miRTarBase - #MIRT204532


—
pre-miRNA Information
pre-miRNA hsa-mir-3128   
Genomic Coordinates chr2: 177255945 - 177256010
Description Homo sapiens miR-3128 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3128
Sequence 5| UCUGGCAAGUAAAAAACUCUCAU |27
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN31530001 21 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1235581387 2 dbSNP
rs1336086844 4 dbSNP
rs1049299498 14 dbSNP
rs1442692120 17 dbSNP
rs574224659 17 dbSNP
rs911997793 17 dbSNP
rs1235274433 19 dbSNP
rs868602383 21 dbSNP
Putative Targets

Gene Information
Gene Symbol SLC39A10   
Synonyms LZT-Hs2
Description solute carrier family 39 member 10
Transcript NM_001127257   
Other Transcripts NM_020342   
Expression
Putative miRNA Targets on SLC39A10
3'UTR of SLC39A10
(miRNA target sites are highlighted)		 
>SLC39A10|NM_001127257|3'UTR
   1 CCTTTCCCAGTAATCACTGTTGATTACGAGAATGTTACCATGCAGCTTTGCATCTGTTCCTTGTACTGTATGCACATTGC
  81 TCAAAGGAAAGTCAGTGGCTTGCACTACTTACAAGTTTCATAGATTTGAGCCTAACCACAAGAGGCTGGTGCTTAGTACT
 161 GTTTTCCCTGCACGTAGGGGTCTTTTAAAAATATAAAGCTTGTGATAAAGAGAGGAGAATATGGGACTCCATGAACCAGT
 241 GTTGATATGTTTGATTAAGACTTTTCACAAAATAATCATATAAAACACTAGTCTCTTTATTAGTAGAAACTTCTGTGGCT
 321 ATGCAGAAATAGAGATCGAACCAAAAAAAATCATTTAAACTTTAAAAATATTTTAAATGGACTTTGGGGAGACATTTTTT
 401 GTGTGTTTTAAGAATGAATTGTAGTGCTCTTTAATTCAGCTACATATATTCATGTGGTGATAGGGATCAACTTGACACAA
 481 CTTTGAAACTGCATAAAGTAGACATAGGAACTAGAGGAAAGCTCAGGCTGCATTAGAGTATGAATTTAGCATTGGGAAAA
 561 GCCCTTATTCTTGAATCTAGAGTTACTATTTTTGTATATATTTGCATAGTGTTTAAACCTGCAGCCTAAACTACTGAAAT
 641 TTGTGATTGTATGTTTGTGTGAGCTTCAGTTTAATGAAAGATTCATAATGGTTCTTTGTATTATTATAATACTTGGTGTT
 721 GGGGTGTTCTTTCTGTTTTGTTTTTTACTTTAATTTTGTTTTGATTTTTTTTTTTTTTTTTTGGCGGGGGTAGGTGAGGG
 801 TTTGGAGCATGTGGTCTTTTTAAAAAATTGTAACCCTCTAGAAAATATCAAAGAAATGAACCAGACGTGGTTTAAATAGT
 881 TGATTTTCCTATTTTAACAGTACCAACTAGTTAATTGGGAAATGTAAGTTCTGAATGTTCACATTGCTTTACCAGTTTGG
 961 CACTGGAACCAAGAGCACATGTCGTGGCTGGCTACAAGGTTGTAAAGCAGAAAATCGAAGTTTACCATGTCTGTAATGTG
1041 TACATGAAGTGTCAATTTAGAACAGTTACTAGGATAAACTCCATTATTGCCATGGCTGTCATGGTACCCAAGTGACTTGG
1121 AAGATGCATTTAAATTACTCAGCTGAAATCACTTGATCATCTTGTGCCAAGATATGCTGTTGGTGCCTGATAGGGATTAG
1201 TCTTTTAGGTGCCCTGTTCTCCTACCATAATTGTGAATGATTTGTGAGAAGTGCAAGCCATGTTTATCCTGAATTTTTAC
1281 TTAATAATTTGTATTACTAGTCATATGCATGTAGCTTTCTGTTTACATCCTATGCCACATGGTCTTCATTTATGCCAGGT
1361 AAACTGTATTTGAACTATGTGCAGCTAGCTTTGTTTTAATCTGCTTGGCAACCAGTGTAGCTGCTGTAACAATCTATCTT
1441 ATTGTTCAAATATATAAGAGCCAAACTCTTTTCCATTCCATCTAAAATGTTTTCATTTAGTACTCTTCTTTCCTCCTACT
1521 CTATGAACTTCAAAACAAAAACAAAACTTTGAGAGCAGCACATGCATCCAGGTATTTATAGATTATTGCCAGTGTCTTTT
1601 CTGTATGCTATAAGCAAGGGAGCTTAGGTGTTATTTCTTTAATTTATGCTTGAATCTGAAAAATTATTTCTGACTTACTC
1681 CATGGCCTCCTTATAATAAGTAGAAGTTTTATATATAATTAATTTTCAGCATTGGGCACTGAATTAGGACAGTCCTCATC
1761 TCATTGCTTGGCCCTTCAAGCAACCTAGCTAAAAGGTGCTGATATTTTATTTAGTACTGCCAACTTCAAGTGATTTAGAT
1841 ATCTATCTATCTAGATTTCTGAACCAAGATATATTTATAGTTCACTTTTGGGTTTTTATACCCACGGTAGGATTCTGCAT
1921 TCCAGCATTAAATCTGCTTCATTTTAGAACCTTTATAAAAGCAATAGCTGGAATATACTCCCAGTTTTAAAATAAATGCC
2001 TGATTGATTTAAAGCAAGTAGGTTATGCTGAAGTATATAAAGAAGTTTTATATTCTCTCAAAAATGGTATTATCTTTCTT
2081 TATTTGCTAGATTCTTACAAATCTTTTAAGAGGGCTGTAACAGTTGCTGCTAGTATTAGGGTTCCACATCATTCTAATGT
2161 ATAGTTTCAAGTCTTAATAGACAATCTGAATTCCACTACATTTCTTTTGGCTCCAACATTCCTTTTAGCTTGACCAGTCT
2241 AATTTAAAATGTGTTTGTTGGAGGTCATTAACGTTACTTGTACAATGCTGTCACTGTGTGACATCCATATGAATTTTGGT
2321 ATATATCAATCAATCAATCAATCACATTGCATTCAATCAATCAGCTGTGATTGATTGATTATGCTTAGAAATACTATAGT
2401 AACTAGATGCAGTGTGAATTTTTTCCATTAACAAACAAACAAGTCAGTGGCTTAAATGTGATTATGGTCCTGCAAGGTGA
2481 TTCTTGCTAAAATATCTAAACTTTTGTTTTGTTTTAACTGAATCATTTTTTAACTTAAAAAGCTGGAAAATATCAAATGC
