miRTarBase - #MIRT229503


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pre-miRNA Information
pre-miRNA hsa-mir-7849   
Genomic Coordinates chr4: 146408583 - 146408688
Description Homo sapiens miR-7849 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-7849-3p
Sequence 64| GACAAUUGUUGAUCUUGGGCCU |85
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1386078731 3 dbSNP
rs144001291 10 dbSNP
rs1334425573 16 dbSNP
rs557644637 20 dbSNP
Putative Targets

Gene Information
Gene Symbol EIF1AX   
Synonyms EIF1A, EIF1AP1, EIF4C, eIF-1A, eIF-4C
Description eukaryotic translation initiation factor 1A, X-linked
Transcript NM_001412   
Expression
Putative miRNA Targets on EIF1AX
3'UTR of EIF1AX
(miRNA target sites are highlighted)		 
>EIF1AX|NM_001412|3'UTR
   1 ATTGAACTCAACATTTTACATTCCATCTTTTCTGAAGATTGTCCTACAATTTGGATTTTGATCATGACAAAGAAGATTAA
  81 AATTTCATTAGCATGAATGCAATTTGTTAAAGCAGACTGATTTGTTTCTAAGATATTTTTGGTTTTTTTAAAACTGATAA
 161 TAATGCTGAATTATCTTAAGTGAGATGTTAAGCCCACTTTGTTCTTTTAATGTAATGGAGCTTATGGGTAGAAGACCATG
 241 TCTACTAATTACAAAAAAAAAAAAAAACCATGCATTGCTGCTTTTCCTACCACTTCCAGTAAGAAAATGGGTGTTTTGAA
 321 GAAATCATTTGCCTTGTCCTCACGGAATCTGATTAAGCCCTGGCCTCTTGATTGTATAGAGTCATTGTGTATATTCCAGT
 401 TACCTAGATATTCCCTTGAGATTTTGATACAATTTGAGGGAGGCAGAAGTCTGCAGTTGAAGAAAAAAAATAAGTCTGTT
 481 TGTCATATTTAAGTAGCCTGTGGCTATTTTTATACTGATTTTGATATCATGTTCTTTTCATAGTCGTATTTTGCCACCGT
 561 AAACATAAAAAAAAAAAAAAAGATTTCCAAAATGCCGTTTTCAGAACCTGGGTTTTAATAGCAGTATTGAATTTGTAAGC
 641 TTAGTAGTTGCAGAAATTGAACACTAGGTGGCACTCAGTTATCTTAACAGGGGAAGTACTGATACAATTGTTGACTTTTC
 721 TTTTACTATGTGTAAGAAATACCCCAAACATGAAAAGATTGTTTTGATCATATGCATGTATGTAGAATATTTTTGCAGAG
 801 CAGAAAGATTATGTTAGAAGTGTGATTTTTATTTTCAGAAGTCATATACATGTAAGCTACAATTTTGAGTGCTTTATAAA
 881 CACTTAAGATATATATATAAATTTTAATTTCATAGCAACTTGTAAAAAATAAAATACTTGTTGAAAAGCCTTTTTCAACA
 961 TATCCCTAAGCTAAGGGAAGAGGAAGGAATAACAACTCAGTGAAAAGATGGTCTCCAGTTTCTGAATGAAAAAGCTACAG
1041 CTGAGAAATAAAATAAAATGTCATGCTGCAGAATATGTTATACCCTTATTTTGTGTTAAGGATATATTTTATTATGTGAA
1121 TGGTTTTGTTTTTGTTTTTTGTTTTTGTTTTTTGCTTGTATTGGGAATTAGCTTTACTGGTAACTTCCTTATTTAGTTTT
1201 TAGTGGTCAACTCTAATAAAATGAAACTAGGGCTGAGCTAGTTAGCCCTCACTAGCCAAACTGAAACTCTATGCAACATT
1281 AAAAGAAGAGATCCATCATGTAGCTTGTGACACTTTTATTTTATTAGTCACCGGGGAACTTTTCAGTGATGAAAATACAC
1361 AGGGTAATAAACCTTCACATGGCTTCAAAAGGAAAACAAGCAAATCTTCTCTAATCTACTCTTACTATAATTTCCTAAGT
1441 GTACACCAAACTCTGGATTTAAAAATCTGAAGTACTATAGAACATTAAGTTGAAGAATGGAAATTAAGAGTACGTATTCA
1521 TGGTTTATATTTCTTATTCTATGGAGTTCGTGAACACATCTAGGTGGAATGCATCTGAGACTAAGGGCTGGTTTTTAATC
1601 CTCATAAGAAACCAGCCTTGAAGAATTAACAATTCTCTTCATTGGTATTCTAAACCTCCTAAGATATTTAGGCTTCTGTA
1681 CATAAAAGTGTTTTTGCTAAATTTACAGTATATATAGATCCTTTCATATTATTTTACTAAGAATGTTTGAACTTTGCATA
1761 TTTGATATAGTTCCTGGTAGGAATAGCACAGCTCAAACATTAGTTTTTCTACTTACCTCCTCTAACACGTGGTTTGTCTG
1841 GAGAGTTTCTAAAAATTCAGCTATAACCCCAGTTCATGTATTTACTGGTGATTGTTCTTGCTGAGGTAGTAACAGCCCAA
1921 TCTTGGGCTGTTAAATCCTAGGAAATCTCGAATCATAGTGATTAAAATAGTTGGGGTAAAGTTGTAGCTTATATGCAATA
2001 CTACTTGGAGGAATTCTTCTACTAATTTGTATTTAATGTGGAAATTGTATAGTTTCATTGATTTAATCATAAATAATGGA
2081 AATGGTCTCCAAGAAGTTTTATTTTTCATTTTTTTGCTTATACACTCTGATTCCTATAATACAGTGCTATAAGCTATGCA
2161 CAGAAAATAAAATGTTTGAAATCCAAGAATAATGGTTCTTACTGCTAAGAGGGAGTAATAGTTATTACTAATGATTTTGA
