miRTarBase - #MIRT212867


—
pre-miRNA Information
pre-miRNA hsa-mir-3607   
Genomic Coordinates chr5: 86620497 - 86620575
Description Homo sapiens miR-3607 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3607-3p
Sequence 51| ACUGUAAACGCUUUCUGAUG |70
Evidence Experimental
Experiments Illumina
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol N4BP2   
Synonyms B3BP
Description NEDD4 binding protein 2
Transcript NM_018177   
Expression
Putative miRNA Targets on N4BP2
3'UTR of N4BP2
(miRNA target sites are highlighted)		 
>N4BP2|NM_018177|3'UTR
   1 AATAAACATCCTTGAATTAGAAGTATGAAGGTTTGTAGGTTAAAATTACTTTTATTTGCAGTAATTCAGTCAATTCTACC
  81 CTAAAGATGTGTTTTATTATAAATAATATTCAATTATGAAACAAAAAAATTATGATGTTTTTCAAAATGCAAGTGAGGTT
 161 TGATTTTTTACTGAATCAAATGCAAATGTTACCTGTTAAAGATATTACAGAGAAATTTTATTGATTACAAAATATGTAAG
 241 AAAATTATCAGCTACAGTTTTAAAGTTTAAAATGCTCTGATTGTTTCTCAGAAAAGGTTACCTTTGTATTAATTGTTGTA
 321 TGACATTTAGTAATGTCCTAAAAGTCTTTTGTGAGAGGTATTTAAAGTGCTTTGAGACCTGATTCATGCCCCCCAAAGGG
 401 TGGTATTAAAAGAGGAAAAAGGACATAGTAGTGGTAGTAAAGAAAAAAAGGAGATCTAACAAAAACACTTGAATATTTTT
 481 TATTTTCAAAACTAAACACATAAAATGCTTTTATTTTGCCATATCCTACAGGAAGGAAGACATGCTTTTGCCCTTTCTTC
 561 TGCTTTGTATATGACCTTGATCTTTTACCTTTTGTTCTGTTCTTCTGTGTGCATTTTATGGAAAGAAAGTTGGGTCTGAG
 641 ATTATATTGTAATTTTATACTTTCTATAGACAGAAAGGTTTTCAGAGAAAAAGAAATGGTTAAATATCTTCCAGATGTTG
 721 CTGCCTTATCGAAATGCTTCTAGAACTGTCTGTATAAGTCGTATTTCAGACAGTACTAAATACTTATATTTTATTTTTGA
 801 GGCATGTAATTTTAAAACTGCAGTAGGTTAAAATTCTATTAAACAAATATAGAAAATATTTTGTTTATAATTGGCCTGGT
 881 GTGGTGGCCCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTAGGTGGATCGCCTGAGGTCAGAAGTTCAAGACCAG
 961 CCTGGCCAACATGGTGAATCCCCGTCTCTATTAAAAATACAAAAATTAGCTGGGTGTGGTGGCGTGTGCCTGTAATCCCA
1041 GCTACTTGGGAGGCTGAGGCAGGAGAACCGCTTAAACCTGGGAGGTGGAGGTTGCAGTGACCCGAGATCGAGATCACACC
1121 ACTGCACTCAGCCTGGGTGACAGAGCAAGACTCCGTCTCCAAAAAAAAAAAAGAAAAAAAAGAGAAAATATTTTGGTTAT
1201 AATCATAAGAAGAATCCTTACAATTTAAAATATTTTCACTTTTATTTTGAAAAAGAGCCAACTTTCTCAAAGGAAGCTGT
1281 CATTAACTTCTGTTGTTTGGTTAGCTAATAAATTCTGTTAGTATGCAAGTTAAACCTGTGTAAAGGAGGTTATAATGTGG
1361 TAAGGTATAATTTTCCAATATGAGACAATGGCTTAAATTTGCCTTTGGAGATGGAGAATATTTTCAACATACATAATTTT
1441 AACAAATAGTTTTGTTGCTTTTTGTTAAGCTTAAAAAAAAATTTGGATCAGAAATTATAGGATTGAGCTGGTACCAAAAG
1521 AATCCTAAAGTACAGAATGGTTTTCCAAAAGAGCAGACATTTCAATGAAAATAAAACCCCAAAACATTTTTTTTATATAT
1601 CATGATTGCATGCTTTTAAAATAAGGAGGCTTATCATTGAATTTTAGTTCCATAAAAATGAAAATACATGTTTATTATTT
1681 AGAAATGGTTAGTGACTGGTATTGAAGTATTATTCACACTTATGTTTGTAATAATTTATTTAAAGAATGCCAACAGTTTA
1761 GCACACTTTTGTAATCTCTAGAACAGTTCTATACATTAAAAATAAACATTAAAAATAAAGCAGTTCCTTTAAACAACTTA
1841 CTATGAAACTATAATTGTTAATGAAATAAGATATTCCTATGTATACATTAGTATGATTTAAGGGTATGAAAAACAGTGCT
1921 AAAATGTGGAGTTAATTGGAATGTGTGCAGCTGCATACTCACTTTCTGTGTTTTTATATTTCCTTACCTAGTTTTAAAAA
2001 TCATCACTTTTCGGCACTTCAGCTAGACTTATTTCAATATTATAATTATGATTAATGAAGGAGCAGTCAGAAGTAGAGGT
2081 GTGGTATTCCGTGGGCAGAAGTCAAATGAAAAAAGCTATATTGTTTACTTGTTTACTATATCAATGTTAATATTATGCCT
2161 TATTTTGATAAATCAAATAGTATATCTTAATCATTGTTGATAAATATACAGGCAAAGTTTGAGCATCATATGTATTTTTA
2241 TGAAGCTGCTTAATTCCAAATTGCCTCCCACCCCACTATCTAGCATAGTTTAAGCAACACATAATTTTGAAAGAAAAGTT
2321 TGTAATCCCTCCTTTCTTTTTTTTGCCCATTTCTAAATCCTGTATGCCCGCAGTAAAGATAGTTTGGGGATTTTAAAAGT
2401 TTTCTCTATTACCCATTTCTAAATCCTGTATGTCAAAGATAGTTTGGAGATTATAAAAATTTTCATGTATTGGTGTAGGT
2481 TGAGTATCCCTAATGAGAAAATTCAAAATCTGAAATGCTTCAAAATCTGAAATTTTTCGAGCACAGACATGATGCTCAAA
2561 GGAAATACTCACAGAGCATTTTACATTTGTAGGTTAGCGATACTCAACAAGTAAATATAATGCACATGTTCTAAAATATC
2641 CCCCCAAACCCCAGCAATCCAAAACACTTCTGGTCCTAAGCATTTTGAGTAGGGGATACTCACTCAACCTGTATATTTGT
2721 GCTAATACATGACTCATTAGAATGATTCTTTGTAAACTTAATATTTTAAAAGTACAGCACTTCTGTAGTATGGAAGGTTT
2801 CAGTAATAATTATATTCATTCAGTAGTCTCTTACCATTATCTCCCAGATGGAAAAAGAGGACTAATGTGGAAACCCCAGA
2881 GGGTGTCCAGTTGGACCAGGGAGATATTAGACACTTAACAGTATTTTCAGTCTGTCCATCTCTTTATTCCAATGTGAGAA
2961 ATGGAAGTGTTTTTTTTTTTACGTTTATTGGCTCTTCATATTTCTCTACATTATTTTTAATGTGCAGTTTCTTCAATTGG
3041 TTAGTATTTCCATACTATTTGCAACTTTATGGCCTTTAAATATAGGACATATTATATAGCAGAAATTTTGACTTTAAATC
3121 CTCTTGAGTAGTATATTTTGAGAAGAAAAGCTATACTGCTCTTCTGGATGGTTTCCATCCTTTATTTAGGTCTTTTCTTT
3201 TTGAATTCAAGTGTTTTGTATGCTTAGAAAGTAGACATGTATAATATTGAGATCGGTTATTTCTGAGCTGGAAATTGGAA
3281 ACTTTGGAAACTCAGGAAATTGCTCTGACAATGTTTTAACTGCTCTCAATTTAAGAAAATGACGAAATGTATAAAAAAGA
