pre-miRNA Information
pre-miRNA hsa-mir-433   
Genomic Coordinates chr14: 100881886 - 100881978
Synonyms MIRN433, hsa-mir-433, miRNA433, MIR433
Description Homo sapiens miR-433 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-433-3p
Sequence 64| AUCAUGAUGGGCUCCUCGGUGU |85
Evidence Experimental
Experiments Cloned
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM8969374 10 COSMIC
COSM6770363 11 COSMIC
COSM381402 17 COSMIC
COSM8924941 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs757633556 8 dbSNP
rs781425496 17 dbSNP
rs1261819806 18 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol STARD7   
Synonyms GTT1
Description StAR related lipid transfer domain containing 7
Transcript NM_020151   
Expression
Putative miRNA Targets on STARD7
3'UTR of STARD7
(miRNA target sites are highlighted)
>STARD7|NM_020151|3'UTR
   1 CAGGCTTTGGGATAAGAAGGGACAAGGTGCTTCTAGCCCTGTCTCAGTCCGTTATCACTCTGCTGTAGAAGGGGGACATG
  81 CCACATGTATTAGAAGGCATCTGCTGTAACTTCCAGTGCAAGATAATTCAATAACTGATGTCCCATTTCATTCAGAGCCC
 161 TTATTGCTCTTATCAAAACAGAAGAAGGCTACATTTGTGGGAGTGTTGTCATATTCTCAGGCCAACTGTTTTGAAATTCG
 241 GTATCTCACTGAGCTAATCTGGAACAAACCTCTCACCTCAGGCCAGAAGGGGATGACCTCCATTTGCTTCTCTGAGTAGT
 321 TTCCTCTGCTGACATTCCAAATCCCACCATCGATTGTGCAGCGCTTTGGATTTCCTTCAGTTCTCCAGGTCCACCTGGAA
 401 AGTATAGTTGGCCAGTTGAGTCTCTCAAATGAGGGGCTACTGGGAGTGCTCTTGGTAACAATCATGATGTGAATGGGTGT
 481 GAACGATACTTGGCTATGTTAAGTGCCTTGTCCGCACCTTGCTTTTATCTCTAGAGACATGAAGTTATTATTAATTTTTT
 561 TTTTTTTTAAGTAGAGATGGAGTTTCACTCTGTTTCCCAGGCTGGTCTTGAACTCCTGGGCCATGCCTGGCCAGGGACAT
 641 GAATTTGTACAAAGAAATTTCCCTCCCTGCCTGCACAATATCACCCATTGACTCACCTTATCCAAAGCAAGTTTCCTGTG
 721 AATCGGCCAGTTCTTCTATATTCATTGGATCATTGCCTCCTTCCTAACCTTCCCCATTTACCAAGAACACTGGGAGACTA
 801 ATCCTTTTAGATAGTAGCTTTTTGATGCTCAAAACATCACATTTAAATTTAGTTTAAAAATTTTTTAACTTTTGTGTCAA
 881 ATAGGAGTTGAGGAATTGAGCAGGATTCTACCCTAGTCCGATTGTATAGAAAACACCATTTTGATTCAGGTATTATTTTT
 961 CATATTTCAGGTTTGACTTGTTCTTTTCAGAAGGCTAAAGTCAGAGGAATGGGGGCTGGGCCACTCCCTTGGAGCTCTCA
1041 GATCTACAGACAAGCTGTGTGAATGCATAGATGTAATCTTGTCTCAAATACTAATACAGTGGAGATTTGGTTTATGTTAC
1121 CATTAAGTTCCTCTAAAAAGTTTTTCTTCCTCTCTTCAGAGCCAAAATAAAAGTGAACTACACTGTTCAGATAAGGTCAC
1201 AATCTGATGCTGTCAGTTTGACCGAGCTGGTTTTGCTTATGGTCATGCTGCAATTTGTTAGAATAATAGGGATCAAGTTT
1281 TAAATCCTCCTCCTTCCCTTTTTTCTGGAGTCTTGAGGGCCAGAGTTTTTGTTTTTGTTTTTGTTTTTGTTTTCCTGCTT
1361 GCTACTGTTTTGTGGTGTTGAAAAGTGGTTTAAACCTGAGACTAACTTAAACACTTCCTTGACCTTCTTGTTGCCTGTTC
1441 ATTTTTGTGCCAAGGAAGTAGCTGCCCCAGTGTATGTCTTGCCTTCTCCGCGTCATTGTTGGAAGAGGAGAGATGCATCG
1521 AGCAGTCCCAGCTGCTTTTCATTTATTACTTCTTCTTTCCAGGACCTGACAGAAGTCAGGGAAGAGTCCCTGGGTTATGT
1601 CCAAACTTAGCACCTGCAATTGTTGGGATGTGGATGGATGTGTGCATAAGAGAGAGAGAGAATATGTGTGTGTGTGTGTG
1681 CGTCTGCGAGCGCACACACATGCACAAGTGCGAAGGAGTTGCGGTTGCTCCATGTTCTGACTTAGGGCAATTTGATTCTG
1761 CACTTGGGGTCTGTCTGTACAGTTACTCATGTCATTGTAATGATTTCACTCCTAACTGTGACATTTTTATCAAATGTGTG
1841 AATAAATACATAAAGATTGGTACAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugUGGCUC-CUCGGG---------UAGUACUa 5'
            ||:|:| | ||:|         ||||||| 
Target 5' ctACTGGGAGTGCTCTTGGTAACAATCATGAt 3'
437 - 468 148.00 -18.30
2
miRNA  3' ugUGGCUC--CU----CGGG---UAGUACua 5'
            ||||||  |:    ||::   :|||||  
Target 5' tgACCGAGCTGGTTTTGCTTATGGTCATGct 3'
1219 - 1249 116.00 -14.62
3
miRNA  3' ugUGGCUCCUCGGGUAGUACUa 5'
            |: ||  |  ||||: ||| 
Target 5' gtATAGAAAACACCATTTTGAt 3'
924 - 945 108.00 -7.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30536066 43 COSMIC
COSN30454044 49 COSMIC
COSN31508402 76 COSMIC
COSN31492867 78 COSMIC
COSN30460579 81 COSMIC
COSN31492870 89 COSMIC
COSN30536684 90 COSMIC
COSN31606261 93 COSMIC
COSN31567834 238 COSMIC
COSN31552830 239 COSMIC
COSN14628084 267 COSMIC
COSN26557323 310 COSMIC
COSN8610355 318 COSMIC
COSN25304608 497 COSMIC
COSN31553595 507 COSMIC
COSN25346329 511 COSMIC
COSN14842411 1073 COSMIC
COSN26224666 1190 COSMIC
COSN22016941 1274 COSMIC
COSN27528959 1349 COSMIC
COSN31522978 1388 COSMIC
COSN31569388 1422 COSMIC
COSN31546958 1478 COSMIC
COSN16854230 1491 COSMIC
COSN27435178 1665 COSMIC
COSN30173675 1666 COSMIC
COSN31538663 1681 COSMIC
COSN21957379 1831 COSMIC
COSN31607169 1844 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1384663662 1 dbSNP
rs1315686517 4 dbSNP
rs1293870021 8 dbSNP
rs1398229131 11 dbSNP
rs1343526947 12 dbSNP
rs770779119 15 dbSNP
rs1337004963 16 dbSNP
rs747015335 17 dbSNP
rs757991377 20 dbSNP
rs777253929 26 dbSNP
rs376263438 27 dbSNP
rs1360746747 33 dbSNP
rs1448462576 34 dbSNP
rs894552666 36 dbSNP
rs188075047 38 dbSNP
rs1167973879 39 dbSNP
rs373023568 41 dbSNP
rs747767075 43 dbSNP
rs778566562 44 dbSNP
rs1290229048 45 dbSNP
rs755321257 46 dbSNP
rs765830262 46 dbSNP
rs376428368 47 dbSNP
rs756570307 50 dbSNP
rs539630505 51 dbSNP
rs1279196034 62 dbSNP
rs1484455451 65 dbSNP
rs907861968 69 dbSNP
rs1183733831 79 dbSNP
rs1358387897 87 dbSNP
rs1251824148 89 dbSNP
rs866131227 94 dbSNP
rs1175467118 101 dbSNP
rs1427144230 118 dbSNP
rs1317612634 119 dbSNP
rs1414857441 122 dbSNP
rs1405903106 129 dbSNP
rs930634536 130 dbSNP
rs1375085935 136 dbSNP
rs1433026447 140 dbSNP
rs1310084305 143 dbSNP
rs1351249687 144 dbSNP
rs758019947 163 dbSNP
rs1278333616 167 dbSNP
rs1370306044 171 dbSNP
rs749927459 173 dbSNP
rs548444768 176 dbSNP
rs922232724 181 dbSNP
rs779028225 189 dbSNP
rs531254818 193 dbSNP
rs1415823921 197 dbSNP
rs976430484 204 dbSNP
rs4907229 207 dbSNP
rs1474231700 209 dbSNP
rs990920677 211 dbSNP
rs1201776642 217 dbSNP
rs1248407729 226 dbSNP
rs753593611 228 dbSNP
rs1192779179 237 dbSNP
rs552162292 239 dbSNP
rs957493078 240 dbSNP
rs1240700669 247 dbSNP
rs183297342 253 dbSNP
rs1170774101 262 dbSNP
rs764010681 270 dbSNP
rs1452730094 272 dbSNP
rs1292570978 274 dbSNP
rs560257982 279 dbSNP
rs541658760 283 dbSNP