2561 TGTTTTTTTTTTTTCATTGTCAACAGTGGTGTGTCATTTTATGTATGTTCCTAATGCTTATGGAACTCCTCCAAAATAAA
2641 GTTACTCAAAGAGAGCAAATAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uacucUCAAAAAAUG------AACGGUCu 5'
               || | ||||:      ||||||| 
Target 5' catccAGGTATTTATAGATTATTGCCAGt 3'
 1565 - 1593 152.00 -9.60
2 
miRNA  3' uacucucAAAAAAUGAACGGUCu 5'
                 || ||||:||||:|| 
Target 5' attatctTTCTTTATTTGCTAGa 3'
 2069 - 2091 152.00 -12.80
3 
miRNA  3' uacucucaAAAAAUGAAC-GGUCu 5'
                  |||| :|||| |||| 
Target 5' aacattccTTTTAGCTTGACCAGt 3'
 2215 - 2238 131.00 -9.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26995306 13 COSMIC
COSN31503343 28 COSMIC
COSN26465502 29 COSMIC
COSN30522385 50 COSMIC
COSN31492370 54 COSMIC
COSN22591394 55 COSMIC
COSN1231135 67 COSMIC
COSN26995303 90 COSMIC
COSN30193913 99 COSMIC
COSN31492806 117 COSMIC
COSN30460271 120 COSMIC
COSN30168587 124 COSMIC
COSN18727371 148 COSMIC
COSN30129817 187 COSMIC
COSN31563765 322 COSMIC
COSN31480505 351 COSMIC
COSN31482804 438 COSMIC
COSN1231137 447 COSMIC
COSN26643362 539 COSMIC
COSN31566042 560 COSMIC
COSN22494288 571 COSMIC
COSN26632590 578 COSMIC
COSN26549507 650 COSMIC
COSN16882639 677 COSMIC
COSN31570536 681 COSMIC
COSN20090690 759 COSMIC
COSN20090691 764 COSMIC
COSN20090692 765 COSMIC
COSN20097559 782 COSMIC
COSN20097557 783 COSMIC
COSN24445763 798 COSMIC
COSN31528626 844 COSMIC
COSN29424320 868 COSMIC
COSN30121799 1017 COSMIC
COSN30379561 1032 COSMIC
COSN29536395 1067 COSMIC
COSN31540374 1172 COSMIC
COSN8608282 1190 COSMIC
COSN30133228 1226 COSMIC
COSN31547756 1287 COSMIC
COSN9870707 1366 COSMIC
COSN31557257 1429 COSMIC
COSN28430414 1454 COSMIC
COSN20097561 1583 COSMIC
COSN20090693 1584 COSMIC
COSN30177264 1758 COSMIC
COSN20097563 1854 COSMIC
COSN30175456 1911 COSMIC
COSN28988730 1971 COSMIC
COSN20097567 1998 COSMIC
COSN14512254 2077 COSMIC
COSN6162499 2187 COSMIC
COSN20097572 2345 COSMIC
COSN20097577 2378 COSMIC
COSN20097585 2399 COSMIC
COSN31567824 2417 COSMIC
COSN20097586 2443 COSMIC
COSN31565444 2449 COSMIC
COSN31527771 2544 COSMIC
COSN20097587 2574 COSMIC
COSN25310791 2592 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs769312951 3 dbSNP
rs1356479853 5 dbSNP
rs1417054563 6 dbSNP
rs1291662309 8 dbSNP
rs1355125651 13 dbSNP
rs1477999433 15 dbSNP
rs774907966 16 dbSNP
rs1262571419 19 dbSNP
rs746511003 23 dbSNP
rs1266022752 24 dbSNP
rs1223051689 26 dbSNP
rs762469406 28 dbSNP
rs1281009465 29 dbSNP
rs768255121 32 dbSNP
rs773995774 34 dbSNP
rs1224501881 35 dbSNP
rs1342038213 37 dbSNP
rs761538716 39 dbSNP
rs767273195 40 dbSNP
rs1183301735 43 dbSNP
rs1280453654 44 dbSNP
rs1361586113 46 dbSNP
rs750371330 51 dbSNP
rs1055150415 52 dbSNP
rs535935236 62 dbSNP
rs895206019 64 dbSNP
rs1367498566 72 dbSNP
rs368333156 78 dbSNP
rs1438657423 81 dbSNP
rs1011025371 96 dbSNP
rs1398233908 106 dbSNP
rs1022529680 108 dbSNP
rs1466310695 112 dbSNP
rs1449707397 113 dbSNP
rs966609782 116 dbSNP
rs1432400219 121 dbSNP
rs1267891256 136 dbSNP
rs1037014991 137 dbSNP
rs111663303 146 dbSNP
rs895899308 150 dbSNP
rs758639190 152 dbSNP
rs1255089365 154 dbSNP
rs539447768 157 dbSNP
rs1260928348 160 dbSNP
rs1231440581 169 dbSNP
rs190019136 174 dbSNP
rs747951103 176 dbSNP
rs1302530041 177 dbSNP
rs1000383675 179 dbSNP
rs1375382182 186 dbSNP
rs1330758967 192 dbSNP
rs1033239265 194 dbSNP
rs921631029 195 dbSNP
rs1301320810 203 dbSNP
rs1009224555 220 dbSNP
rs140076586 222 dbSNP
rs1248478221 230 dbSNP
rs1437711605 232 dbSNP
rs965153756 233 dbSNP
rs569984702 251 dbSNP
rs976867604 256 dbSNP
rs1240841650 260 dbSNP
rs921029325 262 dbSNP
rs1443716392 266 dbSNP
rs984542051 267 dbSNP
rs1161423914 269 dbSNP
rs1256928138 278 dbSNP
rs910031912 280 dbSNP
rs1352132917 294 dbSNP
