miRTarBase - #MIRT240368


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pre-miRNA Information
pre-miRNA hsa-mir-3150b   
Genomic Coordinates chr8: 95072911 - 95072996
Description Homo sapiens miR-3150b stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3150b-3p
Sequence 53| UGAGGAGAUCGUCGAGGUUGG |73
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 15 8 - 95072930 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1256195314 2 dbSNP
rs1484412577 6 dbSNP
rs1412064940 14 dbSNP
rs1185404105 16 dbSNP
rs886360149 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol RAB2A   
Synonyms LHX, RAB2
Description RAB2A, member RAS oncogene family
Transcript NM_002865   
Expression
Putative miRNA Targets on RAB2A
3'UTR of RAB2A
(miRNA target sites are highlighted)		 
>RAB2A|NM_002865|3'UTR
   1 GTCTGTTTTTACTGTCTAGCTGCCCAACGGGGCCTACTCACTTATTCTTTCACCCCCTCTCCTCCTGCTCAGCTGAGACA
  81 TGAAACTATTTGAAATGGCTTTATGTCACAGAAGACTTTAATCCGTCAAATTCTTGTATAACTTTGAATAAATGGTTAAT
 161 GTTCACTTAAAAGACAGATTTTGGAGATTGTATTCATATCTATTTGCATTTGATTTCTAGGTCAATTGATGTGATTATTT
 241 TTGTTAAATGTTGTCTTGTGCCCTTAACTACGAACTGAATTGTATTAAACACTACAAAGTCATCTTGAGTATTTTAAATC
 321 GGTTTGTGTAGTTAGGTTTCCCAACATCTGTGGTTACCTAATGTTTAATATTATAGAACTGTCCTCAGAAACTTTGTCAA
 401 TTTTCACGGCTATAAGGAAACAGAAGGACTCTTTTAATTCTGTATTTATCATTTACTTTCTGTATATATAGTTTAATAAC
 481 CTGCTTGGGTGTAATTTGCCAAGCTTGAATTCTTTAATGCATTTGCATAAATTCTATACTGTTTAGAGCTTAAAGCTACA
 561 GAAGCATTGTTAGGAATTGCTTGGACACTGAATTTTAAACTTTTTGACATTGTTAACAAGCATGTTCATCTTTTCTTGTC
 641 ACTAGTCCAAGAAAAATATGCTTAATGTATATTACAAAGGCTTTGTATATGTTAACCTGTTTTAATGCCAAAAGTTTGCT
 721 TTGTCCACAATTTCCTTAAGACCTCTTCAGAAAGGGATTTGTTTGCCTTAATGAATACTGTTGGGAAAAAACACAGTATA
 801 ATGAGTGAAAAGGGCAGAAGCAAGAAATTTCTACATCTTAGCGACTCCAAGAAGAATGAGTATCCACATTTAGATGGCAC
 881 ATTATGAGGACTTTAATCTTTCCTTAAACACAATAATGTTTTCTTTTTTCTTTTATTCACATGATTTCTAAGTATATTTT
 961 TCATGCAGGACAGTTTTTCAACCTTGATGTACAGTGACTGTGTAAAATTTTTCTTTCAGTGGCAACCTCTATAATCTTTA
1041 AAATATGGTGAGCATCTTGTCTGTTTTGAAGGGGATATGACAATAAATCTATCAGATGGAAAATCCTGTTACAAAGTAGA
1121 AAAGCTTTAGTAATTTACTCAGTGTGGTGGTTTTATCCTTTTTTTCTTTTTCTCCCTTGGTCTATAATGAAATTGTTACA
1201 GCAGTGCAAAATAAAATCCTATGTATAAAAGTGTTCTTTTTTTTTATTATGACCACCTCTTTTTTAATGTATTTTTAGTC
1281 CACTTACAGCTTTTACATGGGTTTAAGCATGTTTTTTAAAAGGGTCAGAATGGTTAACACTCAACCCTTTTTAAAAATTT
1361 TGCTAAAATGCGACAAATCTCACCATACTGAAATTATTTTTGTTGATGGTGTAAGCAGTGTAAGCAAGTGTTTTCTCCTG
1441 AACTAGCACAAAAGCACTTATGCCTGAAAGAAAGCATAAAGAAGTTCTAACTCTGAAACTAACTACTTTCATTTCGCTCA
1521 TGGCCTTCAACTTTCTACAGGTCTTCCCTGAAGATTCAGCAGTACTCTCTCAAAGGTTTGACAGTACTCTTGTGGGAAAT
1601 CACCAAATGCTGTCATAGTTTTGTTTTAACTGTCTCCTTGAGGGCAGAGGGAAGGGTGAGAGAAAATCTGTTTTCATGGG
1681 TATTTGTAGTACAGCCTTTTTTTCTTTCAAGTGGCTGTATCAAATTCACTGGTCTTACTAATCACTGTCTTTACCAGTGA
1761 GTACAAAAAGTTAAGGCAACTAGGACAGGTACTGCTCTATACCAAGAAGAGAATGATTCTTTGGAAATTGTTATTTTTAA
1841 GCTTCTGTTAATTTTTCCAGAAGTTTAGTGCGTTTCTTTTCCATACTTTCTCCCCTAATTCTTTTATTTGAAGAAGAGAA
1921 CTTAATGGCAAATAAACAACAAACCAGGACATGCATTTTAATACCCTAAGGAAAAATGGAACCCTCAAATATAACTCCTC
2001 CCACAACCACCCTAATGTGCCTCAGTCTGGGGCAGCAGGTGGACTTCTCAATAGTTCTTTTCCACATTCTCTACAAATCA
2081 CATCTACCGTTAAGGAATATGTTATGAATCCTTTCTGTTAATTGAGAAAGCAATGTTATTGTCTGTGATTTCCAGTCTTT
2161 GCTCATTTTATTATCCCTGTCAAATAATGTAATATTGGTACCTGCAGTTGAATTTGTAATATTGTAATTGAATTTTTAGT
2241 TGATCTTCGATCAGTTTTTATAGCATCTATGGACATAGAAAATCAGTCACTGAAAAAAATAAACACAGCTTTCAATGTCT
2321 CACTCAACATGTAACATTCAAAATTGTGATCTTCATAAAGACATTGTTACCATTCGTCTTGCAAATTTAAGACAACTGAA
2401 TGAAAAGCCAATTTTTTGAAAGAATGTGGCATATAATTAGATATACAACTGAAACAGGATATACAACTGCATACAATTTG
2481 TTTTTAATGATATTTTAAAATAGCCTGTTAGCAGGAAAATAGTCCCTATTTATCTGCTAATGGTCAAAAAGAGTTAGGAT
2561 ATAAATCGTACCAAAATGTTTCCAATCACTCAGAAAAACTGATTCATGTCTGGCTTTGCAACACCTTAAACATTTATTCT
2641 GTCATAGATAGTAAAGCCCCATCTCAGTTTATTTAGTCCTGAGGTTGGCAGCATGGGGTTTGACTATATGAGCTAAAAGA
2721 TACACAAAGAGATAACGCTGTTTCATAATAAACAGGAATTGACTATACAAATAGGTAAACCAGCATATCTACCTGTATTT
2801 CTCAGAGTTTAGATGTGTGCTTTATGTTTACATTAAAATAAAGCCTAACGCCACAGTAGATCATCTCATACTGCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gguuGGAGCU--GCUAGAGGAGu 5'
              |:|: |  |  ||||||| 
Target 5' tattCTTTCACCCCCTCTCCTCc 3'
 43 - 65 143.00 -10.31
2 
miRNA  3' gguUGGAGCUGCUAGAGGAGu 5'
             :::|: || :||||||: 
