDUFS1 NADH:ubiquinone oxidoreductase core subunit S1 2 2
MIRT620351 WDR75 WD repeat domain 75 2 2
MIRT621733 TNPO2 transportin 2 2 2
MIRT623718 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT626107 MYLIP myosin regulatory light chain interacting protein 2 2
MIRT630779 CRLS1 cardiolipin synthase 1 2 2
MIRT632585 PLCL1 phospholipase C like 1 (inactive) 2 2
MIRT635161 HOXD12 homeobox D12 2 2
MIRT635878 SIX3 SIX homeobox 3 2 2
MIRT636941 LIMS3 LIM zinc finger domain containing 3 2 2
MIRT637007 LIMS3L LIM zinc finger domain containing 4 2 2
MIRT639202 LRRC9 leucine rich repeat containing 9 2 4
MIRT639388 PKHD1 PKHD1, fibrocystin/polyductin 2 2
MIRT639543 SMCR7L mitochondrial elongation factor 1 1 1
MIRT642071 FUT11 fucosyltransferase 11 2 2
MIRT642567 GDPGP1 GDP-D-glucose phosphorylase 1 2 2
MIRT643035 SNX24 sorting nexin 24 2 2
MIRT648372 SMPD1 sphingomyelin phosphodiesterase 1 2 2
MIRT648529 KIAA1143 KIAA1143 2 2
MIRT652184 TRIM44 tripartite motif containing 44 2 2
MIRT652945 SYNC syncoilin, intermediate filament protein 2 2
MIRT657012 KCNK5 potassium two pore domain channel subfamily K member 5 2 2
MIRT658993 DIP2C disco interacting protein 2 homolog C 2 2
MIRT659629 CDKN2AIP CDKN2A interacting protein 2 2
MIRT659769 CCBE1 collagen and calcium binding EGF domains 1 2 2
MIRT660527 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 2
MIRT668526 ERP44 endoplasmic reticulum protein 44 2 2
MIRT687184 PRKAR1A protein kinase cAMP-dependent type I regulatory subunit alpha 2 2
MIRT696280 IER3IP1 immediate early response 3 interacting protein 1 2 2
MIRT697673 WASL Wiskott-Aldrich syndrome like 2 2
MIRT697716 VKORC1L1 vitamin K epoxide reductase complex subunit 1 like 1 2 2
MIRT699719 SESTD1 SEC14 and spectrin domain containing 1 2 2
MIRT701220 OGDH oxoglutarate dehydrogenase 2 2
MIRT701436 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT701554 NANOS1 nanos C2HC-type zinc finger 1 2 2
MIRT707559 CLVS2 clavesin 2 2 2
MIRT707925 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT711148 NAA15 N(alpha)-acetyltransferase 15, NatA auxiliary subunit 2 2
MIRT719256 CD44 CD44 molecule (Indian blood group) 2 2
MIRT719810 TXNDC17 thioredoxin domain containing 17 2 2
MIRT722650 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT723901 PEX11A peroxisomal biogenesis factor 11 alpha 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-552 Ursodeoxycholic acid (UDCA) approved 31401 Microarray rat Liver 20689055 2010 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-552 Fluorouracil 3385 NSC19893 approved resistant cell line (KYSE)

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