2241 TTGGGTTGCATTTTTGTTGCAATGTTTATTCCACTTGCAGTTAGAATATGAATATGTTTTATCACTAGTGTGGCTAAATA
2321 ACCAAACATTTGTGTAAAAAAAAAAAAAAGCCAAGATTTCATTGTTTGTTGAATATTTCTTAAGCATCTGGCCCCTAAAG
2401 AGACCGCTTCTTACCAAGCCTGTAAACTATGCATGATGGAAATTCTTGTATTTTATTTAGGAATGGCTGTTGGTTTACTC
2481 ACCACATCTGTGGAATCATGGCTATAAATGTTTGCTTACAAACTCTTTGTGACTTGTAATTTAACTTAATCTCATCTAAT
2561 GTAAATATTAGATTATGATGTTCAGTAACATCTTCCATAGGTATAAACTGCTGTCATTATTGATTTCAGAGTAACTCTGA
2641 GTAATCAAATAGGTAAAAGCATGTTTTGAGTAAAATAGCTAGATTTATACTTTACTTGTATACAGACTTAACAACAACCG
2721 GTATTGACTGGATTGACAGCTAAAGTATCAGAATGAAAGCAAGGTTTTTTTGATGTTACCTGACTGTCATAAAGATGAAA
2801 ATGATTTGTATTGGTATGAAATGCTTATCTTTATTCTACTTCGTAAGGGTAAGTTTTATTTATACTCTTTGGACTCCCAT
2881 GAACTTTTGCACACTGCTTTGTGTTTTTGGTTTACCCTAAACTACCATCCTTTTTATCTTTGCTTTTTTTCTTCCTATTC
2961 AGAAAAGAGCAAAATGTGAAAAGACACAAGACTCTCAGGTATAGAATGAACTGAGCAATTTGGAGAATGTATTGGACTTT
3041 GTCCTCTCTTATTCCCCCCTCCTAGCCCTGCAAGTTGCTAGGTACTTGTGAGGCAGTGTACTGGAGAGGGGAGAGCATGG
3121 ATCCTGGGGTCAAAGGGCCTTTGCCCCCACCCTTACTTGGCCCTCTACCTGCAGGTGACCACTGGCACATTCTCCTGCTT
3201 GTCTCAGCTTCAGGTTCTTCACCTCTAAGATGGGGATGATGAAAACAGTACCTGTCATGCAGAATTGTTGGGAGGATTGA
3281 TAATTTAGATGTTTATACATGTAATGTACTTAGATCAGTGTCTGCTCTTTTCACTTGATATCCAGTACTATGTAAGATAG
3361 AAGGTGCATGTCTTCTGTATTCTGTATTTCCCATTTCTTTTGCGTGCAGTCTTTGATTCGTACAATAGAAGGAACACGTA
3441 GAATGTATATTTGTACATTCATGTCAACATAGTATTTGAAATTGCTACCAAACTCATTTAATTTGGCATAAGACTAACAG
3521 ATGAAGTCTCTCATTTGCTTGAAGATATTTTACAAAATACCAACTGTTCTATATTTCTTTAGAAAAAGATTATAGTTATT
3601 AATATTGATACCTCTGATAATATTTTATTCTTAAATCTTCAGTGATTCCTTTTACTATAGATTCATGACAGCTAATTAGT
3681 ACTAACTGATTTAGAGGTTTCCTTTCCCATCATATGGAATGATGTAAAGAAATCAGATACAAACTACTGCAATTAGAAAA
3761 TAAAATATGAACAACTTTCAACAATGTA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uccggguuCUAGUUGUUAACAg 5'
                  |||  |||||||| 
Target 5' gaagtactGAT--ACAATTGTt 3'
 693 - 712 150.00 -7.50
2 
miRNA  3' ucCGGG--UUC-UAGUUGUUAACAg 5'
            |||:  ||| ||:||||||| | 
Target 5' caGCCTTGAAGAATTAACAATTCTc 3'
 1613 - 1637 142.00 -13.90
3 
miRNA  3' ucCGGGUUCUAG--UUGUUAACAg 5'
            ||: || | |  |||| |||| 
Target 5' tgGCTAAATAACCAAACATTTGTg 3'
 2311 - 2334 130.00 -7.09
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs780504744 2 dbSNP
rs754494981 6 dbSNP
rs1393703950 12 dbSNP
rs1033230901 18 dbSNP
rs751215213 28 dbSNP
rs1330146208 32 dbSNP
rs371146150 34 dbSNP
rs779723263 43 dbSNP
rs758861788 46 dbSNP
rs112395584 47 dbSNP
rs1173855842 48 dbSNP
rs1160893352 49 dbSNP
rs1409156388 63 dbSNP
rs780268123 64 dbSNP
rs1162908971 69 dbSNP
rs999517119 75 dbSNP
rs1437224688 76 dbSNP
rs758550297 77 dbSNP
rs1333023835 86 dbSNP
rs1391611067 93 dbSNP
rs1389447179 102 dbSNP
rs1444474530 125 dbSNP
rs1311266096 135 dbSNP
rs1351107305 142 dbSNP
rs1227412926 143 dbSNP
rs1287238781 144 dbSNP
rs1323010570 145 dbSNP
rs1160970092 149 dbSNP
rs375060753 150 dbSNP
rs750721145 150 dbSNP
rs1458955651 163 dbSNP
rs1369550617 165 dbSNP
rs1158511836 180 dbSNP
rs190578728 184 dbSNP
rs1435661154 201 dbSNP
rs1416159403 213 dbSNP
rs1462038289 215 dbSNP
rs1170149717 227 dbSNP
rs1398190553 229 dbSNP
rs4487967 231 dbSNP
rs868679865 239 dbSNP
rs1451232362 242 dbSNP
rs1265474909 245 dbSNP
rs1211745798 246 dbSNP
rs1357061721 249 dbSNP
rs1292430884 250 dbSNP