3361 CAAAAATAACGTGTGCTGTTTTTTCCAAGTGCTTTTTCTAAGTGCTTTTCCATTGTGCAATGAGGTGAAGTTTGGTAATT
3441 TTTCGGTGTAGTAGTTAAATATTGCTCAATTTTTATTTACATGTAAAGAAAACAGATTTAAATGTTTATGTGGCCAAAAG
3521 GTGTCATTTAAAAGGTAAAATAAGTTTATGTAGAATGTATGTTCATGGTGCTTATTTTTAAAATGTAATTCAAGTTTACA
3601 GTATTACTTAATGCTTCTTTACAGAATTTAATAGAGAAACAAGGCTAGAACACATCTACATCCTGAAGAGCCGTTTATAA
3681 CTTCATATTATATGATGACAAAGTTCATTATTTTCCTTAAAGTTGAGCAATTGACTTTTATGGTCCAATGATGAACTTAT
3761 TATTAATAAATGATTGAGTTAACTGTGAGGCTTCTCATTAAAATACAATATTGCAGCTATCAGTTGGAGAATATATTATA
3841 AAATTTTCAGACAGTATATCAGAAAAATGTTTTTATTTGTACTGTATAGAAAATGTAATTTTGCTGTTAACTCTGTACTT
3921 TTTAAATTGAAAATGTTTTATAAATTTGCTTTTAAATTTTCTTATGAAGCCATTTGCAAATTACATACTTAATTTAATAA
4001 AATACTTTAGCCACAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' guAGUCUUUCG-------CAAAUGUCa 5'
            |:| || |:       |||||||| 
Target 5' ttTTAAAATGTAATTCAAGTTTACAGt 3'
 3576 - 3602 146.00 -9.40
2 
miRNA  3' guAGUCUUUCG-CAAAUGUca 5'
            ||| |:|||  ||||||  
Target 5' acTCACAGAGCATTTTACAtt 3'
 2567 - 2587 142.00 -6.90
3 
miRNA  3' guaGUCUUUCGCAAAUGUCa 5'
             ||||||| |||| ||| 
Target 5' agaCAGAAAG-GTTTTCAGa 3'
 668 - 686 140.00 -14.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31553040 24 COSMIC
COSN30532549 40 COSMIC
COSN15314048 71 COSMIC
COSN22416516 83 COSMIC
COSN31525191 129 COSMIC
COSN30169111 161 COSMIC
COSN9040227 417 COSMIC
COSN2028159 673 COSMIC
COSN6830443 673 COSMIC
COSN28959851 1231 COSMIC
COSN32016892 1419 COSMIC
COSN21796705 1506 COSMIC
COSN9790012 1614 COSMIC
COSN5060430 1912 COSMIC
COSN27238641 2981 COSMIC
COSN28954123 2981 COSMIC
COSN20333101 3479 COSMIC
COSN15799561 3570 COSMIC
COSN9040228 3588 COSMIC
COSN17544805 3735 COSMIC
rs139756456 2632 GWAS
rs7656730 3761 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1397360589 6 dbSNP
rs1409418638 9 dbSNP
rs753072349 11 dbSNP
rs763415346 14 dbSNP
rs1442112263 15 dbSNP
rs764695385 16 dbSNP
rs199536066 17 dbSNP
rs879051693 21 dbSNP
rs373513853 25 dbSNP
rs781239737 27 dbSNP
rs1338231059 30 dbSNP
rs1196207423 35 dbSNP
rs750710828 44 dbSNP
rs756330399 45 dbSNP
rs572102749 47 dbSNP
rs920413556 56 dbSNP
rs9991922 71 dbSNP
rs1022708603 72 dbSNP
rs1055785280 74 dbSNP
rs917252162 81 dbSNP
rs541376248 82 dbSNP
rs950048256 104 dbSNP
rs149053384 107 dbSNP
rs574596169 110 dbSNP
rs903475956 114 dbSNP
rs1325923138 123 dbSNP
rs1000837640 131 dbSNP
rs1054657397 147 dbSNP
rs1372414287 151 dbSNP
rs944971366 155 dbSNP
rs1409266028 158 dbSNP
rs1348752987 164 dbSNP
rs543219272 174 dbSNP
rs976638765 184 dbSNP
rs1391905970 189 dbSNP
rs1401150162 193 dbSNP
rs899977525 198 dbSNP
rs751972749 201 dbSNP
rs1429522038 202 dbSNP
rs1309950919 213 dbSNP
rs1471300009 230 dbSNP
rs1365059781 233 dbSNP
rs376941283 233 dbSNP
rs1028712259 234 dbSNP
rs563520712 235 dbSNP
rs1251565379 236 dbSNP
rs532284569 241 dbSNP
rs55916486 242 dbSNP
rs1008601670 248 dbSNP
rs1462975256 250 dbSNP
rs1263958989 251 dbSNP
rs143096533 267 dbSNP
rs941005748 278 dbSNP
rs1281353977 284 dbSNP
rs1239941707 288 dbSNP
rs962013572 292 dbSNP
rs1339786766 299 dbSNP
rs1454705668 313 dbSNP
rs1036668988 315 dbSNP
rs897064652 322 dbSNP
rs1413980758 325 dbSNP
rs1319417335 326 dbSNP
rs1455332260 328 dbSNP
rs1171345169 331 dbSNP
rs780885965 336 dbSNP
rs545197135 341 dbSNP
rs1003483840 358 dbSNP
rs1472211988 359 dbSNP
rs1035260451 361 dbSNP
rs1182334818 364 dbSNP
rs895011186 368 dbSNP
rs1244141602 369 dbSNP
rs745535340 374 dbSNP
rs973702478 379 dbSNP
rs1012499708 380 dbSNP
rs1464364500 381 dbSNP
rs185108803 383 dbSNP
rs1027466433 386 dbSNP
rs527726411 394 dbSNP
rs1432721771 395 dbSNP
rs958494257 399 dbSNP
rs1318620593 403 dbSNP
rs1404211371 404 dbSNP
rs1364831217 406 dbSNP
rs1162159443 422 dbSNP
rs547389338 423 dbSNP
rs766658577 423 dbSNP
rs769268712 443 dbSNP
rs976396123 443 dbSNP
rs922187057 450 dbSNP
rs1218155383 452 dbSNP
rs1194203739 457 dbSNP
rs1451057672 469 dbSNP
rs950177336 497 dbSNP
rs78752104 509 dbSNP
rs779638658 529 dbSNP
rs536360881 531 dbSNP
rs1273910062 536 dbSNP
rs1212564231 552 dbSNP
rs1270373109 553 dbSNP
rs1435337573 561 dbSNP
rs985381326 563 dbSNP
rs1196518366 570 dbSNP
rs550077011 576 dbSNP
rs936284821 577 dbSNP
rs1168551502 585 dbSNP
rs1366709924 585 dbSNP
rs1408530334 585 dbSNP
