pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ACTB   
Synonyms BRWS1, PS1TP5BP1
Description actin beta
Transcript NM_001101   
Expression
Putative miRNA Targets on ACTB
3'UTR of ACTB
(miRNA target sites are highlighted)
>ACTB|NM_001101|3'UTR
   1 GCGGACTATGACTTAGTTGCGTTACACCCTTTCTTGACAAAACCTAACTTGCGCAGAAAACAAGATGAGATTGGCATGGC
  81 TTTATTTGTTTTTTTTGTTTTGTTTTGGTTTTTTTTTTTTTTTTGGCTTGACTCAGGATTTAAAAACTGGAACGGTGAAG
 161 GTGACAGCAGTCGGTTGGAGCGAGCATCCCCCAAAGTTCACAATGTGGCCGAGGACTTTGATTGCACATTGTTGTTTTTT
 241 TAATAGTCATTCCAAATATGAGATGCGTTGTTACAGGAAGTCCCTTGCCATCCTAAAAGCCACCCCACTTCTCTCTAAGG
 321 AGAATGGCCCAGTCCTCTCCCAAGTCCACACAGGGGAGGTGATAGCATTGCTTTCGTGTAAATTATGTAATGCAAAATTT
 401 TTTTAATCTTCGCCTTAATACTTTTTTATTTTGTTTTATTTTGAATGATGAGCCTTCGTGCCCCCCCTTCCCCCTTTTTT
 481 GTCCCCCAACTTGAGATGTATGAAGGCTTTTGGTCTCCCTGGGAGTGGGTGGAGGCAGCCAGGGCTTACCTGTACACTGA
 561 CTTGAGACCAGTTGAATAAAAGTGCACACCTTAAAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aggaccUACG-UUUAAAAu 5'
                |||| ||||||| 
Target 5' tatgtaATGCAAAATTTTt 3'
384 - 402 152.00 -5.20
2
miRNA  3' agGACCU-ACGUUUAAAau 5'
            || || |  ::||||  
Target 5' ggCTTGACTCAGGATTTaa 3'
125 - 143 96.00 -5.40
3
miRNA  3' aggaccUACGUUUaaaau 5'
                :||:|||     
Target 5' gctttcGTGTAAAttatg 3'
370 - 387 72.00 -6.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
987424 53 ClinVar
1185839 260 ClinVar
COSN30497777 3 COSMIC
COSN30155279 10 COSMIC
COSN26964933 20 COSMIC
COSN30116509 25 COSMIC
COSN17076391 33 COSMIC
COSN30168920 36 COSMIC
COSN26964932 52 COSMIC
COSN8029202 56 COSMIC
COSN31611836 79 COSMIC
COSN20091509 97 COSMIC
COSN19613139 102 COSMIC
COSN30118120 103 COSMIC
COSN28668341 107 COSMIC
COSN28634376 108 COSMIC
COSN30477025 109 COSMIC
COSN31596208 126 COSMIC
COSN30181322 130 COSMIC
COSN30521459 130 COSMIC
COSN30515650 136 COSMIC
COSN32072241 138 COSMIC
COSN26645243 149 COSMIC
COSN26506839 153 COSMIC
COSN31564331 154 COSMIC
COSN30147903 157 COSMIC
COSN30545321 168 COSMIC
COSN31578487 172 COSMIC
COSN1351348 175 COSMIC
COSN30169044 178 COSMIC
COSN14295355 181 COSMIC
COSN16131555 182 COSMIC
COSN30490357 189 COSMIC
COSN31532685 210 COSMIC
COSN23017038 229 COSMIC
COSN26645824 234 COSMIC
COSN32057770 260 COSMIC
COSN23017037 267 COSMIC
COSN19487471 270 COSMIC
COSN32057769 280 COSMIC
COSN26641503 284 COSMIC
COSN26578067 306 COSMIC
COSN26668784 375 COSMIC
COSN26577770 376 COSMIC
COSN26668503 398 COSMIC
COSN26668214 399 COSMIC
COSN31575879 399 COSMIC
COSN26633479 412 COSMIC
COSN26585290 461 COSMIC
COSN26643539 475 COSMIC
COSN26676283 481 COSMIC
COSN8516794 493 COSMIC
COSN16129816 495 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs774719514 1 dbSNP
rs200011987 2 dbSNP
rs769620514 3 dbSNP
rs1390956841 6 dbSNP
rs1164221670 7 dbSNP