Target 5' tttGTTTTAACTGTCTCCTTg 3'
 1620 - 1640 138.00 -10.00
3 
miRNA  3' gguuggAGCUGCUAGAGGAGu 5'
                || || ||:||||: 
Target 5' gctttgTCCACAATTTCCTTa 3'
 718 - 738 127.00 -12.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31612000 15 COSMIC
COSN30155908 26 COSMIC
COSN26991283 30 COSMIC
COSN30183779 71 COSMIC
COSN27765951 93 COSMIC
COSN19773466 113 COSMIC
COSN16749113 149 COSMIC
COSN21199673 174 COSMIC
COSN28659344 201 COSMIC
COSN31590907 201 COSMIC
COSN6701764 271 COSMIC
COSN21452596 377 COSMIC
COSN6701765 1373 COSMIC
COSN1366702 1386 COSMIC
COSN22490276 2208 COSMIC
COSN8093980 2659 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1346716886 3 dbSNP
rs773689103 3 dbSNP
rs1188227731 4 dbSNP
rs1382131157 7 dbSNP
rs1420170212 11 dbSNP
rs757293335 13 dbSNP
rs780537404 17 dbSNP
rs1459176245 18 dbSNP
rs747863803 19 dbSNP
rs1372036413 22 dbSNP
rs1443980067 23 dbSNP
rs769424837 24 dbSNP
rs1379776391 26 dbSNP
rs367660654 28 dbSNP
rs201836844 29 dbSNP
rs774366556 30 dbSNP
rs768816502 32 dbSNP
rs761085996 33 dbSNP
rs776844091 33 dbSNP
rs1457451924 40 dbSNP
rs1327165602 41 dbSNP
rs1342827585 42 dbSNP
rs1295287395 45 dbSNP
rs368529941 46 dbSNP
rs766953632 52 dbSNP
rs1240032182 54 dbSNP
rs765564723 55 dbSNP
rs750636435 57 dbSNP
rs763402252 58 dbSNP
rs924171724 60 dbSNP
rs1425305905 64 dbSNP
rs1165171032 65 dbSNP
rs956888333 66 dbSNP
rs989639098 71 dbSNP
rs1332650629 73 dbSNP
rs566202905 78 dbSNP
rs1274658273 90 dbSNP
rs958254811 95 dbSNP
rs989699093 98 dbSNP
rs915368920 103 dbSNP
rs948164005 104 dbSNP
rs1045520955 105 dbSNP
rs1455127603 122 dbSNP
rs928000021 124 dbSNP
rs966849176 125 dbSNP
rs1474715767 126 dbSNP
rs976983173 130 dbSNP
rs939324109 131 dbSNP
rs1057070266 137 dbSNP
rs748002664 139 dbSNP
rs879019819 141 dbSNP
rs932773705 148 dbSNP
rs886342355 152 dbSNP
rs781262045 155 dbSNP
rs536539749 167 dbSNP
rs1275196581 172 dbSNP
rs746390525 174 dbSNP
rs1334497097 178 dbSNP
rs1036952561 179 dbSNP
rs1230024935 185 dbSNP
rs897112684 189 dbSNP
rs995953688 190 dbSNP
rs1045593798 197 dbSNP
rs770234845 203 dbSNP
rs775952223 207 dbSNP
rs1029138870 208 dbSNP
rs1001304978 209 dbSNP
rs1388082321 211 dbSNP
rs1171192131 221 dbSNP
rs1169287731 226 dbSNP
rs1462251109 253 dbSNP
rs1372344537 259 dbSNP
rs1032605787 261 dbSNP
rs890154114 262 dbSNP
rs183524386 264 dbSNP
rs1194281932 265 dbSNP
rs1451145402 272 dbSNP
rs569893659 273 dbSNP
rs1008967396 274 dbSNP
rs749691937 285 dbSNP
rs1340484321 297 dbSNP
rs752270144 299 dbSNP
rs1251173358 303 dbSNP
rs1031293264 305 dbSNP
rs1226801028 310 dbSNP
rs537584152 321 dbSNP
rs769003975 322 dbSNP
rs1439434874 329 dbSNP
rs187759374 345 dbSNP
rs1307825262 346 dbSNP
rs1356578049 348 dbSNP
rs966963624 349 dbSNP
rs1395460582 350 dbSNP
rs1166532809 359 dbSNP
rs1436375967 360 dbSNP
rs76823768 367 dbSNP
rs1395565431 375 dbSNP
rs1416994059 376 dbSNP
rs1172947023 379 dbSNP
rs777633252 389 dbSNP
rs746609391 390 dbSNP
rs200305948 393 dbSNP
rs796592975 393 dbSNP
rs1245119291 394 dbSNP
rs977305380 396 dbSNP
rs773889108 401 dbSNP
rs577588131 408 dbSNP
rs761463505 409 dbSNP
rs1309194939 410 dbSNP
rs985567496 413 dbSNP
rs969932094 421 dbSNP
rs1234272667 422 dbSNP
rs41272433 429 dbSNP
rs554043278 431 dbSNP
rs918493712 433 dbSNP
rs950017766 435 dbSNP
rs928017930 436 dbSNP
rs1045945948 445 dbSNP
rs905704740 451 dbSNP
rs1472569717 452 dbSNP
rs1312187383 457 dbSNP
rs1412759100 463 dbSNP
rs937047971 463 dbSNP
rs1054133606 467 dbSNP
rs878944048 469 dbSNP
rs939393453 478 dbSNP
rs1448210396 484 dbSNP
rs1470566520 490 dbSNP
rs1168576355 497 dbSNP
rs982737427 502 dbSNP
rs1486850214 509 dbSNP
rs1258734265 517 dbSNP
rs1209992085 518 dbSNP
rs1441238382 519 dbSNP
rs1286979661 520 dbSNP
rs907834922 523 dbSNP
rs1223811530 525 dbSNP
rs1327865926 528 dbSNP
rs370058692 532 dbSNP
rs1234815388 539 dbSNP
rs940622575 541 dbSNP
rs1292494351 542 dbSNP
rs572408715 545 dbSNP
rs766968712 551 dbSNP
rs1318928145 558 dbSNP
rs1019933562 559 dbSNP
rs931791996 560 dbSNP
rs1157209509 581 dbSNP
rs1446755702 583 dbSNP
rs1476331842 586 dbSNP
rs1418997373 602 dbSNP
rs1270272690 610 dbSNP
rs1181588113 621 dbSNP
rs1472030231 623 dbSNP
rs1050215326 625 dbSNP
rs1244266221 626 dbSNP
rs1366816945 627 dbSNP