rs983936527 296 dbSNP
rs909782814 316 dbSNP
rs566809450 320 dbSNP
rs769657538 321 dbSNP
rs777882699 322 dbSNP
rs1166835346 333 dbSNP
rs535774785 338 dbSNP
rs1395646998 339 dbSNP
rs1036993601 343 dbSNP
rs557086499 343 dbSNP
rs973316151 343 dbSNP
rs1359753186 348 dbSNP
rs928215737 351 dbSNP
rs1440950837 353 dbSNP
rs1366182519 359 dbSNP
rs939599690 360 dbSNP
rs1044847815 364 dbSNP
rs139503265 368 dbSNP
rs1424025613 368 dbSNP
rs1334338991 369 dbSNP
rs1213395077 372 dbSNP
rs1000754711 378 dbSNP
rs13391047 385 dbSNP
rs895171995 388 dbSNP
rs892044705 395 dbSNP
rs145869902 400 dbSNP
rs375863702 420 dbSNP
rs1244234073 421 dbSNP
rs575441099 422 dbSNP
rs1010531462 423 dbSNP
rs1366620482 426 dbSNP
rs1227275190 428 dbSNP
rs1339623258 438 dbSNP
rs1019209801 439 dbSNP
rs770577957 441 dbSNP
rs537899163 444 dbSNP
rs1162114196 445 dbSNP
rs1201256636 447 dbSNP
rs1262814077 454 dbSNP
rs902605712 455 dbSNP
rs1369772159 457 dbSNP
rs1028466394 479 dbSNP
rs1477017212 483 dbSNP
rs999342431 489 dbSNP
rs1460144828 490 dbSNP
rs1194897556 494 dbSNP
rs1449227732 496 dbSNP
rs1288415502 497 dbSNP
rs1181566262 499 dbSNP
rs1249614067 501 dbSNP
rs1357143840 502 dbSNP
rs1429083548 504 dbSNP
rs1192301919 517 dbSNP
rs1370862309 529 dbSNP
rs557563898 531 dbSNP
rs1019206735 535 dbSNP
rs1317565084 536 dbSNP
rs1278608162 537 dbSNP
rs901754919 552 dbSNP
rs1329219307 555 dbSNP
rs1322818446 562 dbSNP
rs1386807795 565 dbSNP
rs1167976786 568 dbSNP
rs909761497 568 dbSNP
rs1464750376 579 dbSNP
rs1404954193 582 dbSNP
rs1423978985 586 dbSNP
rs1467884079 587 dbSNP
rs1171815308 588 dbSNP
rs768453437 589 dbSNP
rs577706195 591 dbSNP
rs1198813338 595 dbSNP
rs539828147 599 dbSNP
rs961200335 602 dbSNP
rs1382161603 604 dbSNP
rs1196902279 605 dbSNP
rs1457475278 607 dbSNP
rs1258968035 608 dbSNP
rs1293985652 610 dbSNP
rs766866868 619 dbSNP
rs1216042983 620 dbSNP
rs972591961 628 dbSNP
rs1333317272 629 dbSNP
rs560217701 631 dbSNP
rs555497630 650 dbSNP
rs1328679535 653 dbSNP
rs1445475498 657 dbSNP
rs951746094 658 dbSNP
rs573952733 670 dbSNP
rs1332954578 672 dbSNP
rs1014634634 675 dbSNP
rs1411960184 677 dbSNP
rs1423479459 686 dbSNP
rs1044428036 687 dbSNP
rs962121479 690 dbSNP
rs56316129 698 dbSNP
rs936105036 699 dbSNP
rs1054625260 713 dbSNP
rs1204318855 716 dbSNP
rs1010416763 727 dbSNP
rs891930129 727 dbSNP
rs542960187 729 dbSNP
rs1040620178 731 dbSNP
rs1434807040 734 dbSNP
rs1440956178 734 dbSNP
rs902109377 736 dbSNP
rs1349944390 737 dbSNP
rs1307008240 741 dbSNP
rs992832831 741 dbSNP
rs376406573 744 dbSNP
rs559397373 744 dbSNP
rs1377031818 748 dbSNP
rs916804099 748 dbSNP
rs1479269172 749 dbSNP
rs948091150 749 dbSNP
rs1358286733 750 dbSNP
rs1160838604 753 dbSNP
rs1043726973 759 dbSNP
rs1415417803 759 dbSNP
rs1377733082 760 dbSNP
rs1157420082 761 dbSNP
rs1346172168 763 dbSNP
rs1491202105 764 dbSNP
rs755348456 764 dbSNP
rs925401313 764 dbSNP
rs1226176628 765 dbSNP
rs1377919086 765 dbSNP
rs397987186 765 dbSNP
rs55916294 765 dbSNP
rs66775415 765 dbSNP
rs746919155 765 dbSNP
rs775930528 765 dbSNP
rs777954492 765 dbSNP
rs781062256 765 dbSNP
rs935400539 765 dbSNP
rs1453566575 769 dbSNP
rs1284434358 771 dbSNP
rs1415742065 779 dbSNP
rs998240845 780 dbSNP
rs1241113292 783 dbSNP
rs1296792724 783 dbSNP
rs1287477152 784 dbSNP
rs199650939 785 dbSNP
rs1308688499 786 dbSNP
rs1393562367 787 dbSNP
rs1413259955 789 dbSNP
rs1387834494 792 dbSNP
rs1302669593 793 dbSNP
rs1052450520 796 dbSNP
rs1476036535 798 dbSNP
rs1260734677 800 dbSNP
rs1192758373 801 dbSNP
rs1488569833 812 dbSNP
rs182337348 813 dbSNP
rs1218656695 814 dbSNP
rs1320631864 817 dbSNP
rs186621097 820 dbSNP
rs1234728325 823 dbSNP
rs1315725942 824 dbSNP
rs991110365 829 dbSNP
rs1289288780 835 dbSNP
