miRTarBase - #MIRT235839


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pre-miRNA Information
pre-miRNA hsa-mir-6733   
Genomic Coordinates chr1: 43171652 - 43171712
Description Homo sapiens miR-6733 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6733-5p
Sequence 6| UGGGAAAGACAAACUCAGAGUU |27
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs953882106 3 dbSNP
rs371499741 9 dbSNP
rs778441909 21 dbSNP
rs1348902205 22 dbSNP
Putative Targets

Gene Information
Gene Symbol FAM217B   
Synonyms C20orf177, dJ551D2.5
Description family with sequence similarity 217 member B
Transcript NM_022106   
Expression
Putative miRNA Targets on FAM217B
3'UTR of FAM217B
(miRNA target sites are highlighted)		 
>FAM217B|NM_022106|3'UTR
   1 ATATCTAAAATGCTGAATTGCCAAGACCTGCAGGTACCTCAATGTTAGAGCGCTTCCAAAAGTCAAAATACTGTGAATTT
  81 TAAGGAATTTTACAAATACTGACATTTAAGTAGTTGACTGGCATTTTTGTCCACCTTTATTTCTACCCTGAGTGGGGTTA
 161 TTTTCAAAGGGAAGTGTCTTTCAATAAGCCTTTCTTTGTATTGTCAGTCTTAGGCAAATGAGAGCCCTTTAGATAAAAAT
 241 TATGTAAAATATGTGCCATATAAAGGAATAAAATGGCACCTCTCCAGGGAAAGTGTCAGTGAAACCTCAGCTACAGTAGC
 321 CGGTCTGTGTAGAGCAGCTAGTGGTGTTACCTCCCCATTTTCACATGCACGTAAGTATATGAAATAGTGCAGACTGTTTC
 401 AAATGGTGTGGAATCCTAAATGTTTAAAATAAGGTCCTTCTTGCCCACTCCCTCGCTTACTTTTTTATAAACTCCTCAAG
 481 CAAAATTTCTGTTCATTTTACCCTTAGGAGAAGCTTTAGTTCTTCCTCAAGTCAGGGAGTAGTGAGTTTGTATTTTGAGT
 561 AGTCATTTCTCACTAAGCTGGTTGCTTTCTAGAGAGACAGTGGAATCTAGTACTTTAATACATTTTCTCTGACATGGTTT
 641 TTTTTTTCTTTTTTGAGGGGCATTTTAAACTTAGAGGTGGTGGTAAAACCTACTTTTGAGTTCTCCGAACTGAGGTTAAA
 721 ATAACTTGCAGAATTTTCCAAAGTCAATGGGCTTAGCATGATTACTGCTGTTTGGTGGGGCTGAGAATGAAATATTTGAC
 801 ATTCTGGAATTGCTGGCATGTAAAGCTTCTCCAGAGAGGCACCCCAGGGAAATCACTCTTTACAATTTGTAAAGGAAGGG
 881 CCTGTAAAAGGATCAAAACACATGGACCTACATTCAGTGTAATAGTTACAAAGTTACTGATTTGGGTTCCACACCCTGTG
 961 GTCCTTAGTCAAAAATAATGATCTGTTTCAGTTTGCAAGAGCAGGATTTTATTATTTTGCTTGGGGTGAGGGGCGGGAGA
1041 GTGGAATATGAGTAAGGTTGCTGAATGAATTCTAAACTCGCTTATCTGGTCTTCAGGCTTCCCAACTCTCTCCAAGCCTT
1121 CTTATTTCACTGCAGTTAAATAACATCTTCTTGTTCCTATAGTTGTGCTGTGAGTTTTCTGTTCATATTTGCGCAGTGTA
1201 TTTTAATACGGCCCATGTCATTATAGTTGATTTTATCCCTTTAAACAATTACTGTATTTGTTTTTGACGTAGAGGTTTCA
1281 ATTTTTTCACCTTGGGGGCAAATGAAAAACTTGGCATTTTTCATTTGGGAACATATAATAGCTTGTAAACTTTTCAGACA
1361 GCAGTAAATGTCTGAAAAAATATCAAAAACAGCATAAAGACAAGATTATGTAGCTCTAATTATACGTATATAATTATAAA
1441 AAACAATGTGCAAGGGTTATATTTTAAGGTCTTTTAAAATCTGATTTTGATCATACCAAATGACATAATATTTTTTATGG
1521 TAGCCTTTTACTTTCAAGACTTAATTTTCAGACTTGTACAAGTTCCTTCTTACATTCTTTCCCTCTCACACCATCCTACT
1601 GGAGAAAGCATACTTTTATGCTAAGATCTTACTTTAAGCTTTTTATGTGAACAAAAGATGTACATATAGTAAGTATTACT
1681 TCCGTAGTCCTCAAATTTACTATAACTTTTGTACTTAGTATATGTTTTATATTTGGAAAACAGCACTACGCTTAGTTTTC
1761 CTGTAGTTCCTGAGTGATGTCTGTGTGTTCCTTGCCTGCCCTTTTTTGTGAGCACAGATTAGTCTGTTATCCATGGCTGG
1841 CACTTCACTTATGATCCTTTCTCTGCTAGATTTTTATGCAGCTCTCTATGAAGTTTCATGGCCCATAGATATTCAAAAGC
1921 AAGATATTCTATACATATGTGTATATGTATATATACTCCTTATGTTAATACTAAAGTGTTTATGCTGAGTTGCTGCCTTT
2001 CCCCGTCATGTATCCATGTGCATGCTCTTAGAGACCTTGAATGGTTGAGGGTAAAGTGATTTATTAGTAATTCTACTTGC
2081 CTTGTGTATGTCTGAGCTGAAAACAATCGTGATTAAGAAATTTAGAGGTGGCTGGGCGTGGTGGCTCACGCCTGTAATCC
2161 CAGCACTTTGGGAGGCCGAGGCAGGCGGATCACCTGAGGTCGGGAGTTCAAGACCAGCCTGACCAACATGGAGAAACCCT
2241 GTCTCCACTAAAAATACAAAATTAGCCGGGTGTGGTGGTGCATGCCTGTAATCCCAGCTACTCGGAAGTTTGAGACGAGA
2321 ATCTCTTGAACCCGGGAGGCGGAGGTTGTGGTGAGCCAAGATCGTGCCATTGCACTCCAGCCTGGGCAACAAGAGGGAAA
2401 CTCCGTTTCAAAAAAAAAAGAAAAAGAAAGAAATTGAGAAGTAACGCCTCATAATATTTGTTCCCAGCTTTTTAAATTGA
2481 AGCTGGTTGCATAATCTGGGGAATAGTCATAATTTCATGTGTTATACAGTTTAAAAAGCCTGCAAAAGTGACTTTGCTTG
2561 TTTACTTTCTGCCTCAGATTGACTATTTTAACCAATATTGTCACGACTAGATCATAGCTCCTAGTGAATAACATGAGGTG
2641 TTTTAAAGTTAGGTCTATTACAGAATTAACATAAGCACAATTTTAATTTTATGATATCTGATATGCCTATCTAATACATC
2721 TTAATGCATTAAATGCTGCAGATAAGAATCTTGCTATTTTTCAAGTAGACAACATTAGAAAGTTGAATCATGAACTCATT
2801 CAATTCATCAAGTCAAAAGCACTGAGTGTTTTGCTAGTCTAGTGACATGGGTTATTGTATTTCCGAGAAGTGCCTCTCAT
2881 TTCTGGGGAGTTGTTTACATATACCCTGCATTTAAACCAATTAAAACAATCCAAGTTTCTTTAAAAAAAAAAAGAAAAAG
2961 AAAAAGAAAAAGAAAAATATTTTAGGCTTAGAATTATCTAATGGAAAAAATGTAAAAAAGTACAAAAATGAACTAAAAGT
3041 ATATCAGTATTTGCAGTATTTGCTGTGATTACTTAGGTTTAGACTTTCTCAACTTCTTAGATGACTAAATGGGCTGAAGA
3121 CTTGTAACTAACTTGAATAGGATAGACTTCATACCCTGTGACAAAAAGGATGGGGAAGAGAATATCATTGGTCTTGCCAT
3201 ATACCTCCTAGCTAAAAGGAAAATGGTTTGTAGTTGTTCTTGGGCCTACTGTGTTGCTTTTCAGAAGGACATAAGACTTT
3281 CTACTTTATCTGATATGGATATCGTCTACTTCCTCATTCCTTTATGCTCACTTATGGAGTAGTTACATAGAAATATAACT
