miRTarBase - #MIRT234292


—
pre-miRNA Information
pre-miRNA hsa-mir-6515   
Genomic Coordinates chr19: 12940484 - 12940540
Description Homo sapiens miR-6515 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6515-3p
Sequence 38| UCUCUUCAUCUACCCCCCAG |57
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs75453089 2 dbSNP
rs373354313 3 dbSNP
rs747907310 7 dbSNP
rs769602728 8 dbSNP
rs940767179 9 dbSNP
rs772968331 10 dbSNP
rs762602753 11 dbSNP
rs764010401 12 dbSNP
rs773666399 12 dbSNP
rs761256965 13 dbSNP
rs1320543469 15 dbSNP
rs764459512 16 dbSNP
rs754231139 17 dbSNP
rs878975696 18 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PIP4K2B   
Synonyms PI5P4KB, PIP5K2B, PIP5KIIB, PIP5KIIbeta, PIP5P4KB
Description phosphatidylinositol-5-phosphate 4-kinase type 2 beta
Transcript NM_003559   
Expression
Putative miRNA Targets on PIP4K2B
3'UTR of PIP4K2B
(miRNA target sites are highlighted)		 
>PIP4K2B|NM_003559|3'UTR
   1 TTCTCTTCTACCTTCAGCCAGAGCCAGAGAGCTGGATATGGGGTCGGGGATCGGGAGTTAGGGAGAAGGGTGTATTTGGG
  81 CTAGATGGGAGGGTGGGAGCAGAGTCGGGTTTGGGAGGGCTTTAGCAATGAGACTGCAGCCTGTGACACCGAAAGAGACT
 161 TTAGCTGAAGAGGAGGGGGATGTGCTGTGTGTGCACCTGCTCACAGGATGTAACCCCACCTTCTGCTTACCCTTGATTTT
 241 TTCTCCCCATTTGACACCCAGGTTAAAAAGGGGTTCCCTTTTTGGTACCTTGTAACCTTTTAAGATACCTTGGGGCTAGA
 321 GATGACTTCGTGGGTTTATTTGGGTTTTGTTTCTGAAATTTCATTGCTCCAGGTTTGCTATTTATAATCATATTTCATCA
 401 GCCTACCCACCCTCCCCATCTTTGCTGAGCTCTCAGTTCCCTTCAATTAAAGAGATACCCGGTAGACCCAGCACAAGGGT
 481 CCTTCCAGAACCAAGTGCTATGGATGCCAGATTGGAGAGGTCAGACACCTCGCCCTGCTGCATTTGCTCTTGTCTGGATT
 561 AACTTTGTAATTTATGGAGTATTGTGCACAACTTCCTCCACCTTTCCCTTGGATTCAAGTGAAAACTGTTGCATTATTCC
 641 TCCATCCTGTCTGGAATACACCAGGTCAACACCAGAGATCTCAGATCAGAATCAGAGATCTCAGAGGGGAATAAGTTCAT
 721 CCTCATGGGATGGTGAGGGGCAGGAAAGCGGCTGGGCTCTTGGACACCTGGTTCTCAGAGAACCCTGTGATGATCACCCA
 801 AGCCCCAGGCTGTCTTAGCCCCTGGAGTTCAGAAGTCCTCTCTGTAAAGCCTGCCTCCCACTAGGTCAAGAGGAACTAGA
 881 GTACCTTTGGATTTATCAGGACCCTCATGTTTAAATGGTTATTTCCCTTTGGGAAAACTTCAGAAACTGATGTATCAAAT
 961 GAGGCCCTGTGCCCTCGATCTATTTCCTTCTTCCTTCTGACCTCCTCCCAGGCACTCTTACTTCTAGCCGAACTCTTAGC
1041 TCTGGGCAGATCTCCAAGCGCCTGGAGTGCTTTTTAGCAGAGACACCTCGTTAAGCTCCGGGATGACCTTGTAGGAGATC
1121 TGTCTCCCTGTGCCTGGAGAGTTACAGCCAGCAAGGTGCCCCCATCTTAGAGTGTGGTGTCCAAACGTGAGGTGGCTTCC
1201 TAGTTACATGAGGATGTGATCCAGGAAATCCAGTTTGGAGGCTTGATGTGGGTTTTGACCTGGCCTCAGCCTTGGGGCTG
1281 TTTTTCCTTGTTGCCCCGCTCTAGACTTTTAGCAGATCTGCAGCCCACAGGCTTTTTTGGAAGGAGTGGCTTCCTGCAGG
1361 TGTTCCACCTGCCTTCGGAGCCTGCCACCCAGGCCCTCAGAACTGAGCCACAGGCTGCTCTGGCCAGGAGAGAAACAGCT
1441 CTGTTGTTCTGCATTGGGGGAGGTACATTCCTGCATCTTCTCACCCCCTCAACCAGGAACTGGGGATTTGGGATGAGATA
1521 TGGTCAGACTTGTAGATAACCCCAAAGATGTGAAGATCGCTTGTGAAACCATTTTGAATGAATAGATTGGTTTCCTGTGG
1601 CTCCCTCCAAACCTGGCCAAGCCCAGCTTCCGAAGCAGGAACCAGCACTGTCTCTGTGCCTGACTCACAGCATATAGGTC
1681 AGGAAAGAATGGAGACGGCATTCTTGGACTTCACTGGGGCTGCTGGATTGGATGGGAAACCTTCTGGAAGAGGCAGATGG
1761 GGGTCAAACCACTGCCTTGGCCCCAGGAAGGGGCCATAGGTAGGTCTGAACAACTGCCGCAAGACCACTACATGACTTAG
1841 GGAACTTGAAACCAACTGGCTCATGGAGAAAACAAATTTGACTTGGGAAAGGGATTATGTAGGAATAATGTTTGGACTTG
1921 ATTTCCCCACGTCATAATGAAGAATGGAAGTTTGGATCTGCTCCTCGTCAGGCGCAGCATCTCTGAAGCTTGGAAAGCTG
2001 TCTTCCAGCAGCCTCCGTGGCCTCGGGTTCCTACCGGCTTCTCTGCATTTGGTCTGCTGATCATGTTGCCATAATGTGTA
2081 TGGAAAGTGTAACACATTCTTACTGGTTAAAGACGACTACCAGGTATCTAACTTGTTTAACATTGAGTTTGTGTGTGTGT
2161 GTGTATGTTTGTGTGTTTTGTATATTGTTTACATTTTGAGAGGTAGCATTCTGTTTCAAATGCTTTTTGTTTTTCTGACA
2241 GTATTGTTGACTGGGTCATAACATTTTGAGCTGTGGTTTGGTGGATTTTCAATTTTTTTTTTTAAAGGTCATTCGCTGTG
2321 CTATCTTCAAAACCTTGAGTTTGGCCCCCAATTTTTGGCATTCAAATGTTTAAAAGCTATTTATCTTGGTTTATACAAGT
2401 TTCCTTTCTCTTCTTTTTGTCATGGTATTCTATTTGGTCTGCAGTTTGAATGTAGAGAAAGTGGACTGATCCCCCAAGCG
2481 TTGTCTGCCCCCACTCTTTCCTCCTTGGGTCCCGCCATTCTTTTACTGGGCAGTCGAGGGCATTGGAGGGGAAGTGACTG
2561 CCCTCAGCCTCACTCCCTGGGGCCATGAAGAAAAGCTAAACAGTCTCATGGCATCTCAGAATAATGTTGGGTCTCCCAAG
2641 AAGAAAGGTGTAAGAATAACGACATGGCTGATTAGGCGAGGCCAGGATAGGGCTAAGGCCAGGATTCCTGGCTGGCATCC
2721 AGTCACCCCTTCTCCCATCCTTCCCCCTCTTCTTCCACAAGTCCGCAGCCGAGACACTGTAGTCTCCCAGCCACAGTGAT
2801 GAGTGCCCTGGAGACTCCACTGACCTCTAGATGAAGGCCCCTGGCCCTGGTTCCTGTTAATTAACCTCTGGGTCTTTGAG
2881 TCCCCCAGCACAAACTTCTTTCCTGTACCCTGCGGCTTGGGGTCACAGGGCATGCCGGGAAGCCACAGCTGAGGGGCGCA
2961 GACTGAAGCAGTGCTCCACCTCTCCTTCTTTAGCTCAGGGGTTGCTGGTCTGTGGCAGGCGCCACGAGTGGCCCCTGTGG
3041 CTGTTCTCAGTGGCAGTCTCTTAAGTTCCCACCACAGGCAGCTCTTTATCCCCTCTCCCTACTTGACTCTTTCTCTTGCC
3121 TGTGCTTTTGGCCTCAAACAGGCCTGCTGGTAGCGCTCAGGGCGTGAGGCTACACTCCTGCCCTGCCTTTCCTGTCTTCA