rs1239325450 251 dbSNP
rs1351321472 252 dbSNP
rs1233507837 253 dbSNP
rs1311148815 253 dbSNP
rs1239436163 261 dbSNP
rs1042460988 263 dbSNP
rs1256922913 263 dbSNP
rs1274266640 264 dbSNP
rs757459265 264 dbSNP
rs1321094986 265 dbSNP
rs1388023245 267 dbSNP
rs1208378760 268 dbSNP
rs1442221049 268 dbSNP
rs1475692708 268 dbSNP
rs878950841 268 dbSNP
rs878976212 268 dbSNP
rs1478813018 275 dbSNP
rs1365643160 277 dbSNP
rs1298190373 309 dbSNP
rs1418372801 312 dbSNP
rs961533382 312 dbSNP
rs1382605650 317 dbSNP
rs1377024540 333 dbSNP
rs1415060600 343 dbSNP
rs7062730 349 dbSNP
rs1277135270 359 dbSNP
rs7063768 374 dbSNP
rs754365161 381 dbSNP
rs1477882702 386 dbSNP
rs1271292929 389 dbSNP
rs1345010439 391 dbSNP
rs1217968163 392 dbSNP
rs1281232505 399 dbSNP
rs1376134851 411 dbSNP
rs1201206815 415 dbSNP
rs1261223787 417 dbSNP
rs1489312839 429 dbSNP
rs1194074062 432 dbSNP
rs1377124005 441 dbSNP
rs1452318884 444 dbSNP
rs202141755 445 dbSNP
rs1170707655 449 dbSNP
rs1396694742 454 dbSNP
rs138669696 456 dbSNP
rs1215860163 462 dbSNP
rs1358169133 465 dbSNP
rs1487279184 471 dbSNP
rs1288020754 483 dbSNP
rs1318482425 484 dbSNP
rs1329967776 485 dbSNP
rs1231763553 488 dbSNP
rs1306204828 496 dbSNP
rs1349058887 497 dbSNP
rs1205504297 512 dbSNP
rs1284310967 515 dbSNP
rs1343954236 527 dbSNP
rs868742815 531 dbSNP
rs1234953820 545 dbSNP
rs761050909 546 dbSNP
rs1254740730 548 dbSNP
rs1276993087 559 dbSNP
rs1397536536 560 dbSNP
rs1363039539 563 dbSNP
rs1319482589 564 dbSNP
rs1414272509 566 dbSNP
rs1158761641 568 dbSNP
rs1389411749 569 dbSNP
rs1384522767 577 dbSNP
rs1328538873 581 dbSNP
rs1240059933 582 dbSNP
rs1307584940 582 dbSNP
rs1356555186 582 dbSNP
rs1372439755 582 dbSNP
rs1446694620 582 dbSNP
rs879102152 582 dbSNP
rs1265044039 584 dbSNP
rs1354339945 589 dbSNP
rs1211653438 590 dbSNP
rs1400506160 593 dbSNP
rs1468910363 596 dbSNP
rs1177897225 597 dbSNP
rs1236183844 624 dbSNP
rs1420600056 625 dbSNP
rs1182113271 629 dbSNP
rs1367476019 654 dbSNP
rs1456055849 656 dbSNP
rs1288623739 670 dbSNP
rs1166559921 678 dbSNP
rs1394538125 691 dbSNP
rs1174604813 698 dbSNP
rs1329849071 705 dbSNP
rs6527969 705 dbSNP
rs1312296044 718 dbSNP
rs1338984840 719 dbSNP
rs1235362427 720 dbSNP
rs1294025427 725 dbSNP
rs1317349074 735 dbSNP
rs753016647 743 dbSNP
rs1480870261 746 dbSNP
rs767992721 747 dbSNP
rs1423119942 750 dbSNP
rs1249502011 757 dbSNP
rs759097381 761 dbSNP
rs1481493218 765 dbSNP
rs1196222286 773 dbSNP
rs1191634078 779 dbSNP
rs774041070 786 dbSNP
rs1189599488 789 dbSNP
rs1477187334 813 dbSNP
rs770398535 813 dbSNP
rs1356728921 816 dbSNP
rs1462931930 831 dbSNP
rs1478803143 837 dbSNP
rs1302700391 839 dbSNP
rs1265259050 844 dbSNP
rs1216393508 859 dbSNP
rs1416907490 861 dbSNP
rs1313658870 862 dbSNP
rs1441697530 872 dbSNP
rs1339973148 885 dbSNP
rs1276203847 886 dbSNP
rs1297802287 886 dbSNP
rs1201870869 891 dbSNP
rs1323839462 892 dbSNP
rs1255245703 895 dbSNP
rs1484540579 897 dbSNP
rs1212617837 898 dbSNP
rs201186642 900 dbSNP
rs1216260605 922 dbSNP
rs1341773427 924 dbSNP
rs1184317975 928 dbSNP
rs1421020256 938 dbSNP
rs1271348457 942 dbSNP
rs1175947602 943 dbSNP
rs1376303838 945 dbSNP
rs1447943486 949 dbSNP
rs1174497658 950 dbSNP
rs1360067514 951 dbSNP
rs1398383979 960 dbSNP