rs745778753 632 dbSNP
rs113877343 633 dbSNP
rs1296854964 637 dbSNP
rs1265772615 639 dbSNP
rs1348468910 641 dbSNP
rs772731210 643 dbSNP
rs1335133212 659 dbSNP
rs1288733771 663 dbSNP
rs1201999103 667 dbSNP
rs1226360984 668 dbSNP
rs374973250 670 dbSNP
rs1270683841 677 dbSNP
rs1430014873 680 dbSNP
rs1008603570 687 dbSNP
rs1364504620 688 dbSNP
rs1030676332 690 dbSNP
rs1463097586 691 dbSNP
rs777733956 696 dbSNP
rs1395439893 711 dbSNP
rs1164346396 719 dbSNP
rs1403893715 725 dbSNP
rs1030208699 729 dbSNP
rs879183235 731 dbSNP
rs559219040 742 dbSNP
rs954240259 743 dbSNP
rs542937510 746 dbSNP
rs1468561814 750 dbSNP
rs1244055588 762 dbSNP
rs1463638121 766 dbSNP
rs79502934 772 dbSNP
rs1187967524 775 dbSNP
rs1396241422 786 dbSNP
rs1273495330 787 dbSNP
rs576273861 789 dbSNP
rs1017021830 790 dbSNP
rs1424812912 798 dbSNP
rs892102139 800 dbSNP
rs1443105144 811 dbSNP
rs760242044 815 dbSNP
rs1022530663 816 dbSNP
rs969606925 818 dbSNP
rs981332952 828 dbSNP
rs1171624780 832 dbSNP
rs949973778 843 dbSNP
rs1035142359 844 dbSNP
rs1176085920 848 dbSNP
rs1454289293 852 dbSNP
rs981384588 855 dbSNP
rs1189067975 862 dbSNP
rs1481439235 869 dbSNP
rs961072153 878 dbSNP
rs1233122256 882 dbSNP
rs982789623 891 dbSNP
rs77133934 895 dbSNP
rs565190316 903 dbSNP
rs766462793 917 dbSNP
rs753826647 918 dbSNP
rs754882505 922 dbSNP
rs1234998596 924 dbSNP
rs1432314699 929 dbSNP
rs532549048 930 dbSNP
rs1300729132 939 dbSNP
rs1375740101 944 dbSNP
rs547515559 944 dbSNP
rs1308899920 949 dbSNP
rs749515164 950 dbSNP
rs1369113091 955 dbSNP
rs1054246795 958 dbSNP
rs892871473 964 dbSNP
rs765020333 968 dbSNP
rs920497735 980 dbSNP
rs1420383909 984 dbSNP
rs751732425 986 dbSNP
rs559320118 990 dbSNP
rs1272864043 995 dbSNP
rs1259437332 999 dbSNP
rs1344123956 999 dbSNP
rs746868982 1001 dbSNP
rs1224107725 1008 dbSNP
rs1254204010 1010 dbSNP
rs1482916547 1010 dbSNP
rs1270297323 1018 dbSNP
rs945816648 1020 dbSNP
rs1327289160 1022 dbSNP
rs530354993 1024 dbSNP
rs1318818806 1026 dbSNP
rs1289160208 1027 dbSNP
rs35329667 1040 dbSNP
rs1228079079 1048 dbSNP
rs1041335211 1049 dbSNP
rs1295550171 1053 dbSNP
rs1396995937 1055 dbSNP
rs140580809 1074 dbSNP
rs890256889 1075 dbSNP
rs1301608414 1085 dbSNP
rs1253637322 1090 dbSNP
rs944446708 1091 dbSNP
rs1197450879 1092 dbSNP
rs1157948730 1096 dbSNP
rs1029911847 1097 dbSNP
rs1419737063 1100 dbSNP
rs7413 1101 dbSNP
rs1470747387 1114 dbSNP
rs1007049289 1120 dbSNP
rs1017136862 1121 dbSNP
rs962759554 1123 dbSNP
rs972821963 1124 dbSNP
rs1275316388 1125 dbSNP
rs1026026847 1126 dbSNP
rs892154655 1139 dbSNP
rs1413760088 1141 dbSNP
rs1340258930 1143 dbSNP
rs1010557652 1146 dbSNP
rs537219268 1156 dbSNP
rs1455276080 1167 dbSNP
rs1157791049 1173 dbSNP
rs1394494555 1175 dbSNP
rs868230308 1180 dbSNP
rs1311188786 1181 dbSNP
rs549850657 1185 dbSNP
rs905432572 1200 dbSNP
rs1319363140 1206 dbSNP
rs1330416828 1207 dbSNP
rs1442698594 1210 dbSNP
rs1163486299 1222 dbSNP
rs927221954 1226 dbSNP
rs937284450 1232 dbSNP
rs1289929619 1236 dbSNP
rs914417727 1237 dbSNP
rs989919673 1237 dbSNP
rs745995131 1239 dbSNP
rs1463604131 1248 dbSNP
rs1041448756 1260 dbSNP
rs1227943316 1265 dbSNP
rs1274032250 1272 dbSNP
rs1358629421 1273 dbSNP
rs1208119020 1279 dbSNP
rs1356084598 1284 dbSNP
rs1264091616 1298 dbSNP
rs923052196 1300 dbSNP
rs1289845700 1301 dbSNP
rs1438862182 1309 dbSNP
rs1184818890 1325 dbSNP
rs369628178 1340 dbSNP
rs932993378 1343 dbSNP
rs1385938518 1347 dbSNP
rs1388280372 1356 dbSNP
rs1169378490 1358 dbSNP
rs1430200605 1368 dbSNP
rs571212921 1370 dbSNP
rs538716461 1372 dbSNP
rs1004274418 1373 dbSNP
rs780603694 1375 dbSNP
rs749781657 1377 dbSNP
rs1379509969 1380 dbSNP
rs373337569 1382 dbSNP
rs1007162233 1386 dbSNP
rs1038515066 1394 dbSNP
rs1418107457 1403 dbSNP
rs1265565226 1409 dbSNP
rs1197887464 1410 dbSNP
rs898667908 1411 dbSNP
rs994377644 1412 dbSNP
rs1025722080 1414 dbSNP
rs971919514 1419 dbSNP
rs536256865 1428 dbSNP
rs1389948520 1438 dbSNP
rs962715925 1441 dbSNP
rs553531099 1443 dbSNP
rs1330478256 1445 dbSNP
rs1410141270 1447 dbSNP
rs1369779293 1452 dbSNP
rs974036906 1455 dbSNP
rs1436544894 1457 dbSNP
rs1404412197 1460 dbSNP
rs920562790 1461 dbSNP
rs572047030 1463 dbSNP
rs1376071296 1465 dbSNP
rs1348468576 1471 dbSNP