3201 TGGTCTGCCAGGGCATACCTTGGGGAGGTGGACCAAAGACCCAGGACTTTTTGCAGTAGCCAGTCCTACCCCCCAGTTGT
3281 CTTTTTACCAATTCAGGGTGGGAGAGAAAACTGCAGCACCCCAGCATGTGAGTTACTCAGGTGTTGGGGGCTAGAAGGGA
3361 CAGTGCGTTTAAACAACACTCAGAGCTCTGGCCTTAAACCTGTGGCCCCCCAAGTCTAGGAGCCTCATCTCTTCCTGGCA
3441 GTCATGCGGGCAGGAGGTCCTGAAAGGGAAAACCCATTCAGACAACTGTTCCCCAATCTACCAGCCATCTGCAGGGGTCA
3521 GTGACCGTGGCCCTCTCCCTCCTCTAGAATGTGCCACTTATGAAGAGTGCCCCATGGGGAAAAGGAGACTCAGCTGTCCC
3601 TTGGCAGCTTGTGCCAGTATCCCAGGGCAGAAGTTTCCACAGGAGCCTCTTGCCCTTGCGCAGAGCCACTGTGAGAGGCG
3681 GTGGGAGCCAACACCCTTGGGGGAGGGGGCAGTACTGCTCGGCACATCCCAGCATCAGGTCAGATCATTGAAATTAAAAA
3761 ATGTGAATTAAGTTCATATCCACCTTTTGGGGAAGCAGGACAAACCACCACCCCACCAAGTGTGTGACTTCTCCATATCC
3841 CACTGCAGTTTCCATTTTTTAAATGGGAATTTTCAATCCCCTGTGCTTGTCTAACGTCTGCTTTAAAAAGTTTGAGACCC
3921 TGTTACTGTTTGAAAATGCATGCATGTTACGATGAATCTCCAACCTGAGGAAAAAAATAAAACTCAAAAAGCTTTGTGTA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gaccccccAUCUACUUCUCu 5'
                  ||| ||||||| 
Target 5' agagacttTAGCTGAAGAGg 3'
 154 - 173 152.00 -10.90
2 
miRNA  3' gaccccccaucUACUUCUCu 5'
                     |||||||| 
Target 5' atgtgccacttATGAAGAGt 3'
 3549 - 3568 145.00 -9.20
3 
miRNA  3' gaCCCCCCAUCU-ACUUCUCu 5'
            ||  |  ||| ||:|||| 
Target 5' atGGATGCCAGATTGGAGAGg 3'
 500 - 520 134.00 -14.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs2075060 194 GWAS
rs3744070 1605 GWAS
rs1043515 3748 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1303538392 2 dbSNP
rs371763496 3 dbSNP
rs1352929510 5 dbSNP
rs367882422 18 dbSNP
rs1012371701 19 dbSNP
rs762545902 21 dbSNP
rs1391861186 27 dbSNP
rs774791687 33 dbSNP
rs1443991336 37 dbSNP
rs764813322 38 dbSNP
rs759074785 40 dbSNP
rs374349355 42 dbSNP
rs770613453 45 dbSNP
rs746866230 46 dbSNP
rs773131264 47 dbSNP
rs771929610 48 dbSNP
rs1244382128 50 dbSNP
rs1257072120 52 dbSNP
rs569963025 53 dbSNP
rs1056340115 65 dbSNP
rs954264181 70 dbSNP
rs1003100282 91 dbSNP
rs907490955 100 dbSNP
rs765294059 106 dbSNP
rs1216351779 109 dbSNP
rs918875628 110 dbSNP
rs1036562578 125 dbSNP
rs940731806 130 dbSNP
rs909200243 136 dbSNP
rs1334842044 139 dbSNP
rs192124924 147 dbSNP
rs1294521687 150 dbSNP
rs200057028 151 dbSNP
rs1032123268 153 dbSNP
rs1000272441 155 dbSNP
rs372620267 160 dbSNP
rs932024215 163 dbSNP
rs111651572 170 dbSNP
rs904624250 170 dbSNP
rs1022776759 172 dbSNP
rs1486631672 177 dbSNP
rs533372333 189 dbSNP
rs1012765292 190 dbSNP
rs2075060 194 dbSNP
rs1474217516 197 dbSNP
rs541122569 200 dbSNP
rs1387541822 202 dbSNP
rs929250452 204 dbSNP
rs1289988048 208 dbSNP
rs965850259 214 dbSNP
rs1343701807 217 dbSNP
rs527819793 225 dbSNP
rs897478677 232 dbSNP
rs1351548618 240 dbSNP
rs1037798727 243 dbSNP
rs1413483687 243 dbSNP
rs941763818 243 dbSNP
rs910314008 246 dbSNP
rs1223630144 247 dbSNP
rs1282561518 256 dbSNP
rs138243731 258 dbSNP
rs560978342 279 dbSNP
rs35146060 284 dbSNP
rs1256211180 291 dbSNP
rs1484365912 292 dbSNP
rs1190015223 301 dbSNP
rs1258074924 316 dbSNP
rs1469542424 317 dbSNP
rs1156632854 330 dbSNP
rs773900911 334 dbSNP
rs922811374 340 dbSNP
rs977022629 343 dbSNP
rs1160025134 366 dbSNP
rs1374963263 368 dbSNP
rs1432891536 370 dbSNP
rs1314807459 372 dbSNP
rs1022346201 373 dbSNP
rs770162289 378 dbSNP
rs959361043 379 dbSNP
rs372054684 384 dbSNP
rs542043315 391 dbSNP
rs530406469 396 dbSNP
rs1375908007 411 dbSNP
rs1031653441 416 dbSNP
rs576630227 430 dbSNP
rs1345141625 434 dbSNP
rs1212455979 435 dbSNP
rs1280375558 442 dbSNP
rs200416038 446 dbSNP
rs187338605 447 dbSNP
rs1187858994 455 dbSNP
rs775197878 460 dbSNP
rs228287 461 dbSNP
rs113110169 476 dbSNP
rs745321010 481 dbSNP
rs1175681220 486 dbSNP
rs1213828450 488 dbSNP
rs1040469036 500 dbSNP
rs1356674546 512 dbSNP
rs1443317577 515 dbSNP
rs897756824 528 dbSNP
rs79059962 531 dbSNP
rs923731333 532 dbSNP
rs941701058 535 dbSNP
rs1338104262 541 dbSNP
rs888827152 547 dbSNP
rs1274975081 549 dbSNP
rs1296651274 552 dbSNP
rs1434816850 555 dbSNP
rs2241014 556 dbSNP
rs933106484 562 dbSNP
rs946597542 563 dbSNP
rs914931784 565 dbSNP
rs990917779 574 dbSNP
rs1378281682 580 dbSNP
rs1161693410 581 dbSNP
rs959058147 582 dbSNP
rs1463660809 584 dbSNP
rs1373856619 590 dbSNP
rs1167796514 599 dbSNP
rs1466568191 600 dbSNP
rs1447413606 606 dbSNP
rs1392718466 608 dbSNP
rs1034768791 631 dbSNP
rs1254862714 632 dbSNP
rs1326121843 636 dbSNP
rs1194145439 642 dbSNP
rs981825872 643 dbSNP
rs1224678234 644 dbSNP
rs1264580701 649 dbSNP
rs771307616 655 dbSNP
rs1271398650 668 dbSNP
rs555581390 672 dbSNP
rs1015010653 680 dbSNP
rs1339736239 682 dbSNP