3361 CTTGGTGGTACTGTATTTTAAGGTAATTCAGAAGCAGTATGTATTATTTATGTACATGTACAGGACACCATTCAAAATGG
3441 CTTGAAAATATTCAGCATGTTTGTTATTTGCTGTTATATTGTATGTTTAGTTTTGTATGTGATAAACAGAATTGATGTAA
3521 GTTTTTGTGGACTTGAATTTCTCCTTCCTTGA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uugaGACUCAA--ACAGAAAGGGu 5'
              |||||||  || ||||||| 
Target 5' tatgCTGAGTTGCTGCCTTTCCCc 3'
 1981 - 2004 172.00 -19.50
2 
miRNA  3' uuGAGACUCAAACAGAAAGGGu 5'
            :||| |  |  |||||||| 
Target 5' ccTTCTTACAT--TCTTTCCCt 3'
 1565 - 1584 152.00 -10.60
3 
miRNA  3' uuGAGACUCAAACAGAAAGGGu 5'
            ||: |: || | |||||:| 
Target 5' taCTTAGGTTTAGACTTTCTCa 3'
 3070 - 3091 144.00 -11.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30525375 8 COSMIC
COSN30529062 50 COSMIC
COSN30176683 65 COSMIC
COSN30528175 91 COSMIC
COSN30538572 100 COSMIC
COSN28780242 117 COSMIC
COSN28382707 171 COSMIC
COSN30139872 191 COSMIC
COSN30130428 209 COSMIC
COSN30530880 220 COSMIC
COSN30126833 250 COSMIC
COSN26508617 300 COSMIC
COSN17914444 327 COSMIC
COSN30113531 372 COSMIC
COSN30124334 372 COSMIC
COSN30139866 380 COSMIC
COSN20641187 390 COSMIC
COSN15623997 467 COSMIC
COSN28100815 467 COSMIC
COSN31546973 476 COSMIC
COSN30114358 495 COSMIC
COSN31515814 590 COSMIC
COSN30121873 628 COSMIC
COSN20587775 638 COSMIC
COSN28483386 648 COSMIC
COSN17076286 660 COSMIC
COSN29805113 670 COSMIC
COSN30131023 704 COSMIC
COSN31481756 746 COSMIC
COSN26958277 805 COSMIC
COSN15623998 849 COSMIC
COSN30142849 907 COSMIC
COSN30544126 1020 COSMIC
COSN31609409 1073 COSMIC
COSN30169926 1081 COSMIC
COSN30113661 1098 COSMIC
COSN7100091 1107 COSMIC
COSN30528007 1114 COSMIC
COSN30122206 1146 COSMIC
COSN31568666 1151 COSMIC
COSN31591185 1193 COSMIC
COSN30125445 1194 COSMIC
COSN30138159 1269 COSMIC
COSN30124046 1329 COSMIC
COSN17561252 1343 COSMIC
COSN30127668 1346 COSMIC
COSN30528608 1350 COSMIC
COSN24762692 1384 COSMIC
COSN30125154 1390 COSMIC
COSN30172699 1405 COSMIC
COSN30141490 1427 COSMIC
COSN5975978 1431 COSMIC
COSN30531887 1499 COSMIC
COSN30112272 1503 COSMIC
COSN30114752 1562 COSMIC
COSN31546562 1578 COSMIC
COSN26563011 1650 COSMIC
COSN30130792 1685 COSMIC
COSN15623999 1690 COSMIC
COSN7100092 1708 COSMIC
COSN16631479 1751 COSMIC
COSN30534845 1767 COSMIC
COSN31609965 1870 COSMIC
COSN31488810 1891 COSMIC
COSN30130835 1920 COSMIC
COSN15624000 2034 COSMIC
COSN30116653 2083 COSMIC
COSN30129248 2120 COSMIC
COSN22465182 2126 COSMIC
COSN10019202 2215 COSMIC
COSN30115810 2244 COSMIC
COSN23441656 2317 COSMIC
COSN30126818 2367 COSMIC
COSN32169107 2437 COSMIC
COSN19660864 2606 COSMIC
COSN5446864 2664 COSMIC
COSN22148426 2726 COSMIC
COSN15624001 2733 COSMIC
COSN15624002 2888 COSMIC
COSN26600637 2890 COSMIC
COSN19658068 2943 COSMIC
COSN29013664 2954 COSMIC
COSN9145643 3018 COSMIC
COSN15624003 3304 COSMIC
COSN8611202 3392 COSMIC
COSN23277200 3507 COSMIC
COSN15624004 3548 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs773440774 1 dbSNP
rs1277937145 3 dbSNP
rs763078883 22 dbSNP
rs1188963818 23 dbSNP
rs767530124 29 dbSNP
rs1247279991 34 dbSNP
rs1426792502 35 dbSNP
rs937609251 38 dbSNP
rs775268053 39 dbSNP
rs1374139118 43 dbSNP
rs1463984294 44 dbSNP
rs1286497803 51 dbSNP
rs369404260 52 dbSNP
rs763790391 53 dbSNP
rs751442566 54 dbSNP
rs1460626609 71 dbSNP
rs1183796293 73 dbSNP
rs1204696406 86 dbSNP
rs1319106455 93 dbSNP
rs1260393720 112 dbSNP
rs1217377420 113 dbSNP
rs990076373 119 dbSNP
rs187606197 121 dbSNP
rs947436666 124 dbSNP
rs1041866498 125 dbSNP
rs923452778 127 dbSNP
rs777638254 133 dbSNP
rs903178231 137 dbSNP
rs1008612628 146 dbSNP
rs6071037 147 dbSNP
rs1465086901 148 dbSNP
rs753969599 148 dbSNP
rs1429936510 150 dbSNP
rs1479187572 152 dbSNP
rs1430954852 154 dbSNP
rs899724623 157 dbSNP
rs191084182 159 dbSNP
rs182929561 161 dbSNP
rs941677475 174 dbSNP
rs1036004871 185 dbSNP
rs1174034400 186 dbSNP
rs1197167724 201 dbSNP
rs1240465849 201 dbSNP
rs6128724 214 dbSNP
rs1026761841 215 dbSNP
rs1457564626 225 dbSNP
rs897757417 228 dbSNP
rs1235991543 234 dbSNP
rs1310581354 244 dbSNP
rs1405046770 245 dbSNP
rs952570204 252 dbSNP
rs1003914365 259 dbSNP
rs1307291695 263 dbSNP
rs186097749 277 dbSNP
rs1402564164 279 dbSNP
rs1015793515 280 dbSNP
rs374926120 283 dbSNP
rs1464478966 286 dbSNP
rs1358113017 287 dbSNP
rs1158699897 291 dbSNP
rs982144409 293 dbSNP
rs1378128406 295 dbSNP
rs1307726959 297 dbSNP
rs1331876941 302 dbSNP
rs905022630 309 dbSNP
rs1439481180 310 dbSNP
rs528121750 317 dbSNP
rs1002058750 318 dbSNP
rs1262962496 319 dbSNP
rs1202778671 321 dbSNP