rs1333509027 288 dbSNP
rs1352132480 292 dbSNP
rs1278520028 293 dbSNP
rs999492472 307 dbSNP
rs1359366979 320 dbSNP
rs766970113 321 dbSNP
rs1035625792 346 dbSNP
rs191555053 347 dbSNP
rs982377641 351 dbSNP
rs1436849425 352 dbSNP
rs113132446 354 dbSNP
rs967401308 363 dbSNP
rs1451675270 364 dbSNP
rs1213060269 367 dbSNP
rs894596665 369 dbSNP
rs1351559971 380 dbSNP
rs566023863 381 dbSNP
rs1188919782 390 dbSNP
rs1020052 397 dbSNP
rs957712441 422 dbSNP
rs1166231340 426 dbSNP
rs1393785295 427 dbSNP
rs373695190 436 dbSNP
rs1046987256 437 dbSNP
rs1392877894 440 dbSNP
rs753503982 447 dbSNP
rs1437757062 451 dbSNP
rs929910721 461 dbSNP
rs922526042 464 dbSNP
rs1325495334 469 dbSNP
rs1028007452 484 dbSNP
rs1428294568 484 dbSNP
rs74759684 485 dbSNP
rs1232121241 486 dbSNP
rs900993461 488 dbSNP
rs1331068695 492 dbSNP
rs1209133845 494 dbSNP
rs1438302929 497 dbSNP
rs1445062179 504 dbSNP
rs142941676 509 dbSNP
rs1041313489 513 dbSNP
rs796264329 514 dbSNP
rs1164242593 515 dbSNP
rs370540613 517 dbSNP
rs957546763 531 dbSNP
rs886988124 538 dbSNP
rs1459224259 540 dbSNP
rs1048351641 548 dbSNP
rs1249027718 552 dbSNP
rs62153009 553 dbSNP
rs1384776409 554 dbSNP
rs539419966 554 dbSNP
rs80016939 555 dbSNP
rs1335828636 562 dbSNP
rs1467672987 562 dbSNP
rs1413651564 569 dbSNP
rs535274006 569 dbSNP
rs977605858 573 dbSNP
rs1199937297 584 dbSNP
rs1305406973 587 dbSNP
rs1352256100 591 dbSNP
rs968060363 598 dbSNP
rs1260059836 599 dbSNP
rs920616216 602 dbSNP
rs1024551514 605 dbSNP
rs1348336128 606 dbSNP
rs568417582 608 dbSNP
rs1201931307 614 dbSNP
rs938126139 625 dbSNP
rs1281031898 628 dbSNP
rs928151831 630 dbSNP
rs1187317263 634 dbSNP
rs982648480 637 dbSNP
rs1473606637 638 dbSNP
rs1183230827 640 dbSNP
rs966910176 658 dbSNP
rs894439761 660 dbSNP
rs1174631219 665 dbSNP
rs1375688329 666 dbSNP
rs1433640461 667 dbSNP
rs1034412598 673 dbSNP
rs1005564411 676 dbSNP
rs553835025 678 dbSNP
rs1391442629 681 dbSNP
rs1301206656 688 dbSNP
rs914125718 692 dbSNP
rs1440051179 697 dbSNP
rs1047360385 700 dbSNP
rs1275155466 705 dbSNP
rs1346878511 707 dbSNP
rs1210510189 709 dbSNP
rs774955568 724 dbSNP
rs989710510 725 dbSNP
rs1417788592 729 dbSNP
rs533776529 730 dbSNP
rs1040949750 733 dbSNP
rs1463533798 737 dbSNP
rs115275409 738 dbSNP
rs1454094356 738 dbSNP
rs767706918 740 dbSNP
rs1486034919 742 dbSNP
rs1282494747 743 dbSNP
rs1371988123 744 dbSNP
rs186840390 751 dbSNP
rs1027974943 757 dbSNP
rs1462077357 763 dbSNP
rs1394256382 766 dbSNP
rs910866958 766 dbSNP
rs1388515779 767 dbSNP
rs1326483010 775 dbSNP
rs538151151 776 dbSNP
rs554086774 789 dbSNP
rs1301569268 803 dbSNP
rs1415469877 807 dbSNP
rs1228265941 815 dbSNP
rs570451253 818 dbSNP
rs1004421041 825 dbSNP
rs1479694626 833 dbSNP
rs1192361849 836 dbSNP
rs1454245309 845 dbSNP
rs11539223 851 dbSNP
rs1179984944 855 dbSNP
rs1048321899 856 dbSNP
rs1468350069 860 dbSNP
rs1192097152 861 dbSNP
rs1391654428 863 dbSNP