rs1005146136 688 dbSNP
rs1250399400 703 dbSNP
rs1271050690 711 dbSNP
rs1469594013 713 dbSNP
rs1215822018 715 dbSNP
rs1268256810 724 dbSNP
rs1228190163 725 dbSNP
rs1340441179 733 dbSNP
rs888001888 740 dbSNP
rs74888256 745 dbSNP
rs1243912637 746 dbSNP
rs1478466673 750 dbSNP
rs1306309163 768 dbSNP
rs1442206817 770 dbSNP
rs1416188728 771 dbSNP
rs1330604018 783 dbSNP
rs1463301555 791 dbSNP
rs1027886983 799 dbSNP
rs535669951 807 dbSNP
rs1321746839 821 dbSNP
rs1164181827 826 dbSNP
rs996608404 835 dbSNP
rs900496002 837 dbSNP
rs1062689 849 dbSNP
rs924865475 852 dbSNP
rs1427619660 864 dbSNP
rs1340536829 891 dbSNP
rs1414096899 903 dbSNP
rs1040485423 906 dbSNP
rs978746276 930 dbSNP
rs1233726193 931 dbSNP
rs1174196304 933 dbSNP
rs1259893653 939 dbSNP
rs944739642 963 dbSNP
rs968703276 970 dbSNP
rs1477616336 973 dbSNP
rs915946539 976 dbSNP
rs372280306 977 dbSNP
rs1256086003 992 dbSNP
rs1042223061 1001 dbSNP
rs1476457854 1005 dbSNP
rs1375853659 1006 dbSNP
rs1183426686 1007 dbSNP
rs190080804 1008 dbSNP
rs368728935 1013 dbSNP
rs915173837 1015 dbSNP
rs1159875017 1018 dbSNP
rs990746844 1021 dbSNP
rs960132613 1024 dbSNP
rs199826246 1025 dbSNP
rs937715900 1029 dbSNP
rs1220173173 1030 dbSNP
rs1396531550 1032 dbSNP
rs1344997565 1035 dbSNP
rs1306093722 1037 dbSNP
rs927591982 1039 dbSNP
rs961956544 1040 dbSNP
rs981832183 1042 dbSNP
rs1016599139 1044 dbSNP
rs1354658371 1052 dbSNP
rs1210310434 1058 dbSNP
rs961081443 1059 dbSNP
rs749201707 1060 dbSNP
rs1201472195 1067 dbSNP
rs1250267983 1068 dbSNP
rs550050307 1086 dbSNP
rs1241330630 1087 dbSNP
rs533122951 1089 dbSNP
rs1336388153 1090 dbSNP
rs777613813 1098 dbSNP
rs755935411 1099 dbSNP
rs570813874 1100 dbSNP
rs1028356766 1102 dbSNP
rs996439520 1103 dbSNP
rs1466500021 1109 dbSNP
rs1297466653 1112 dbSNP
rs1377047760 1118 dbSNP
rs1313328181 1125 dbSNP
rs1413683796 1134 dbSNP
rs1062690 1152 dbSNP
rs997203881 1154 dbSNP
rs964716364 1158 dbSNP
rs1360523646 1161 dbSNP
rs573398148 1162 dbSNP
rs1160192718 1164 dbSNP
rs1233831439 1165 dbSNP
rs1009005379 1166 dbSNP
rs1313959608 1168 dbSNP
rs1234646275 1170 dbSNP
rs755281911 1172 dbSNP
rs1479929155 1173 dbSNP
rs753300593 1177 dbSNP
rs547419739 1184 dbSNP
rs1239167952 1189 dbSNP
rs1467798399 1192 dbSNP
rs527756613 1199 dbSNP
rs1179575267 1204 dbSNP
rs561866858 1206 dbSNP
rs934826802 1207 dbSNP
rs751637136 1208 dbSNP
rs1433216050 1221 dbSNP
rs1042463792 1222 dbSNP
rs766539648 1223 dbSNP
rs1257767151 1225 dbSNP
rs893641145 1229 dbSNP
rs1211324737 1230 dbSNP
rs1055456221 1242 dbSNP
rs947645024 1246 dbSNP
rs541987839 1258 dbSNP
rs937906896 1272 dbSNP
rs1329952596 1273 dbSNP
rs763162790 1276 dbSNP
rs750934114 1278 dbSNP
rs531943970 1281 dbSNP
rs1294902766 1283 dbSNP
rs562165915 1289 dbSNP
rs1220989593 1293 dbSNP
rs971884858 1297 dbSNP
rs1334533989 1298 dbSNP
rs939669661 1303 dbSNP
rs962185541 1314 dbSNP
rs1338441044 1318 dbSNP
rs908328435 1324 dbSNP
rs767975672 1331 dbSNP
rs1016133975 1341 dbSNP
rs199970339 1353 dbSNP
rs546475706 1357 dbSNP
rs1430255983 1358 dbSNP
rs145934188 1359 dbSNP
rs1401159910 1360 dbSNP
rs952351869 1362 dbSNP
rs920740124 1366 dbSNP
rs1459635132 1367 dbSNP
rs1156392760 1368 dbSNP
rs975413851 1369 dbSNP
rs1351874977 1373 dbSNP
rs35674293 1374 dbSNP
rs953319922 1374 dbSNP
rs765724493 1376 dbSNP
rs1402399725 1377 dbSNP
rs997151600 1379 dbSNP
rs901553084 1385 dbSNP
rs1292466387 1393 dbSNP
rs1052610985 1394 dbSNP
rs999316216 1400 dbSNP
rs1258440994 1406 dbSNP
rs1488963543 1408 dbSNP
rs1194334250 1409 dbSNP
rs1256777327 1410 dbSNP
rs1474165411 1428 dbSNP
rs557771302 1440 dbSNP
rs1189880848 1446 dbSNP
rs775134895 1449 dbSNP
rs903336150 1449 dbSNP
rs964936816 1451 dbSNP
rs762182463 1454 dbSNP
rs1343540281 1456 dbSNP
rs1236033597 1461 dbSNP
rs1421537395 1463 dbSNP
rs541057372 1465 dbSNP
rs1355458983 1466 dbSNP
rs1008933322 1467 dbSNP
rs1413460057 1482 dbSNP
rs1286336244 1486 dbSNP
rs894741369 1492 dbSNP
rs966694152 1493 dbSNP
rs1222886809 1499 dbSNP
rs1304356614 1501 dbSNP
rs1355381378 1503 dbSNP
rs1055772571 1520 dbSNP
rs1021499158 1529 dbSNP
rs1010954611 1532 dbSNP
rs928693621 1534 dbSNP
rs972551784 1535 dbSNP
rs1237844079 1540 dbSNP
rs776868274 1542 dbSNP
rs1054935000 1547 dbSNP
rs1206954546 1554 dbSNP
rs1002094119 1558 dbSNP
rs906482517 1559 dbSNP
rs771719723 1563 dbSNP
rs1290896078 1564 dbSNP
rs1413375190 1580 dbSNP
rs1227907696 1585 dbSNP
rs939722488 1587 dbSNP
rs1336680204 1589 dbSNP
rs1360136306 1590 dbSNP
rs1354009203 1595 dbSNP
rs908199966 1600 dbSNP
rs1384999742 1603 dbSNP