rs1482547109 322 dbSNP
rs539825751 323 dbSNP
rs147443862 327 dbSNP
rs991766821 328 dbSNP
rs1239622757 330 dbSNP
rs1257399282 333 dbSNP
rs528919625 335 dbSNP
rs1340904791 336 dbSNP
rs550769582 346 dbSNP
rs1394268711 358 dbSNP
rs1020214472 363 dbSNP
rs968065417 366 dbSNP
rs1420989651 370 dbSNP
rs569063597 371 dbSNP
rs1041918805 372 dbSNP
rs1458095664 376 dbSNP
rs1369452802 378 dbSNP
rs953577510 380 dbSNP
rs533361617 384 dbSNP
rs1190026665 385 dbSNP
rs1422386656 390 dbSNP
rs986661940 395 dbSNP
rs924651476 396 dbSNP
rs190080721 404 dbSNP
rs1283956732 411 dbSNP
rs1216213425 412 dbSNP
rs1041415102 421 dbSNP
rs567041123 422 dbSNP
rs1242379162 423 dbSNP
rs369996553 425 dbSNP
rs6128725 434 dbSNP
rs1278776234 435 dbSNP
rs899860914 438 dbSNP
rs1166009255 439 dbSNP
rs550491365 444 dbSNP
rs776590698 453 dbSNP
rs570400532 455 dbSNP
rs1046303331 456 dbSNP
rs888271445 456 dbSNP
rs1003968068 459 dbSNP
rs905076024 459 dbSNP
rs534226141 460 dbSNP
rs970858540 464 dbSNP
rs367881271 469 dbSNP
rs1452210305 472 dbSNP
rs1269742054 476 dbSNP
rs1208224382 490 dbSNP
rs1488067521 492 dbSNP
rs1003305542 496 dbSNP
rs1033749409 503 dbSNP
rs1315968673 511 dbSNP
rs1283199288 527 dbSNP
rs139757889 537 dbSNP
rs772383740 538 dbSNP
rs1221308697 540 dbSNP
rs1020266995 541 dbSNP
rs1385862928 553 dbSNP
rs567778122 564 dbSNP
rs1394294015 572 dbSNP
rs1332432869 579 dbSNP
rs538303616 581 dbSNP
rs1271264319 582 dbSNP
rs903183446 587 dbSNP
rs758761790 589 dbSNP
rs556691326 590 dbSNP
rs1167774133 591 dbSNP
rs372064503 592 dbSNP
rs1379427362 598 dbSNP
rs183425622 600 dbSNP
rs953731932 604 dbSNP
rs1274800548 615 dbSNP
rs558061314 619 dbSNP
rs1016426487 622 dbSNP
rs1220256369 623 dbSNP
rs944108479 623 dbSNP
rs1456250458 628 dbSNP
rs1272213124 632 dbSNP
rs963146437 637 dbSNP
rs1272571320 638 dbSNP
rs1346580835 638 dbSNP
rs971803662 638 dbSNP
rs539686154 639 dbSNP
rs949087930 641 dbSNP
rs1478284793 649 dbSNP
rs1192733354 655 dbSNP
rs1417084312 656 dbSNP
rs1428190344 657 dbSNP
rs1171378651 660 dbSNP
rs982146034 661 dbSNP
rs1422827257 664 dbSNP
rs1302563601 673 dbSNP
rs1366759979 676 dbSNP
rs921261170 679 dbSNP
rs1439174089 680 dbSNP
rs932687981 684 dbSNP
rs552719026 693 dbSNP
rs1453821648 694 dbSNP
rs1048389682 703 dbSNP
rs1180674817 707 dbSNP
rs888322390 708 dbSNP
rs747403706 709 dbSNP
rs1437610327 712 dbSNP
rs1232078111 715 dbSNP
rs937897577 734 dbSNP
rs1444038231 736 dbSNP
rs1053580006 742 dbSNP
rs1276357488 744 dbSNP
rs893624066 754 dbSNP
rs1353715614 756 dbSNP
rs947515904 759 dbSNP
rs1375227572 766 dbSNP
rs1279303977 767 dbSNP
rs939957999 768 dbSNP
rs1213689386 769 dbSNP
rs1332729433 770 dbSNP
rs1037241194 776 dbSNP
rs187585313 811 dbSNP
rs771377704 813 dbSNP
rs906393119 823 dbSNP
rs777135617 829 dbSNP
rs545213831 839 dbSNP
rs1290341976 850 dbSNP
rs903225064 857 dbSNP
rs1235666887 881 dbSNP
rs1452146927 897 dbSNP
rs1187066261 898 dbSNP
rs528956673 909 dbSNP
rs566418600 913 dbSNP
rs73917276 914 dbSNP
rs1290082131 918 dbSNP
rs1010539558 920 dbSNP
rs562237254 930 dbSNP
rs1240197169 953 dbSNP
rs1052168276 955 dbSNP
rs1414693623 957 dbSNP
rs1341279743 961 dbSNP
rs1300083581 968 dbSNP
rs1021989915 973 dbSNP
rs968931589 983 dbSNP
rs747033921 984 dbSNP
rs977730289 986 dbSNP
rs1165662918 992 dbSNP
rs769174773 1000 dbSNP
rs533611663 1003 dbSNP
rs965613722 1004 dbSNP
rs1478086621 1016 dbSNP
rs376351280 1024 dbSNP
rs921312756 1027 dbSNP
rs932740510 1031 dbSNP
rs1485237958 1035 dbSNP
rs984061096 1036 dbSNP
rs1414588625 1038 dbSNP
rs1223241717 1039 dbSNP
rs1453749555 1047 dbSNP
rs909897524 1057 dbSNP
rs939925718 1058 dbSNP
rs1316832694 1059 dbSNP
rs1280595838 1063 dbSNP
rs1212883743 1072 dbSNP
rs768566695 1075 dbSNP
rs192770575 1076 dbSNP
rs906352825 1080 dbSNP
rs1324942742 1081 dbSNP
rs1465900537 1082 dbSNP
rs1402408894 1083 dbSNP
rs959308121 1092 dbSNP
rs989356279 1093 dbSNP
rs1322906589 1095 dbSNP
rs1168371605 1103 dbSNP
rs781045254 1106 dbSNP
rs775116165 1109 dbSNP
rs747937565 1113 dbSNP
rs535205044 1118 dbSNP
rs112391478 1127 dbSNP
rs1458442177 1129 dbSNP
rs555490084 1134 dbSNP
rs549408420 1139 dbSNP
rs1302027231 1144 dbSNP
rs1356417985 1146 dbSNP
rs1369075119 1148 dbSNP
rs1010673960 1149 dbSNP
rs1230023755 1154 dbSNP
rs1051794565 1156 dbSNP
rs567618890 1159 dbSNP
rs889111437 1167 dbSNP
rs1402132526 1182 dbSNP
rs1021957665 1185 dbSNP
rs902205270 1193 dbSNP
rs1461419811 1194 dbSNP
rs1282069565 1198 dbSNP
rs1316210037 1210 dbSNP
rs999510424 1211 dbSNP
