miRTarBase - #MIRT243457


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pre-miRNA Information
pre-miRNA hsa-mir-548f-1   
Genomic Coordinates chr10: 54607874 - 54607957
Synonyms MIR548F-1, MIRN548F1, hsa-mir-548f-1, MIR548F1
Description Homo sapiens miR-548f-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-548f-2   
Genomic Coordinates chr2: 212426263 - 212426360
Synonyms MIR548F-2, MIRN548F2, hsa-mir-548f-2, MIR548F2
Description Homo sapiens miR-548f-2 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-548f-3   
Genomic Coordinates chr5: 110513829 - 110513915
Synonyms MIR548F-3, MIRN548F3, hsa-mir-548f-3, MIR548F3
Description Homo sapiens miR-548f-3 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-548f-4   
Genomic Coordinates chr7: 147378017 - 147378121
Synonyms MIR548F-4, MIRN548F4, hsa-mir-548f-4, MIR548F4
Description Homo sapiens miR-548f-4 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-548f-5   
Genomic Coordinates chrX: 32641474 - 32641559
Synonyms MIR548F-5, MIRN548F5, hsa-mir-548f-5, MIR548F5
Description Homo sapiens miR-548f-5 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548f-3p
Sequence 59| AAAAACUGUAAUUACUUUU |77
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 3 10 - 54607905 29233923 MiREDiBase
A-to-I 4 10 - 54607904 29233923 MiREDiBase
A-to-I 5 10 - 54607903 29233923 MiREDiBase
A-to-I 10 10 - 54607898 29233923 MiREDiBase
A-to-I 3 2 - 212426300 29233923 MiREDiBase
A-to-I 4 2 - 212426299 29233923 MiREDiBase
A-to-I 5 2 - 212426298 29233923 MiREDiBase
A-to-I 3 5 - 110513860 29233923 MiREDiBase
A-to-I 4 5 - 110513859 29233923 MiREDiBase
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN26988089 5 COSMIC
COSN30456990 6 COSMIC
COSN15625252 6 COSMIC
COSN31522782 7 COSMIC
COSN31545996 8 COSMIC
COSN31570212 9 COSMIC
COSN1084275 12 COSMIC
COSN15625251 15 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs966876049 1 dbSNP
rs1321394893 2 dbSNP
rs923504759 3 dbSNP
rs1168522027 5 dbSNP
rs1187070531 5 dbSNP
rs1485986292 6 dbSNP
rs776299100 6 dbSNP
rs1421488925 6 dbSNP
rs748224431 6 dbSNP
rs1262049804 7 dbSNP
rs1258250226 7 dbSNP
rs568151991 8 dbSNP
rs1233367754 8 dbSNP
rs778777095 9 dbSNP
rs760758823 9 dbSNP
rs1330282349 10 dbSNP
rs749737324 10 dbSNP
rs760103713 10 dbSNP
rs754285569 10 dbSNP
rs756628155 10 dbSNP
rs1380895949 10 dbSNP
rs768673400 12 dbSNP
rs1478761955 13 dbSNP
rs1437534303 15 dbSNP
rs749009182 15 dbSNP
rs773271422 15 dbSNP
rs747569615 15 dbSNP
rs779944053 16 dbSNP