rs3744070 1605 dbSNP
rs1378735335 1612 dbSNP
rs1240398804 1613 dbSNP
rs1302075297 1618 dbSNP
rs1345030686 1626 dbSNP
rs1028869716 1628 dbSNP
rs533685652 1631 dbSNP
rs1318427324 1632 dbSNP
rs931049303 1643 dbSNP
rs1459268851 1647 dbSNP
rs1394592198 1648 dbSNP
rs1477056094 1650 dbSNP
rs1174370959 1654 dbSNP
rs920779084 1656 dbSNP
rs1409888958 1659 dbSNP
rs1329801154 1663 dbSNP
rs1030693722 1670 dbSNP
rs1447062553 1672 dbSNP
rs568129527 1674 dbSNP
rs770398580 1675 dbSNP
rs1163656684 1678 dbSNP
rs999662723 1679 dbSNP
rs1274924203 1687 dbSNP
rs555510546 1694 dbSNP
rs1338734601 1696 dbSNP
rs1403177962 1697 dbSNP
rs1421194668 1698 dbSNP
rs1318291799 1705 dbSNP
rs1199536764 1706 dbSNP
rs903618576 1715 dbSNP
rs1450054498 1718 dbSNP
rs1201172910 1719 dbSNP
rs1247348948 1720 dbSNP
rs535247930 1721 dbSNP
rs1021771506 1725 dbSNP
rs1169076172 1731 dbSNP
rs1426273113 1737 dbSNP
rs1466423412 1746 dbSNP
rs1170060998 1762 dbSNP
rs1388181829 1777 dbSNP
rs1450452121 1785 dbSNP
rs1406728041 1786 dbSNP
rs1323662619 1789 dbSNP
rs1325284381 1798 dbSNP
rs1428592272 1811 dbSNP
rs974963902 1818 dbSNP
rs1341032820 1820 dbSNP
rs1232500077 1826 dbSNP
rs1271036384 1829 dbSNP
rs576182241 1832 dbSNP
rs1211798452 1834 dbSNP
rs1187180113 1853 dbSNP
rs186145851 1855 dbSNP
rs1192153780 1856 dbSNP
rs1266033457 1859 dbSNP
rs1247304012 1864 dbSNP
rs1187752892 1870 dbSNP
rs1804816 1878 dbSNP
rs894693042 1883 dbSNP
rs1056058004 1885 dbSNP
rs1221116887 1900 dbSNP
rs1320204050 1924 dbSNP
rs938982374 1926 dbSNP
rs1275352734 1930 dbSNP
rs912184838 1931 dbSNP
rs1036390345 1936 dbSNP
rs987721876 1937 dbSNP
rs940749381 1944 dbSNP
rs142204427 1953 dbSNP
rs962811053 1958 dbSNP
rs1295347828 1960 dbSNP
rs570439244 1963 dbSNP
rs748865393 1966 dbSNP
rs1214592872 1967 dbSNP
rs138186820 1967 dbSNP
rs958121924 1973 dbSNP
rs533945802 1974 dbSNP
rs966010944 1981 dbSNP
rs1002020420 1992 dbSNP
rs1308225711 1997 dbSNP
rs1430833372 1998 dbSNP
rs906366693 2017 dbSNP
rs865875469 2024 dbSNP
rs1022058701 2034 dbSNP
rs1167278512 2035 dbSNP
rs1434027530 2036 dbSNP
rs1012044411 2047 dbSNP
rs1455912772 2055 dbSNP
rs1396437627 2060 dbSNP
rs1004046723 2063 dbSNP
rs1426467708 2076 dbSNP
rs1238172889 2079 dbSNP
rs769622535 2087 dbSNP
rs1311563311 2089 dbSNP
rs1190735703 2092 dbSNP
rs1234233697 2093 dbSNP
rs75172605 2095 dbSNP
rs1048037052 2099 dbSNP
rs1234847520 2103 dbSNP
rs548281405 2106 dbSNP
rs531761878 2114 dbSNP
rs754865869 2115 dbSNP
rs1380408366 2118 dbSNP
rs1453213221 2129 dbSNP
rs563089919 2131 dbSNP
rs1272135914 2134 dbSNP
rs1036743168 2141 dbSNP
rs1039466460 2142 dbSNP
rs554628427 2145 dbSNP
rs943558596 2147 dbSNP
rs1300473078 2150 dbSNP
rs1333559009 2153 dbSNP
rs1377901161 2154 dbSNP
rs1386326762 2156 dbSNP
rs1299281337 2163 dbSNP
rs370982494 2165 dbSNP
rs751673743 2165 dbSNP
rs887818079 2165 dbSNP
rs912027772 2165 dbSNP
rs932096586 2165 dbSNP
rs1474008876 2169 dbSNP
rs751796607 2169 dbSNP
rs1189016717 2177 dbSNP
rs1374821550 2177 dbSNP
rs945617745 2178 dbSNP
rs1268823430 2182 dbSNP
rs1433707088 2190 dbSNP
rs1192331911 2192 dbSNP
rs1288611088 2198 dbSNP
rs913908367 2199 dbSNP
rs1171089327 2207 dbSNP
rs1401387592 2214 dbSNP
rs1457587299 2221 dbSNP
rs944590170 2226 dbSNP
rs1369729505 2229 dbSNP
rs923886215 2237 dbSNP
rs1278066806 2238 dbSNP
rs1339057282 2244 dbSNP
rs1220888380 2245 dbSNP
rs989518577 2246 dbSNP
rs978119811 2273 dbSNP
rs1370340986 2292 dbSNP
rs1320805548 2295 dbSNP
rs1218850100 2297 dbSNP
rs1488493903 2304 dbSNP
rs36033169 2304 dbSNP
rs569186375 2304 dbSNP
rs796585121 2304 dbSNP
rs1033801700 2314 dbSNP
rs532818833 2315 dbSNP
rs980819245 2322 dbSNP
rs959135029 2328 dbSNP
rs970537397 2334 dbSNP
rs780487600 2339 dbSNP
rs1004104098 2341 dbSNP
rs1431535767 2348 dbSNP
rs1034494640 2350 dbSNP
rs1297620253 2350 dbSNP
rs182454209 2351 dbSNP
rs1472427480 2365 dbSNP
rs1279249107 2375 dbSNP
rs1378813421 2378 dbSNP
rs1249868367 2380 dbSNP
rs887055080 2392 dbSNP
rs972022483 2394 dbSNP
rs1212811914 2395 dbSNP
rs1321917129 2396 dbSNP
rs1483435019 2403 dbSNP
rs1215347507 2413 dbSNP
rs1283249723 2423 dbSNP
rs1489240551 2435 dbSNP
rs1255368705 2436 dbSNP
rs1217168037 2453 dbSNP
rs1236709806 2464 dbSNP
rs1482122951 2475 dbSNP
rs1183355718 2479 dbSNP
rs552230728 2480 dbSNP
rs1424609370 2483 dbSNP
rs887765673 2493 dbSNP
rs909988970 2493 dbSNP
rs1049073839 2496 dbSNP
rs996192243 2501 dbSNP
rs1446337797 2504 dbSNP
rs1304958537 2505 dbSNP
rs995218813 2513 dbSNP
rs540994074 2514 dbSNP