rs1290755449 964 dbSNP
rs1362728263 973 dbSNP
rs1382734285 975 dbSNP
rs1300458366 988 dbSNP
rs1345475479 991 dbSNP
rs1339121380 995 dbSNP
rs1280764555 996 dbSNP
rs1336536580 1000 dbSNP
rs1470482822 1011 dbSNP
rs55934460 1018 dbSNP
rs1485879190 1053 dbSNP
rs1260820852 1060 dbSNP
rs1168717657 1061 dbSNP
rs3211252 1074 dbSNP
rs1251601970 1080 dbSNP
rs1455864249 1111 dbSNP
rs1467297273 1113 dbSNP
rs1240471898 1115 dbSNP
rs1187078516 1120 dbSNP
rs1472412463 1129 dbSNP
rs1161497362 1141 dbSNP
rs1235615561 1148 dbSNP
rs1185231503 1149 dbSNP
rs1457414661 1150 dbSNP
rs1461552541 1153 dbSNP
rs1292881221 1154 dbSNP
rs1368772678 1154 dbSNP
rs1303930377 1155 dbSNP
rs759327232 1155 dbSNP
rs1375846693 1160 dbSNP
rs1196351123 1163 dbSNP
rs1285863669 1167 dbSNP
rs1319474095 1171 dbSNP
rs1486650942 1172 dbSNP
rs770881023 1186 dbSNP
rs1220105938 1192 dbSNP
rs868618805 1193 dbSNP
rs1470254242 1202 dbSNP
rs1194784651 1209 dbSNP
rs1237980265 1218 dbSNP
rs1468889799 1218 dbSNP
rs1179177035 1222 dbSNP
rs1408915440 1223 dbSNP
rs1162961333 1226 dbSNP
rs1396749111 1228 dbSNP
rs1354897930 1236 dbSNP
rs762485395 1240 dbSNP
rs1326440171 1247 dbSNP
rs1399308660 1248 dbSNP
rs1286400338 1267 dbSNP
rs6527968 1269 dbSNP
rs1439664565 1271 dbSNP
rs1280937105 1288 dbSNP
rs1373674667 1288 dbSNP
rs1227357754 1291 dbSNP
rs1290963734 1293 dbSNP
rs1336235384 1307 dbSNP
rs1453850311 1316 dbSNP
rs1257906383 1319 dbSNP
rs1376607577 1326 dbSNP
rs1329637469 1330 dbSNP
rs1449237814 1332 dbSNP
rs1355236520 1333 dbSNP
rs1420141021 1335 dbSNP
rs1475552656 1346 dbSNP
rs1165565471 1349 dbSNP
rs1418631012 1352 dbSNP
rs1164199373 1374 dbSNP
rs1403638130 1379 dbSNP
rs1411543672 1416 dbSNP
rs1330719557 1423 dbSNP
rs1165330855 1425 dbSNP
rs1445078432 1437 dbSNP
rs1446870560 1439 dbSNP
rs1237340887 1453 dbSNP
rs1356824109 1464 dbSNP
rs1233304757 1467 dbSNP
rs1277007016 1468 dbSNP
rs1338090204 1469 dbSNP
rs1176443396 1494 dbSNP
rs6418735 1495 dbSNP
rs1274208977 1497 dbSNP
rs1233053075 1513 dbSNP
rs6418734 1514 dbSNP
rs6527967 1537 dbSNP
rs1259788834 1539 dbSNP
rs1449315005 1539 dbSNP
rs901624332 1541 dbSNP
rs1247339068 1542 dbSNP
rs773088129 1547 dbSNP
rs769740463 1550 dbSNP
rs1240422781 1551 dbSNP
rs182648584 1561 dbSNP
rs943171401 1562 dbSNP
rs780841709 1571 dbSNP
rs1433799722 1573 dbSNP
rs909052347 1578 dbSNP
rs768550784 1582 dbSNP
rs1376961448 1588 dbSNP
rs1415014598 1597 dbSNP
rs1317071871 1600 dbSNP
rs1324151050 1603 dbSNP
rs1433527831 1604 dbSNP
rs1271243065 1606 dbSNP
rs879179310 1608 dbSNP
rs1374368330 1618 dbSNP
rs1282892651 1630 dbSNP
rs1348948953 1632 dbSNP
rs1216120263 1635 dbSNP
rs1259775016 1640 dbSNP
rs1448774988 1642 dbSNP
rs1195248270 1657 dbSNP
rs1242576385 1659 dbSNP
rs1453713346 1663 dbSNP
rs746051561 1678 dbSNP
rs6527966 1679 dbSNP
rs1434422211 1680 dbSNP
rs1351674476 1688 dbSNP
rs1157581136 1689 dbSNP
rs1382181716 1694 dbSNP
rs1319568473 1698 dbSNP
rs1370978869 1699 dbSNP
rs1439333487 1701 dbSNP
rs1306134393 1706 dbSNP
rs1372124249 1717 dbSNP
rs1238645981 1721 dbSNP
rs779316459 1724 dbSNP
rs1259120861 1726 dbSNP
rs1352956950 1738 dbSNP
rs1304953017 1755 dbSNP
rs1205853872 1764 dbSNP
rs1289235513 1765 dbSNP
rs6527965 1766 dbSNP
rs1048946389 1768 dbSNP