rs771761319 16 dbSNP
rs1159501553 18 dbSNP
rs757404662 19 dbSNP
rs1191871489 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol LMLN   
Synonyms GP63, INV, IX14, MSP
Description leishmanolysin like peptidase
Transcript NM_001136049   
Other Transcripts NM_033029   
Expression
Putative miRNA Targets on LMLN
3'UTR of LMLN
(miRNA target sites are highlighted)		 
>LMLN|NM_001136049|3'UTR
   1 GAATGGAAAAGTGGATCTTCAAGATATTCTTTTATGTTATGTTCTTGTGAACAAAGCACAAAGTTTGAGTGAGTGCCAAC
  81 CTATGCAGATGGTAGAAGTGGCATTCCTGGCTTTGGCTTGGAAGAATTGACGACCATCAGACCTTGAAGCAGAACTTCAC
 161 AGCAGCCTGTCCTCATCAGCAACCCAACCACCTTCATCAGCAACCCAACCACCTTCATCAGCAACCCAACCACCTCGTCA
 241 GCAACCCAACCACCTCGTCAGCAACCCAACCACCTCGTCAGCAACCCAGCCACCTTCATCAGCAACCCAACCACCTCATC
 321 AGCAACCCAGCCACCTTCATCAGCAACCCAACCACCTCATCAGCAAACCAACCACTTTCATCTGCAACCCAACCACTTTC
 401 ATCAGCAACTCAACACCTTCATCTGCAACCCAACCACCTTCATCAGCAAACCAACCACCTTCTTCAGCAACCCAACCACC
 481 TCATCTTGGAGAAGGAGAAGGAACTGCAAGCCACCAAGTCTTCATTTTTCAGGGTTTGTAATCTTCCCAAAGTTTTCCTT
 561 TGAAAATAGGATAATGGGTGGAATTTTCAGAGTGATTACATACCTCAACATTTTTATTAACATACAACAATGGGAAAGTT
 641 CATCATCCATATACTGCAGTCACTTAAACAACAGCCAATTATTGCAAGATTAGAATTGGAGATCTTGTCCTCAAAAGTAT
 721 AAATTGTCCTTTGAGTTATAGAAAATAATGGAATTGGGATTTCTACATATCATTATTATACCTATTTTAAATTTAATGGC
 801 AGCCAGGCATGGTTCCAGCTACTTGGGAGGCTGAGGCAGGAGGATCGCTTGAGCCCAGGAGTTCAAGGCTGCAGTGAGCT
 881 ATGATTGCACCACTGTATTCCAGCCTGCACGATAGAGTTAGACCCTGTATCTTAAAAAAAAAAAAATTAATGGCTGGTAT
 961 ATAGTAAACTTAATTCACTGTTCCCATTGTTCTAAAGAATTTTTTTAAATAATGTTTCATTAAATCTTATGATTTAACCG
1041 TGCTTGCCCTTTTTGCCAGCTATGTGGCAGTTTACGGCAGAACTGCTGTCAGTGTGCTGGTAGCCCTCTATTCATCCCTC
1121 CTCAGAGCCCAGCTTCCAGAACTGCTATCACTGTGCTGGTAGCCCTCTGTATTCATCCCTCTTCAGAGCTCAGCTTCTGG
1201 TTGTATTCTCCATGAGTTTAATAATGACATGAAAAAATGTGGAAGCCGAGAGAGTAAAATACTCTGCCCTGTAAAAACAT
1281 GGAAGACATGCAAACAGAAAAAAAATAATTGTATTGTTTTAGATAATACTTAAGACAACTGTGAAACAACAAAAACACAA
1361 CTATTCCTTTGTGACCGATGAAGATAAAAAGAAATTCTGGTAAAGACGGGTATGCAGTTTTTTAAAATGGGTTAAGAAAT
1441 TGTTGCAGAAGAATTTCTAACATCTGAAAATGGTTTTATGTTTAAGAAGGATGGTCTGAATTGTGTACTAATAGCAAGGT
1521 ATAAGTTTGGTGTAGAGCCTATCCAGTAGCGTCCACTGTACCACTTTTAAGTAAGACTCAGTCCACAGAAGCTGGAAGAT
1601 TGCCTTCGCTTTAAATATCCTTTACCTTCTGCATTTGACACTCCTCCTGTTACTACATAGATTCCGGTCCCCAGAAGCAA
1681 TTTTACACTGGTACTAGAGCTTACCAGCCCCATTTAGTAATTTTTAATGGCTAGATGAGGTTTAACAAGAATATGAAAAG
1761 AAAAAAGAAAAAATATATTCATGAATGATAGGCGATGCCCATTCTTTCTCTCAAGCTAATGAAGTCCTATGGCATTCTAA
1841 CCACAACCCTCGGACAGACTCCTCCTATTCCTCCATGGCATTGTAACCACAACCCTCGGACAGACTCCTCCTATTCCTCC