rs563386731 867 dbSNP
rs995450677 867 dbSNP
rs1458975611 872 dbSNP
rs899154972 874 dbSNP
rs917490162 888 dbSNP
rs1438472180 893 dbSNP
rs1210342135 898 dbSNP
rs1055166511 919 dbSNP
rs938028210 920 dbSNP
rs1383052814 921 dbSNP
rs1277948791 924 dbSNP
rs567928761 928 dbSNP
rs1305884457 942 dbSNP
rs1354336270 952 dbSNP
rs1311299630 953 dbSNP
rs1393274000 956 dbSNP
rs1212223471 958 dbSNP
rs1371272511 960 dbSNP
rs1297861222 962 dbSNP
rs1034342066 981 dbSNP
rs1185623306 988 dbSNP
rs140495533 988 dbSNP
rs1425075234 993 dbSNP
rs945512551 1003 dbSNP
rs144046579 1006 dbSNP
rs1434426352 1024 dbSNP
rs914096276 1028 dbSNP
rs1161273331 1031 dbSNP
rs546651348 1035 dbSNP
rs989679301 1044 dbSNP
rs1288548653 1046 dbSNP
rs958316629 1053 dbSNP
rs1285421863 1063 dbSNP
rs994415017 1064 dbSNP
rs1293922866 1068 dbSNP
rs920929666 1071 dbSNP
rs79311298 1085 dbSNP
rs965083663 1089 dbSNP
rs1286930172 1098 dbSNP
rs1041002274 1103 dbSNP
rs1019755537 1104 dbSNP
rs1484049040 1114 dbSNP
rs763459554 1122 dbSNP
rs951178801 1127 dbSNP
rs562319442 1131 dbSNP
rs1026852584 1134 dbSNP
rs769393446 1137 dbSNP
rs936348871 1141 dbSNP
rs773578459 1154 dbSNP
rs767384312 1156 dbSNP
rs770256358 1178 dbSNP
rs1467567229 1179 dbSNP
rs542014052 1180 dbSNP
rs1473930525 1188 dbSNP
rs995418130 1189 dbSNP
rs531906585 1193 dbSNP
rs894357464 1198 dbSNP
rs1375127531 1201 dbSNP
rs759728684 1202 dbSNP
rs748488431 1206 dbSNP
rs1156608117 1211 dbSNP
rs182447972 1215 dbSNP
rs906551739 1216 dbSNP
rs1046900617 1223 dbSNP
rs1436745207 1223 dbSNP
rs552400764 1224 dbSNP
rs1236756000 1229 dbSNP
rs1281812913 1231 dbSNP
rs1223596426 1235 dbSNP
rs1374628526 1235 dbSNP
rs945510773 1240 dbSNP
rs1305229198 1242 dbSNP
rs1408751338 1252 dbSNP
rs892628198 1253 dbSNP
rs1053919156 1256 dbSNP
rs1279130597 1260 dbSNP
rs1484425713 1261 dbSNP
rs868731447 1262 dbSNP
rs1233408158 1270 dbSNP
rs1315254171 1281 dbSNP
rs1469511506 1289 dbSNP
rs921484769 1293 dbSNP
rs149476972 1295 dbSNP
rs917384584 1295 dbSNP
rs771812573 1300 dbSNP
rs912257427 1314 dbSNP
rs1228894594 1315 dbSNP
rs958971145 1324 dbSNP
rs1432968022 1337 dbSNP
rs1357617673 1339 dbSNP
rs202069823 1343 dbSNP
rs1414624344 1346 dbSNP
rs1361532417 1347 dbSNP
rs1291192196 1348 dbSNP
rs927546253 1348 dbSNP
rs11164062 1349 dbSNP
rs952710451 1350 dbSNP
rs1026153222 1351 dbSNP
rs553895920 1353 dbSNP
rs1215827565 1354 dbSNP
rs1464507355 1354 dbSNP
rs200172621 1354 dbSNP
rs752014362 1354 dbSNP
rs780573985 1357 dbSNP
rs1468776681 1359 dbSNP
rs1192724545 1362 dbSNP
rs1252628612 1364 dbSNP
rs1477126539 1370 dbSNP
rs540711650 1372 dbSNP
rs1415291354 1374 dbSNP
rs1169870909 1380 dbSNP
rs958540928 1381 dbSNP
rs1186778257 1385 dbSNP
rs1420394985 1388 dbSNP
rs778432907 1404 dbSNP
rs1265033744 1406 dbSNP
rs965601196 1407 dbSNP
rs1397271883 1412 dbSNP
rs1442124179 1415 dbSNP
rs1002814198 1418 dbSNP
rs145246592 1419 dbSNP