rs929226011 1769 dbSNP
rs919249605 1774 dbSNP
rs6527964 1777 dbSNP
rs981871201 1801 dbSNP
rs1180651086 1807 dbSNP
rs1361648351 1811 dbSNP
rs1470949157 1826 dbSNP
rs950108917 1828 dbSNP
rs1393053826 1829 dbSNP
rs1460379903 1841 dbSNP
rs1328471228 1852 dbSNP
rs1395680910 1864 dbSNP
rs1391126662 1868 dbSNP
rs1156640194 1875 dbSNP
rs1305296553 1876 dbSNP
rs1420582325 1878 dbSNP
rs757369652 1886 dbSNP
rs1239993224 1903 dbSNP
rs1292803302 1910 dbSNP
rs1190253636 1917 dbSNP
rs1476791966 1922 dbSNP
rs1270373859 1937 dbSNP
rs1468760102 1940 dbSNP
rs1195064907 1949 dbSNP
rs1223949081 1950 dbSNP
rs1439232831 1954 dbSNP
rs1182051239 1957 dbSNP
rs1416571586 1969 dbSNP
rs1488261757 1974 dbSNP
rs1284453413 1976 dbSNP
rs1218390424 1982 dbSNP
rs1317839874 1987 dbSNP
rs1419286613 1991 dbSNP
rs1461917661 1995 dbSNP
rs190063183 1999 dbSNP
rs991581228 2018 dbSNP
rs1043014 2019 dbSNP
rs1353647779 2021 dbSNP
rs1235151616 2024 dbSNP
rs1283983216 2025 dbSNP
rs1322322189 2030 dbSNP
rs1226557779 2032 dbSNP
rs957488401 2036 dbSNP
rs1033615410 2042 dbSNP
rs1399430280 2049 dbSNP
rs1256298664 2065 dbSNP
rs1484480640 2069 dbSNP
rs1189533003 2077 dbSNP
rs977674450 2080 dbSNP
rs1428493094 2085 dbSNP
rs968063929 2086 dbSNP
rs6527963 2089 dbSNP
rs768879336 2107 dbSNP
rs753305500 2109 dbSNP
rs1462754885 2125 dbSNP
rs1173261397 2136 dbSNP
rs1359861373 2147 dbSNP
rs1373935422 2153 dbSNP
rs1416848088 2156 dbSNP
rs1313598991 2160 dbSNP
rs1361329838 2174 dbSNP
rs1381599572 2177 dbSNP
rs1293274908 2179 dbSNP
rs1309054809 2184 dbSNP
rs1228949333 2195 dbSNP
rs1296202928 2207 dbSNP
rs1455204369 2215 dbSNP
rs767753379 2221 dbSNP
rs1212551187 2248 dbSNP
rs1345555997 2251 dbSNP
rs1185289672 2256 dbSNP
rs1256101711 2256 dbSNP
rs1264400176 2260 dbSNP
rs1429615909 2276 dbSNP
rs1020600381 2294 dbSNP
rs1393621606 2297 dbSNP
rs1436866140 2298 dbSNP
rs185256829 2300 dbSNP
rs1430911344 2302 dbSNP
rs1344714291 2306 dbSNP
rs7888433 2308 dbSNP
rs1477170891 2310 dbSNP
rs1290698336 2317 dbSNP
rs1261673301 2326 dbSNP
rs1188790504 2327 dbSNP
rs1435690073 2332 dbSNP
rs1486436620 2344 dbSNP
rs1255739666 2345 dbSNP
rs79763628 2349 dbSNP
rs1213585689 2350 dbSNP
rs1236084459 2350 dbSNP
rs1301456483 2350 dbSNP
rs1315825319 2350 dbSNP
rs751175385 2350 dbSNP
rs755411494 2350 dbSNP
rs766046045 2350 dbSNP
rs1208348442 2353 dbSNP
rs1455823919 2355 dbSNP
rs1192011802 2356 dbSNP
rs1407609567 2361 dbSNP
rs1325957029 2371 dbSNP
rs762395672 2373 dbSNP
rs983204114 2379 dbSNP
rs14141 2390 dbSNP
rs180911669 2397 dbSNP
rs6527962 2405 dbSNP
rs1293428379 2406 dbSNP
rs371279383 2407 dbSNP
rs1383815848 2415 dbSNP
rs1362455973 2417 dbSNP
rs997630909 2420 dbSNP
rs901524545 2429 dbSNP
rs761639771 2433 dbSNP
rs1407851769 2445 dbSNP
rs1308572365 2467 dbSNP
rs1176633844 2471 dbSNP
rs867510602 2472 dbSNP
rs1271744997 2478 dbSNP
rs7887282 2480 dbSNP
rs1420833215 2481 dbSNP
rs1173214032 2486 dbSNP
rs1222858955 2496 dbSNP
rs1232637285 2499 dbSNP
rs1007281786 2504 dbSNP
rs7892313 2506 dbSNP
rs1429610687 2511 dbSNP
rs887581974 2521 dbSNP
rs1474884247 2523 dbSNP
rs1180514981 2529 dbSNP
rs1164146160 2531 dbSNP
rs1415656797 2538 dbSNP
rs189012884 2568 dbSNP
rs1324010368 2575 dbSNP
rs1353684963 2578 dbSNP
rs1244032858 2585 dbSNP