1921 ATGGCATTGTAACCACAACCCTCGGACAGACTCCTCCTACTCCTCCATGGCATTGTAACCACAACCCTCGGACAGACTCC
2001 TCCTACTCCTCCATGGCATTGTAACCACAACCCTCGGACAGACTCCTCCTACTCCTCCATGGCATTGTAACCACAACCCT
2081 CGGACAGACTCCTCCTATTCCTCCATGGCATTGTAACCACAACCCTCGGACAGACTCCTCCTATTCCTCCATGGCATTGT
2161 AACCACAACCCTCGGACAGACTCCTCCTATTCCTCCATGGCATTGTAACCACAACCCTCGGACAGACTCCTATTCCTCCA
2241 TGGCATTGTAACCACAACCCTCGGACAGACTCCTCCTATTCCTCCATGGCATTGTAACCACAACCCTCGGACAGACTCCT
2321 TCTGTTCCTCCTTTCCTCGTCCTTCCCTGCTTTTCGTCCATTCAGCATATAGCTATTCAGTACTCCATTGAAGAAATTAT
2401 GCTAAGTGAGCAAAGCAACATAATTACTAAGAATTAATTCTGATTATTTGGCACTAGAGCCAACAGCAACCCCAGCACAG
2481 AGGAAAGTCGCTTTTTTTTCAAATGCATAAATTTAAAGTATGTATTTGCATGCAGTTTTAAATGGGAGGTATTTGTCATT
2561 GTGAAAAGCTGGGAATCTCAAACATAGTCAACTTAACTAAAAAGAAGCTAATACAGGTTGAGCATTCCTAATCCAAAAAT
2641 CCAGAATCCAAATTGCTCCAAAATCTGAAACTTTCTGAATGCTGACCTGATACTACAAGTAGAAAATTCCACATACAAGT
2721 ACTTAACACAAACTTTGTTTCATGCACAAACTACTAAAAATATTGTATAAAATTACCTTCAGGCAGTGTGTGTAGTTATA
2801 TATGAAACATGAATTTCATGTTTAGACTTGGGTCCATGCCCAAGATACCTCATTAGGTATCTGTAAATATCCGAAATCCA
2881 AAAAAAAGTCTGAAATCTGAAACACTTCTGGTCCCAAGCATTTCAGTAAGTGATGCTCAACCTGCGTAATGGTCTGCGGG
2961 CCAGTGCTCATTTTCTGCCTATGTTGTACATACTTTAAATTGTGTAAATTAAAAGTCAAAGCAAAGAGTCTATTTTTAAA
3041 GAAACTTACAATAATCTAAACATATACTTCTTATGATTATGAATCATCCTGCAAAGCTGAATGAAGAATTTTACCAAAAA
3121 TACAATGAATTAATCATATATTTGAGAGTCACAGTGATAGGTTCGACTATATTTTGACTGTTGTGTAGTGGCACCGTTTA
3201 GGTAGTATTGTTTCTGAGCATGGTGCTTTTTATACTTGAAATATATTTTTGCTTTATTTTTTATTGATATAATTATATTT
3281 GCACTAATGGCTTTCTGAAGAAAATATTATAGATGACATTTTTTGTATATATATTTATTAAGCTTGGGAACCTGGTCGCC
3361 CAGTGTTTTCTCTGGACAAATGTGAAACTGGATAAAGTATGGATAAAGTCTTGAGTTCCTCAGGGTAACTGTGTTGATGT
3441 CTCCCGTCCTCTTCAGTAAGGCTTGAATATGATTTTACTCATCATTGATTCTGCATAGTGTACCCAGCAAGACTTAGAAG
3521 GACACTGAACCTGTCAGAGATTTTAAGAGGCACATTTTAGTCACTTTGAATATGGTAGTGGTGGGCGCGGTGACTGAAGC
3601 CTGTAATCTCAGCACTTCGGGAGGCCAAGGCAAGCAGATCACGAGATCAGGAGTTTGAGGTTACAGTGAGCTGATCGCAC
3681 CACTGCACTGCAGCCTGGATGACAGAGTGAGACTTTCTTGGGAAAAAAAAAAATGACAGTGAAGCAGACTTTTAGAATCC
3761 GAGATGTCATTGCAGAATTATTGGTATAAAATTCAGCTGCAAAGTGAAGAAATTGAAATGGCCCACACGTTGATATCCTG
3841 TGGCAGGTTATACCCTTCATGTTAGCAAAGACGAAGCCACGTCGCTGTGTTAAGAGGGACAGGCTGGGCCGGCTGCAGCT
3921 GTAGTGGAAGTGAGGGACACAGGGAAGGAATGGGGAGCAGCAATTTGGGGACAGTAGACTGGAGTCACTTTCTGACTCAA
4001 AAAGGGTCAAGTACTTATTAAAAACTATCTTGGTTTTCTGTTCAGACTTAGGCTCATTTTGATCATTTTAAGGTCCCAGT
4081 TGTCAAAAATATCAAGTGAATTTGTCTCAGGTTTTCAGAAACAAAATTTACAGGAAGGAAGCAAAAGCCATGTCAGTAGC
4161 CTTGAGCTGACAGCTTTAAAGAAACTGGCAAACAGGTAGGTTGTCCTCATATAGATCCTTCCAGTATTCTGAAAAACATC