rs1037965506 1216 dbSNP
rs763840912 1223 dbSNP
rs1394134651 1227 dbSNP
rs966021140 1234 dbSNP
rs1249622253 1235 dbSNP
rs976906443 1244 dbSNP
rs538232224 1246 dbSNP
rs1240408461 1249 dbSNP
rs1183203412 1255 dbSNP
rs182634311 1269 dbSNP
rs984196692 1270 dbSNP
rs970532950 1276 dbSNP
rs774242228 1282 dbSNP
rs571627666 1289 dbSNP
rs1407915432 1294 dbSNP
rs571982935 1294 dbSNP
rs909866240 1297 dbSNP
rs940073037 1299 dbSNP
rs761718080 1301 dbSNP
rs539640702 1302 dbSNP
rs927864951 1313 dbSNP
rs1390798719 1324 dbSNP
rs1379837618 1332 dbSNP
rs939285033 1333 dbSNP
rs145244194 1334 dbSNP
rs1374306971 1335 dbSNP
rs1158946185 1338 dbSNP
rs1340631873 1345 dbSNP
rs1449601450 1348 dbSNP
rs916446675 1354 dbSNP
rs946431869 1363 dbSNP
rs1157399823 1371 dbSNP
rs1418820724 1372 dbSNP
rs573099799 1384 dbSNP
rs1372563795 1386 dbSNP
rs1228900201 1395 dbSNP
rs796906657 1402 dbSNP
rs1217678678 1410 dbSNP
rs199664036 1411 dbSNP
rs187638464 1415 dbSNP
rs1259136109 1418 dbSNP
rs999165607 1420 dbSNP
rs1238101513 1421 dbSNP
rs555241321 1426 dbSNP
rs901400970 1427 dbSNP
rs1412852322 1430 dbSNP
rs1203356877 1434 dbSNP
rs1298251686 1438 dbSNP
rs977978346 1438 dbSNP
rs1444548225 1441 dbSNP
rs922408102 1445 dbSNP
rs1453509596 1447 dbSNP
rs933458080 1447 dbSNP
rs1167826595 1450 dbSNP
rs1052272906 1455 dbSNP
rs573344141 1457 dbSNP
rs1028432831 1480 dbSNP
rs1194507069 1484 dbSNP
rs1489289925 1486 dbSNP
rs543792061 1495 dbSNP
rs1259923604 1505 dbSNP
rs954233225 1506 dbSNP
rs910605171 1515 dbSNP
rs192514880 1521 dbSNP
rs1266956139 1525 dbSNP
rs542376619 1526 dbSNP
rs1016942430 1545 dbSNP
rs577636524 1566 dbSNP
rs1184459844 1570 dbSNP
rs1219936783 1578 dbSNP
rs961764579 1582 dbSNP
rs545599774 1586 dbSNP
rs929531984 1590 dbSNP
rs1328323364 1600 dbSNP
rs1391958392 1600 dbSNP
rs1173436912 1605 dbSNP
rs1394436713 1609 dbSNP
rs1402618567 1611 dbSNP
rs972737806 1620 dbSNP
rs868791870 1623 dbSNP
rs1047917986 1624 dbSNP
rs906692990 1632 dbSNP
rs1433960699 1639 dbSNP
rs773733828 1640 dbSNP
rs1326724540 1645 dbSNP
rs1003330138 1652 dbSNP
rs77301488 1663 dbSNP
rs960643430 1664 dbSNP
rs894861660 1665 dbSNP
rs1336961361 1667 dbSNP
rs1010538618 1668 dbSNP
rs194971 1677 dbSNP
rs549737173 1683 dbSNP
rs1300759540 1684 dbSNP
rs756130559 1685 dbSNP
rs1370646219 1694 dbSNP
rs116254636 1698 dbSNP
rs1394478524 1700 dbSNP
rs1167427314 1702 dbSNP
rs1466580405 1707 dbSNP
rs1029530682 1712 dbSNP
rs760147367 1715 dbSNP
rs1191919795 1717 dbSNP
rs75540721 1721 dbSNP
rs935093211 1743 dbSNP
rs1040009582 1744 dbSNP
rs1272145149 1746 dbSNP
rs1200570926 1750 dbSNP
rs910657554 1751 dbSNP
rs943406201 1751 dbSNP
rs1208008212 1760 dbSNP
rs550171033 1769 dbSNP
rs184203320 1770 dbSNP
rs901532339 1777 dbSNP
rs538714272 1781 dbSNP
rs1444748629 1784 dbSNP
rs1480179651 1790 dbSNP
rs994152866 1791 dbSNP
rs1334539393 1799 dbSNP
rs796979146 1802 dbSNP
rs1328693317 1814 dbSNP
rs1396690175 1819 dbSNP
rs551554464 1819 dbSNP
rs1172077455 1820 dbSNP
rs1199813343 1821 dbSNP
rs868299053 1822 dbSNP
rs906752418 1823 dbSNP
rs1379620612 1827 dbSNP
rs1232245519 1831 dbSNP
rs1188103068 1834 dbSNP
rs998428349 1837 dbSNP
rs1486401628 1838 dbSNP
rs544796025 1840 dbSNP
rs79494619 1852 dbSNP
rs890045589 1853 dbSNP
rs1055278405 1868 dbSNP
rs1430324421 1872 dbSNP
rs1309835983 1876 dbSNP
rs894925460 1880 dbSNP
rs1225837446 1885 dbSNP
rs533731631 1889 dbSNP
rs1323757308 1894 dbSNP
rs1279545630 1899 dbSNP
rs555278256 1906 dbSNP
rs1332478818 1907 dbSNP
rs1311123388 1909 dbSNP
rs1005638205 1913 dbSNP
rs1017078085 1920 dbSNP
rs1269977515 1932 dbSNP
rs1320464820 1935 dbSNP
rs1398756384 1936 dbSNP
rs1343390766 1939 dbSNP
rs1231232894 1940 dbSNP
rs1163840392 1942 dbSNP
rs1476132976 1943 dbSNP
rs6100667 1947 dbSNP
rs1490195693 1954 dbSNP
rs902178775 1957 dbSNP
rs999165659 1958 dbSNP
rs1488291337 1959 dbSNP
rs6092844 1960 dbSNP
rs1029996032 1964 dbSNP
rs1213193953 1970 dbSNP
rs867117485 1979 dbSNP
rs370000508 1986 dbSNP
rs955293676 1996 dbSNP
rs768153398 2005 dbSNP
rs537472898 2006 dbSNP
rs1232757887 2007 dbSNP
rs1035009992 2008 dbSNP
rs758507502 2015 dbSNP
rs1272209203 2016 dbSNP
rs776074305 2018 dbSNP
rs1192827534 2019 dbSNP
rs1389302827 2023 dbSNP
rs1323989342 2025 dbSNP
rs964814066 2028 dbSNP
rs555851668 2033 dbSNP
rs1392203827 2051 dbSNP
rs1164059605 2054 dbSNP
rs1477894664 2055 dbSNP
rs147602454 2057 dbSNP
rs1184445939 2058 dbSNP
rs761154198 2064 dbSNP
rs1474865871 2082 dbSNP
rs1383335731 2083 dbSNP
rs1194688723 2085 dbSNP