rs187470793 2588 dbSNP
rs1350572303 2595 dbSNP
rs1413700473 2599 dbSNP
rs956912225 2603 dbSNP
rs377323111 2621 dbSNP
rs746830381 2622 dbSNP
rs1035707204 2629 dbSNP
rs1228181437 2638 dbSNP
rs774665241 2639 dbSNP
rs897773233 2639 dbSNP
rs369352686 2641 dbSNP
rs749312810 2650 dbSNP
rs1252741638 2654 dbSNP
rs181989359 2658 dbSNP
rs1023712050 2660 dbSNP
rs950000238 2662 dbSNP
rs1445545724 2665 dbSNP
rs766645577 2668 dbSNP
rs1005558120 2671 dbSNP
rs1418563496 2689 dbSNP
rs1299408576 2692 dbSNP
rs1440425448 2694 dbSNP
rs760196286 2698 dbSNP
rs888534440 2707 dbSNP
rs1433684870 2712 dbSNP
rs1310601233 2716 dbSNP
rs1356766170 2719 dbSNP
rs1449441562 2719 dbSNP
rs915918806 2720 dbSNP
rs1025408827 2726 dbSNP
rs1216751679 2741 dbSNP
rs1275790754 2742 dbSNP
rs1347478889 2743 dbSNP
rs763247857 2745 dbSNP
rs993975960 2759 dbSNP
rs756267323 2772 dbSNP
rs1368408532 2776 dbSNP
rs991550057 2778 dbSNP
rs1241387737 2787 dbSNP
rs773115719 2800 dbSNP
rs1190320413 2816 dbSNP
rs1390538160 2817 dbSNP
rs901078390 2819 dbSNP
rs1386215905 2829 dbSNP
rs1178308669 2832 dbSNP
rs926130921 2837 dbSNP
rs146978633 2838 dbSNP
rs1392427030 2842 dbSNP
rs978016793 2843 dbSNP
rs1344014029 2846 dbSNP
rs967654285 2848 dbSNP
rs1370654075 2851 dbSNP
rs781739069 2852 dbSNP
rs1305811764 2853 dbSNP
rs1488164877 2855 dbSNP
rs1345820411 2858 dbSNP
rs1204687951 2867 dbSNP
rs1282208095 2871 dbSNP
rs373217741 2885 dbSNP
rs1041385322 2887 dbSNP
rs755251036 2890 dbSNP
rs1248449181 2894 dbSNP
rs1453505728 2901 dbSNP
rs1191379962 2904 dbSNP
rs765386007 2917 dbSNP
rs189191080 2922 dbSNP
rs1157522920 2926 dbSNP
rs141385249 2931 dbSNP
rs775476031 2936 dbSNP
rs965658571 2936 dbSNP
rs1239104444 2942 dbSNP
rs988294009 2943 dbSNP
rs1394210842 2944 dbSNP
rs1333655294 2951 dbSNP
rs1330399854 2954 dbSNP
rs1391480714 2955 dbSNP
rs935521203 2957 dbSNP
rs1325925756 2965 dbSNP
rs758045980 2973 dbSNP
rs1017236659 2976 dbSNP
rs562187770 2983 dbSNP
rs1301875908 2986 dbSNP
rs764627168 3016 dbSNP
rs147795566 3026 dbSNP
rs1168067096 3029 dbSNP
rs745656784 3032 dbSNP
rs1268626820 3045 dbSNP
rs1467969161 3051 dbSNP
rs1211663475 3052 dbSNP
rs13179 3054 dbSNP
rs770523210 3058 dbSNP
rs984104975 3062 dbSNP
rs1438145400 3066 dbSNP
rs1473248754 3081 dbSNP
rs1027483906 3098 dbSNP
rs1417845776 3101 dbSNP
rs993770877 3104 dbSNP
rs3182471 3115 dbSNP
rs764113562 3133 dbSNP
rs1046023763 3138 dbSNP
rs1025713339 3139 dbSNP
rs949968034 3144 dbSNP
rs894453907 3146 dbSNP
rs1410581973 3148 dbSNP
rs1220230390 3149 dbSNP
rs993944944 3151 dbSNP
rs1334121813 3176 dbSNP
rs1490827016 3178 dbSNP
rs1267014303 3192 dbSNP
rs1356733977 3194 dbSNP
rs901042869 3197 dbSNP
rs1019522866 3201 dbSNP
rs760487287 3201 dbSNP
rs1483824530 3206 dbSNP
rs749003764 3225 dbSNP
rs184481752 3227 dbSNP
rs775430157 3227 dbSNP
rs1280991266 3236 dbSNP
rs1474526281 3238 dbSNP
rs1190173684 3239 dbSNP
rs936054065 3241 dbSNP
rs1461751982 3245 dbSNP
rs1166507392 3248 dbSNP
rs1372717261 3257 dbSNP
rs1430612617 3258 dbSNP
rs1007187939 3270 dbSNP
rs1041882547 3291 dbSNP
rs749500872 3295 dbSNP
rs946166530 3297 dbSNP
rs1226497651 3304 dbSNP
rs1272203717 3305 dbSNP
rs889726649 3309 dbSNP
rs1406202466 3316 dbSNP
rs1042713690 3318 dbSNP
rs976941715 3326 dbSNP