4241 CTTTTATTTCTTAAAACCAGTAACCCTTACATTTTTCCTATAGGATAGTTATTTTTGTTGAGATCAAATAGACATTCTAT
4321 AAATGTTATAAATTATGCTTGCAGTTACTCAGCCTATCTAGGCTTAAGGTTTATCAATATTTGAAGTTGAAACATCATCT
4401 TATGAGGTTTAGTTTTAGGAAGATAAATAAATATATCAAAGTATTTCATAAAGTTGTATCAATGTTCCTTCTAACATTAG
4481 AAGACTTACTGACTGAGGCCATCTGTGAACGACTAGGTGATCTCAGAATCCTTCCAGCTCTAATACCCTCTGACTAACAC
4561 TCACCCAGAATTGCTGTCTGTGCTGGCTGTGATCTGCCTCCAGGAGCATACGCCATCCTGCGTGCTGTGTCCATCACAGT
4641 GTCTGTGCTCGGTGCCTTACCACTGTCCGTGTCCTTGGACGCTGACTGGACAGAGAGGAGCCTGTCTCTCAGGGCACATG
4721 AGTCGTCGTGGCAGGAGGAGACGGGCCTCAGTCACAGTGTCACAGACCCTTGTCACAGTGGACACTAGTCATTCCTGCCA
4801 TGTCCTTGCAGCCCAGGAGGACTAAAAAGATTTTAATGAAGTCTGTGTTACTCATTCTGAAGAAAAGAACTTACCTGAGA
4881 GGAGTAATATTTTTTTAATATATATTGGGTCAGGGACAGGGATGGAGTGGTTGTTTTATGTTTACATTTTTAATAAGTAA
4961 AATAGAAGATTTAAGAACTAATATTTATGGTATTGAACTTTAAGTGTGATATATTCCTTAGAAAAACACAACTTTAATAA
5041 AAATGGAAACTAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uuUUCAUUAAUGUCAAAAa 5'
            ::|||  |:||||||| 
Target 5' acGGGTA--TGCAGTTTTt 3'
 1406 - 1422 153.00 -9.00
2 
miRNA  3' uuUUCAU---UA-----AUGUCAAAAa 5'
            |||||   ||     |:||||||| 
Target 5' taAAGTATGTATTTGCATGCAGTTTTa 3'
 2514 - 2540 153.00 -7.40
3 
miRNA  3' uuuUCAUU---AAUGUCAAAAa 5'
             |||||   ||||| |||| 
Target 5' accAGTAACCCTTACATTTTTc 3'
 4256 - 4277 136.00 -5.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN28713685 49 COSMIC
COSN30506809 50 COSMIC
COSN1083389 67 COSMIC
COSN30529342 74 COSMIC
COSN31605145 99 COSMIC
COSN23016313 102 COSMIC
COSN23016314 128 COSMIC
COSN30640558 163 COSMIC
COSN30129851 167 COSMIC
COSN30710162 218 COSMIC
COSN31778344 218 COSMIC
COSN20099629 236 COSMIC
COSN20090990 238 COSMIC
COSN28741428 241 COSMIC
COSN15023343 258 COSMIC
COSN1083387 270 COSMIC
COSN19283575 270 COSMIC
COSN25551560 749 COSMIC
COSN20099630 947 COSMIC
COSN20099631 992 COSMIC
COSN29562464 995 COSMIC
COSN17075710 1050 COSMIC
COSN20772860 1424 COSMIC
COSN22801331 1531 COSMIC
COSN29397369 1576 COSMIC
COSN20090992 1898 COSMIC
COSN21070948 1915 COSMIC
COSN19329021 1955 COSMIC
COSN32065475 2145 COSMIC
COSN24615421 2234 COSMIC
COSN29680336 2241 COSMIC
COSN28611011 2280 COSMIC
COSN7600591 2309 COSMIC
COSN25223822 3205 COSMIC
COSN9543920 3217 COSMIC
COSN16140279 3219 COSMIC
COSN31962223 3255 COSMIC
COSN5532214 3509 COSMIC
COSN24222983 3643 COSMIC
COSN2378196 3734 COSMIC
COSN14545410 3821 COSMIC
COSN20099635 3991 COSMIC
COSN16125440 3995 COSMIC
COSN17181728 4398 COSMIC
COSN20099636 4434 COSMIC