rs759456782 8 dbSNP
rs1214743779 11 dbSNP
rs776416632 12 dbSNP
rs770822774 17 dbSNP
rs546596340 18 dbSNP
rs1249982839 19 dbSNP
rs777620729 20 dbSNP
rs771806128 21 dbSNP
rs747696590 24 dbSNP
rs768197623 24 dbSNP
rs528042634 25 dbSNP
rs775082663 27 dbSNP
rs1201609614 28 dbSNP
rs370911789 29 dbSNP
rs754429468 32 dbSNP
rs780422687 35 dbSNP
rs1229072545 36 dbSNP
rs1367192300 37 dbSNP
rs756549406 38 dbSNP
rs750735339 42 dbSNP
rs748905451 43 dbSNP
rs767758078 44 dbSNP
rs761955678 46 dbSNP
rs1389039238 47 dbSNP
rs1163260391 48 dbSNP
rs751647886 49 dbSNP
rs1392514270 50 dbSNP
rs1323353767 51 dbSNP
rs1329812538 52 dbSNP
rs560972961 53 dbSNP
rs1304184912 54 dbSNP
rs1376263999 55 dbSNP
rs1238152783 56 dbSNP
rs1449805065 57 dbSNP
rs1252496544 60 dbSNP
rs1351737318 61 dbSNP
rs1208988844 62 dbSNP
rs1195943298 64 dbSNP
rs1287508131 66 dbSNP
rs186180658 69 dbSNP
rs147293109 72 dbSNP
rs1237563102 84 dbSNP
rs1437260482 86 dbSNP
rs1065094 87 dbSNP
rs1224931127 88 dbSNP
rs1363984622 88 dbSNP
rs1472277297 89 dbSNP
rs1323750711 90 dbSNP
rs1283072370 91 dbSNP
rs1463417131 92 dbSNP
rs917362860 93 dbSNP
rs563132910 95 dbSNP
rs1244361677 97 dbSNP
rs1309294137 97 dbSNP
rs1400289944 97 dbSNP
rs1444630341 97 dbSNP
rs1491056445 97 dbSNP
rs372205322 97 dbSNP
rs574890214 97 dbSNP
rs879017430 97 dbSNP
rs1257318833 98 dbSNP
rs13447410 100 dbSNP
rs1250637610 101 dbSNP
rs17136418 102 dbSNP
rs544447349 103 dbSNP
rs1419667621 106 dbSNP
rs1423500579 108 dbSNP
rs1476385178 108 dbSNP
rs11546928 109 dbSNP
rs1390952187 109 dbSNP
rs1299915880 110 dbSNP
rs1397306623 111 dbSNP
rs1395592443 112 dbSNP
rs1398178477 112 dbSNP
rs1338991392 113 dbSNP
rs577490709 116 dbSNP
rs1428784991 118 dbSNP
rs1315931997 122 dbSNP
rs950871994 124 dbSNP
rs1198291101 125 dbSNP
rs1251319696 125 dbSNP
rs1421339928 125 dbSNP
rs370106412 125 dbSNP
rs879140023 125 dbSNP
rs920724265 125 dbSNP
rs1476915649 126 dbSNP
rs1173157860 127 dbSNP
rs1427198023 127 dbSNP
rs879167389 130 dbSNP
rs1377460785 142 dbSNP
rs1415648094 150 dbSNP
rs1182403729 153 dbSNP
rs1456959390 154 dbSNP
rs887488041 156 dbSNP
rs1204961617 162 dbSNP
rs1461503730 164 dbSNP
rs1296196209 165 dbSNP
rs1330503473 167 dbSNP
rs1277399124 172 dbSNP
rs1281885085 173 dbSNP
rs1348096429 176 dbSNP
rs1215463616 179 dbSNP
rs1214000017 180 dbSNP
rs1285674310 182 dbSNP
rs1485089976 185 dbSNP
rs1188706944 186 dbSNP
rs1199171727 191 dbSNP
rs1263003433 193 dbSNP
rs1433144206 199 dbSNP
rs11546911 201 dbSNP
rs558941094 202 dbSNP
rs973656749 203 dbSNP
rs13447411 210 dbSNP
rs1343718957 211 dbSNP
rs1317283627 214 dbSNP
rs1289275268 215 dbSNP
rs76543773 218 dbSNP
rs760087387 219 dbSNP
rs1366772845 220 dbSNP
rs11546941 223 dbSNP
rs1438654612 225 dbSNP
rs1018267990 226 dbSNP
rs1238866353 230 dbSNP
rs11546919 232 dbSNP