rs1306465028 2515 dbSNP
rs944556882 2520 dbSNP
rs1039476826 2535 dbSNP
rs572071830 2536 dbSNP
rs561711233 2544 dbSNP
rs34756948 2552 dbSNP
rs774461376 2558 dbSNP
rs923812418 2558 dbSNP
rs761543094 2565 dbSNP
rs1042301541 2568 dbSNP
rs1051906940 2576 dbSNP
rs1178189664 2592 dbSNP
rs946646183 2601 dbSNP
rs945516081 2602 dbSNP
rs147000722 2607 dbSNP
rs1054437445 2608 dbSNP
rs959083048 2621 dbSNP
rs927705888 2625 dbSNP
rs1178710104 2627 dbSNP
rs1380289018 2630 dbSNP
rs1360046943 2643 dbSNP
rs879198401 2643 dbSNP
rs576090291 2648 dbSNP
rs981979225 2656 dbSNP
rs75232815 2660 dbSNP
rs1015536688 2661 dbSNP
rs1446932753 2666 dbSNP
rs1273725863 2669 dbSNP
rs926585181 2673 dbSNP
rs1220818450 2677 dbSNP
rs980828857 2678 dbSNP
rs1317030858 2690 dbSNP
rs1196504274 2699 dbSNP
rs1256444798 2706 dbSNP
rs1459257173 2710 dbSNP
rs1182698106 2723 dbSNP
rs1391468680 2726 dbSNP
rs1005115235 2730 dbSNP
rs970762848 2730 dbSNP
rs539276302 2731 dbSNP
rs917983237 2736 dbSNP
rs1477330842 2740 dbSNP
rs367661515 2741 dbSNP
rs1024375947 2742 dbSNP
rs1430460717 2747 dbSNP
rs1465473859 2748 dbSNP
rs1027581158 2749 dbSNP
rs1456751808 2764 dbSNP
rs1410080449 2765 dbSNP
rs982608777 2766 dbSNP
rs951283646 2770 dbSNP
rs576689709 2771 dbSNP
rs1019023679 2787 dbSNP
rs1009431829 2792 dbSNP
rs1026944625 2794 dbSNP
rs1279845651 2811 dbSNP
rs1320289786 2814 dbSNP
rs57960141 2820 dbSNP
rs1289288176 2821 dbSNP
rs540393323 2825 dbSNP
rs946595185 2830 dbSNP
rs1449892689 2839 dbSNP
rs1180049458 2840 dbSNP
rs1486845544 2850 dbSNP
rs1248553672 2852 dbSNP
rs1270281077 2855 dbSNP
rs533888642 2865 dbSNP
rs1192021475 2880 dbSNP
rs1426151584 2882 dbSNP
rs568114309 2904 dbSNP
rs548336645 2912 dbSNP
rs1387976280 2913 dbSNP
rs116619541 2914 dbSNP
rs1406642763 2914 dbSNP
rs569281348 2920 dbSNP
rs1398009869 2921 dbSNP
rs552711729 2927 dbSNP
rs937662991 2930 dbSNP
rs765711644 2936 dbSNP
rs890901688 2937 dbSNP
rs372730127 2938 dbSNP
rs1228462240 2953 dbSNP
rs1312548128 2957 dbSNP
rs927659484 2959 dbSNP
rs1041473778 2969 dbSNP
rs532769297 2975 dbSNP
rs370509227 2979 dbSNP
rs1368039303 2982 dbSNP
rs1292569808 2987 dbSNP
rs73982901 2991 dbSNP
rs1215000951 2994 dbSNP
rs1434498866 2999 dbSNP
rs1447891102 3000 dbSNP
rs1187255139 3010 dbSNP
rs1366421189 3012 dbSNP
rs892624127 3013 dbSNP
rs1386478383 3020 dbSNP
rs1165233168 3021 dbSNP
rs939789189 3023 dbSNP
rs1417823560 3024 dbSNP
rs1299911141 3025 dbSNP
rs1458543096 3028 dbSNP
rs773121342 3033 dbSNP
rs1331941791 3035 dbSNP
rs1162499643 3040 dbSNP
rs1451064116 3041 dbSNP
rs141220375 3044 dbSNP
rs1338981980 3052 dbSNP
rs1454726495 3058 dbSNP
rs936883851 3060 dbSNP
rs1390743065 3067 dbSNP
rs983594941 3075 dbSNP
rs926638986 3076 dbSNP
rs1187796789 3080 dbSNP
rs115495104 3084 dbSNP
rs1238636875 3086 dbSNP
rs1288842285 3092 dbSNP
rs59769326 3093 dbSNP
rs1200300309 3101 dbSNP
rs228286 3105 dbSNP
rs1487985073 3108 dbSNP
rs1263288505 3109 dbSNP
rs1243126691 3110 dbSNP
rs1344713303 3113 dbSNP
rs1443790623 3113 dbSNP
rs1183777549 3122 dbSNP
rs1237053424 3134 dbSNP
rs983270399 3141 dbSNP
rs964677167 3143 dbSNP
rs951250910 3147 dbSNP
rs151130606 3154 dbSNP
rs1228240770 3155 dbSNP
rs370383943 3155 dbSNP
rs1454811828 3160 dbSNP
rs1337581994 3162 dbSNP
rs1376412453 3163 dbSNP
rs576057712 3164 dbSNP
rs1309220666 3171 dbSNP
rs974032497 3182 dbSNP
rs1336882401 3188 dbSNP
rs1233076288 3192 dbSNP
rs1325690430 3200 dbSNP
rs963936399 3203 dbSNP
rs1018184153 3205 dbSNP
rs562457259 3211 dbSNP
rs1291961700 3214 dbSNP
rs1431422185 3220 dbSNP
rs1456171501 3226 dbSNP
rs955014832 3230 dbSNP
rs1180036564 3236 dbSNP
rs545941024 3241 dbSNP
rs764419481 3242 dbSNP
rs1432530710 3243 dbSNP
rs572864221 3253 dbSNP
rs1379178945 3261 dbSNP
rs1020758756 3263 dbSNP
rs1020084334 3268 dbSNP
rs893689007 3271 dbSNP
rs1010360607 3274 dbSNP
rs892641930 3276 dbSNP
rs1299972503 3279 dbSNP
rs1397251076 3291 dbSNP
rs576632433 3297 dbSNP
rs1299875419 3317 dbSNP
rs1054334777 3319 dbSNP
rs761068622 3320 dbSNP
rs1277953140 3323 dbSNP
rs1199010200 3324 dbSNP
rs1432056352 3333 dbSNP
rs1206104423 3336 dbSNP
rs1251419450 3339 dbSNP
rs1055045097 3343 dbSNP
rs905482579 3344 dbSNP
rs1045283652 3348 dbSNP
rs75779079 3349 dbSNP
rs1480720639 3350 dbSNP
rs376293121 3353 dbSNP
rs192405992 3358 dbSNP
rs770629579 3366 dbSNP
rs187126742 3367 dbSNP
rs1172738342 3369 dbSNP
rs374697027 3383 dbSNP
rs554300828 3383 dbSNP
rs930025040 3383 dbSNP
rs554927688 3387 dbSNP
rs1368075757 3389 dbSNP
rs1406030730 3396 dbSNP
rs762381222 3397 dbSNP