rs12544487 1475 dbSNP
rs1294184332 1476 dbSNP
rs911726540 1485 dbSNP
rs554878649 1488 dbSNP
rs944497769 1490 dbSNP
rs1052207033 1492 dbSNP
rs1279988375 1503 dbSNP
rs1199321876 1506 dbSNP
rs1342277467 1506 dbSNP
rs913640902 1510 dbSNP
rs1228695345 1514 dbSNP
rs914365224 1516 dbSNP
rs78628010 1517 dbSNP
rs1340702700 1518 dbSNP
rs1043779373 1519 dbSNP
rs555142484 1520 dbSNP
rs1359634976 1521 dbSNP
rs904816469 1523 dbSNP
rs1002875441 1531 dbSNP
rs747780041 1536 dbSNP
rs1273106329 1541 dbSNP
rs923032060 1558 dbSNP
rs896683911 1559 dbSNP
rs1482966993 1560 dbSNP
rs1161644288 1563 dbSNP
rs629268 1568 dbSNP
rs1050069961 1574 dbSNP
rs1425134259 1576 dbSNP
rs1180418432 1583 dbSNP
rs1184794372 1591 dbSNP
rs1473980234 1593 dbSNP
rs1187533261 1613 dbSNP
rs772711703 1613 dbSNP
rs1440187566 1614 dbSNP
rs1269514823 1615 dbSNP
rs572998914 1616 dbSNP
rs565082520 1628 dbSNP
rs995511620 1631 dbSNP
rs1229755695 1633 dbSNP
rs1028751517 1641 dbSNP
rs150407587 1644 dbSNP
rs1428920795 1647 dbSNP
rs1313221695 1654 dbSNP
rs898783965 1663 dbSNP
rs765978203 1665 dbSNP
rs994326478 1669 dbSNP
rs1404652825 1674 dbSNP
rs1204288899 1676 dbSNP
rs79970848 1677 dbSNP
rs1333599810 1693 dbSNP
rs1407422687 1706 dbSNP
rs965896176 1711 dbSNP
rs776727275 1716 dbSNP
rs987962204 1717 dbSNP
rs913690146 1724 dbSNP
rs759476655 1726 dbSNP
rs1188601181 1727 dbSNP
rs1464054620 1733 dbSNP
rs907262777 1738 dbSNP
rs1223395322 1739 dbSNP
rs1322098482 1739 dbSNP
rs1288930122 1746 dbSNP
rs1226514780 1755 dbSNP
rs1344166914 1758 dbSNP
rs1003384908 1760 dbSNP
rs946449948 1761 dbSNP
rs1364619161 1763 dbSNP
rs1342021378 1783 dbSNP
rs958699870 1787 dbSNP
rs1350807256 1788 dbSNP
rs1043448088 1789 dbSNP
rs1235506034 1792 dbSNP
rs649634 1798 dbSNP
rs1403982223 1800 dbSNP
rs1484031289 1804 dbSNP
rs1198435785 1812 dbSNP
rs1255026601 1816 dbSNP
rs1448339105 1826 dbSNP
rs527452829 1830 dbSNP
rs1387861435 1832 dbSNP
rs937674851 1853 dbSNP
rs1464993722 1860 dbSNP
rs1219063324 1861 dbSNP
rs1483920473 1866 dbSNP
rs138129268 1867 dbSNP
rs1227660706 1869 dbSNP
rs967295395 1872 dbSNP
rs752485713 1873 dbSNP
rs548493450 1884 dbSNP
rs1368521010 1886 dbSNP
rs1274493252 1888 dbSNP
rs1403432586 1892 dbSNP
rs192628540 1894 dbSNP
rs1372859740 1896 dbSNP
rs1309170066 1898 dbSNP
rs1037163637 1907 dbSNP
rs1368140865 1908 dbSNP
rs1176546370 1911 dbSNP
rs531143485 1921 dbSNP
rs923114435 1926 dbSNP
rs1423957084 1928 dbSNP
rs552535426 1937 dbSNP
rs954452048 1940 dbSNP
rs996011014 1946 dbSNP
rs75837686 1952 dbSNP
rs1482003897 1959 dbSNP
rs889807638 1965 dbSNP
rs1464353073 1967 dbSNP
rs1008215663 1971 dbSNP
rs1018907614 1973 dbSNP
rs1302546280 1986 dbSNP
rs1221986791 1989 dbSNP
rs1352681509 2001 dbSNP
rs986288322 2021 dbSNP
rs538380311 2022 dbSNP
rs1371764064 2034 dbSNP
rs1437422257 2037 dbSNP
rs2930041 2040 dbSNP
rs988015864 2052 dbSNP
rs1365117187 2059 dbSNP
rs941669427 2060 dbSNP
rs1173770530 2063 dbSNP
rs1442195298 2068 dbSNP
rs1458534126 2073 dbSNP
rs1412283672 2075 dbSNP
rs750639422 2084 dbSNP
rs149557425 2086 dbSNP
rs979615744 2089 dbSNP
rs9437 2090 dbSNP
rs1182435171 2091 dbSNP
rs1483617690 2098 dbSNP
rs1255088850 2118 dbSNP
rs1329378925 2133 dbSNP
rs118165570 2134 dbSNP
rs1245609415 2135 dbSNP
rs75974140 2138 dbSNP
rs1315562430 2140 dbSNP
rs917543475 2155 dbSNP
rs561243519 2158 dbSNP
rs940286348 2163 dbSNP
rs1334061706 2164 dbSNP
rs1037217442 2174 dbSNP
rs1436684390 2176 dbSNP
rs898687255 2178 dbSNP
rs1431279785 2179 dbSNP
rs1451344379 2185 dbSNP
rs931479285 2187 dbSNP
rs1165358548 2188 dbSNP
rs1423223306 2199 dbSNP
rs907370392 2203 dbSNP
rs1181792039 2205 dbSNP
rs938739060 2206 dbSNP
rs1413000125 2209 dbSNP
rs1248820269 2211 dbSNP
rs1050298604 2223 dbSNP
rs1056278354 2226 dbSNP
rs1267651107 2227 dbSNP
rs894596557 2231 dbSNP
rs1321600171 2237 dbSNP
rs1458962633 2247 dbSNP
rs1365369468 2249 dbSNP
rs1157038578 2250 dbSNP
rs186973869 2254 dbSNP
rs1293851519 2255 dbSNP
rs1011519485 2261 dbSNP
rs1170430824 2262 dbSNP
rs1008682632 2266 dbSNP
rs1451401478 2270 dbSNP
rs1021603297 2271 dbSNP
rs903083277 2275 dbSNP
rs558500074 2278 dbSNP
rs1019626989 2285 dbSNP
rs1458460121 2286 dbSNP
rs1030127316 2287 dbSNP
rs1295848786 2290 dbSNP
rs1290198299 2292 dbSNP