rs1485504450 1423 dbSNP
rs1270396878 1427 dbSNP
rs1338227754 1428 dbSNP
rs1265896561 1430 dbSNP
rs574797819 1430 dbSNP
rs1335334292 1440 dbSNP
rs1006712283 1447 dbSNP
rs1271113512 1451 dbSNP
rs906514795 1453 dbSNP
rs1222476531 1464 dbSNP
rs1448508987 1466 dbSNP
rs554752754 1481 dbSNP
rs1242881677 1482 dbSNP
rs566219598 1489 dbSNP
rs1009604779 1490 dbSNP
rs537615802 1491 dbSNP
rs1462361800 1492 dbSNP
rs1164828031 1498 dbSNP
rs1053809285 1501 dbSNP
rs1298225886 1503 dbSNP
rs1380821587 1513 dbSNP
rs936815219 1514 dbSNP
rs569188440 1519 dbSNP
rs1325439834 1524 dbSNP
rs1428057165 1534 dbSNP
rs1294524420 1541 dbSNP
rs1355538814 1549 dbSNP
rs1232666202 1550 dbSNP
rs1042542665 1551 dbSNP
rs1352619062 1556 dbSNP
rs553603217 1558 dbSNP
rs1391617215 1571 dbSNP
rs1163827756 1574 dbSNP
rs1477958021 1577 dbSNP
rs4826 1583 dbSNP
rs944336004 1587 dbSNP
rs1190771443 1601 dbSNP
rs896221746 1604 dbSNP
rs1268050650 1617 dbSNP
rs538663599 1619 dbSNP
rs1187929128 1620 dbSNP
rs1367196437 1630 dbSNP
rs1471375150 1634 dbSNP
rs11164061 1638 dbSNP
rs1383801028 1639 dbSNP
rs1417554130 1641 dbSNP
rs1469916237 1647 dbSNP
rs1043708 1650 dbSNP
rs1375577855 1650 dbSNP
rs3183358 1656 dbSNP
rs1046685950 1657 dbSNP
rs3183360 1658 dbSNP
rs191423125 1660 dbSNP
rs1239515798 1662 dbSNP
rs373432648 1662 dbSNP
rs557064482 1662 dbSNP
rs1278666858 1664 dbSNP
rs927557827 1668 dbSNP
rs984351376 1668 dbSNP
rs1213103595 1674 dbSNP
rs529802595 1678 dbSNP
rs567223836 1679 dbSNP
rs1491538842 1680 dbSNP
rs958508328 1680 dbSNP
rs1183161788 1681 dbSNP
rs143776494 1681 dbSNP
rs1438202557 1681 dbSNP
rs973133041 1681 dbSNP
rs548781008 1682 dbSNP
rs1302636018 1686 dbSNP
rs927179202 1687 dbSNP
rs1300504283 1688 dbSNP
rs1019710486 1691 dbSNP
rs981758394 1692 dbSNP
rs971379108 1694 dbSNP
rs953817683 1701 dbSNP
rs531773967 1711 dbSNP
rs562872887 1712 dbSNP
rs546086357 1718 dbSNP
rs956720311 1722 dbSNP
rs1348800228 1723 dbSNP
rs1461326168 1726 dbSNP
rs150332825 1734 dbSNP
rs777542113 1737 dbSNP
rs1377966052 1741 dbSNP
rs755953588 1742 dbSNP
rs1196938538 1745 dbSNP
rs1250400789 1750 dbSNP
rs1456737516 1756 dbSNP
rs1175227419 1777 dbSNP
rs1452536550 1781 dbSNP
rs1253251929 1797 dbSNP
rs530130514 1809 dbSNP
rs752443230 1816 dbSNP
rs750153419 1821 dbSNP
rs1181751504 1822 dbSNP
rs1462030623 1827 dbSNP
rs1167303404 1829 dbSNP
rs1397965408 1830 dbSNP
rs1326260188 1833 dbSNP
rs1000758801 1838 dbSNP
rs899989529 1839 dbSNP
rs1438453782 1841 dbSNP
rs1386483090 1850 dbSNP
rs554673419 1853 dbSNP
rs1194267524 1855 dbSNP
rs1228200691 1858 dbSNP
rs1339198663 1860 dbSNP
rs1257999880 1865 dbSNP
rs1013666570 1872 dbSNP
rs540693648 1872 dbSNP
rs549949160 1872 dbSNP
rs552465497 1872 dbSNP
rs896272562 1872 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugUGGCUC-CUCGGG---------UAGUACUa 5'
            ||:|:| | ||:|         ||||||| 