rs983543866 3406 dbSNP
rs866615857 3408 dbSNP
rs1234095170 3409 dbSNP
rs181660899 3410 dbSNP
rs930808286 3411 dbSNP
rs1242065677 3412 dbSNP
rs545197747 3412 dbSNP
rs1326984154 3414 dbSNP
rs374350539 3420 dbSNP
rs569302282 3421 dbSNP
rs1486751850 3423 dbSNP
rs228285 3434 dbSNP
rs544201370 3445 dbSNP
rs878879189 3447 dbSNP
rs911174589 3448 dbSNP
rs986711761 3449 dbSNP
rs1425883846 3460 dbSNP
rs966785760 3461 dbSNP
rs539182415 3462 dbSNP
rs955026221 3465 dbSNP
rs567058948 3470 dbSNP
rs547249009 3471 dbSNP
rs1381122100 3473 dbSNP
rs1404313169 3480 dbSNP
rs988591081 3489 dbSNP
rs1289813024 3492 dbSNP
rs1378068101 3493 dbSNP
rs188916689 3495 dbSNP
rs748009470 3496 dbSNP
rs1238761034 3497 dbSNP
rs1465131982 3498 dbSNP
rs1318649057 3512 dbSNP
rs116221717 3520 dbSNP
rs1032749882 3524 dbSNP
rs1002098121 3526 dbSNP
rs1183906564 3527 dbSNP
rs1181938729 3533 dbSNP
rs1245068628 3536 dbSNP
rs1445368734 3537 dbSNP
rs1472753711 3539 dbSNP
rs1178067670 3545 dbSNP
rs768564051 3546 dbSNP
rs1402939481 3553 dbSNP
rs1160293986 3558 dbSNP
rs1358907750 3561 dbSNP
rs1464248947 3563 dbSNP
rs1338351347 3564 dbSNP
rs746856992 3570 dbSNP
rs1383024283 3573 dbSNP
rs528453734 3575 dbSNP
rs1306435275 3577 dbSNP
rs905368096 3585 dbSNP
rs1224208590 3589 dbSNP
rs1277697252 3591 dbSNP
rs1310171223 3593 dbSNP
rs1436401569 3594 dbSNP
rs1265278864 3595 dbSNP
rs906455523 3599 dbSNP
rs1201467005 3605 dbSNP
rs1023843656 3609 dbSNP
rs1344403466 3611 dbSNP
rs1178231895 3615 dbSNP
rs1425051755 3621 dbSNP
rs1013755906 3623 dbSNP
rs1004287267 3625 dbSNP
rs1406434578 3628 dbSNP
rs886815389 3629 dbSNP
rs1261412984 3633 dbSNP
rs1230286022 3653 dbSNP
rs896502560 3659 dbSNP
rs548132005 3660 dbSNP
rs1355737012 3661 dbSNP
rs931095490 3665 dbSNP
rs920747326 3670 dbSNP
rs1047479481 3671 dbSNP
rs1407795815 3676 dbSNP
rs1341996252 3680 dbSNP
rs1334766351 3682 dbSNP
rs929971740 3683 dbSNP
rs898606559 3691 dbSNP
rs1413774944 3697 dbSNP
rs368267282 3697 dbSNP
rs74869946 3700 dbSNP
rs912139418 3703 dbSNP
rs1160819745 3710 dbSNP
rs562559630 3715 dbSNP
rs942551580 3717 dbSNP
rs911020511 3720 dbSNP
rs986724736 3721 dbSNP
rs1202053371 3734 dbSNP
rs1430333342 3736 dbSNP
rs780368883 3738 dbSNP
rs1043515 3748 dbSNP
rs912915536 3750 dbSNP
rs142086544 3756 dbSNP
rs149055981 3762 dbSNP
rs989545675 3762 dbSNP
rs750478912 3777 dbSNP
rs979780999 3783 dbSNP
rs1339543314 3784 dbSNP
rs969534941 3805 dbSNP
rs1241808656 3807 dbSNP
rs540065854 3808 dbSNP
rs1023727655 3817 dbSNP
rs1268678847 3820 dbSNP
rs778886145 3822 dbSNP
rs896752834 3834 dbSNP
rs970629535 3861 dbSNP
rs1289164973 3878 dbSNP
rs1025306810 3879 dbSNP
rs1270084344 3882 dbSNP
rs1210711274 3884 dbSNP
rs1191448835 3896 dbSNP
rs1243558105 3902 dbSNP
rs1475531034 3903 dbSNP
rs1329883930 3906 dbSNP
rs1004165726 3909 dbSNP
rs1164185705 3928 dbSNP
rs886760587 3944 dbSNP
rs1048075077 3950 dbSNP
rs1326663823 3951 dbSNP
rs995194881 3951 dbSNP
rs899607465 3952 dbSNP
rs757407358 3956 dbSNP
rs1039146668 3958 dbSNP
rs1248240952 3959 dbSNP
rs144963817 3984 dbSNP
rs1353618173 3985 dbSNP
rs994612630 3997 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gaccccccaucuaCUUCUCu 5'
                       ||:||| 
Target 5' -----------aaGAGGAGg 3'
 		1 - 9
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000269554.3 | 3UTR | AAGAGGAGGGGGAUGUGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
181 hsa-miR-6515-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059268 CELF1 CUGBP Elav-like family member 1 2 2
MIRT063207 ADIPOR2 adiponectin receptor 2 2 2
MIRT118973 SOWAHC sosondowah ankyrin repeat domain family member C 2 2
MIRT234292 PIP4K2B phosphatidylinositol-5-phosphate 4-kinase type 2 beta 2 2
MIRT305089 SRPRB SRP receptor beta subunit 2 4
MIRT316916 ATXN1 ataxin 1 2 2
MIRT320191 ITGB8 integrin subunit beta 8 2 2
MIRT366351 SCML2 Scm polycomb group protein like 2 2 2
MIRT443924 ZNF99 zinc finger protein 99 2 6
MIRT445622 CLIC4 chloride intracellular channel 4 2 2
MIRT447378 AGPAT5 1-acylglycerol-3-phosphate O-acyltransferase 5 2 2
MIRT463191 ZNF275 zinc finger protein 275 2 4
MIRT472656 NAA25 N(alpha)-acetyltransferase 25, NatB auxiliary subunit 2 4
MIRT478997 COLGALT1 collagen beta(1-O)galactosyltransferase 1 2 2
MIRT497221 MORC2 MORC family CW-type zinc finger 2 2 2
MIRT498343 PRELID2 PRELI domain containing 2 2 2
MIRT498362 PRMT3 protein arginine methyltransferase 3 2 2
MIRT501097 SLC5A6 solute carrier family 5 member 6 2 4
MIRT505086 ZBTB18 zinc finger and BTB domain containing 18 2 6