rs1366071548 2292 dbSNP
rs1386591385 2297 dbSNP
rs1308099646 2303 dbSNP
rs1350745414 2311 dbSNP
rs1296296981 2314 dbSNP
rs1224639726 2315 dbSNP
rs891765376 2316 dbSNP
rs1009499401 2317 dbSNP
rs145073984 2318 dbSNP
rs1221633167 2319 dbSNP
rs771308899 2321 dbSNP
rs1309739688 2323 dbSNP
rs1267191629 2327 dbSNP
rs548808207 2330 dbSNP
rs968317599 2333 dbSNP
rs979283159 2343 dbSNP
rs1369894913 2349 dbSNP
rs1487442508 2350 dbSNP
rs1033888629 2351 dbSNP
rs1379529304 2353 dbSNP
rs754374202 2356 dbSNP
rs1480312897 2363 dbSNP
rs1017352878 2366 dbSNP
rs1207893430 2367 dbSNP
rs76705987 2376 dbSNP
rs973043277 2377 dbSNP
rs1193506868 2379 dbSNP
rs652422 2382 dbSNP
rs1256214839 2389 dbSNP
rs1232125173 2391 dbSNP
rs138862634 2396 dbSNP
rs1289927608 2398 dbSNP
rs1349723544 2412 dbSNP
rs1410237901 2412 dbSNP
rs541779635 2414 dbSNP
rs1408262880 2419 dbSNP
rs374444619 2420 dbSNP
rs1166948422 2425 dbSNP
rs1348673259 2432 dbSNP
rs931507278 2443 dbSNP
rs531153519 2445 dbSNP
rs1427488432 2449 dbSNP
rs1184736002 2453 dbSNP
rs1473127817 2458 dbSNP
rs1055915130 2459 dbSNP
rs1180361969 2460 dbSNP
rs1309027301 2463 dbSNP
rs142611281 2467 dbSNP
rs113076295 2474 dbSNP
rs947493063 2475 dbSNP
rs911338556 2476 dbSNP
rs1320917817 2477 dbSNP
rs564556798 2477 dbSNP
rs191757602 2480 dbSNP
rs1228718604 2481 dbSNP
rs1041120803 2486 dbSNP
rs1277697460 2488 dbSNP
rs1450177701 2489 dbSNP
rs891818500 2491 dbSNP
rs1010229984 2492 dbSNP
rs113490250 2494 dbSNP
rs1452047053 2502 dbSNP
rs1228429676 2505 dbSNP
rs1404100596 2507 dbSNP
rs1042364173 2508 dbSNP
rs903768856 2509 dbSNP
rs1407803275 2523 dbSNP
rs998906201 2524 dbSNP
rs1474030611 2525 dbSNP
rs1319855678 2527 dbSNP
rs1030657124 2528 dbSNP
rs746605936 2538 dbSNP
rs1033526539 2543 dbSNP
rs1483939855 2546 dbSNP
rs1202718706 2552 dbSNP
rs764505675 2552 dbSNP
rs890408553 2555 dbSNP
rs184729393 2563 dbSNP
rs1356914554 2565 dbSNP
rs1473218915 2568 dbSNP
rs1183688696 2569 dbSNP
rs1380754623 2578 dbSNP
rs1017468616 2586 dbSNP
rs1423318342 2596 dbSNP
rs1169850183 2605 dbSNP
rs867093028 2607 dbSNP
rs1392545846 2628 dbSNP
rs1407436825 2632 dbSNP
rs1024663577 2635 dbSNP
rs1163572549 2637 dbSNP
rs963097364 2647 dbSNP
rs776237973 2659 dbSNP
rs972363705 2660 dbSNP
rs1240034054 2663 dbSNP
rs1223412126 2669 dbSNP
rs1025944300 2671 dbSNP
rs759564931 2672 dbSNP
rs1290934022 2676 dbSNP
rs1448215372 2680 dbSNP
rs950429979 2691 dbSNP
rs981833192 2692 dbSNP
rs769816894 2697 dbSNP
rs775257740 2701 dbSNP
rs928866713 2707 dbSNP
rs1376411391 2708 dbSNP
rs1361447308 2709 dbSNP
rs1268648543 2713 dbSNP
rs1439035296 2717 dbSNP
rs960342525 2719 dbSNP
rs1423348253 2722 dbSNP
rs565742296 2722 dbSNP
rs560218045 2723 dbSNP
rs774954542 2724 dbSNP
rs1408868521 2726 dbSNP
rs944178531 2734 dbSNP
rs116372466 2737 dbSNP
rs1267970411 2739 dbSNP
rs1197167059 2748 dbSNP
rs1483970507 2749 dbSNP
rs1225928112 2758 dbSNP
rs1307046669 2764 dbSNP
rs532229861 2764 dbSNP
rs1271141467 2766 dbSNP
rs1051796331 2767 dbSNP
rs748136364 2768 dbSNP
rs1443223707 2770 dbSNP
rs189591638 2771 dbSNP
rs1043083080 2774 dbSNP
rs181704218 2780 dbSNP
rs867321961 2782 dbSNP
rs1403523607 2783 dbSNP
rs1352799476 2787 dbSNP
rs1299257755 2789 dbSNP
rs1461035357 2790 dbSNP
rs1352332306 2791 dbSNP
rs1000803098 2792 dbSNP
rs1038855417 2799 dbSNP
rs899003003 2804 dbSNP
rs1055429171 2806 dbSNP
rs1473456726 2811 dbSNP
rs1235937367 2813 dbSNP
rs1482995362 2817 dbSNP
rs1231300680 2823 dbSNP
rs895004340 2827 dbSNP
rs1189265030 2833 dbSNP
rs1392604298 2834 dbSNP
rs1262758154 2846 dbSNP
rs185297839 2851 dbSNP
rs1026058480 2852 dbSNP
rs1391367101 2856 dbSNP
rs766470057 2857 dbSNP
rs753968913 2863 dbSNP
rs1370516077 2866 dbSNP
rs1452729738 2869 dbSNP
rs1404822028 2871 dbSNP
rs1168355348 2873 dbSNP
rs664796 2876 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions C8166 , TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462572. RNA binding protein: AGO2. Condition:C8166 NL4-3 PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gguuGGAGCU--GCUAGAGGAGu 5'
              |:|: |  |  ||||||| 
Target 5' uauuCUUUCACCCCCUCUCCUCc 3'
 		11 - 33