rs1054673346 588 dbSNP
rs1422118962 589 dbSNP
rs570256580 605 dbSNP
rs909606300 607 dbSNP
rs941142574 622 dbSNP
rs1036636155 633 dbSNP
rs896863830 634 dbSNP
rs370631106 635 dbSNP
rs1202393790 639 dbSNP
rs1308987641 648 dbSNP
rs1244939840 650 dbSNP
rs1477710843 660 dbSNP
rs1056347704 665 dbSNP
rs1187227448 670 dbSNP
rs1421913121 683 dbSNP
rs1476997638 684 dbSNP
rs538945110 696 dbSNP
rs1223555213 697 dbSNP
rs748706503 700 dbSNP
rs895075549 716 dbSNP
rs61474507 721 dbSNP
rs1022168431 731 dbSNP
rs557141145 732 dbSNP
rs1414321386 744 dbSNP
rs865907471 749 dbSNP
rs1435084507 751 dbSNP
rs774407566 753 dbSNP
rs1051260542 759 dbSNP
rs890233943 761 dbSNP
rs1009047675 762 dbSNP
rs1031001076 767 dbSNP
rs1481571941 770 dbSNP
rs1233443389 771 dbSNP
rs1014603399 776 dbSNP
rs966038880 779 dbSNP
rs1277184779 787 dbSNP
rs997930104 788 dbSNP
rs1264570253 789 dbSNP
rs1335190649 800 dbSNP
rs897462711 803 dbSNP
rs1327798006 807 dbSNP
rs1304233608 808 dbSNP
rs572782889 819 dbSNP
rs1029222125 837 dbSNP
rs1280694758 839 dbSNP
rs1452335047 845 dbSNP
rs953770529 849 dbSNP
rs1338892993 851 dbSNP
rs1470435067 863 dbSNP
rs994718654 869 dbSNP
rs1387918039 872 dbSNP
rs1156993098 875 dbSNP
rs1287607023 884 dbSNP
rs534560999 893 dbSNP
rs1181241674 896 dbSNP
rs1442494797 898 dbSNP
rs1244759167 916 dbSNP
rs1203833873 917 dbSNP
rs984910577 918 dbSNP
rs909408431 921 dbSNP
rs554622508 922 dbSNP
rs1243861012 925 dbSNP
rs369801080 933 dbSNP
rs991322300 935 dbSNP
rs1418878170 936 dbSNP
rs1453908926 941 dbSNP
rs1361499143 942 dbSNP
rs972488364 944 dbSNP
rs918341996 953 dbSNP
rs771998522 955 dbSNP
rs1163915881 959 dbSNP
rs1422673031 961 dbSNP
rs1387081970 970 dbSNP
rs188498141 971 dbSNP
rs1448698867 972 dbSNP
rs1259193546 973 dbSNP
rs1161866064 979 dbSNP
rs1187933049 984 dbSNP
rs10002778 985 dbSNP
rs1245643149 993 dbSNP
rs1222317271 1001 dbSNP
rs1357922587 1014 dbSNP
rs1401850976 1015 dbSNP
rs977879973 1017 dbSNP
rs140319093 1020 dbSNP
rs947991288 1022 dbSNP
rs1293638584 1024 dbSNP
rs1384147482 1024 dbSNP
rs13130198 1025 dbSNP
rs990140842 1030 dbSNP
rs903722790 1041 dbSNP
rs377531975 1042 dbSNP
rs1403248005 1047 dbSNP
rs999368850 1051 dbSNP
rs1164177355 1055 dbSNP
rs138208702 1056 dbSNP
rs901941276 1060 dbSNP
rs143769722 1062 dbSNP
rs147031180 1070 dbSNP
rs1282272560 1071 dbSNP
rs796274584 1078 dbSNP
rs1224205355 1089 dbSNP
rs1271628033 1091 dbSNP
rs1288119543 1097 dbSNP
rs1351540523 1100 dbSNP
rs1029436325 1102 dbSNP
rs1230165017 1103 dbSNP
rs891257023 1104 dbSNP
rs1282940696 1105 dbSNP
rs944493047 1110 dbSNP
rs369976271 1111 dbSNP
rs897499707 1114 dbSNP
rs1185845343 1129 dbSNP
rs1390767020 1131 dbSNP
rs1393984818 1132 dbSNP
rs994497536 1152 dbSNP
rs867093955 1153 dbSNP
rs1462359569 1154 dbSNP
rs972206569 1154 dbSNP
rs547352243 1155 dbSNP
rs1012772524 1156 dbSNP
rs1429397917 1160 dbSNP
rs77286832 1160 dbSNP
rs1197903332 1161 dbSNP
rs1200115033 1161 dbSNP
rs1249105835 1161 dbSNP
rs1418999924 1161 dbSNP
rs200150921 1161 dbSNP
rs746070276 1161 dbSNP
rs201454734 1163 dbSNP
rs1157597937 1164 dbSNP
rs918314854 1165 dbSNP
rs1375666266 1167 dbSNP
rs1284010825 1172 dbSNP
rs1238511039 1174 dbSNP
rs1309106376 1174 dbSNP
rs960769213 1174 dbSNP
rs1331797434 1182 dbSNP
rs1024155677 1184 dbSNP
rs112334631 1196 dbSNP
rs1470754416 1197 dbSNP
rs947944508 1208 dbSNP
rs1442695292 1218 dbSNP
rs1362536543 1220 dbSNP
rs998956910 1222 dbSNP
rs1043631324 1250 dbSNP
rs1032205381 1260 dbSNP
rs925194714 1262 dbSNP
rs935129230 1269 dbSNP
rs762923423 1271 dbSNP
rs1264055090 1277 dbSNP
rs1204611789 1278 dbSNP
rs576153779 1309 dbSNP
rs764646070 1318 dbSNP
rs752055018 1319 dbSNP
rs921250936 1320 dbSNP
rs1347229258 1323 dbSNP
rs1239691519 1335 dbSNP
rs954287953 1340 dbSNP
rs530113430 1348 dbSNP
rs6842435 1357 dbSNP
rs1383040030 1358 dbSNP
rs1278226139 1361 dbSNP
rs1050445939 1365 dbSNP
rs1386524320 1366 dbSNP
rs60837662 1369 dbSNP
rs1420846408 1370 dbSNP
rs1006184441 1372 dbSNP
rs1180951439 1383 dbSNP
rs1385236243 1395 dbSNP
rs1016430032 1398 dbSNP
rs539179895 1400 dbSNP
rs1238225018 1412 dbSNP
rs1192773651 1416 dbSNP
rs1445292160 1421 dbSNP
rs898100079 1425 dbSNP
rs1439685859 1433 dbSNP
rs1194820067 1444 dbSNP
rs1289563920 1444 dbSNP
rs575715326 1446 dbSNP
rs757692226 1447 dbSNP