rs1316551401 837 dbSNP
rs1238114094 839 dbSNP
rs1363195712 848 dbSNP
rs1291143498 849 dbSNP
rs1258717776 850 dbSNP
rs1434347680 850 dbSNP
rs1005222454 851 dbSNP
rs916577340 854 dbSNP
rs771744346 857 dbSNP
rs1421833464 862 dbSNP
rs1489437448 866 dbSNP
rs946667327 867 dbSNP
rs1044134018 868 dbSNP
rs1421526404 870 dbSNP
rs1189427118 875 dbSNP
rs1488146359 876 dbSNP
rs902567033 877 dbSNP
rs1016649726 880 dbSNP
rs935442732 883 dbSNP
rs1456159842 889 dbSNP
rs1257041929 890 dbSNP
rs1218329508 891 dbSNP
rs1267560498 892 dbSNP
rs961167641 896 dbSNP
rs972560758 898 dbSNP
rs1183698330 900 dbSNP
rs1367565367 904 dbSNP
rs775769162 904 dbSNP
rs545238036 916 dbSNP
rs1418115506 924 dbSNP
rs564415325 925 dbSNP
rs1398296526 929 dbSNP
rs1330970122 931 dbSNP
rs1462263302 932 dbSNP
rs996039659 945 dbSNP
rs1173744576 946 dbSNP
rs1157434768 953 dbSNP
rs1370511744 954 dbSNP
rs1028830691 976 dbSNP
rs887696962 979 dbSNP
rs1425853528 981 dbSNP
rs192751461 984 dbSNP
rs546657171 985 dbSNP
rs1015018401 997 dbSNP
rs1411822353 1001 dbSNP
rs1308686399 1008 dbSNP
rs935988862 1017 dbSNP
rs1389844363 1018 dbSNP
rs1304636624 1021 dbSNP
rs1253412801 1024 dbSNP
rs913332065 1036 dbSNP
rs946173533 1037 dbSNP
rs1312067226 1042 dbSNP
rs1304816487 1045 dbSNP
rs961810856 1056 dbSNP
rs1236537759 1059 dbSNP
rs1246635534 1060 dbSNP
rs981624607 1061 dbSNP
rs1398995465 1062 dbSNP
rs541511265 1066 dbSNP
rs1206731788 1070 dbSNP
rs1175469684 1073 dbSNP
rs1232930706 1079 dbSNP
rs1035183692 1088 dbSNP
rs1417265589 1093 dbSNP
rs1181953656 1094 dbSNP
rs531912545 1096 dbSNP
rs932284278 1101 dbSNP
rs566549485 1105 dbSNP
rs1483146442 1106 dbSNP
rs1281609907 1107 dbSNP
rs990994447 1112 dbSNP
rs529503226 1117 dbSNP
rs1285395227 1120 dbSNP
rs1239933873 1123 dbSNP
rs1337694363 1124 dbSNP
rs1310847491 1126 dbSNP
rs889418074 1128 dbSNP
rs968717037 1133 dbSNP
rs1398035971 1139 dbSNP
rs896933824 1149 dbSNP
rs993949802 1151 dbSNP
rs1158583248 1157 dbSNP
rs1024175488 1162 dbSNP
rs971718243 1173 dbSNP
rs1383971426 1174 dbSNP
rs62203617 1176 dbSNP
rs1445016847 1186 dbSNP
rs1258622823 1188 dbSNP
rs923961139 1190 dbSNP
rs957328978 1195 dbSNP
rs1171255494 1196 dbSNP
rs1261653233 1214 dbSNP
rs935427155 1217 dbSNP
rs1352968715 1219 dbSNP
rs1263849732 1220 dbSNP
rs990166589 1224 dbSNP
rs1294895886 1229 dbSNP
rs150557588 1229 dbSNP
rs757326451 1238 dbSNP
rs1339681534 1239 dbSNP
rs1318929759 1241 dbSNP
rs1304745757 1243 dbSNP
rs1387926555 1246 dbSNP
rs923363709 1248 dbSNP
rs569256171 1249 dbSNP
rs1461639313 1255 dbSNP
rs931774584 1258 dbSNP
rs1167481412 1268 dbSNP
rs1477047448 1270 dbSNP
rs1383777984 1274 dbSNP
rs538046463 1274 dbSNP
rs1194540990 1275 dbSNP
rs1050238448 1279 dbSNP
rs34889175 1283 dbSNP
rs1265320207 1287 dbSNP
rs1213216658 1288 dbSNP
rs762049936 1288 dbSNP
rs1469063610 1298 dbSNP
rs946140941 1305 dbSNP
rs1327565186 1308 dbSNP
rs1216528156 1315 dbSNP
rs887668929 1325 dbSNP
rs1371311589 1330 dbSNP
rs1270600628 1333 dbSNP
rs976646921 1340 dbSNP
rs1006581786 1342 dbSNP
rs1299975828 1343 dbSNP
rs932151661 1345 dbSNP
rs558362451 1348 dbSNP
rs1328906372 1350 dbSNP
rs1464344827 1353 dbSNP
rs1306355853 1356 dbSNP
rs754369723 1358 dbSNP
rs1396193504 1378 dbSNP
rs897527587 1394 dbSNP
rs1002618983 1399 dbSNP
rs888048852 1400 dbSNP
rs1257462369 1413 dbSNP
rs551719785 1418 dbSNP
rs1193024049 1420 dbSNP
rs1183422773 1422 dbSNP
rs1038030320 1432 dbSNP
rs993971727 1432 dbSNP
rs958448159 1433 dbSNP
rs1197399092 1435 dbSNP
rs533907319 1435 dbSNP
rs577952917 1436 dbSNP
rs907001079 1437 dbSNP
rs545047242 1442 dbSNP
rs1012390919 1450 dbSNP
rs147511979 1450 dbSNP
rs1023836841 1451 dbSNP
rs200348175 1454 dbSNP
rs957296959 1455 dbSNP
rs1445537354 1456 dbSNP