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_002865 | 3UTR | CCUACUCACUUAUUCUUUCACCCCCUCUCCUCCUGCUCAGCUGAGACAUGAAACUAUUUGAAAUGGCUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_001242644 | 3UTR | UCACUUAUUCUUUCACCCCCUCUCCUCCUGCUCAGCUGAGACAUGAAACUAUUUGAAAUGGCUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_001242644 | 3UTR | CUCCUGCUCAGCUGAGACAUGAAACUAUUUGAAAUGGCUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_001242644 | 3UTR | UAUUCUUUCACCCCCUCUCCUCCUGCUCAGCUGAGACAUGAAACUAUUUGAAAUGGCUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_002865 | 3UTR | CCAACGGGGCCUACUCACUUAUUCUUUCACCCCCUCUCCUCCUGCUCAGCUGAGACAUGAAACUAUUUGAAAUGGCUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1462572
Method / RBP PAR-CLIP / AGO2
Cell line / Condition C8166 / C8166 NL4-3
Location of target site ENST00000262646.7 | 3UTR | UUAUUCUUUCACCCCCUCUCCUCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000262646.7 | 3UTR | CCUACUCACUUAUUCUUUCACCCCCUCUCCUCCUGCUCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
BLCA 0.498 0.03 0.479 0.04 15 Click to see details
KIRC -0.562 0.06 -0.367 0.17 9 Click to see details
PAAD -0.862 0.07 -0.800 0.1 4 Click to see details
THCA -0.27 0.09 -0.283 0.08 26 Click to see details
HNSC 0.19 0.12 0.164 0.15 41 Click to see details
KIRP -0.353 0.13 -0.049 0.44 12 Click to see details
PRAD -0.552 0.17 -0.500 0.2 5 Click to see details
UCEC 0.441 0.23 0.700 0.09 5 Click to see details
LUSC 0.136 0.23 -0.033 0.43 31 Click to see details
CHOL -0.487 0.26 -0.400 0.3 4 Click to see details
ESCA -0.662 0.27 -0.500 0.33 3 Click to see details
BRCA 0.065 0.3 0.192 0.06 65 Click to see details
STAD -0.09 0.35 -0.090 0.35 22 Click to see details
LUAD -0.125 0.35 -0.196 0.27 12 Click to see details
LIHC 0.064 0.37 0.312 0.05 29 Click to see details
KICH 0.016 0.48 -0.093 0.38 13 Click to see details
KICH 0.016 0.48 -0.093 0.38 13 Click to see details
KICH 0.016 0.48 -0.093 0.38 13 Click to see details
182 hsa-miR-3150b-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT066803 ARID1A AT-rich interaction domain 1A 2 2
MIRT087964 TNRC6B trinucleotide repeat containing 6B 2 4
MIRT112200 BTG2 BTG anti-proliferation factor 2 2 2
MIRT115553 MAZ MYC associated zinc finger protein 2 2
MIRT119127 SPOPL speckle type BTB/POZ protein like 2 2
MIRT153910 NCOA3 nuclear receptor coactivator 3 2 2
MIRT187986 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT240368 RAB2A RAB2A, member RAS oncogene family 2 2
MIRT249675 SLC39A9 solute carrier family 39 member 9 2 4
MIRT267540 C1ORF226 chromosome 1 open reading frame 226 2 2
MIRT282540 SLCO3A1 solute carrier organic anion transporter family member 3A1 2 2
MIRT319703 UBN2 ubinuclein 2 2 2
MIRT373666 POU2F1 POU class 2 homeobox 1 2 2
MIRT390213 GNAI2 G protein subunit alpha i2 2 4
MIRT444379 SH3TC2 SH3 domain and tetratricopeptide repeats 2 2 2
MIRT445600 CAMK2N1 calcium/calmodulin dependent protein kinase II inhibitor 1 2 2
MIRT445635 TMEM50A transmembrane protein 50A 2 2
MIRT447181 PGRMC2 progesterone receptor membrane component 2 2 2
MIRT447212 APBB2 amyloid beta precursor protein binding family B member 2 2 2
MIRT447247 IHH indian hedgehog 2 2
MIRT447809 EMX1 empty spiracles homeobox 1 2 2
MIRT447829 CTIF cap binding complex dependent translation initiation factor 2 2
MIRT449181 LUC7L3 LUC7 like 3 pre-mRNA splicing factor 2 2
MIRT451253 ZNF444 zinc finger protein 444 2 2
MIRT451378 C19orf43 telomerase RNA component interacting RNase 2 2
MIRT451526 C16orf58 chromosome 16 open reading frame 58 2 2
MIRT451700 C1RL complement C1r subcomponent like 2 2
MIRT453643 SLC4A2 solute carrier family 4 member 2 2 2
MIRT454417 SEPT6 septin 6 2 2
MIRT454636 FAM83H family with sequence similarity 83 member H 2 2
MIRT454889 RAD50 RAD50 double strand break repair protein 2 2
MIRT455298 BCL2L1 BCL2 like 1 2 2
MIRT455521 C6orf106 chromosome 6 open reading frame 106 2 2
MIRT455937 SURF6 surfeit 6 2 2
MIRT456133 SAMD10 sterile alpha motif domain containing 10 2 2
MIRT456325 ARHGEF2 Rho/Rac guanine nucleotide exchange factor 2 2 2
MIRT457301 ZBTB45 zinc finger and BTB domain containing 45 2 2
MIRT457461 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT457533 ZMAT5 zinc finger matrin-type 5 2 2
MIRT457797 VWA1 von Willebrand factor A domain containing 1 2 2