rs1269178096 1448 dbSNP
rs1428232237 1465 dbSNP
rs1170399182 1473 dbSNP
rs1327610011 1473 dbSNP
rs919042324 1479 dbSNP
rs930377921 1482 dbSNP
rs1301883336 1494 dbSNP
rs960487371 1495 dbSNP
rs1414990326 1499 dbSNP
rs1401121748 1501 dbSNP
rs1410296149 1523 dbSNP
rs1283648724 1525 dbSNP
rs992354654 1532 dbSNP
rs1048744973 1534 dbSNP
rs1375058581 1535 dbSNP
rs1333193892 1548 dbSNP
rs1023391440 1552 dbSNP
rs1490218248 1555 dbSNP
rs566344401 1559 dbSNP
rs1398005666 1560 dbSNP
rs1266638008 1566 dbSNP
rs969005403 1578 dbSNP
rs200319185 1587 dbSNP
rs935262499 1587 dbSNP
rs987971591 1594 dbSNP
rs1304069593 1598 dbSNP
rs1332864243 1601 dbSNP
rs1231189958 1603 dbSNP
rs1222343495 1613 dbSNP
rs1218196992 1614 dbSNP
rs1256251112 1617 dbSNP
rs1439701017 1618 dbSNP
rs1205294130 1620 dbSNP
rs1246689264 1621 dbSNP
rs767879006 1623 dbSNP
rs1343117416 1624 dbSNP
rs1301771669 1630 dbSNP
rs894117468 1638 dbSNP
rs1012805131 1655 dbSNP
rs1046025038 1668 dbSNP
rs1328585675 1678 dbSNP
rs1408620998 1684 dbSNP
rs1398867951 1690 dbSNP
rs923134087 1691 dbSNP
rs535363762 1695 dbSNP
rs554585455 1700 dbSNP
rs1480123922 1710 dbSNP
rs77771426 1711 dbSNP
rs370309556 1724 dbSNP
rs138170975 1729 dbSNP
rs149580031 1732 dbSNP
rs879832434 1734 dbSNP
rs1256498435 1739 dbSNP
rs1050906034 1742 dbSNP
rs1031484908 1748 dbSNP
rs957468264 1751 dbSNP
rs181344009 1754 dbSNP
rs1202650478 1762 dbSNP
rs1320711165 1772 dbSNP
rs1284636965 1774 dbSNP
rs1219361166 1777 dbSNP
rs942011311 1788 dbSNP
rs1028344417 1792 dbSNP
rs1024793270 1793 dbSNP
rs545941276 1796 dbSNP
rs898064376 1799 dbSNP
rs1332231719 1821 dbSNP
rs993750691 1828 dbSNP
rs552763131 1829 dbSNP
rs185778521 1834 dbSNP
rs1178665230 1839 dbSNP
rs987080312 1842 dbSNP
rs1196183477 1850 dbSNP
rs144298108 1864 dbSNP
rs755820826 1867 dbSNP
rs969141029 1876 dbSNP
rs1477975048 1880 dbSNP
rs1172384289 1881 dbSNP
rs779541045 1884 dbSNP
rs979077777 1890 dbSNP
rs1032033380 1897 dbSNP
rs1421117666 1903 dbSNP
rs973335396 1905 dbSNP
rs1464933597 1911 dbSNP
rs956604820 1914 dbSNP
rs1315843511 1922 dbSNP
rs920093410 1927 dbSNP
rs1222577554 1930 dbSNP
rs1379489942 1937 dbSNP
rs930409359 1940 dbSNP
rs1452444213 1941 dbSNP
rs1380832765 1948 dbSNP
rs923220278 1957 dbSNP
rs560929149 1962 dbSNP
rs1048775551 1966 dbSNP
rs1327118187 1969 dbSNP
rs1448804877 1971 dbSNP
rs530146404 1989 dbSNP
rs1344711909 1991 dbSNP
rs191726640 1995 dbSNP
rs1156753905 2002 dbSNP
rs915585290 2013 dbSNP
rs985998626 2014 dbSNP
rs563765078 2019 dbSNP
rs1442585961 2023 dbSNP
rs1244554570 2027 dbSNP
rs1182107553 2036 dbSNP
rs1317628873 2038 dbSNP
rs532516587 2040 dbSNP
rs765514742 2046 dbSNP
rs1045399980 2051 dbSNP
rs183731508 2052 dbSNP
rs1287429530 2066 dbSNP
rs934580261 2067 dbSNP
rs187069052 2069 dbSNP
rs754532952 2075 dbSNP
rs1487832709 2080 dbSNP
rs778500923 2087 dbSNP
rs1229103131 2088 dbSNP
rs1011668228 2091 dbSNP
rs748110264 2092 dbSNP
rs889867630 2097 dbSNP
rs111824794 2099 dbSNP
rs919293577 2100 dbSNP
rs1195343206 2104 dbSNP
rs1302504938 2105 dbSNP
rs566305702 2109 dbSNP
rs1422462737 2115 dbSNP
rs929331400 2116 dbSNP
rs1164956230 2119 dbSNP
rs1165269428 2123 dbSNP
rs1427550873 2126 dbSNP
rs528779896 2139 dbSNP
rs1187743095 2141 dbSNP
rs548941513 2142 dbSNP
rs867545836 2144 dbSNP
rs1008686230 2145 dbSNP
rs148758133 2156 dbSNP
rs961960243 2161 dbSNP
rs1013475005 2163 dbSNP
rs972981499 2168 dbSNP
rs1489946285 2170 dbSNP
rs1267598354 2175 dbSNP
rs1222841377 2178 dbSNP
rs1307110904 2181 dbSNP
rs537004977 2183 dbSNP
rs1044596651 2193 dbSNP
rs1341231688 2197 dbSNP
rs1282494358 2220 dbSNP
rs1403032720 2223 dbSNP
rs904923495 2224 dbSNP
rs952844314 2228 dbSNP
rs990939487 2229 dbSNP
rs1032000754 2232 dbSNP
rs192335864 2233 dbSNP
rs142152862 2241 dbSNP
rs1030639159 2250 dbSNP
rs1361205831 2259 dbSNP
rs1270153416 2260 dbSNP
rs1210774341 2261 dbSNP
rs1401949300 2265 dbSNP
rs182269763 2274 dbSNP
rs541216115 2285 dbSNP
rs376671875 2298 dbSNP
rs78152193 2311 dbSNP
rs572733773 2316 dbSNP
rs1415782743 2319 dbSNP
rs910425639 2327 dbSNP
rs1262585539 2330 dbSNP
rs1221825223 2331 dbSNP
rs1301947379 2337 dbSNP
rs28701756 2337 dbSNP
rs1315348713 2345 dbSNP
rs1320303075 2350 dbSNP
rs973426394 2350 dbSNP
rs1244609503 2354 dbSNP
rs1370940849 2368 dbSNP