rs1011569826 1458 dbSNP
rs553766542 1462 dbSNP
rs1020329588 1466 dbSNP
rs184749255 1473 dbSNP
rs563690457 1475 dbSNP
rs141032253 1479 dbSNP
rs1435943081 1479 dbSNP
rs3049424 1479 dbSNP
rs1250686878 1480 dbSNP
rs542898802 1481 dbSNP
rs556496061 1505 dbSNP
rs953549720 1514 dbSNP
rs1183639427 1516 dbSNP
rs1403581004 1517 dbSNP
rs576326791 1520 dbSNP
rs113516639 1524 dbSNP
rs1350009989 1530 dbSNP
rs1283257359 1537 dbSNP
rs554738965 1538 dbSNP
rs1350868696 1539 dbSNP
rs1280930313 1548 dbSNP
rs909455806 1559 dbSNP
rs565118323 1566 dbSNP
rs1353930545 1568 dbSNP
rs115051385 1569 dbSNP
rs1212333804 1573 dbSNP
rs1415933194 1575 dbSNP
rs188516251 1580 dbSNP
rs1323842576 1582 dbSNP
rs923332815 1584 dbSNP
rs1408940652 1593 dbSNP
rs929639325 1594 dbSNP
rs193066281 1600 dbSNP
rs1471959052 1607 dbSNP
rs765364493 1609 dbSNP
rs906964397 1624 dbSNP
rs1050206939 1625 dbSNP
rs1216934990 1627 dbSNP
rs1260951884 1627 dbSNP
rs1001357047 1629 dbSNP
rs750499229 1630 dbSNP
rs145890871 1631 dbSNP
rs1293050990 1632 dbSNP
rs909064689 1632 dbSNP
rs1234301794 1633 dbSNP
rs1242109468 1634 dbSNP
rs56002442 1634 dbSNP
rs1474693237 1638 dbSNP
rs1430043627 1639 dbSNP
rs1193039125 1641 dbSNP
rs1345836340 1643 dbSNP
rs941957100 1647 dbSNP
rs1320409901 1652 dbSNP
rs1403806424 1653 dbSNP
rs529246377 1655 dbSNP
rs1430015514 1662 dbSNP
rs1476067695 1663 dbSNP
rs1421340622 1665 dbSNP
rs1185838797 1669 dbSNP
rs1036722288 1672 dbSNP
rs1486176946 1673 dbSNP
rs549005681 1675 dbSNP
rs1480249973 1679 dbSNP
rs1174460832 1686 dbSNP
rs1055664040 1687 dbSNP
rs16839349 1690 dbSNP
rs1011538294 1693 dbSNP
rs1002914536 1695 dbSNP
rs1337437756 1697 dbSNP
rs755339491 1697 dbSNP
rs1293936391 1698 dbSNP
rs569885719 1698 dbSNP
rs1363351698 1699 dbSNP
rs532675691 1702 dbSNP
rs1438818255 1704 dbSNP
rs1344590349 1705 dbSNP
rs1030400664 1706 dbSNP
rs1462773656 1712 dbSNP
rs1352514967 1714 dbSNP
rs1304466402 1715 dbSNP
rs953617674 1715 dbSNP
rs543744667 1716 dbSNP
rs552493046 1718 dbSNP
rs199580003 1720 dbSNP
rs532057519 1726 dbSNP
rs1195084821 1728 dbSNP
rs894216604 1739 dbSNP
rs1456198372 1750 dbSNP
rs551653869 1751 dbSNP
rs1204334254 1753 dbSNP
rs571825571 1753 dbSNP
rs919521970 1755 dbSNP
rs1275727213 1756 dbSNP
rs1232129089 1760 dbSNP
rs1370368359 1767 dbSNP
rs929633941 1768 dbSNP
rs1443374242 1782 dbSNP
rs981537949 1784 dbSNP
rs1297338103 1785 dbSNP
rs1462311047 1785 dbSNP
rs1356169672 1791 dbSNP
rs1224723017 1796 dbSNP
rs928390463 1800 dbSNP
rs1055631089 1803 dbSNP
rs533613371 1803 dbSNP
rs937118442 1803 dbSNP
rs1176915099 1809 dbSNP
rs114234807 1821 dbSNP
rs947218018 1823 dbSNP
rs1445795901 1831 dbSNP
rs968654922 1831 dbSNP
rs1306603836 1840 dbSNP
rs3049425 1840 dbSNP
rs3832044 1840 dbSNP
rs1041634079 1841 dbSNP
rs145651903 1844 dbSNP
rs997515870 1845 dbSNP
rs1159408246 1846 dbSNP
rs1420555349 1846 dbSNP
rs1269700649 1849 dbSNP
rs1007560644 1850 dbSNP
rs75041294 1855 dbSNP
rs80203387 1856 dbSNP
rs1016311766 1864 dbSNP
rs1001046798 1867 dbSNP
rs1213064983 1870 dbSNP
rs1254294519 1872 dbSNP
rs1470622333 1873 dbSNP
rs963484603 1875 dbSNP
rs1239997733 1884 dbSNP
rs972222773 1884 dbSNP
rs1319020252 1886 dbSNP
rs1026548460 1887 dbSNP
rs971415546 1893 dbSNP
rs981121072 1904 dbSNP
rs1406930086 1906 dbSNP
rs1398889059 1914 dbSNP
rs928327261 1915 dbSNP
rs937023991 1933 dbSNP
rs1455010941 1941 dbSNP
rs1415231545 1944 dbSNP
rs1163146032 1952 dbSNP
rs1475104714 1964 dbSNP
rs1419153933 1966 dbSNP
rs1031629703 1967 dbSNP
rs991201984 1972 dbSNP
rs55865691 1978 dbSNP
rs1403868138 1979 dbSNP
rs536247730 1980 dbSNP
rs1466373668 1988 dbSNP
rs113624520 1990 dbSNP
rs3049426 1990 dbSNP
rs397826826 1990 dbSNP
rs376615707 1991 dbSNP
rs61671926 1991 dbSNP