MIRT457917 ZNF212 zinc finger protein 212 2 2
MIRT457936 LCE1A late cornified envelope 1A 2 2
MIRT458914 DNM2 dynamin 2 2 4
MIRT459075 WFIKKN2 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 2 2
MIRT459484 CCL11 C-C motif chemokine ligand 11 2 2
MIRT459774 IDH3A isocitrate dehydrogenase 3 (NAD(+)) alpha 2 2
MIRT460317 SH3RF1 SH3 domain containing ring finger 1 2 2
MIRT460697 RNF157 ring finger protein 157 2 2
MIRT462049 HOXC13 homeobox C13 2 2
MIRT462156 IGFBP5 insulin like growth factor binding protein 5 2 4
MIRT463293 ZFP91 ZFP91 zinc finger protein 2 2
MIRT463803 XPOT exportin for tRNA 2 2
MIRT463895 WNT7B Wnt family member 7B 2 2
MIRT463942 WIZ widely interspaced zinc finger motifs 2 2
MIRT464660 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 4
MIRT465664 TNPO2 transportin 2 2 2
MIRT465923 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 4
MIRT466003 TMEM189 transmembrane protein 189 2 4
MIRT466824 STX6 syntaxin 6 2 6
MIRT467652 SLC7A1 solute carrier family 7 member 1 2 2
MIRT467820 SLC29A2 solute carrier family 29 member 2 2 2
MIRT468743 SDC2 syndecan 2 2 2
MIRT468793 SBK1 SH3 domain binding kinase 1 2 4
MIRT469989 PTPN14 protein tyrosine phosphatase, non-receptor type 14 2 2
MIRT471352 PEG10 paternally expressed 10 2 2
MIRT472016 NPTXR neuronal pentraxin receptor 2 2
MIRT472255 NFIC nuclear factor I C 2 2
MIRT473114 MLXIP MLX interacting protein 2 2
MIRT473725 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT474006 LRRC20 leucine rich repeat containing 20 2 2
MIRT474644 KLF16 Kruppel like factor 16 2 2
MIRT477420 EN2 engrailed homeobox 2 2 2
MIRT477724 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 2 2
MIRT479574 CDC42SE1 CDC42 small effector 1 2 2
MIRT480428 C17orf85 nuclear cap binding subunit 3 2 2
MIRT480439 C17orf49 chromosome 17 open reading frame 49 2 2
MIRT480650 BSCL2 BSCL2, seipin lipid droplet biogenesis associated 2 2
MIRT480984 BBC3 BCL2 binding component 3 2 2
MIRT481061 BASP1 brain abundant membrane attached signal protein 1 2 2
MIRT481257 ATXN7L3 ataxin 7 like 3 2 2
MIRT481494 ARL6IP1 ADP ribosylation factor like GTPase 6 interacting protein 1 2 8
MIRT482034 AMER1 APC membrane recruitment protein 1 2 2
MIRT482663 FAM195B MAPK regulated corepressor interacting protein 1 2 4
MIRT482681 NXN nucleoredoxin 2 4
MIRT482710 XRCC3 X-ray repair cross complementing 3 2 2
MIRT482835 GLI4 GLI family zinc finger 4 2 2
MIRT483324 SLC35C2 solute carrier family 35 member C2 2 4
MIRT483410 SPATA6 spermatogenesis associated 6 2 4
MIRT483591 SLC26A9 solute carrier family 26 member 9 2 2
MIRT483781 CASKIN1 CASK interacting protein 1 2 4
MIRT483819 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 6
MIRT483845 UNC5B unc-5 netrin receptor B 2 4
MIRT483972 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT484083 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 4
MIRT484393 ZNF710 zinc finger protein 710 2 4
MIRT484510 SYT7 synaptotagmin 7 2 2
MIRT484797 GPRC5A G protein-coupled receptor class C group 5 member A 2 2
MIRT484858 ZNF70 zinc finger protein 70 2 4
MIRT485397 MRVI1 murine retrovirus integration site 1 homolog 2 8
MIRT485614 FOSL1 FOS like 1, AP-1 transcription factor subunit 2 4
MIRT486168 TLE3 transducin like enhancer of split 3 2 2
MIRT486228 NLRP2 NLR family pyrin domain containing 2 2 2
MIRT486249 FASTK Fas activated serine/threonine kinase 2 2
MIRT486296 KBTBD3 kelch repeat and BTB domain containing 3 2 2
MIRT486384 TIGD5 tigger transposable element derived 5 2 2
MIRT486474 TSC22D1 TSC22 domain family member 1 2 2
MIRT486567 SLC38A4 solute carrier family 38 member 4 2 2
MIRT486615 METTL6 methyltransferase like 6 2 2
MIRT487499 IL1F10 interleukin 1 family member 10 2 4
MIRT487520 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT487929 KCND1 potassium voltage-gated channel subfamily D member 1 2 2
MIRT488047 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT488063 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT488173 PRRC2B proline rich coiled-coil 2B 2 4
MIRT488326 AFF2 AF4/FMR2 family member 2 2 4
MIRT488925 GFRAL GDNF family receptor alpha like 2 2