rs186972228 2369 dbSNP
rs1057147234 2370 dbSNP
rs770107061 2371 dbSNP
rs892984404 2380 dbSNP
rs1173599185 2386 dbSNP
rs1467168425 2389 dbSNP
rs1200226881 2395 dbSNP
rs947239048 2395 dbSNP
rs775564551 2397 dbSNP
rs1218223574 2398 dbSNP
rs917478535 2407 dbSNP
rs1180971703 2417 dbSNP
rs1458373206 2421 dbSNP
rs191706187 2427 dbSNP
rs1201821220 2432 dbSNP
rs1347261186 2440 dbSNP
rs1044579374 2441 dbSNP
rs904724436 2449 dbSNP
rs889900155 2450 dbSNP
rs1447303327 2451 dbSNP
rs752112169 2456 dbSNP
rs1487795803 2461 dbSNP
rs1008299567 2477 dbSNP
rs1020046119 2485 dbSNP
rs1402310764 2488 dbSNP
rs897132401 2488 dbSNP
rs34356835 2491 dbSNP
rs776209450 2491 dbSNP
rs563952463 2493 dbSNP
rs1160802644 2502 dbSNP
rs1440742866 2502 dbSNP
rs1421869367 2509 dbSNP
rs1185720876 2520 dbSNP
rs543768281 2528 dbSNP
rs892232886 2539 dbSNP
rs1009618107 2540 dbSNP
rs1204700496 2541 dbSNP
rs1030026004 2549 dbSNP
rs1027226924 2557 dbSNP
rs1240550776 2563 dbSNP
rs764159894 2567 dbSNP
rs1358489817 2569 dbSNP
rs9998630 2574 dbSNP
rs1023745302 2577 dbSNP
rs1360122672 2578 dbSNP
rs1466696120 2579 dbSNP
rs963143034 2586 dbSNP
rs1380077456 2587 dbSNP
rs973231791 2588 dbSNP
rs1300624223 2593 dbSNP
rs1420642882 2599 dbSNP
rs1161616247 2600 dbSNP
rs182806911 2600 dbSNP
rs981188231 2603 dbSNP
rs1369316516 2604 dbSNP
rs1192518856 2605 dbSNP
rs9998717 2608 dbSNP
rs750839766 2610 dbSNP
rs1217261265 2611 dbSNP
rs1490105849 2612 dbSNP
rs970659294 2613 dbSNP
rs934308597 2616 dbSNP
rs559979081 2623 dbSNP
rs1356586152 2627 dbSNP
rs1269272167 2628 dbSNP
rs139756456 2632 dbSNP
rs1341861219 2634 dbSNP
rs1401152328 2640 dbSNP
rs201293201 2640 dbSNP
rs1365582429 2642 dbSNP
rs1321977548 2646 dbSNP
rs947270411 2650 dbSNP
rs1391669354 2651 dbSNP
rs1049620196 2652 dbSNP
rs1476847786 2661 dbSNP
rs911030322 2665 dbSNP
rs1194558562 2666 dbSNP
rs926195286 2670 dbSNP
rs548803255 2672 dbSNP
rs568695984 2674 dbSNP
rs1200696653 2676 dbSNP
rs1053292579 2677 dbSNP
rs144537201 2688 dbSNP
rs1199704478 2692 dbSNP
rs945185721 2696 dbSNP
rs1319309629 2697 dbSNP
rs6824580 2706 dbSNP
rs1441537032 2716 dbSNP
rs753439784 2716 dbSNP
rs10001172 2721 dbSNP
rs1438988625 2730 dbSNP
rs73808626 2731 dbSNP
rs1328357610 2772 dbSNP
rs1012424313 2786 dbSNP
rs1464257370 2787 dbSNP
rs1433871128 2788 dbSNP
rs1023774887 2789 dbSNP
rs1402800457 2795 dbSNP
rs1017453566 2798 dbSNP
rs1174270087 2804 dbSNP
rs552687943 2804 dbSNP
rs970879316 2810 dbSNP
rs1232100393 2813 dbSNP
rs1003041980 2814 dbSNP
rs1176621000 2827 dbSNP
rs899103012 2835 dbSNP
rs201776803 2837 dbSNP
rs566325249 2842 dbSNP
rs1332540934 2858 dbSNP
rs1309953978 2862 dbSNP
rs994618851 2865 dbSNP
rs188336781 2872 dbSNP
rs1035481536 2874 dbSNP
rs555290542 2875 dbSNP
rs1346410171 2888 dbSNP
rs955982269 2890 dbSNP
rs1445137897 2891 dbSNP
rs988501965 2892 dbSNP
rs992959519 2893 dbSNP
rs1332336300 2898 dbSNP
rs914229294 2907 dbSNP
rs778631226 2908 dbSNP
rs192851382 2917 dbSNP
rs985351027 2921 dbSNP
rs1178061955 2923 dbSNP
rs1302916148 2933 dbSNP
rs1414969376 2943 dbSNP
rs1407245536 2947 dbSNP
rs911049320 2953 dbSNP
rs1310145802 2954 dbSNP
rs1441342358 2955 dbSNP
rs943852718 2958 dbSNP
rs1232244630 2960 dbSNP
rs1258408527 2963 dbSNP
rs926164140 2964 dbSNP
rs936266404 2968 dbSNP
rs1210294157 2969 dbSNP
rs1356330549 2970 dbSNP
rs537781362 2970 dbSNP
rs551343508 2970 dbSNP
rs918701304 2971 dbSNP
rs557308911 2972 dbSNP
rs1196630140 2981 dbSNP
rs934162118 2981 dbSNP
rs1237514801 2982 dbSNP
rs754620983 2983 dbSNP
rs1051485707 2984 dbSNP
rs1423319018 2988 dbSNP
rs1448895922 3006 dbSNP
rs930049176 3008 dbSNP
rs1359795321 3013 dbSNP
rs1048394317 3023 dbSNP
rs890221514 3026 dbSNP
rs1360949700 3032 dbSNP
rs1215284692 3033 dbSNP
rs943012366 3035 dbSNP
rs778588966 3037 dbSNP
rs1012453360 3038 dbSNP
rs899070417 3045 dbSNP
rs1474807962 3046 dbSNP
rs1263050594 3048 dbSNP
rs1215090596 3053 dbSNP
rs1045254778 3055 dbSNP
rs1287171818 3057 dbSNP
rs1221377265 3059 dbSNP
rs374833696 3060 dbSNP
rs906769728 3061 dbSNP
rs1315161294 3062 dbSNP
rs1228926796 3065 dbSNP
rs1003755280 3067 dbSNP
rs1276165465 3068 dbSNP
rs1351017758 3069 dbSNP
rs1401754719 3073 dbSNP
rs1031570853 3074 dbSNP
rs367690369 3080 dbSNP
rs955846480 3082 dbSNP
rs1014504832 3083 dbSNP
rs1024369984 3085 dbSNP