rs1346700898 3333 dbSNP
rs1184126215 3340 dbSNP
rs773525601 3344 dbSNP
rs1257559321 3348 dbSNP
rs372949609 3350 dbSNP
rs1298062412 3357 dbSNP
rs1392394866 3368 dbSNP
rs1399376942 3369 dbSNP
rs1450346016 3372 dbSNP
rs964290720 3377 dbSNP
rs1373711740 3379 dbSNP
rs564464216 3386 dbSNP
rs755628654 3387 dbSNP
rs1011274225 3389 dbSNP
rs769723634 3389 dbSNP
rs891531676 3390 dbSNP
rs748284460 3403 dbSNP
rs935504251 3404 dbSNP
rs191927114 3420 dbSNP
rs1367044304 3423 dbSNP
rs962164538 3437 dbSNP
rs1302165530 3438 dbSNP
rs1201726905 3440 dbSNP
rs769159398 3441 dbSNP
rs948281147 3447 dbSNP
rs1256045836 3460 dbSNP
rs1485856393 3469 dbSNP
rs747585983 3470 dbSNP
rs1207328261 3479 dbSNP
rs916844617 3489 dbSNP
rs1024160005 3491 dbSNP
rs1193253319 3493 dbSNP
rs369690006 3505 dbSNP
rs188674877 3508 dbSNP
rs952739750 3513 dbSNP
rs184575628 3518 dbSNP
rs1363278384 3520 dbSNP
rs1453008248 3526 dbSNP
rs1318382916 3529 dbSNP
rs1445104041 3533 dbSNP
rs1286055781 3538 dbSNP
rs778655829 3545 dbSNP
rs1324972098 3548 dbSNP
rs965501289 3559 dbSNP
rs747674104 3560 dbSNP
rs1000232341 3569 dbSNP
rs904525548 3572 dbSNP
rs756670176 3575 dbSNP
rs1006735775 3588 dbSNP
rs954083810 3591 dbSNP
rs1270510171 3593 dbSNP
rs946165001 3594 dbSNP
rs753399779 3595 dbSNP
rs1278192711 3597 dbSNP
rs1489615822 3599 dbSNP
rs1021573813 3600 dbSNP
rs771736305 3602 dbSNP
rs1161446664 3607 dbSNP
rs911506403 3607 dbSNP
rs763870359 3612 dbSNP
rs1414185109 3618 dbSNP
rs1457678912 3619 dbSNP
rs1164015941 3625 dbSNP
rs984343878 3635 dbSNP
rs1027765358 3644 dbSNP
rs1438206547 3651 dbSNP
rs1319419796 3653 dbSNP
rs1011243147 3654 dbSNP
rs891500638 3657 dbSNP
rs1052778606 3667 dbSNP
rs1404192889 3676 dbSNP
rs1178787181 3688 dbSNP
rs1470379377 3692 dbSNP
rs1002997997 3695 dbSNP
rs11552658 3708 dbSNP
rs1233184866 3712 dbSNP
rs1288193442 3714 dbSNP
rs906969938 3714 dbSNP
rs1222608240 3750 dbSNP
rs920294722 3752 dbSNP
rs1482194896 3761 dbSNP
rs1046971851 3768 dbSNP
rs1184492824 3768 dbSNP
rs1252605308 3769 dbSNP
rs1472891941 3771 dbSNP
rs760685293 3774 dbSNP
rs1406817405 3779 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' uccggguucuaguUGUUAACAg 5'
                       |||||||| 
Target 5' -----------auACAAUUGUu 3'
 		1 - 11
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000379607.5 | 3UTR | AUACAAUUGUUGACUUUUCUUUUACUAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
69 hsa-miR-7849-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT062192 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT064755 CCND2 cyclin D2 2 8
MIRT076594 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT086027 UBR3 ubiquitin protein ligase E3 component n-recognin 3 (putative) 2 2
MIRT091394 EIF4A2 eukaryotic translation initiation factor 4A2 2 2
MIRT104730 KLF10 Kruppel like factor 10 2 2
MIRT105345 SLC7A2 solute carrier family 7 member 2 2 2
MIRT105672 PNMA2 paraneoplastic Ma antigen 2 2 6
MIRT173218 TMEM64 transmembrane protein 64 2 2
MIRT228305 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT229503 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 2
MIRT243387 SKIL SKI like proto-oncogene 2 2
MIRT257404 E2F3 E2F transcription factor 3 2 2
MIRT301069 SLC16A14 solute carrier family 16 member 14 2 4