rs990729239 2091 dbSNP
rs1271847377 2093 dbSNP
rs1340458017 2096 dbSNP
rs916466418 2099 dbSNP
rs544731819 2110 dbSNP
rs1392343738 2120 dbSNP
rs1380158684 2135 dbSNP
rs1361562172 2137 dbSNP
rs967958416 2138 dbSNP
rs979236236 2139 dbSNP
rs1290607260 2151 dbSNP
rs139526694 2153 dbSNP
rs983435037 2158 dbSNP
rs1167736885 2162 dbSNP
rs935080674 2164 dbSNP
rs1425439777 2166 dbSNP
rs572711657 2167 dbSNP
rs976257475 2176 dbSNP
rs922958424 2178 dbSNP
rs1055242348 2184 dbSNP
rs931681277 2186 dbSNP
rs194972 2187 dbSNP
rs561589967 2188 dbSNP
rs946501327 2189 dbSNP
rs941631476 2194 dbSNP
rs1281382726 2200 dbSNP
rs1236765435 2202 dbSNP
rs532008685 2203 dbSNP
rs1302385854 2204 dbSNP
rs1241127840 2210 dbSNP
rs543845370 2213 dbSNP
rs1296312080 2223 dbSNP
rs994260718 2229 dbSNP
rs1050754580 2232 dbSNP
rs1175202412 2233 dbSNP
rs1035549363 2240 dbSNP
rs1432448741 2248 dbSNP
rs891060803 2259 dbSNP
rs1369672332 2262 dbSNP
rs1451047401 2268 dbSNP
rs189105355 2269 dbSNP
rs1012214198 2279 dbSNP
rs145503257 2289 dbSNP
rs1459102489 2294 dbSNP
rs11697560 2298 dbSNP
rs962532618 2302 dbSNP
rs1027746704 2304 dbSNP
rs747315620 2305 dbSNP
rs950800184 2306 dbSNP
rs1279834234 2309 dbSNP
rs757622927 2318 dbSNP
rs781596284 2320 dbSNP
rs764529966 2334 dbSNP
rs1030813040 2335 dbSNP
rs1334021871 2341 dbSNP
rs956784964 2342 dbSNP
rs975847380 2346 dbSNP
rs1227892504 2351 dbSNP
rs983873391 2361 dbSNP
rs927975802 2362 dbSNP
rs1268943487 2365 dbSNP
rs1489685727 2371 dbSNP
rs961283908 2378 dbSNP
rs1157606557 2381 dbSNP
rs1472537467 2391 dbSNP
rs1419150795 2398 dbSNP
rs922976653 2405 dbSNP
rs547616935 2406 dbSNP
rs1257095412 2409 dbSNP
rs1205930572 2410 dbSNP
rs991031194 2410 dbSNP
rs985733418 2412 dbSNP
rs746339687 2415 dbSNP
rs1215046105 2420 dbSNP
rs1335418950 2421 dbSNP
rs908913709 2422 dbSNP
rs1043845911 2423 dbSNP
rs770374994 2423 dbSNP
rs923704246 2426 dbSNP
rs566151983 2429 dbSNP
rs935077463 2446 dbSNP
rs558521863 2447 dbSNP
rs1287507464 2448 dbSNP
rs1258219645 2450 dbSNP
rs1457007229 2452 dbSNP
rs1416741068 2454 dbSNP
rs1352724748 2456 dbSNP
rs897315210 2464 dbSNP
rs1180842386 2469 dbSNP
rs930102064 2469 dbSNP
rs1056637489 2479 dbSNP
rs896547330 2485 dbSNP
rs1412161951 2490 dbSNP
rs1012350075 2507 dbSNP
rs1367961476 2509 dbSNP
rs774824408 2510 dbSNP
rs1430503624 2514 dbSNP
rs1259859215 2522 dbSNP
rs903876704 2525 dbSNP
rs148830930 2526 dbSNP
rs1358923056 2529 dbSNP
rs1466909501 2546 dbSNP
rs1275034471 2550 dbSNP
rs547667303 2553 dbSNP
rs1333568669 2556 dbSNP
rs1039643728 2561 dbSNP
rs1031369472 2569 dbSNP
rs1394992100 2572 dbSNP
rs1409217691 2574 dbSNP
rs956656039 2584 dbSNP
rs548742372 2593 dbSNP
rs976299617 2602 dbSNP
rs1030179710 2603 dbSNP
rs1372165801 2604 dbSNP
rs117237939 2605 dbSNP
rs985868442 2606 dbSNP
rs1221892059 2621 dbSNP
rs1390176231 2623 dbSNP
rs1300898350 2624 dbSNP
rs1311354018 2625 dbSNP
rs1168593226 2629 dbSNP
rs908880984 2633 dbSNP
rs1371567687 2641 dbSNP
rs1168181893 2644 dbSNP
rs1454597726 2649 dbSNP
rs1210584788 2652 dbSNP
rs1257631158 2654 dbSNP
rs963048774 2655 dbSNP
rs1191721286 2663 dbSNP
rs774155759 2666 dbSNP
rs1035472628 2668 dbSNP
rs1197040129 2678 dbSNP
rs971765254 2681 dbSNP
rs918796108 2687 dbSNP
rs1234568383 2690 dbSNP
rs537709869 2695 dbSNP
rs990748159 2699 dbSNP
rs1204430813 2707 dbSNP
rs1439100829 2708 dbSNP
rs1331070747 2713 dbSNP
rs540892630 2718 dbSNP
rs1057004620 2730 dbSNP
rs918117280 2734 dbSNP
rs1394410691 2738 dbSNP
rs1307699917 2743 dbSNP
rs571203099 2754 dbSNP
rs968248910 2767 dbSNP
rs1171559147 2770 dbSNP
rs1374629336 2771 dbSNP
rs1477535522 2773 dbSNP
rs1364325761 2796 dbSNP
rs767403114 2798 dbSNP
rs979593907 2803 dbSNP
rs924119606 2804 dbSNP
rs538611003 2809 dbSNP
rs1196794749 2815 dbSNP
rs1211222005 2817 dbSNP
rs1486462528 2818 dbSNP
rs1424065044 2819 dbSNP
rs1434070589 2822 dbSNP
rs1178699522 2828 dbSNP
rs553610963 2832 dbSNP
rs1280709165 2839 dbSNP
rs373855758 2846 dbSNP
rs942350221 2847 dbSNP
rs903845664 2865 dbSNP
rs1307520889 2866 dbSNP
rs1415430301 2867 dbSNP
rs1377506027 2871 dbSNP
rs1001238542 2873 dbSNP
rs1052466226 2890 dbSNP
rs892349819 2900 dbSNP
rs1160270651 2902 dbSNP
rs1372454427 2906 dbSNP
rs1468517056 2928 dbSNP
rs1411081966 2932 dbSNP
rs1403216617 2933 dbSNP
rs758508193 2942 dbSNP
rs1363963073 2943 dbSNP
rs1475866250 2943 dbSNP
rs1293109592 2944 dbSNP
rs1368591581 2948 dbSNP
rs1288200096 2949 dbSNP
rs768795382 2949 dbSNP
rs898431230 2950 dbSNP
rs1339872678 2951 dbSNP
rs1291737642 2952 dbSNP