rs556229312 1993 dbSNP
rs386392225 1995 dbSNP
rs903094849 1997 dbSNP
rs201256758 1999 dbSNP
rs869270754 1999 dbSNP
rs953447273 2000 dbSNP
rs200557160 2001 dbSNP
rs537527095 2001 dbSNP
rs1295603960 2002 dbSNP
rs1383419841 2004 dbSNP
rs1248818674 2009 dbSNP
rs1051689491 2022 dbSNP
rs889082835 2024 dbSNP
rs1395638217 2030 dbSNP
rs1046177 2033 dbSNP
rs1293229738 2037 dbSNP
rs1165433313 2039 dbSNP
rs1359312987 2040 dbSNP
rs1007529301 2043 dbSNP
rs1220416103 2043 dbSNP
rs1275150760 2044 dbSNP
rs1438644743 2045 dbSNP
rs571146826 2049 dbSNP
rs1016278971 2051 dbSNP
rs1251317937 2053 dbSNP
rs779982926 2053 dbSNP
rs1193214552 2054 dbSNP
rs1232108481 2056 dbSNP
rs1468459355 2060 dbSNP
rs78687925 2065 dbSNP
rs1193870933 2068 dbSNP
rs571882230 2069 dbSNP
rs1385827303 2070 dbSNP
rs1372803582 2071 dbSNP
rs146730504 2071 dbSNP
rs199824651 2072 dbSNP
rs1408580618 2073 dbSNP
rs993612497 2073 dbSNP
rs189285132 2074 dbSNP
rs558434566 2077 dbSNP
rs1393314449 2078 dbSNP
rs1173167612 2079 dbSNP
rs1251032612 2079 dbSNP
rs1437038174 2079 dbSNP
rs1454830673 2079 dbSNP
rs1207170445 2080 dbSNP
rs971925663 2081 dbSNP
rs752410259 2083 dbSNP
rs539630447 2089 dbSNP
rs775201023 2090 dbSNP
rs1346608132 2091 dbSNP
rs1277445302 2092 dbSNP
rs1440411742 2093 dbSNP
rs1410185549 2099 dbSNP
rs1335526728 2100 dbSNP
rs919146799 2101 dbSNP
rs772656077 2102 dbSNP
rs181745988 2108 dbSNP
rs1454954843 2116 dbSNP
rs1316144125 2118 dbSNP
rs1382727797 2119 dbSNP
rs991177766 2131 dbSNP
rs1253156351 2133 dbSNP
rs1157021998 2134 dbSNP
rs145029807 2134 dbSNP
rs751689972 2135 dbSNP
rs1484619311 2139 dbSNP
rs968492623 2150 dbSNP
rs1195292577 2155 dbSNP
rs1210933648 2155 dbSNP
rs977251127 2156 dbSNP
rs1222820082 2159 dbSNP
rs573068911 2160 dbSNP
rs1271222754 2162 dbSNP
rs1462797306 2164 dbSNP
rs1293235988 2166 dbSNP
rs1205378842 2167 dbSNP
rs894185570 2168 dbSNP
rs1360932933 2169 dbSNP
rs1316393097 2170 dbSNP
rs1400322215 2171 dbSNP
rs1385956260 2172 dbSNP
rs1161029033 2174 dbSNP
rs879151639 2176 dbSNP
rs1417018183 2177 dbSNP
rs751765175 2179 dbSNP
rs1243469581 2183 dbSNP
rs145407519 2184 dbSNP
rs933177936 2185 dbSNP
rs948442929 2194 dbSNP
rs767754622 2201 dbSNP
rs1052089011 2204 dbSNP
rs1210918172 2206 dbSNP
rs910487928 2213 dbSNP
rs755958298 2217 dbSNP
rs755710878 2230 dbSNP
rs1268430625 2234 dbSNP
rs1430106076 2237 dbSNP
rs904271832 2237 dbSNP
rs1322835964 2240 dbSNP
rs1460119593 2240 dbSNP
rs899247443 2242 dbSNP
rs993579983 2252 dbSNP
rs1407004052 2253 dbSNP
rs1417313501 2256 dbSNP
rs1393945207 2260 dbSNP
rs1475468155 2263 dbSNP
rs1470723941 2265 dbSNP
rs1001415852 2268 dbSNP
rs1047808178 2269 dbSNP
rs540873061 2272 dbSNP
rs777653530 2273 dbSNP
rs997748380 2274 dbSNP
rs1323954893 2276 dbSNP
rs768396371 2285 dbSNP
rs151006397 2290 dbSNP
rs1030288370 2295 dbSNP
rs1214014565 2303 dbSNP
rs953416166 2305 dbSNP
rs986102781 2306 dbSNP
rs1298454638 2311 dbSNP
rs1327522867 2322 dbSNP
rs1342937818 2322 dbSNP
rs1016723025 2324 dbSNP
rs1034330509 2324 dbSNP
rs201437772 2324 dbSNP
rs10642583 2325 dbSNP
rs1489686263 2325 dbSNP
rs201168620 2325 dbSNP
rs34250178 2325 dbSNP
rs796700018 2325 dbSNP
rs963513401 2325 dbSNP
rs1012583413 2326 dbSNP
rs1021342547 2327 dbSNP
rs879090988 2329 dbSNP
rs972281277 2330 dbSNP
rs200033686 2331 dbSNP
rs140565760 2333 dbSNP
rs1460659334 2334 dbSNP
rs145741694 2335 dbSNP
rs1302272394 2336 dbSNP
rs1198498792 2338 dbSNP
rs749242910 2338 dbSNP
rs1297457801 2347 dbSNP
rs1263820389 2350 dbSNP
rs1372342829 2350 dbSNP
rs368434170 2353 dbSNP
rs532613950 2353 dbSNP
rs987345091 2353 dbSNP
rs1177768876 2356 dbSNP
rs552333015 2356 dbSNP
rs547454831 2357 dbSNP
rs943323414 2358 dbSNP
rs1177049232 2361 dbSNP
rs1483635693 2368 dbSNP