rs1294837593 3086 dbSNP
rs1009963420 3092 dbSNP
rs1165079612 3092 dbSNP
rs970143831 3095 dbSNP
rs1420855096 3098 dbSNP
rs747621702 3101 dbSNP
rs968334883 3103 dbSNP
rs76181460 3108 dbSNP
rs911176148 3111 dbSNP
rs957602328 3117 dbSNP
rs1267390493 3120 dbSNP
rs965654398 3121 dbSNP
rs546317110 3124 dbSNP
rs989029242 3126 dbSNP
rs1216620673 3129 dbSNP
rs758453994 3133 dbSNP
rs1257309531 3149 dbSNP
rs1256235008 3157 dbSNP
rs1220590708 3159 dbSNP
rs1341029986 3161 dbSNP
rs777552679 3166 dbSNP
rs1322323788 3167 dbSNP
rs976641237 3175 dbSNP
rs918385988 3177 dbSNP
rs1384825322 3181 dbSNP
rs913478103 3198 dbSNP
rs1293693530 3204 dbSNP
rs1445562982 3209 dbSNP
rs1397754018 3211 dbSNP
rs930080259 3221 dbSNP
rs984128151 3222 dbSNP
rs1223845840 3225 dbSNP
rs1465731377 3228 dbSNP
rs909892371 3231 dbSNP
rs1374083854 3235 dbSNP
rs1175988794 3236 dbSNP
rs1244996336 3244 dbSNP
rs747714502 3248 dbSNP
rs948088167 3255 dbSNP
rs529105105 3256 dbSNP
rs1200553612 3257 dbSNP
rs955544064 3257 dbSNP
rs770630073 3260 dbSNP
rs906809674 3268 dbSNP
rs1407522756 3272 dbSNP
rs780971143 3276 dbSNP
rs1052633104 3295 dbSNP
rs892615297 3298 dbSNP
rs1009992894 3312 dbSNP
rs1347575539 3314 dbSNP
rs185306691 3318 dbSNP
rs190216054 3344 dbSNP
rs904267039 3345 dbSNP
rs371883574 3350 dbSNP
rs1332972582 3360 dbSNP
rs1006584489 3368 dbSNP
rs1018344833 3371 dbSNP
rs965336229 3372 dbSNP
rs977050477 3373 dbSNP
rs1174633183 3387 dbSNP
rs1379924516 3387 dbSNP
rs1439496782 3389 dbSNP
rs1378657523 3393 dbSNP
rs1180749340 3399 dbSNP
rs879307858 3411 dbSNP
rs1014060144 3421 dbSNP
rs1198867589 3423 dbSNP
rs1484175971 3434 dbSNP
rs867623955 3445 dbSNP
rs192651673 3446 dbSNP
rs542407533 3450 dbSNP
rs1379638504 3467 dbSNP
rs1351268981 3469 dbSNP
rs1310926838 3494 dbSNP
rs1229895423 3505 dbSNP
rs1025476663 3512 dbSNP
rs951181675 3521 dbSNP
rs1309924679 3528 dbSNP
rs1287671384 3531 dbSNP
rs1397320084 3532 dbSNP
rs983910306 3536 dbSNP
rs1033103389 3537 dbSNP
rs183606393 3548 dbSNP
rs957319552 3550 dbSNP
rs1288423285 3553 dbSNP
rs1487465699 3557 dbSNP
rs1010671443 3558 dbSNP
rs749522234 3566 dbSNP
rs948122263 3568 dbSNP
rs1185477087 3569 dbSNP
rs531213075 3572 dbSNP
rs1215809643 3576 dbSNP
rs1487302960 3584 dbSNP
rs927927830 3601 dbSNP
rs939640266 3602 dbSNP
rs1263337261 3604 dbSNP
rs1053077230 3611 dbSNP
rs1473998902 3614 dbSNP
rs892647329 3628 dbSNP
rs1180568166 3642 dbSNP
rs1246305790 3646 dbSNP
rs547235905 3653 dbSNP
rs1294382275 3656 dbSNP
rs1399917144 3662 dbSNP
rs1339180995 3670 dbSNP
rs1300401457 3671 dbSNP
rs1043915877 3673 dbSNP
rs904301322 3674 dbSNP
rs368282873 3680 dbSNP
rs1362048421 3686 dbSNP
rs1017957372 3689 dbSNP
rs920346580 3690 dbSNP
rs930286508 3699 dbSNP
rs1265313161 3711 dbSNP
rs1047863570 3720 dbSNP
rs1450854095 3728 dbSNP
rs1340804082 3729 dbSNP
rs1211280211 3738 dbSNP
rs1450014411 3746 dbSNP
rs1256864489 3754 dbSNP
rs7656730 3761 dbSNP
rs1225297376 3763 dbSNP
rs150926929 3779 dbSNP
rs1280673585 3786 dbSNP
rs1240951197 3788 dbSNP
rs1026013861 3808 dbSNP
rs1045566277 3815 dbSNP
rs905661726 3818 dbSNP
rs1395549137 3820 dbSNP
rs1170033964 3835 dbSNP
rs1995 3852 dbSNP
rs1425637352 3856 dbSNP
rs1168431788 3858 dbSNP
rs983941494 3868 dbSNP
rs539328128 3870 dbSNP
rs1016711851 3880 dbSNP
rs969460063 3885 dbSNP
rs1279636516 3890 dbSNP
rs981243414 3893 dbSNP
rs1010227148 3905 dbSNP
rs774441643 3910 dbSNP
rs1196155175 3911 dbSNP
rs927990236 3913 dbSNP
rs1243063700 3918 dbSNP
rs955649325 3918 dbSNP
rs1440908067 3919 dbSNP
rs188260991 3934 dbSNP
rs181137329 3935 dbSNP
rs1273416829 3937 dbSNP
rs1235953501 3939 dbSNP
rs1371942012 3944 dbSNP
rs1330970296 3961 dbSNP
rs914197886 3964 dbSNP
rs1437312540 3965 dbSNP
rs964139453 3966 dbSNP
rs139470812 3973 dbSNP
rs7673397 3977 dbSNP
rs1415958710 3989 dbSNP
rs983119927 4005 dbSNP
rs1454566123 4008 dbSNP
rs537042367 4009 dbSNP
rs1176398840 4016 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796037. RNA binding protein: AGO2. Condition:4-Thiouridine PAR-CLIP data was present in GSM796038. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' guagucuuucgCAAAUGUCa 5'
                     |||||||| 
Target 5' -------ucaaGUUUACAGu 3'
 		1 - 13
Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796037