MIRT507527 DSTN destrin, actin depolymerizing factor 2 4
MIRT525793 SOD2 superoxide dismutase 2 2 2
MIRT544401 ZSCAN12 zinc finger and SCAN domain containing 12 2 2
MIRT558808 CDK6 cyclin dependent kinase 6 2 4
MIRT559126 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT566474 PEG10 paternally expressed 10 2 2
MIRT607261 GRAMD1B GRAM domain containing 1B 2 4
MIRT609251 LIN52 lin-52 DREAM MuvB core complex component 2 2
MIRT610065 MYBPC1 myosin binding protein C, slow type 2 2
MIRT610135 FOXI2 forkhead box I2 2 4
MIRT610280 PLCXD3 phosphatidylinositol specific phospholipase C X domain containing 3 2 2
MIRT611285 PAGR1 PAXIP1 associated glutamate rich protein 1 2 4
MIRT611353 KIAA2018 upstream transcription factor family member 3 2 2
MIRT611812 FCRL4 Fc receptor like 4 2 2
MIRT611898 TRPC3 transient receptor potential cation channel subfamily C member 3 2 2
MIRT612749 MYOCD myocardin 2 2
MIRT614180 FAM53B family with sequence similarity 53 member B 2 2
MIRT614825 PVRL4 nectin cell adhesion molecule 4 2 2
MIRT616702 UBXN2A UBX domain protein 2A 2 2
MIRT616970 HMGB1 high mobility group box 1 2 2
MIRT616992 COL19A1 collagen type XIX alpha 1 chain 2 2
MIRT617132 ZNF556 zinc finger protein 556 2 4
MIRT617595 NUDT5 nudix hydrolase 5 2 4
MIRT617997 KSR2 kinase suppressor of ras 2 2 2
MIRT619451 NUP214 nucleoporin 214 2 2
MIRT619507 TXLNB taxilin beta 2 2
MIRT619547 GABRG2 gamma-aminobutyric acid type A receptor gamma2 subunit 2 2
MIRT619719 FCF1 FCF1, rRNA-processing protein 2 2
MIRT619806 CDC42EP4 CDC42 effector protein 4 2 2
MIRT619939 C8orf33 chromosome 8 open reading frame 33 2 2
MIRT620456 CENPN centromere protein N 2 2
MIRT621054 DGKD diacylglycerol kinase delta 2 2
MIRT622730 PITPNM3 PITPNM family member 3 2 2
MIRT623010 ONECUT3 one cut homeobox 3 2 2
MIRT623432 KIAA1161 myogenesis regulating glycosidase (putative) 2 2
MIRT624379 CDH4 cadherin 4 2 2
MIRT624493 CABP4 calcium binding protein 4 2 2
MIRT625740 MTSS1 MTSS1, I-BAR domain containing 2 2
MIRT627048 HOXA13 homeobox A13 2 2
MIRT630857 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 2
MIRT632232 VTA1 vesicle trafficking 1 2 2
MIRT632978 E2F2 E2F transcription factor 2 2 2
MIRT635721 CCL16 C-C motif chemokine ligand 16 2 2
MIRT636489 GRIN2B glutamate ionotropic receptor NMDA type subunit 2B 2 2
MIRT637743 POLR3K RNA polymerase III subunit K 2 2
MIRT639610 SLC25A32 solute carrier family 25 member 32 2 4
MIRT639878 STC1 stanniocalcin 1 2 2
MIRT640507 ANTXR1 anthrax toxin receptor 1 2 2
MIRT640910 RAB13 RAB13, member RAS oncogene family 2 2
MIRT641864 STOML1 stomatin like 1 2 2
MIRT641989 OXSR1 oxidative stress responsive 1 2 2
MIRT642897 CASP1 caspase 1 2 2
MIRT643210 TYW3 tRNA-yW synthesizing protein 3 homolog 2 4
MIRT643970 FHL2 four and a half LIM domains 2 2 4
MIRT644517 TADA2A transcriptional adaptor 2A 2 2
MIRT644564 SPOP speckle type BTB/POZ protein 2 2
MIRT644738 CCDC174 coiled-coil domain containing 174 2 2
MIRT645518 ZWINT ZW10 interacting kinetochore protein 2 2
MIRT645597 MRPS15 mitochondrial ribosomal protein S15 2 2
MIRT646262 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT646467 PRDM10 PR/SET domain 10 2 2
MIRT646623 CENPL centromere protein L 2 2
MIRT646797 EVC2 EvC ciliary complex subunit 2 2 2
MIRT647188 ANKRD45 ankyrin repeat domain 45 2 2
MIRT647254 PTGDR2 prostaglandin D2 receptor 2 2 2
MIRT647895 EPN2 epsin 2 2 2
MIRT648129 SEMA3E semaphorin 3E 2 4
MIRT648133 JAGN1 jagunal homolog 1 2 2
MIRT648361 AKIP1 A-kinase interacting protein 1 2 2
MIRT648574 CAPN13 calpain 13 2 2
MIRT648622 CYB561A3 cytochrome b561 family member A3 2 2
MIRT649441 HIBADH 3-hydroxyisobutyrate dehydrogenase 2 2
MIRT649456 WDR70 WD repeat domain 70 2 2
MIRT649479 CLDN16 claudin 16 2 2
MIRT649552 FAM20B FAM20B, glycosaminoglycan xylosylkinase 2 2
MIRT650060 CCDC134 coiled-coil domain containing 134 2 2
MIRT650272 KLF2 Kruppel like factor 2 2 4
MIRT650290 PYCARD PYD and CARD domain containing 2 2
MIRT651327 ZCCHC2 zinc finger CCHC-type containing 2 2 2
MIRT652194 TRIM39 tripartite motif containing 39 2 2
MIRT652284 TNS4 tensin 4 2 2
MIRT652386 TMEM55A phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 2 2
MIRT652702 THBS2 thrombospondin 2 2 2
MIRT652782 TEAD1 TEA domain transcription factor 1 2 2
MIRT653087 SSR3 signal sequence receptor subunit 3 2 2
MIRT653836 SHISA9 shisa family member 9 2 2
MIRT654147 RPAP2 RNA polymerase II associated protein 2 2 2