rs35974800 2368 dbSNP
rs376527307 2368 dbSNP
rs528750670 2368 dbSNP
rs760869720 2368 dbSNP
rs1256704932 2369 dbSNP
rs920554015 2374 dbSNP
rs1305949711 2375 dbSNP
rs560203182 2376 dbSNP
rs992776271 2381 dbSNP
rs1402262423 2387 dbSNP
rs1451162373 2391 dbSNP
rs200008298 2391 dbSNP
rs699309 2397 dbSNP
rs1468633787 2400 dbSNP
rs753259946 2400 dbSNP
rs139644053 2402 dbSNP
rs796939899 2406 dbSNP
rs1042746939 2408 dbSNP
rs1011123857 2409 dbSNP
rs1382103716 2412 dbSNP
rs1186387474 2415 dbSNP
rs1316348129 2422 dbSNP
rs1256937072 2429 dbSNP
rs533067810 2429 dbSNP
rs1202257865 2430 dbSNP
rs201443538 2430 dbSNP
rs760151886 2430 dbSNP
rs770988669 2432 dbSNP
rs1491028013 2433 dbSNP
rs748215747 2433 dbSNP
rs778625506 2436 dbSNP
rs1282946154 2439 dbSNP
rs1314174976 2440 dbSNP
rs183627451 2440 dbSNP
rs531875101 2441 dbSNP
rs146305485 2442 dbSNP
rs3049428 2442 dbSNP
rs552059177 2442 dbSNP
rs34084933 2443 dbSNP
rs1053015606 2445 dbSNP
rs1230858850 2446 dbSNP
rs1369551740 2446 dbSNP
rs1262225331 2457 dbSNP
rs1351351076 2459 dbSNP
rs745363886 2477 dbSNP
rs1204412831 2478 dbSNP
rs1426834035 2478 dbSNP
rs1189423855 2484 dbSNP
rs1466475120 2494 dbSNP
rs1250897736 2496 dbSNP
rs551133748 2498 dbSNP
rs752494033 2502 dbSNP
rs775868997 2502 dbSNP
rs369502136 2503 dbSNP
rs1224550163 2504 dbSNP
rs1030928106 2507 dbSNP
rs189337615 2509 dbSNP
rs1324222118 2512 dbSNP
rs1368348436 2512 dbSNP
rs1386591462 2512 dbSNP
rs1267781023 2515 dbSNP
rs539670323 2521 dbSNP
rs1161758631 2522 dbSNP
rs527885411 2522 dbSNP
rs1364695624 2525 dbSNP
rs1235016585 2526 dbSNP
rs369262237 2530 dbSNP
rs1251381404 2531 dbSNP
rs939492959 2533 dbSNP
rs1055623335 2537 dbSNP
rs1451990275 2537 dbSNP
rs1194001660 2546 dbSNP
rs573069538 2547 dbSNP
rs1274656481 2548 dbSNP
rs946881001 2549 dbSNP
rs997715651 2552 dbSNP
rs1030505931 2557 dbSNP
rs1343898755 2561 dbSNP
rs1379139063 2563 dbSNP
rs1431739260 2563 dbSNP
rs1478516962 2563 dbSNP
rs555070274 2563 dbSNP
rs5837477 2563 dbSNP
rs71015725 2563 dbSNP
rs796676354 2563 dbSNP
rs867723206 2563 dbSNP
rs1393320912 2564 dbSNP
rs1491533803 2564 dbSNP
rs200411381 2565 dbSNP
rs575236635 2565 dbSNP
rs1336071510 2566 dbSNP
rs1484390328 2566 dbSNP
rs866252296 2573 dbSNP
rs1491196034 2574 dbSNP
rs201809263 2574 dbSNP
rs1491382220 2575 dbSNP
rs902792660 2575 dbSNP
rs201867104 2576 dbSNP
rs1361468524 2580 dbSNP
rs1222645131 2582 dbSNP
rs1290332486 2583 dbSNP
rs1350367060 2585 dbSNP
rs998911982 2593 dbSNP
rs1487317014 2597 dbSNP
rs1178503941 2600 dbSNP
rs1031368870 2604 dbSNP
rs761528084 2606 dbSNP
rs1177155070 2607 dbSNP
rs1404624896 2609 dbSNP
rs767256298 2610 dbSNP
rs1156551302 2622 dbSNP
rs1387678252 2630 dbSNP
rs1412496579 2633 dbSNP
rs200805801 2634 dbSNP
rs1163041723 2640 dbSNP
rs1236373544 2648 dbSNP
rs1007493517 2654 dbSNP
rs1187658266 2656 dbSNP
rs1443723906 2657 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' uacucucaaaaAAUGAACGGUCu 5'
                     ||| ||||||| 
Target 5' ------auagaUUA-UUGCCAGu 3'
 		1 - 16
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000409086.3 | 3UTR | AUAGAUUAUUGCCAGUGUCUUUUCUGUAUGCUAUAAGCAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
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57 hsa-miR-3128 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT080091 C18ORF25 chromosome 18 open reading frame 25 2 6
MIRT109617 KLHL15 kelch like family member 15 2 6
MIRT122644 E2F3 E2F transcription factor 3 2 2
MIRT204532 SLC39A10 solute carrier family 39 member 10 2 2
MIRT221677 ZNRF2 zinc and ring finger 2 2 2
MIRT230763 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 2 6
MIRT273299 CCNT1 cyclin T1 2 2
MIRT283494 KCTD5 potassium channel tetramerization domain containing 5 2 4