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000261435.6 | 3UTR | UCAAGUUUACAGUAUUACUUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM796038
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000261435.6 | 3UTR | UCAAGUUUACAGUAUUACUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
STAD 0.505 0 0.493 0 30 Click to see details
UCEC 0.407 0.04 0.400 0.04 19 Click to see details
PRAD -0.234 0.05 -0.173 0.11 50 Click to see details
HNSC -0.231 0.07 -0.169 0.15 41 Click to see details
LIHC -0.194 0.09 -0.139 0.17 49 Click to see details
CESC -0.953 0.1 -1.000 0.5 3 Click to see details
THCA 0.152 0.13 0.103 0.22 59 Click to see details
KICH 0.22 0.15 0.213 0.15 25 Click to see details
BLCA 0.237 0.18 0.216 0.2 17 Click to see details
PAAD 0.6 0.2 0.600 0.2 4 Click to see details
ESCA 0.231 0.25 0.245 0.23 11 Click to see details
KIRC -0.071 0.28 -0.032 0.4 68 Click to see details
CHOL -0.176 0.33 -0.017 0.48 9 Click to see details
BRCA -0.039 0.36 0.127 0.12 84 Click to see details
LUAD 0.112 0.36 0.147 0.32 12 Click to see details
LUSC -0.047 0.39 -0.087 0.3 38 Click to see details
KIRP 0.05 0.39 0.125 0.25 32 Click to see details
PCPG -0.269 0.41 -0.500 0.33 3 Click to see details
PCPG -0.269 0.41 -0.500 0.33 3 Click to see details
93 hsa-miR-3607-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057680 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT058092 EIF4G2 eukaryotic translation initiation factor 4 gamma 2 2 4
MIRT063624 FBXO28 F-box protein 28 2 2
MIRT071884 BTF3L4 basic transcription factor 3 like 4 2 2
MIRT079440 FOXK2 forkhead box K2 2 4
MIRT080491 BCL10 B-cell CLL/lymphoma 10 2 2
MIRT081214 MIDN midnolin 2 10
MIRT082786 ZNF264 zinc finger protein 264 2 2
MIRT082862 ZNF543 zinc finger protein 543 2 4
MIRT099112 FOXC1 forkhead box C1 2 4
MIRT099343 QKI QKI, KH domain containing RNA binding 2 2
MIRT100913 CD2AP CD2 associated protein 2 2
MIRT104030 USP42 ubiquitin specific peptidase 42 2 6
MIRT130023 QSER1 glutamine and serine rich 1 2 2
MIRT142614 IL21R interleukin 21 receptor 2 2
MIRT143477 CHD9 chromodomain helicase DNA binding protein 9 2 2
MIRT187759 ESYT1 extended synaptotagmin 1 2 2
MIRT200250 EVI5 ecotropic viral integration site 5 2 2
MIRT212867 N4BP2 NEDD4 binding protein 2 2 2
MIRT219622 GIGYF1 GRB10 interacting GYF protein 1 2 8
MIRT220244 FAM3C family with sequence similarity 3 member C 2 6
MIRT222069 PURB purine rich element binding protein B 2 2
MIRT243478 TRIM71 tripartite motif containing 71 2 2
MIRT261690 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT320184 ITGB8 integrin subunit beta 8 2 2
MIRT441644 CCNB1IP1 cyclin B1 interacting protein 1 2 6
MIRT441965 BACE2 beta-site APP-cleaving enzyme 2 2 2
MIRT442175 TRIM59 tripartite motif containing 59 2 4
MIRT442716 TNKS tankyrase 2 2
MIRT443932 ZNF418 zinc finger protein 418 2 2
MIRT445790 ALG13 ALG13, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT448148 P2RY10 purinergic receptor P2Y10 2 2
MIRT463393 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT463761 YPEL2 yippee like 2 2 2
MIRT477233 ETF1 eukaryotic translation termination factor 1 2 2
MIRT483464 DR1 down-regulator of transcription 1 2 6
MIRT484110 ABCD2 ATP binding cassette subfamily D member 2 2 4
MIRT487297 SLC38A9 solute carrier family 38 member 9 2 2
MIRT501292 RRN3 RRN3 homolog, RNA polymerase I transcription factor 2 4
MIRT501343 RNF44 ring finger protein 44 2 4
MIRT502696 CSNK1G1 casein kinase 1 gamma 1 2 4
MIRT511075 NIPA1 non imprinted in Prader-Willi/Angelman syndrome 1 2 4
MIRT511243 KLHL36 kelch like family member 36 2 6
MIRT531418 PLBD2 phospholipase B domain containing 2 2 2
MIRT536603 IRF2 interferon regulatory factor 2 2 2
MIRT537727 ELAVL2 ELAV like RNA binding protein 2 2 2
MIRT537985 DPP8 dipeptidyl peptidase 8 2 2
MIRT539083 ARNTL aryl hydrocarbon receptor nuclear translocator like 2 4
MIRT547185 PBRM1 polybromo 1 2 2
MIRT547596 LIN28B lin-28 homolog B 2 2
MIRT548188 FOXA1 forkhead box A1 2 2
MIRT555055 PYURF PIGY upstream reading frame 2 2
MIRT557321 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT557979 FAM217B family with sequence similarity 217 member B 2 4
MIRT558439 DDIT4 DNA damage inducible transcript 4 2 3