MIRT655016 PLA2G16 phospholipase A2 group XVI 2 2
MIRT655065 PKIA cAMP-dependent protein kinase inhibitor alpha 2 2
MIRT655217 PFKM phosphofructokinase, muscle 2 2
MIRT655267 PER2 period circadian clock 2 2 2
MIRT655772 NPTX1 neuronal pentraxin 1 2 2
MIRT655791 NOVA2 NOVA alternative splicing regulator 2 2 2
MIRT656556 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT656831 KLF8 Kruppel like factor 8 2 2
MIRT656887 KIF1C kinesin family member 1C 2 2
MIRT657295 HOXB5 homeobox B5 2 2
MIRT657346 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 2
MIRT657967 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT658082 FOXR2 forkhead box R2 2 2
MIRT658133 FMN1 formin 1 2 2
MIRT658163 FCHSD1 FCH and double SH3 domains 1 2 2
MIRT658787 EIF2B2 eukaryotic translation initiation factor 2B subunit beta 2 2
MIRT658928 DPY19L1 dpy-19 like C-mannosyltransferase 1 2 2
MIRT659989 C2CD2L C2CD2 like 2 2
MIRT660012 C1orf115 chromosome 1 open reading frame 115 2 4
MIRT660295 BICC1 BicC family RNA binding protein 1 2 2
MIRT662571 IL2RA interleukin 2 receptor subunit alpha 2 2
MIRT664406 AQP3 aquaporin 3 (Gill blood group) 2 2
MIRT667402 MIB1 mindbomb E3 ubiquitin protein ligase 1 2 2
MIRT667621 LIMCH1 LIM and calponin homology domains 1 2 2
MIRT668421 FAM217B family with sequence similarity 217 member B 2 2
MIRT668524 ESRRG estrogen related receptor gamma 2 2
MIRT668680 DR1 down-regulator of transcription 1 2 2
MIRT695383 NSA2 NSA2, ribosome biogenesis homolog 2 2
MIRT702511 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT709032 KBTBD13 kelch repeat and BTB domain containing 13 2 2
MIRT710831 PLEKHO2 pleckstrin homology domain containing O2 2 2
MIRT710967 CMKLR1 chemerin chemokine-like receptor 1 2 2
MIRT711145 TMEM174 transmembrane protein 174 2 2
MIRT711176 EMCN endomucin 2 2
MIRT711205 SMIM14 small integral membrane protein 14 2 2
MIRT711589 SETD1A SET domain containing 1A 2 2
MIRT711751 DTX1 deltex E3 ubiquitin ligase 1 2 2
MIRT712258 PTPRN2 protein tyrosine phosphatase, receptor type N2 2 2
MIRT712376 MTPN myotrophin 2 2
MIRT713780 ZNF460 zinc finger protein 460 2 2
MIRT714560 LMTK2 lemur tyrosine kinase 2 2 2
MIRT714983 RAB21 RAB21, member RAS oncogene family 2 2
MIRT716253 PALM2 paralemmin 2 2 2
MIRT716362 RPS9 ribosomal protein S9 2 2
MIRT716485 SAMD7 sterile alpha motif domain containing 7 2 2
MIRT716640 DPY19L4 dpy-19 like 4 2 2
MIRT717034 KRTAP4-9 keratin associated protein 4-9 2 2
MIRT717422 SURF6 surfeit 6 2 2
MIRT717891 GBP4 guanylate binding protein 4 2 2
MIRT718646 NKPD1 NTPase KAP family P-loop domain containing 1 2 2
MIRT719230 ARL11 ADP ribosylation factor like GTPase 11 2 2
MIRT719279 SETD7 SET domain containing lysine methyltransferase 7 2 2
MIRT719353 GDF7 growth differentiation factor 7 2 2
MIRT719513 TMEM175 transmembrane protein 175 2 2
MIRT719618 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT719882 NECAB3 N-terminal EF-hand calcium binding protein 3 2 2
MIRT720184 CMC4 C-X9-C motif containing 4 2 2
MIRT720249 FAM83F family with sequence similarity 83 member F 2 2
MIRT720343 BACE2 beta-site APP-cleaving enzyme 2 2 2
MIRT720487 TMEM178B transmembrane protein 178B 2 2
MIRT720937 PPP1R3E protein phosphatase 1 regulatory subunit 3E 2 2
MIRT721168 NSG1 neuronal vesicle trafficking associated 1 2 2
MIRT721499 THRB thyroid hormone receptor beta 2 2
MIRT721518 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT721570 SLC5A12 solute carrier family 5 member 12 2 2
MIRT721865 CENPJ centromere protein J 2 2
MIRT721871 RHOH ras homolog family member H 2 2
MIRT722330 PKHD1 PKHD1, fibrocystin/polyductin 2 2
MIRT722494 PNKD paroxysmal nonkinesigenic dyskinesia 2 2
MIRT722775 KCNK5 potassium two pore domain channel subfamily K member 5 2 2
MIRT723967 GPR146 G protein-coupled receptor 146 2 2
MIRT724488 CSNK1A1 casein kinase 1 alpha 1 2 2
MIRT724748 ZNF391 zinc finger protein 391 2 2
MIRT725274 OSTM1 osteopetrosis associated transmembrane protein 1 2 2
MIRT725373 MTF2 metal response element binding transcription factor 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6515-3p Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-6515-3p Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-6515-3p Cisplatin 5460033 NSC119875 approved resistant High Hypopharyngeal Cancer cell line (FaDu)
hsa-miR-6515-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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