COSN31481893 4711 COSMIC
COSN31486765 4750 COSMIC
COSN14975127 4754 COSMIC
COSN31490137 4757 COSMIC
COSN31513935 4882 COSMIC
COSN8489043 4899 COSMIC
COSN30161115 4912 COSMIC
COSN31535148 4977 COSMIC
COSN22046884 4983 COSMIC
COSN1940550 5038 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1252942625 4 dbSNP
rs754757561 5 dbSNP
rs781133719 13 dbSNP
rs1318299602 18 dbSNP
rs1361715391 21 dbSNP
rs748177909 25 dbSNP
rs772819288 28 dbSNP
rs754672752 32 dbSNP
rs1233548122 34 dbSNP
rs770592771 35 dbSNP
rs759183986 38 dbSNP
rs764498888 40 dbSNP
rs1286726774 41 dbSNP
rs1189625194 42 dbSNP
rs780855280 45 dbSNP
rs372122129 48 dbSNP
rs749617090 49 dbSNP
rs1451922181 52 dbSNP
rs762419708 53 dbSNP
rs1269680257 54 dbSNP
rs552085523 64 dbSNP
rs1487577565 66 dbSNP
rs948132638 82 dbSNP
rs1241359208 85 dbSNP
rs369637343 92 dbSNP
rs1308706974 98 dbSNP
rs906675772 101 dbSNP
rs991576053 106 dbSNP
rs1027125833 126 dbSNP
rs73891808 128 dbSNP
rs1297440033 129 dbSNP
rs1031190125 132 dbSNP
rs983080663 133 dbSNP
rs908536446 141 dbSNP
rs760085355 164 dbSNP
rs1174294734 172 dbSNP
rs1406419194 173 dbSNP
rs1432798488 174 dbSNP
rs368807649 177 dbSNP
rs1201725709 181 dbSNP
rs557380137 186 dbSNP
rs1263123077 188 dbSNP
rs1305024195 189 dbSNP
rs200063860 193 dbSNP
rs944088234 195 dbSNP
rs185332919 197 dbSNP
rs189392011 209 dbSNP
rs1322433513 213 dbSNP
rs1283468144 214 dbSNP
rs1224832653 216 dbSNP
rs138895703 218 dbSNP
rs555036507 218 dbSNP
rs1228040451 228 dbSNP
rs573554503 229 dbSNP
rs534555995 230 dbSNP
rs1300834032 231 dbSNP
rs1320560215 231 dbSNP
rs541557252 235 dbSNP
rs879846074 235 dbSNP
rs1216907329 236 dbSNP
rs1407144219 236 dbSNP
rs932741794 237 dbSNP
rs749559608 238 dbSNP
rs1212491992 239 dbSNP
rs879576988 241 dbSNP
rs893672847 241 dbSNP
rs1021702126 242 dbSNP
rs1235586417 242 dbSNP
rs1254638517 243 dbSNP
rs945267178 249 dbSNP
rs1263376605 250 dbSNP
rs1482806459 252 dbSNP
rs1250246887 255 dbSNP
rs1315589025 255 dbSNP
rs1042346039 257 dbSNP
rs192960234 258 dbSNP
rs1186827285 261 dbSNP
rs1003174750 262 dbSNP
rs1383170509 263 dbSNP
rs1476784100 265 dbSNP
rs1169406077 267 dbSNP
rs1429369437 270 dbSNP
rs1415885636 275 dbSNP
rs1463545468 276 dbSNP
rs1173524066 278 dbSNP
rs558873122 279 dbSNP
rs1445687289 280 dbSNP
rs1358159565 282 dbSNP
rs953861474 285 dbSNP
rs1447792421 286 dbSNP
rs1299142847 287 dbSNP
rs1342976534 289 dbSNP
rs1398669907 290 dbSNP
rs1277710290 295 dbSNP
rs577325758 297 dbSNP
rs1220948990 299 dbSNP
rs1322980998 300 dbSNP
rs147127300 308 dbSNP