Target 5' cuACUGGGAGUGCUCUUGGUAACAAUCAUGAu 3'
1 - 32
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000337288.5 | 3UTR | AAGUAUAGUUGGCCAGUUGAGUCUCUCAAAUGAGGGGCUACUGGGAGUGCUCUUGGUAACAAUCAUGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000337288.5 | 3UTR | CUACUGGGAGUGCUCUUGGUAACAAUCAUGAUGUGAAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
KICH -0.562 0.01 -0.510 0.02 17 Click to see details
HNSC 0.362 0.01 0.334 0.02 37 Click to see details
LIHC -0.256 0.04 -0.261 0.04 47 Click to see details
PCPG -0.985 0.06 -1.000 0.5 3 Click to see details
LUAD 0.577 0.07 0.357 0.19 8 Click to see details
STAD 0.246 0.1 0.281 0.07 30 Click to see details
KIRC -0.27 0.1 -0.296 0.08 24 Click to see details
THCA 0.222 0.12 0.005 0.49 29 Click to see details
KIRP -0.253 0.13 -0.153 0.25 22 Click to see details
UCEC -0.272 0.16 -0.375 0.08 15 Click to see details
COAD -0.417 0.18 -0.107 0.41 7 Click to see details
ESCA -0.358 0.19 -0.167 0.35 8 Click to see details
PRAD 0.135 0.22 0.143 0.2 36 Click to see details
PAAD -0.451 0.27 -0.400 0.3 4 Click to see details
LUSC -0.096 0.29 0.208 0.12 35 Click to see details
BRCA -0.062 0.31 -0.052 0.34 68 Click to see details
BLCA -0.082 0.39 -0.095 0.37 14 Click to see details
CHOL -0.003 0.5 -0.214 0.31 8 Click to see details
CHOL -0.003 0.5 -0.214 0.31 8 Click to see details
CHOL -0.003 0.5 -0.214 0.31 8 Click to see details
CHOL -0.003 0.5 -0.214 0.31 8 Click to see details
75 hsa-miR-433-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT001201 GRB2 growth factor receptor bound protein 2 3 1
MIRT001741 FGF20 fibroblast growth factor 20 3 1
MIRT007225 RUNX2 runt related transcription factor 2 1 1
MIRT007361 CFTR cystic fibrosis transmembrane conductance regulator 1 1
MIRT016630 HDAC6 histone deacetylase 6 1 1
MIRT053561 KRAS KRAS proto-oncogene, GTPase 3 1
MIRT082022 COX6B1 cytochrome c oxidase subunit 6B1 2 4
MIRT086929 CREB1 cAMP responsive element binding protein 1 3 1
MIRT096407 C5ORF22 chromosome 5 open reading frame 22 2 2
MIRT135569 SPRYD4 SPRY domain containing 4 2 2
MIRT143520 CHD9 chromodomain helicase DNA binding protein 9 2 2
MIRT167706 HIVEP1 human immunodeficiency virus type I enhancer binding protein 1 2 8
MIRT207568 STARD7 StAR related lipid transfer domain containing 7 2 4
MIRT252052 WDR45B WD repeat domain 45B 2 2
MIRT327787 YIPF6 Yip1 domain family member 6 2 2
MIRT406144 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT437355 GBP2 guanylate binding protein 2 3 1
MIRT438242 TYMS thymidylate synthetase 3 1
MIRT438553 AZIN1 antizyme inhibitor 1 4 1
MIRT444186 SCAMP1 secretory carrier membrane protein 1 2 2
MIRT477737 EDN1 endothelin 1 2 2
MIRT483052 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT485778 ATXN1 ataxin 1 2 2
MIRT498142 FKBP1C FK506 binding protein 1C 2 4
MIRT499050 SSC5D scavenger receptor cysteine rich family member with 5 domains 2 8