rs931197442 2952 dbSNP
rs1047375664 2953 dbSNP
rs1326858878 2953 dbSNP
rs1398701719 2953 dbSNP
rs543255537 2954 dbSNP
rs68150254 2954 dbSNP
rs194973 2955 dbSNP
rs1414974844 2956 dbSNP
rs1483725704 2956 dbSNP
rs886946654 2957 dbSNP
rs1245706722 2958 dbSNP
rs1475548302 2958 dbSNP
rs1243449371 2960 dbSNP
rs1034926980 2961 dbSNP
rs1463780196 2961 dbSNP
rs1268114067 2962 dbSNP
rs1488602885 2963 dbSNP
rs576811956 2966 dbSNP
rs958934342 2967 dbSNP
rs1449289193 2969 dbSNP
rs1340364475 2971 dbSNP
rs1014906822 2973 dbSNP
rs1392594099 2978 dbSNP
rs1422759508 2979 dbSNP
rs1432655488 2992 dbSNP
rs1003081274 2993 dbSNP
rs1326539515 3000 dbSNP
rs1442978320 3003 dbSNP
rs1392136233 3005 dbSNP
rs542802075 3014 dbSNP
rs543808010 3014 dbSNP
rs375103973 3016 dbSNP
rs760495890 3023 dbSNP
rs1030105078 3028 dbSNP
rs1448122293 3031 dbSNP
rs191673932 3035 dbSNP
rs896546567 3037 dbSNP
rs765416130 3045 dbSNP
rs540602833 3053 dbSNP
rs1012221554 3054 dbSNP
rs559698293 3061 dbSNP
rs1308097682 3062 dbSNP
rs1275458009 3065 dbSNP
rs6071038 3077 dbSNP
rs968299509 3082 dbSNP
rs1341252617 3085 dbSNP
rs1362728769 3091 dbSNP
rs1434128297 3103 dbSNP
rs979646107 3110 dbSNP
rs1031624990 3115 dbSNP
rs1292811688 3121 dbSNP
rs766369215 3123 dbSNP
rs987338037 3124 dbSNP
rs541394832 3127 dbSNP
rs912325915 3129 dbSNP
rs1226049296 3136 dbSNP
rs1395260460 3138 dbSNP
rs1288517266 3140 dbSNP
rs1455807703 3142 dbSNP
rs1423705093 3146 dbSNP
rs942401080 3148 dbSNP
rs1481041290 3150 dbSNP
rs1321851306 3160 dbSNP
rs963102469 3164 dbSNP
rs1482868149 3166 dbSNP
rs1223276084 3170 dbSNP
rs1245850740 3171 dbSNP
rs1310202800 3176 dbSNP
rs559613566 3176 dbSNP
rs34392887 3180 dbSNP
rs975096916 3181 dbSNP
rs752669291 3183 dbSNP
rs758518091 3189 dbSNP
rs1375685446 3199 dbSNP
rs1314273476 3201 dbSNP
rs1467956823 3202 dbSNP
rs528351820 3203 dbSNP
rs764233434 3210 dbSNP
rs6071039 3219 dbSNP
rs1176033523 3220 dbSNP
rs1420225240 3241 dbSNP
rs1410746311 3245 dbSNP
rs1180109442 3246 dbSNP
rs951703496 3265 dbSNP
rs1472271407 3269 dbSNP
rs1258554317 3272 dbSNP
rs551603410 3276 dbSNP
rs1181849481 3278 dbSNP
rs1414595546 3281 dbSNP
rs1482176274 3283 dbSNP
rs1255173808 3286 dbSNP
rs938542972 3287 dbSNP
rs530100611 3288 dbSNP
rs1157137703 3290 dbSNP
rs918084864 3295 dbSNP
rs751768245 3297 dbSNP
rs548778700 3304 dbSNP
rs757524972 3305 dbSNP
rs903861245 3312 dbSNP
rs925317443 3314 dbSNP
rs1391484349 3317 dbSNP
rs1454567819 3317 dbSNP
rs185009645 3335 dbSNP
rs1283569637 3344 dbSNP
rs6071040 3345 dbSNP
rs531402115 3348 dbSNP
rs549850065 3349 dbSNP
rs781506710 3357 dbSNP
rs1189937791 3359 dbSNP
rs1255686955 3363 dbSNP
rs1422308366 3363 dbSNP
rs571494760 3372 dbSNP
rs957147051 3382 dbSNP
rs1486692537 3384 dbSNP
rs1246180492 3390 dbSNP
rs189121152 3396 dbSNP
rs1265790213 3400 dbSNP
rs1328053797 3401 dbSNP
rs1008412174 3402 dbSNP
rs1274525586 3402 dbSNP
rs1270399759 3404 dbSNP
rs1019773024 3411 dbSNP
rs1320745623 3417 dbSNP
rs1295770671 3418 dbSNP
rs1383183012 3422 dbSNP
rs553692264 3426 dbSNP
rs1367786997 3431 dbSNP
rs1441096772 3448 dbSNP
rs1434983689 3464 dbSNP
rs1209992023 3467 dbSNP
rs1165105838 3471 dbSNP
rs763022941 3473 dbSNP
rs1456400462 3477 dbSNP
rs892494288 3486 dbSNP
rs565787231 3495 dbSNP
rs1368131749 3519 dbSNP
rs1238588056 3542 dbSNP
rs368781690 3544 dbSNP
rs1473788552 3545 dbSNP
rs963814734 3548 dbSNP
rs1187910077 3555 dbSNP
rs145237244 3559 dbSNP
rs1254737815 3560 dbSNP
rs1411419868 3565 dbSNP
rs1207561485 3575 dbSNP
rs746277220 3585 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' uuGAGACUCAAACAGAAAGGGu 5'
            :||| |  |  |||||||| 
Target 5' ccUUCUUACAU--UCUUUCCCu 3'
 		3 - 22
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000358293.3 | 3UTR | UUCCUUCUUACAUUCUUUCCCUCUCACACCAUCCUACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
161 hsa-miR-6733-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT075325 SF3B3 splicing factor 3b subunit 3 2 4
MIRT082764 EPN1 epsin 1 2 4
MIRT119868 NRBP1 nuclear receptor binding protein 1 2 2
MIRT124577 PRRC2B proline rich coiled-coil 2B 2 2
MIRT126718 WAC WW domain containing adaptor with coiled-coil 2 2
MIRT128925 KMT2A lysine methyltransferase 2A 2 2
MIRT135191 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 2
MIRT145630 LASP1 LIM and SH3 protein 1 2 2
MIRT175518 ZBTB33 zinc finger and BTB domain containing 33 2 4
MIRT188406 ATXN7L3B ataxin 7 like 3B 2 2
MIRT192486 KNSTRN kinetochore localized astrin/SPAG5 binding protein 2 2