rs1306601475 233 dbSNP
rs11546918 235 dbSNP
rs1332419197 237 dbSNP
rs770392180 237 dbSNP
rs1212367802 242 dbSNP
rs1412593854 242 dbSNP
rs1488406240 242 dbSNP
rs372590587 242 dbSNP
rs1454756008 244 dbSNP
rs1386825162 246 dbSNP
rs1406027299 248 dbSNP
rs1421144321 250 dbSNP
rs1158885555 253 dbSNP
rs11546890 257 dbSNP
rs1008593723 258 dbSNP
rs11546906 260 dbSNP
rs1159504972 260 dbSNP
rs1378342106 262 dbSNP
rs11546935 263 dbSNP
rs1459749757 266 dbSNP
rs7612 267 dbSNP
rs11546927 271 dbSNP
rs1395191241 274 dbSNP
rs182601851 274 dbSNP
rs1295975440 275 dbSNP
rs1375000450 275 dbSNP
rs11546905 280 dbSNP
rs1308065009 281 dbSNP
rs1334603322 282 dbSNP
rs773005303 288 dbSNP
rs1207559049 289 dbSNP
rs1053587255 292 dbSNP
rs1469339893 301 dbSNP
rs1285432459 304 dbSNP
rs1481708901 306 dbSNP
rs1216285434 307 dbSNP
rs1413430605 309 dbSNP
rs1065729 315 dbSNP
rs1166878564 317 dbSNP
rs1352152786 317 dbSNP
rs531156306 317 dbSNP
rs1294581020 319 dbSNP
rs1418433502 320 dbSNP
rs1465059281 322 dbSNP
rs1326212173 324 dbSNP
rs1246877167 329 dbSNP
rs796517564 336 dbSNP
rs1282679917 337 dbSNP
rs1442383329 339 dbSNP
rs1433190076 340 dbSNP
rs1353236339 341 dbSNP
rs1413294962 345 dbSNP
rs538427751 346 dbSNP
rs1336045127 348 dbSNP
rs1214514648 349 dbSNP
rs778199310 352 dbSNP
rs1309330127 354 dbSNP
rs11546891 356 dbSNP
rs138738998 359 dbSNP
rs546534519 362 dbSNP
rs528382886 365 dbSNP
rs550708657 366 dbSNP
rs11546923 369 dbSNP
rs1257978054 371 dbSNP
rs1166080296 375 dbSNP
rs1477415007 375 dbSNP
rs780886103 376 dbSNP
rs3210647 382 dbSNP
rs548986521 386 dbSNP
rs1174797620 387 dbSNP
rs1373201598 391 dbSNP
rs1436227118 392 dbSNP
rs1315110265 394 dbSNP
rs530641101 395 dbSNP
rs1424805862 397 dbSNP
rs1364746361 400 dbSNP
rs563211915 404 dbSNP
rs1213294634 405 dbSNP
rs1345921149 405 dbSNP
rs1179569553 408 dbSNP
rs1281392831 411 dbSNP
rs544796945 412 dbSNP
rs1243748726 413 dbSNP
rs1190076386 415 dbSNP
rs1475721434 415 dbSNP
rs1392741997 417 dbSNP
rs11266786 419 dbSNP
rs1271861507 420 dbSNP
rs1193478938 421 dbSNP
rs11546889 422 dbSNP
rs1400470192 424 dbSNP
rs758823620 426 dbSNP
rs1223837262 428 dbSNP
rs565468236 432 dbSNP
rs1302673020 433 dbSNP
rs3206243 433 dbSNP
rs779086394 437 dbSNP
rs1350285937 438 dbSNP
rs1203119170 439 dbSNP
rs1286117977 442 dbSNP
rs548056688 443 dbSNP
rs1340326828 444 dbSNP
rs1251137521 446 dbSNP
rs1455185502 450 dbSNP
rs3210032 453 dbSNP
rs1399234893 454 dbSNP
rs1338127216 457 dbSNP
rs1410626253 458 dbSNP
rs1401716393 460 dbSNP
rs1325804677 461 dbSNP
rs1304922621 462 dbSNP
rs1443152937 465 dbSNP
rs1405518168 466 dbSNP
rs1335349700 467 dbSNP
rs567790396 468 dbSNP
rs772866040 468 dbSNP
rs1162109016 470 dbSNP
rs1232516423 472 dbSNP
rs3210108 474 dbSNP
rs1271173581 475 dbSNP
rs1469799895 478 dbSNP
rs562224012 481 dbSNP