rs1019468143 309 dbSNP
rs1250572838 311 dbSNP
rs562573910 311 dbSNP
rs1311773035 312 dbSNP
rs1329717371 316 dbSNP
rs747995952 316 dbSNP
rs574230375 319 dbSNP
rs1163247500 321 dbSNP
rs541406439 324 dbSNP
rs972541111 328 dbSNP
rs1487303533 331 dbSNP
rs952922677 335 dbSNP
rs1269429867 336 dbSNP
rs772086126 347 dbSNP
rs1439117984 349 dbSNP
rs1478732908 350 dbSNP
rs772454878 357 dbSNP
rs1221727297 359 dbSNP
rs776122385 364 dbSNP
rs1015814414 366 dbSNP
rs1159678811 368 dbSNP
rs1237701005 368 dbSNP
rs371850668 368 dbSNP
rs1280424051 369 dbSNP
rs1241435844 372 dbSNP
rs559765965 373 dbSNP
rs1405590359 380 dbSNP
rs1368028632 382 dbSNP
rs114352458 384 dbSNP
rs376491000 389 dbSNP
rs796571112 390 dbSNP
rs1386132676 392 dbSNP
rs916528728 393 dbSNP
rs948170442 396 dbSNP
rs976756002 396 dbSNP
rs1198088251 397 dbSNP
rs1480443067 399 dbSNP
rs1270963594 401 dbSNP
rs921280163 404 dbSNP
rs796271979 414 dbSNP
rs1046434804 423 dbSNP
rs564228535 425 dbSNP
rs115455852 430 dbSNP
rs1282830836 430 dbSNP
rs531506244 431 dbSNP
rs906728135 432 dbSNP
rs1276941854 434 dbSNP
rs1430631529 434 dbSNP
rs201143085 434 dbSNP
rs935526551 435 dbSNP
rs1403451636 443 dbSNP
rs184171164 443 dbSNP
rs932709084 447 dbSNP
rs989588070 451 dbSNP
rs1052540384 455 dbSNP
rs915073127 456 dbSNP
rs1191478519 458 dbSNP
rs1475024720 464 dbSNP
rs945262143 466 dbSNP
rs1042620267 474 dbSNP
rs1440424497 475 dbSNP
rs1011572805 476 dbSNP
rs1021295588 483 dbSNP
rs889418492 489 dbSNP
rs1215550858 515 dbSNP
rs1290537398 524 dbSNP
rs906409531 531 dbSNP
rs939281531 565 dbSNP
rs1363314014 566 dbSNP
rs1272370083 567 dbSNP
rs549725235 568 dbSNP
rs1019353110 578 dbSNP
rs1054687535 581 dbSNP
rs769187302 583 dbSNP
rs1382487731 584 dbSNP
rs1218792468 586 dbSNP
rs894840470 601 dbSNP
rs1245601099 607 dbSNP
rs1335739144 609 dbSNP
rs1470341327 614 dbSNP
rs1180118490 615 dbSNP
rs1378023737 619 dbSNP
rs73213900 628 dbSNP
rs1048832018 646 dbSNP
rs777171284 650 dbSNP
rs886197880 654 dbSNP
rs1242289076 657 dbSNP
rs1392117010 657 dbSNP
rs1025894400 666 dbSNP
rs1004345754 673 dbSNP
rs765260412 684 dbSNP
rs984411317 686 dbSNP
rs1016196495 688 dbSNP
rs965628365 692 dbSNP
rs569358523 697 dbSNP
rs1316130406 708 dbSNP
rs1248569861 710 dbSNP
rs1384573597 711 dbSNP
rs762647831 713 dbSNP
rs1296033785 725 dbSNP
rs982061253 727 dbSNP
rs1354609388 732 dbSNP
rs1028309773 734 dbSNP
rs928082722 736 dbSNP
rs1164016788 740 dbSNP
rs79350590 758 dbSNP
rs1406061849 762 dbSNP
rs1052593289 768 dbSNP
rs1284540859 772 dbSNP
rs1481031837 779 dbSNP