MIRT208383 SLC25A36 solute carrier family 25 member 36 2 2
MIRT216690 F2R coagulation factor II thrombin receptor 2 2
MIRT235839 FAM217B family with sequence similarity 217 member B 2 2
MIRT257000 RGMB repulsive guidance molecule family member b 2 2
MIRT266594 POGZ pogo transposable element derived with ZNF domain 2 2
MIRT273614 SP1 Sp1 transcription factor 2 2
MIRT276567 AKAP11 A-kinase anchoring protein 11 2 2
MIRT285544 CDT1 chromatin licensing and DNA replication factor 1 2 2
MIRT291540 LRRC8B leucine rich repeat containing 8 VRAC subunit B 2 2
MIRT317159 E2F3 E2F transcription factor 3 2 4
MIRT340688 THRAP3 thyroid hormone receptor associated protein 3 2 2
MIRT366934 OGT O-linked N-acetylglucosamine (GlcNAc) transferase 2 2
MIRT376193 AP1M1 adaptor related protein complex 1 mu 1 subunit 2 2
MIRT441983 TSTD2 thiosulfate sulfurtransferase like domain containing 2 2 2
MIRT442059 POU3F2 POU class 3 homeobox 2 2 6
MIRT443190 PDHA1 pyruvate dehydrogenase E1 alpha 1 subunit 2 2
MIRT445133 CMTM4 CKLF like MARVEL transmembrane domain containing 4 2 2
MIRT445881 WBP1L WW domain binding protein 1 like 2 2
MIRT449359 DPP6 dipeptidyl peptidase like 6 2 2
MIRT451399 FARSA phenylalanyl-tRNA synthetase alpha subunit 2 2
MIRT451802 CDCA3 cell division cycle associated 3 2 4
MIRT452295 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 2
MIRT452494 HMGXB3 HMG-box containing 3 2 2
MIRT453354 ZNF3 zinc finger protein 3 2 2
MIRT453375 CACNA2D2 calcium voltage-gated channel auxiliary subunit alpha2delta 2 2 2
MIRT453719 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 2 2
MIRT453839 SDK1 sidekick cell adhesion molecule 1 2 2
MIRT454009 ALKBH5 alkB homolog 5, RNA demethylase 2 2
MIRT454371 PIGS phosphatidylinositol glycan anchor biosynthesis class S 2 2
MIRT454729 ARSK arylsulfatase family member K 2 2
MIRT455227 KIAA2013 KIAA2013 2 2
MIRT455866 SLC35C2 solute carrier family 35 member C2 2 2
MIRT456386 KLHL12 kelch like family member 12 2 2
MIRT457017 ACADSB acyl-CoA dehydrogenase, short/branched chain 2 2
MIRT457048 NEGR1 neuronal growth regulator 1 2 2
MIRT457402 BACE2 beta-site APP-cleaving enzyme 2 2 2
MIRT457808 KLHL25 kelch like family member 25 2 2
MIRT458361 C3orf80 chromosome 3 open reading frame 80 2 2
MIRT458678 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT459629 GABARAP GABA type A receptor-associated protein 2 2
MIRT460955 MUL1 mitochondrial E3 ubiquitin protein ligase 1 2 2
MIRT462241 PRSS16 protease, serine 16 2 2
MIRT462472 FIZ1 FLT3 interacting zinc finger 1 2 2
MIRT462572 STS steroid sulfatase 2 2
MIRT462931 ZNF827 zinc finger protein 827 2 2
MIRT463442 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT464129 VPS35 VPS35, retromer complex component 2 2
MIRT464688 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 2
MIRT465653 TNPO2 transportin 2 2 2
MIRT465951 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 2
MIRT466032 TMEM189 transmembrane protein 189 2 2
MIRT466577 TBC1D2B TBC1 domain family member 2B 2 2
MIRT467506 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 2
MIRT467786 SLC2A14 solute carrier family 2 member 14 2 2
MIRT468104 SH3TC2 SH3 domain and tetratricopeptide repeats 2 2 2
MIRT468292 SFT2D2 SFT2 domain containing 2 2 2
MIRT469004 RNF41 ring finger protein 41 2 2
MIRT469753 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT473205 MINK1 misshapen like kinase 1 2 4
MIRT473314 MEX3A mex-3 RNA binding family member A 2 2
MIRT473549 MAVS mitochondrial antiviral signaling protein 2 2
MIRT474269 LATS2 large tumor suppressor kinase 2 2 2
MIRT475111 IPPK inositol-pentakisphosphate 2-kinase 2 2
MIRT475436 HYOU1 hypoxia up-regulated 1 2 2
MIRT475751 HDLBP high density lipoprotein binding protein 2 2
MIRT475972 GTPBP2 GTP binding protein 2 2 2
MIRT476480 GATAD2A GATA zinc finger domain containing 2A 2 2
MIRT476595 G3BP1 G3BP stress granule assembly factor 1 2 2
MIRT476684 FURIN furin, paired basic amino acid cleaving enzyme 2 2
MIRT477261 ERGIC2 ERGIC and golgi 2 2 2
MIRT477647 EFNA1 ephrin A1 2 2
MIRT477790 E2F2 E2F transcription factor 2 2 2
MIRT477871 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT478012 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT479558 CDC5L cell division cycle 5 like 2 4
MIRT480420 C17orf85 nuclear cap binding subunit 3 2 2
MIRT480642 BSCL2 BSCL2, seipin lipid droplet biogenesis associated 2 2