rs1419858229 483 dbSNP
rs1169487830 484 dbSNP
rs1477069512 487 dbSNP
rs1364070285 489 dbSNP
rs1473109039 493 dbSNP
rs1164704706 495 dbSNP
rs764321317 498 dbSNP
rs1463498459 499 dbSNP
rs756378543 500 dbSNP
rs13447412 505 dbSNP
rs1200531020 506 dbSNP
rs11546892 508 dbSNP
rs11546924 511 dbSNP
rs1336630061 515 dbSNP
rs1291233650 519 dbSNP
rs1488446442 521 dbSNP
rs1233828277 522 dbSNP
rs781397464 530 dbSNP
rs1336860683 538 dbSNP
rs1245419031 541 dbSNP
rs1250750285 547 dbSNP
rs368246302 548 dbSNP
rs1187624251 550 dbSNP
rs1206800541 553 dbSNP
rs1476437418 554 dbSNP
rs1188854298 558 dbSNP
rs1438455019 568 dbSNP
rs1373068575 571 dbSNP
rs1169767986 574 dbSNP
rs1257725315 576 dbSNP
rs1434350658 578 dbSNP
rs1310776599 579 dbSNP
rs1217001391 581 dbSNP
rs1415229667 582 dbSNP
rs1294738995 583 dbSNP
rs1324656054 584 dbSNP
rs1228916854 587 dbSNP
rs920676756 601 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_001101 | 3UTR | CGAGCAUCCCCCAAAGUUCACAAUGUGGCCGAGGACUUUGAUUGCACAUUGUUGUUUUUUUAAUAGUCAUUCCAAAUAUGAGAUGCGUUGUUACAGGAAGUCCCUUGCCAUCCUAAAAGCCACCCCACUUCUCUCUAAGGAGAAUGGCCCAGUCCUCUCCCAAGUCCACACAGGGGAGGUGAUAGCAUUGCUUUCGUGUAAAUUAUGUAAUGCAAAAUUUUUUUAAUCUUCGCCUUAAUACUUUUUUAUUUUGUUUUAUUUUGAAUGAUGAGCCUUCGUGCCCCCCCUUCCCCCUUUUUUGUCCCCCAACUUGAGAUGUAUGAAGGCUUUUGGUCUCCCUGGGAGUGGGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_001101 | 3UTR | AGUUCACAAUGUGGCCGAGGACUUUGAUUGCACAUUGUUGUUUUUUUAAUAGUCAUUCCAAAUAUGAGAUGCGUUGUUACAGGAAGUCCCUUGCCAUCCUAAAAGCCACCCCACUUCUCUCUAAGGAGAAUGGCCCAGUCCUCUCCCAAGUCCACACAGGGGAGGUGAUAGCAUUGCUUUCGUGUAAAUUAUGUAAUGCAAAAUUUUUUUAAUCUUCGCCUUAAUACUUUUUUAUUUUGUUUUAUUUUGAAUGAUGAGCCUUCGUGCCCCCCCUUCCCCCUUUUUUGUCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_001101 | 3UTR | AGGACUUUGAUUGCACAUUGUUGUUUUUUUAAUAGUCAUUCCAAAUAUGAGAUGCGUUGUUACAGGAAGUCCCUUGCCAUCCUAAAAGCCACCCCACUUCUCUCUAAGGAGAAUGGCCCAGUCCUCUCCCAAGUCCACACAGGGGAGGUGAUAGCAUUGCUUUCGUGUAAAUUAUGUAAUGCAAAAUUUUUUUAAUCUUCGCCUUAAUACUUUUUUAUUUUGUUUUAUUUUGAAUGAUGAGCCUUCGUGCCCCCCCUUCCCCCUUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_001101 | 3UTR | ACAAUGUGGCCGAGGACUUUGAUUGCACAUUGUUGUUUUUUUAAUAGUCAUUCCAAAUAUGAGAUGCGUUGUUACAGGAAGUCCCUUGCCAUCCUAAAAGCCACCCCACUUCUCUCUAAGGAGAAUGGCCCAGUCCUCUCCCAAGUCCACACAGGGGAGGUGAUAGCAUUGCUUUCGUGUAAAUUAUGUAAUGCAAAAUUUUUUUAAUCUUCGCCUUAAUACUUUUUUAUUUUGUUUUAUUUUGAAUGAUGAGCCUUCGUGCCCCCCCUUCCCCCUUUUUUGUCCCCCAACUUGAGAUGUAUGAAGGCUUUUGGUCUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_001101 | 3UTR | AAAUUUUUUUAAUCUUCGCCUUAAUACUUUUUUAUUUUGUUUUAUUUUGAAUGAUGAGCCUUCGUGCCCCCCCUUCCCCCUUUUUUGUCCCCCAACUUGAGAUGUAUGAAGGCUUUUGGUCUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000331789.5 | 3UTR | CAAAAUUUUUUUAAUCUUCGCCUUAAUACUUUUUUAUUUUGUUUUAUUUUGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

Error report submission