MIRT489288 RBM8A RNA binding motif protein 8A 2 8
MIRT489483 SLITRK5 SLIT and NTRK like family member 5 2 2
MIRT490460 PROSER2 proline and serine rich 2 2 2
MIRT490563 TEX261 testis expressed 261 2 4
MIRT490843 ADD2 adducin 2 2 2
MIRT491355 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT491455 HOXB5 homeobox B5 2 2
MIRT491585 USB1 U6 snRNA biogenesis phosphodiesterase 1 2 2
MIRT492735 PHF12 PHD finger protein 12 2 2
MIRT493053 MYO1C myosin IC 2 4
MIRT493603 HMGB3 high mobility group box 3 2 6
MIRT493686 HAP1 huntingtin associated protein 1 2 2
MIRT493793 GATA6 GATA binding protein 6 2 2
MIRT493881 FAM73B mitoguardin 2 2 4
MIRT494238 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT494512 BDNF-AS BDNF antisense RNA 2 2
MIRT494717 ARHGAP31 Rho GTPase activating protein 31 2 2
MIRT494907 UCP2 uncoupling protein 2 2 2
MIRT498832 ZNF561 zinc finger protein 561 2 2
MIRT498921 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT498949 IKBKG inhibitor of nuclear factor kappa B kinase subunit gamma 2 2
MIRT499551 C15orf43 telomere repeat binding bouquet formation protein 2 2 2
MIRT501370 REXO1 RNA exonuclease 1 homolog 2 4
MIRT511910 FKBP1A FK506 binding protein 1A 2 2
MIRT512594 ZNF783 zinc finger family member 783 2 2
MIRT513339 CDK2 cyclin dependent kinase 2 2 4
MIRT513729 PSD3 pleckstrin and Sec7 domain containing 3 2 4
MIRT527702 IL17REL interleukin 17 receptor E like 2 2
MIRT533488 TRIM71 tripartite motif containing 71 2 2
MIRT533680 TMEM86A transmembrane protein 86A 2 2
MIRT534167 SLC8A1 solute carrier family 8 member A1 2 2
MIRT537885 EDA2R ectodysplasin A2 receptor 2 2
MIRT538548 CELF1 CUGBP Elav-like family member 1 2 2
MIRT552014 RAD18 RAD18, E3 ubiquitin protein ligase 2 2
MIRT555336 PPP1R3B protein phosphatase 1 regulatory subunit 3B 2 4
MIRT565155 TUBB2A tubulin beta 2A class IIa 2 2
MIRT568712 TMEM30B transmembrane protein 30B 2 2
MIRT568824 TRIM67 tripartite motif containing 67 2 2
MIRT569459 PIGP phosphatidylinositol glycan anchor biosynthesis class P 2 2
MIRT569589 PRELP proline and arginine rich end leucine rich repeat protein 2 2
MIRT569619 ASTN2 astrotactin 2 2 2
MIRT569826 CRMP1 collapsin response mediator protein 1 2 2
MIRT569985 TMEM184A transmembrane protein 184A 2 2
MIRT570066 CPNE2 copine 2 2 2
MIRT570540 RPH3A rabphilin 3A 2 2
MIRT570729 CELSR2 cadherin EGF LAG seven-pass G-type receptor 2 2 2
MIRT570797 CKAP2L cytoskeleton associated protein 2 like 2 2
MIRT570898 METTL21A methyltransferase like 21A 2 2
MIRT570944 CPE carboxypeptidase E 2 2
MIRT570964 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT571169 ZNF85 zinc finger protein 85 2 2
MIRT573015 RPP25 ribonuclease P and MRP subunit p25 2 2
MIRT573673 HES6 hes family bHLH transcription factor 6 2 2
MIRT574812 EIF1 eukaryotic translation initiation factor 1 2 2
MIRT576755 Tmem127 transmembrane protein 127 2 2
MIRT618157 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 2 2
MIRT643640 EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit 2 2
MIRT649084 CACNA1B calcium voltage-gated channel subunit alpha1 B 2 2
MIRT658378 FAM53C family with sequence similarity 53 member C 2 2
MIRT667955 HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 2 2
MIRT691696 FLOT2 flotillin 2 2 2
MIRT697545 ZBTB44 zinc finger and BTB domain containing 44 2 2
MIRT701530 NDEL1 nudE neurodevelopment protein 1 like 1 2 2
MIRT705766 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT715222 NPVF neuropeptide VF precursor 2 2
MIRT719548 CBLB Cbl proto-oncogene B 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3150b-3p Paclitaxel 36314 NSC125973 approved sensitive High Laryngeal Cancer cell line (Hep2)
hsa-miR-3150b-3p Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PATU8988)
hsa-miR-3150b-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-3150b-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-3150b-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-3150b-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3150b-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (100 ng/ml)
hsa-miR-3150b-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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