MIRT307327 CTNNB1 catenin beta 1 2 2
MIRT443182 DENND4C DENN domain containing 4C 2 2
MIRT469272 RHOB ras homolog family member B 2 8
MIRT475106 IRF2BP2 interferon regulatory factor 2 binding protein 2 2 4
MIRT484134 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT491117 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 4
MIRT504856 HAUS3 HAUS augmin like complex subunit 3 2 4
MIRT505544 SNX16 sorting nexin 16 2 6
MIRT506752 LCOR ligand dependent nuclear receptor corepressor 2 8
MIRT507358 FAM129A family with sequence similarity 129 member A 2 6
MIRT507812 CDK6 cyclin dependent kinase 6 2 6
MIRT510730 SON SON DNA binding protein 2 6
MIRT521296 RRAGD Ras related GTP binding D 2 4
MIRT521371 RNF11 ring finger protein 11 2 6
MIRT525860 ARL13B ADP ribosylation factor like GTPase 13B 2 2
MIRT527352 FAM69C family with sequence similarity 69 member C 2 2
MIRT528796 RAB32 RAB32, member RAS oncogene family 2 2
MIRT530417 SULT1B1 sulfotransferase family 1B member 1 2 2
MIRT533425 TWF1 twinfilin actin binding protein 1 2 2
MIRT539512 ACSS3 acyl-CoA synthetase short chain family member 3 2 2
MIRT543660 ZNF589 zinc finger protein 589 2 4
MIRT544833 ZNF639 zinc finger protein 639 2 2
MIRT545266 TRIM36 tripartite motif containing 36 2 4
MIRT545425 SLC39A6 solute carrier family 39 member 6 2 2
MIRT546070 VEZF1 vascular endothelial zinc finger 1 2 2
MIRT546896 PTPRK protein tyrosine phosphatase, receptor type K 2 2
MIRT547932 HNRNPR heterogeneous nuclear ribonucleoprotein R 2 2
MIRT548836 CHD1 chromodomain helicase DNA binding protein 1 2 4
MIRT550937 ZNF100 zinc finger protein 100 2 2
MIRT551840 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT553749 TBC1D8 TBC1 domain family member 8 2 2
MIRT554070 SOBP sine oculis binding protein homolog 2 2
MIRT554254 SIX4 SIX homeobox 4 2 2
MIRT558254 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT559252 BBX BBX, HMG-box containing 2 4
MIRT561110 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT561412 TSN translin 2 2
MIRT562154 ID4 inhibitor of DNA binding 4, HLH protein 2 2
MIRT563324 ORC4 origin recognition complex subunit 4 2 2
MIRT563985 SLFN11 schlafen family member 11 2 2
MIRT571387 JKAMP JNK1/MAPK8-associated membrane protein 2 2
MIRT575040 Fasl Fas ligand (TNF superfamily, member 6) 1 1
MIRT610374 C9orf64 chromosome 9 open reading frame 64 2 2
MIRT611045 FASLG Fas ligand 2 3
MIRT625440 RMDN1 regulator of microtubule dynamics 1 2 2
MIRT655071 PKIA cAMP-dependent protein kinase inhibitor alpha 2 2
MIRT656139 MSH6 mutS homolog 6 2 2
MIRT667042 PDE3A phosphodiesterase 3A 2 2
MIRT691264 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT699773 SEMA4D semaphorin 4D 2 2
MIRT707809 TSPAN6 tetraspanin 6 2 2
MIRT711125 CYYR1 cysteine and tyrosine rich 1 2 2
MIRT714107 RLIM ring finger protein, LIM domain interacting 2 2
MIRT717792 TGFBR2 transforming growth factor beta receptor 2 2 2
MIRT717929 ZNF546 zinc finger protein 546 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-7849-3p Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-miR-7849-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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