rs1234649006 782 dbSNP
rs1358442150 796 dbSNP
rs1226521787 799 dbSNP
rs1490338477 809 dbSNP
rs989555642 810 dbSNP
rs1351878750 817 dbSNP
rs915294029 833 dbSNP
rs548597502 843 dbSNP
rs1222844408 847 dbSNP
rs1199914925 848 dbSNP
rs1280761916 855 dbSNP
rs1402497517 858 dbSNP
rs766146756 862 dbSNP
rs1303633293 865 dbSNP
rs1457007715 870 dbSNP
rs189399599 873 dbSNP
rs558067899 875 dbSNP
rs566447714 883 dbSNP
rs977925940 889 dbSNP
rs889480127 891 dbSNP
rs927798478 897 dbSNP
rs150914799 900 dbSNP
rs533810958 908 dbSNP
rs544019982 909 dbSNP
rs939267213 911 dbSNP
rs180975666 912 dbSNP
rs900959347 922 dbSNP
rs1260470466 926 dbSNP
rs993876560 932 dbSNP
rs1162753009 934 dbSNP
rs36003307 934 dbSNP
rs1025483407 939 dbSNP
rs1406667727 948 dbSNP
rs1413633950 954 dbSNP
rs952623972 955 dbSNP
rs1288098200 957 dbSNP
rs1046252475 959 dbSNP
rs1466229116 960 dbSNP
rs1454086306 970 dbSNP
rs868807411 971 dbSNP
rs916241514 981 dbSNP
rs1347185332 983 dbSNP
rs10662532 987 dbSNP
rs10662707 987 dbSNP
rs1398426997 988 dbSNP
rs1469406622 994 dbSNP
rs1202274035 998 dbSNP
rs1427233646 998 dbSNP
rs1005485385 1001 dbSNP
rs1023996353 1006 dbSNP
rs577487547 1007 dbSNP
rs1048716261 1010 dbSNP
rs1201384871 1013 dbSNP
rs886167646 1025 dbSNP
rs1263196983 1031 dbSNP
rs1224764324 1035 dbSNP
rs538421206 1040 dbSNP
rs556369266 1041 dbSNP
rs927966789 1047 dbSNP
rs901360519 1062 dbSNP
rs1318444854 1063 dbSNP
rs574192852 1066 dbSNP
rs376577448 1072 dbSNP
rs541568243 1076 dbSNP
rs184905964 1077 dbSNP
rs1010870323 1089 dbSNP
rs1257759763 1094 dbSNP
rs1171659938 1095 dbSNP
rs1430739092 1100 dbSNP
rs879023380 1103 dbSNP
rs1241655568 1107 dbSNP
rs1022734761 1109 dbSNP
rs1460616213 1109 dbSNP
rs1243334454 1115 dbSNP
rs966787491 1118 dbSNP
rs1444509097 1121 dbSNP
rs915427083 1122 dbSNP
rs1479339466 1128 dbSNP
rs946852811 1129 dbSNP
rs1050599737 1130 dbSNP
rs1185807350 1131 dbSNP
rs1244907657 1137 dbSNP
rs1257471492 1140 dbSNP
rs1383836768 1148 dbSNP
rs978608614 1151 dbSNP
rs944935356 1152 dbSNP
rs1040735216 1157 dbSNP
rs534490555 1159 dbSNP
rs960859423 1160 dbSNP
rs929723441 1162 dbSNP
rs1047228824 1163 dbSNP
rs1163381922 1167 dbSNP
rs1465361947 1173 dbSNP
rs888185140 1180 dbSNP
rs369396867 1181 dbSNP
rs916460798 1183 dbSNP
rs1023460062 1190 dbSNP
rs905158952 1199 dbSNP
rs1484007111 1200 dbSNP
rs6780757 1203 dbSNP
rs531541967 1204 dbSNP
rs1359810919 1206 dbSNP
rs1341095357 1219 dbSNP
rs1286229341 1233 dbSNP
rs907562396 1247 dbSNP
rs956677773 1248 dbSNP
rs940434838 1249 dbSNP