MIRT501959 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT503281 TMEM229B transmembrane protein 229B 2 4
MIRT503597 ZNF780A zinc finger protein 780A 2 2
MIRT504577 UGT2B4 UDP glucuronosyltransferase family 2 member B4 2 4
MIRT506727 LONRF2 LON peptidase N-terminal domain and ring finger 2 2 2
MIRT523130 HSP90B1 heat shock protein 90 beta family member 1 2 4
MIRT531338 TGIF2LX TGFB induced factor homeobox 2 like, X-linked 2 2
MIRT534928 PTPLAD1 3-hydroxyacyl-CoA dehydratase 3 1 1
MIRT536233 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 2
MIRT537092 GPR135 G protein-coupled receptor 135 2 2
MIRT548286 FAM3C family with sequence similarity 3 member C 2 4
MIRT549143 BRWD1 bromodomain and WD repeat domain containing 1 2 2
MIRT556354 MAFK MAF bZIP transcription factor K 2 2
MIRT557839 FKBP1A FK506 binding protein 1A 2 2
MIRT564080 NSA2 NSA2, ribosome biogenesis homolog 2 2
MIRT566382 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT573110 ERBB2IP erbb2 interacting protein 2 2
MIRT574403 TFAP2A transcription factor AP-2 alpha 2 2
MIRT576063 Poteg POTE ankyrin domain family, member G 2 2
MIRT619449 TCF20 transcription factor 20 2 2
MIRT632928 FGF9 fibroblast growth factor 9 2 2
MIRT633216 ZNF584 zinc finger protein 584 2 2
MIRT633654 SLC28A1 solute carrier family 28 member 1 2 2
MIRT637198 KLHL4 kelch like family member 4 2 2
MIRT646480 SPATS2L spermatogenesis associated serine rich 2 like 2 2
MIRT648314 SCNN1G sodium channel epithelial 1 gamma subunit 2 2
MIRT648631 LEMD2 LEM domain containing 2 2 2
MIRT655902 NEK9 NIMA related kinase 9 2 2
MIRT667805 ITIH5 inter-alpha-trypsin inhibitor heavy chain family member 5 2 2
MIRT675464 NUBPL nucleotide binding protein like 2 2
MIRT675974 FAM126B family with sequence similarity 126 member B 2 2
MIRT676145 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT676895 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT677459 PDLIM3 PDZ and LIM domain 3 2 2
MIRT677533 TM4SF5 transmembrane 4 L six family member 5 2 2
MIRT677641 HAUS2 HAUS augmin like complex subunit 2 2 2
MIRT678806 HRH4 histamine receptor H4 2 2
MIRT679693 SLC1A5 solute carrier family 1 member 5 2 4
MIRT679707 RPL24 ribosomal protein L24 2 2
MIRT698822 STK38 serine/threonine kinase 38 2 2
MIRT701796 MRPS25 mitochondrial ribosomal protein S25 2 2
MIRT702220 LONRF3 LON peptidase N-terminal domain and ring finger 3 2 2
MIRT706095 ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 2 2
MIRT706502 MTMR9 myotubularin related protein 9 2 2
MIRT709780 NINJ1 ninjurin 1 2 2
MIRT713859 MBNL1 muscleblind like splicing regulator 1 2 2
MIRT715807 BBS2 Bardet-Biedl syndrome 2 2 2
MIRT724229 DGKE diacylglycerol kinase epsilon 2 2
MIRT731338 MET MET proto-oncogene, receptor tyrosine kinase 1 1