MIRT558560 CRLF3 cytokine receptor like factor 3 2 4
MIRT562332 FGF2 fibroblast growth factor 2 2 2
MIRT565836 SCML2 Scm polycomb group protein like 2 2 2
MIRT566796 MIER3 MIER family member 3 2 2
MIRT568565 AK4 adenylate kinase 4 2 2
MIRT572483 PRR14L proline rich 14 like 2 2
MIRT572586 HGFAC HGF activator 2 2
MIRT572876 OPHN1 oligophrenin 1 2 2
MIRT573136 ABT1 activator of basal transcription 1 2 2
MIRT573244 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT573388 GGA2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 2 2
MIRT574588 N4BP1 NEDD4 binding protein 1 2 2
MIRT575081 Ddit4 DNA-damage-inducible transcript 4 2 3
MIRT609077 SMIM15 small integral membrane protein 15 2 8
MIRT619337 RNF2 ring finger protein 2 2 2
MIRT623058 NRXN1 neurexin 1 2 2
MIRT623307 MARCH4 membrane associated ring-CH-type finger 4 2 2
MIRT623899 FOXN3 forkhead box N3 2 2
MIRT625177 GRIK4 glutamate ionotropic receptor kainate type subunit 4 2 2
MIRT630448 GTPBP8 GTP binding protein 8 (putative) 2 2
MIRT630587 SLC9A8 solute carrier family 9 member A8 2 2
MIRT634451 PAK6 p21 (RAC1) activated kinase 6 2 2
MIRT634727 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT635769 PDCL3 phosducin like 3 2 2
MIRT650924 ST6GALNAC1 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 2 2
MIRT668975 CLSTN2 calsyntenin 2 2 2
MIRT669612 AEBP2 AE binding protein 2 2 2
MIRT686746 STX16 syntaxin 16 2 2
MIRT687932 HMGN1 high mobility group nucleosome binding domain 1 2 2
MIRT691875 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT698432 TM4SF1 transmembrane 4 L six family member 1 2 2
MIRT698572 TFDP2 transcription factor Dp-2 2 2
MIRT704500 CPEB4 cytoplasmic polyadenylation element binding protein 4 2 2
MIRT704907 CCDC71L coiled-coil domain containing 71 like 2 2
MIRT713810 XRCC2 X-ray repair cross complementing 2 2 2
MIRT718300 MOGAT1 monoacylglycerol O-acyltransferase 1 2 2
MIRT719022 SHROOM3 shroom family member 3 2 2
MIRT723766 MPLKIP M-phase specific PLK1 interacting protein 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3607 Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia tissue
hsa-miR-3607 Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (SKOV3)
hsa-miR-3607 Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-3607 Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-3607 Plx-4720 24180719 NSC757438 resistant High Thyroid Cancer cell line (8505c, BCPAP)
hsa-mir-3607 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-3607 Cisplatin 5460033 NSC119875 approved sensitive cell line (CP20)
hsa-mir-3607 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-3607-3p Paclitaxel 36314 NSC125973 approved resistant High Prostate Cancer cell line (DU-145, PC-3)
hsa-miR-3607-3p Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia tissue
hsa-miR-3607-3p Anthracycline 30323 NSC82151 approved resistant High Breast Cancer tissue
hsa-miR-3607-3p Cyclophosphamide 2907 NSC26271 approved resistant High Breast Cancer tissue
hsa-miR-3607-3p Fluorouracil 3385 NSC19893 approved resistant High Breast Cancer tissue
hsa-miR-3607-3p Taxol 36314 NSC125973 approved resistant High Breast Cancer tissue
hsa-miR-3607-3p Methotrexate 126941 NSC740 approved resistant High Breast Cancer tissue
hsa-miR-3607-3p Temozolomide 5394 NSC362856 approved resistant cell line (U251)
hsa-miR-3607-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-3607-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-3607-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-3607-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-3607-3p Platinum 23939 resistant tissue
hsa-miR-3607-3p Platinum 23939 resistant tissue (non-small cell lung cancer)
hsa-miR-3607-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3607-3p Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM16)
hsa-miR-3607-3p Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-3607-3p Bortezomib 387447 NSC681239 approved sensitive tissue (multiple myeloma)
hsa-miR-3607-3p Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-3607-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (Panc1-GR1)
hsa-miR-3607-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

Error report submission