MIRT296656 MRGBP MRG domain binding protein 2 6
MIRT301972 NUP50 nucleoporin 50 2 4
MIRT332732 QSER1 glutamine and serine rich 1 2 2
MIRT456187 ZDHHC6 zinc finger DHHC-type containing 6 2 2
MIRT460334 CAMK4 calcium/calmodulin dependent protein kinase IV 2 6
MIRT478382 DDAH1 dimethylarginine dimethylaminohydrolase 1 2 2
MIRT508130 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT511876 GOLGA7 golgin A7 2 6
MIRT512926 UBL4A ubiquitin like 4A 2 2
MIRT515891 FAM182B family with sequence similarity 182 member B 2 2
MIRT516564 PARP1 poly(ADP-ribose) polymerase 1 2 4
MIRT520203 WASL Wiskott-Aldrich syndrome like 2 2
MIRT525592 ANKRD49 ankyrin repeat domain 49 2 2
MIRT526047 GMDS GDP-mannose 4,6-dehydratase 2 2
MIRT531124 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT533604 TNPO1 transportin 1 2 2
MIRT552632 ZBTB41 zinc finger and BTB domain containing 41 2 2
MIRT555505 PNISR PNN interacting serine and arginine rich protein 2 2
MIRT560185 SPRTN SprT-like N-terminal domain 2 2
MIRT571001 REPS1 RALBP1 associated Eps domain containing 1 2 2
MIRT572913 MTMR3 myotubularin related protein 3 2 2
MIRT615263 DPF2 double PHD fingers 2 2 2
MIRT617721 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617981 ZNF234 zinc finger protein 234 2 4
MIRT618433 MYLK3 myosin light chain kinase 3 2 4
MIRT619670 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT620534 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT621303 YIPF4 Yip1 domain family member 4 2 2
MIRT625058 ZNF556 zinc finger protein 556 2 2
MIRT627224 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT641086 ZKSCAN2 zinc finger with KRAB and SCAN domains 2 2 2
MIRT645192 POLR3F RNA polymerase III subunit F 2 2
MIRT655546 PADI2 peptidyl arginine deiminase 2 2 2
MIRT663660 ZNF486 zinc finger protein 486 2 4
MIRT664038 RPL27A ribosomal protein L27a 2 2
MIRT664095 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT667034 PDE3A phosphodiesterase 3A 2 2
MIRT693811 SEC31A SEC31 homolog A, COPII coat complex component 2 2
MIRT694235 ZNF749 zinc finger protein 749 2 2
MIRT699244 SLC6A8 solute carrier family 6 member 8 2 2
MIRT702577 JARID2 jumonji and AT-rich interaction domain containing 2 2 2
MIRT702960 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT703628 FBXL3 F-box and leucine rich repeat protein 3 2 2
MIRT709931 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT712973 KANSL3 KAT8 regulatory NSL complex subunit 3 2 2
MIRT714884 RAD18 RAD18, E3 ubiquitin protein ligase 2 2
MIRT719140 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT724999 CDC27 cell division cycle 27 2 2
MIRT735830 GREM1 gremlin 1, DAN family BMP antagonist 2 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3128 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-3128 Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (MCF-7)
hsa-mir-3128 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-mir-3128 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-3128 Tamoxifen 2733525 NSC180973 approved resistant cell line (MCF7)
hsa-mir-3128 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-3128 Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-3128 Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-3128 Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-3128 Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-3128 Prednisone/Azathioprine/Methotrexate/Cyclophosphamide/Mycophenolate mofetil resistant tissue (myasthenia gravis)
hsa-miR-3128 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3128 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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