MIRT480778 BMP2 bone morphogenetic protein 2 2 2
MIRT481554 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT481689 AR androgen receptor 2 2
MIRT481836 AP1S1 adaptor related protein complex 1 sigma 1 subunit 2 2
MIRT483138 FOXC1 forkhead box C1 2 2
MIRT483919 SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 2 2
MIRT484202 SUMO1 small ubiquitin-like modifier 1 2 2
MIRT484433 RAB7A RAB7A, member RAS oncogene family 2 4
MIRT485544 GP5 glycoprotein V platelet 2 2
MIRT486558 SLC38A4 solute carrier family 38 member 4 2 2
MIRT486727 MGAT5B mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B 2 4
MIRT490490 GLRA3 glycine receptor alpha 3 2 2
MIRT490682 SSTR1 somatostatin receptor 1 2 2
MIRT490792 PSMD3 proteasome 26S subunit, non-ATPase 3 2 2
MIRT491060 ACVR1B activin A receptor type 1B 2 4
MIRT492614 PNRC1 proline rich nuclear receptor coactivator 1 2 2
MIRT492768 PDGFB platelet derived growth factor subunit B 2 2
MIRT493988 EHD1 EH domain containing 1 2 2
MIRT494510 BDNF-AS BDNF antisense RNA 2 2
MIRT494755 AP3M2 adaptor related protein complex 3 mu 2 subunit 2 2
MIRT499802 LONRF3 LON peptidase N-terminal domain and ring finger 3 2 2
MIRT501336 RNF44 ring finger protein 44 2 4
MIRT509490 CENPA centromere protein A 2 2
MIRT509643 ZNF354B zinc finger protein 354B 2 10
MIRT510147 PDGFRA platelet derived growth factor receptor alpha 2 4
MIRT510567 UNG uracil DNA glycosylase 2 6
MIRT525087 FRK fyn related Src family tyrosine kinase 2 2
MIRT528452 NXT2 nuclear transport factor 2 like export factor 2 2 4
MIRT531970 C12orf49 chromosome 12 open reading frame 49 2 2
MIRT532084 RTTN rotatin 2 2
MIRT532756 LDHD lactate dehydrogenase D 2 2
MIRT535072 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 2
MIRT535637 NPEPPS aminopeptidase puromycin sensitive 2 2
MIRT545410 EIF4A3 eukaryotic translation initiation factor 4A3 2 4
MIRT545911 ZFP91 ZFP91 zinc finger protein 2 4
MIRT548007 GRB2 growth factor receptor bound protein 2 2 4
MIRT548545 DR1 down-regulator of transcription 1 2 2
MIRT550075 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT553730 TBRG1 transforming growth factor beta regulator 1 2 2
MIRT557569 GNPTAB N-acetylglucosamine-1-phosphate transferase alpha and beta subunits 2 2
MIRT558025 EXT1 exostosin glycosyltransferase 1 2 2
MIRT558139 ENC1 ectodermal-neural cortex 1 2 2
MIRT560173 COA1 cytochrome c oxidase assembly factor 1 homolog 2 2
MIRT561700 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 2
MIRT565101 UBE3C ubiquitin protein ligase E3C 2 2
MIRT565739 SESN3 sestrin 3 2 2
MIRT566669 NACC2 NACC family member 2 2 2
MIRT567040 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT569627 ZNF746 zinc finger protein 746 2 2
MIRT570530 RPH3A rabphilin 3A 2 2
MIRT570939 CPE carboxypeptidase E 2 2
MIRT574774 FGF2 fibroblast growth factor 2 2 2
MIRT620120 LACC1 laccase domain containing 1 2 2
MIRT624338 CISD1 CDGSH iron sulfur domain 1 2 2
MIRT625434 RMDN1 regulator of microtubule dynamics 1 2 2
MIRT640528 TET3 tet methylcytosine dioxygenase 3 2 4
MIRT646916 TRIM14 tripartite motif containing 14 2 2
MIRT656298 METTL1 methyltransferase like 1 2 2
MIRT660192 BMPR1A bone morphogenetic protein receptor type 1A 2 2
MIRT661360 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT667769 KCTD11 potassium channel tetramerization domain containing 11 2 2
MIRT683187 TAF1D TATA-box binding protein associated factor, RNA polymerase I subunit D 2 2
MIRT685843 ANGEL1 angel homolog 1 2 2
MIRT688553 DCAF16 DDB1 and CUL4 associated factor 16 2 2
MIRT689424 CYB561 cytochrome b561 2 2
MIRT698505 TGFBR1 transforming growth factor beta receptor 1 2 2
MIRT701232 OCRL OCRL, inositol polyphosphate-5-phosphatase 2 2
MIRT702506 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT706488 SEPT6 septin 6 2 2
MIRT713774 ZNF460 zinc finger protein 460 2 2
MIRT716991 ARL6IP4 ADP ribosylation factor like GTPase 6 interacting protein 4 2 2
MIRT722644 MPEG1 macrophage expressed 1 2 2
MIRT725254 PARVB parvin beta 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-6733 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-mir-6733 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-6733-5p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-6733-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-6733-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-6733-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)

Error report submission