MIRT731849 HIF1A hypoxia inducible factor 1 alpha subunit 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-433 ACTH approved 16132265 Microarray adrenal gland 22128032 2012 down-regulated
miR-433 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-433 Glucose NULL 5793 Microarray endothelial cells 24394957 2014 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-433-3p Doxorubicin 31703 NSC123127 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-433-3p Paclitaxel 36314 NSC125973 approved resistant Low Serous Epithelial Ovarian Cancer cell line (A2780)
hsa-miR-433-3p Fluorouracil 3385 NSC19893 approved sensitive Low Cervical Cancer cell line (Hela)
hsa-miR-433-3p Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (HT-29)
hsa-miR-433-3p Paclitaxel 36314 NSC125973 approved resistant Low Ovarian Cancer cell line (A2780, PEO1, PEO4)
hsa-miR-433-3p Cisplatin 5460033 NSC119875 approved sensitive High Ovarian Cancer tissue
hsa-miR-433-3p Aromatase Inhibitor resistant Low Breast Cancer cell line (MCF-7)
hsa-miR-433-3p Temozolomide 5394 NSC362856 approved sensitive Low Glioma cell line (U251, U87)
hsa-miR-433-3p Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (M14) (500nM)
hsa-miR-433-3p Trametinib 11707110 NSC758246 approved resistant High Melanoma cell line (M14) (500nM)
hsa-miR-433-3p Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (M14) (1uM)
hsa-miR-433-3p Trametinib 11707110 NSC758246 approved resistant High Melanoma cell line (M14) (1uM)
hsa-miR-433-3p Cisplatin 5460033 NSC119875 approved sensitive Low Gastric Cancer cell line (MGC803)
hsa-miR-433-3p Gemcitabine 60750 NSC613327 approved resistant Low Pancreatic Ductal Adenocarcinoma tissue
hsa-miR-433-3p Sorafenib 216239 NSC747971 approved resistant High Hepatocellular Carcinoma cell line (HepG2)
hsa-miR-433-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-433-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (BAS)
hsa-miR-433-3p Doxorubicin 31703 NSC123127 approved sensitive cell line (BAS)
hsa-miR-433-3p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-433-3p Tamoxifen+Fulvestrant resistant cell line (LCC9)
hsa-miR-433-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-433-3p Methotrexate 126941 NSC740 approved resistant cell line (HT29)
hsa-miR-433-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (RPMI2650)
hsa-miR-433-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-433-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-433-3p Oxaliplatin 6857599 NSC266046 approved resistant cell line (IGROV-1)
hsa-miR-433-3p Cisplatin 5460033 NSC119875 approved resistant cell line (IGROV-1)
hsa-miR-433-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-433-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (100 ng/ml)
hsa-miR-433-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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