rs1411698541 1250 dbSNP
rs1364258797 1261 dbSNP
rs988264026 1263 dbSNP
rs1040566043 1268 dbSNP
rs901333677 1272 dbSNP
rs868640930 1281 dbSNP
rs1022827966 1289 dbSNP
rs1468261480 1298 dbSNP
rs934112589 1306 dbSNP
rs968150728 1306 dbSNP
rs1199140659 1311 dbSNP
rs549926283 1316 dbSNP
rs1473247758 1324 dbSNP
rs561910184 1325 dbSNP
rs763153989 1327 dbSNP
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rs1261572737 1371 dbSNP
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rs1261466294 1388 dbSNP
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rs1199604303 1398 dbSNP
rs1343704739 1400 dbSNP
rs1283286768 1401 dbSNP
rs566972816 1403 dbSNP
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rs6763543 1409 dbSNP
rs552302121 1423 dbSNP
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rs763836295 1437 dbSNP
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rs888227083 1475 dbSNP
rs1421222821 1486 dbSNP
rs1190766844 1490 dbSNP
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rs1262767380 1499 dbSNP
rs1210818261 1509 dbSNP
rs1296283326 1511 dbSNP
rs1359772854 1514 dbSNP
rs186976280 1521 dbSNP
rs1224144994 1529 dbSNP
rs1302727829 1551 dbSNP
rs377396906 1552 dbSNP
rs1430475397 1555 dbSNP
rs905001603 1556 dbSNP
rs1303217039 1559 dbSNP
rs1354871533 1562 dbSNP
rs1219175180 1576 dbSNP
rs1023439376 1578 dbSNP
rs951950865 1579 dbSNP
rs984697220 1581 dbSNP
rs1403387716 1584 dbSNP
rs556332078 1587 dbSNP
rs907532146 1588 dbSNP
rs940384577 1602 dbSNP
rs1414479550 1604 dbSNP
rs975780774 1608 dbSNP
rs139348624 1609 dbSNP
rs1431730296 1619 dbSNP
rs1193251672 1639 dbSNP
rs1381092374 1640 dbSNP
rs1441342289 1642 dbSNP
rs1156570056 1644 dbSNP
rs1338636978 1647 dbSNP
rs1449612560 1649 dbSNP
rs1010013705 1650 dbSNP
rs753653624 1652 dbSNP
rs535656881 1662 dbSNP
rs1049892125 1666 dbSNP
rs1460168668 1667 dbSNP
rs889985223 1679 dbSNP
rs1242715499 1681 dbSNP
rs534625323 1686 dbSNP
rs1444142568 1692 dbSNP
rs144450808 1695 dbSNP
rs1022290302 1696 dbSNP
rs968538186 1698 dbSNP
rs1044406092 1716 dbSNP
rs986197825 1728 dbSNP
rs1017797854 1730 dbSNP
rs902774487 1731 dbSNP
rs976229856 1734 dbSNP
rs553423930 1745 dbSNP
rs919537214 1752 dbSNP
rs1326820447 1756 dbSNP
rs75525718 1758 dbSNP
rs982894926 1761 dbSNP
rs1035047442 1766 dbSNP
rs1307487650 1767 dbSNP
rs1442476439 1768 dbSNP
rs1384858049 1769 dbSNP
rs1316891362 1777 dbSNP
rs146088946 1787 dbSNP
rs13064674 1793 dbSNP
rs1231213080 1794 dbSNP
rs557495040 1795 dbSNP
rs1023406808 1797 dbSNP
rs778422894 1798 dbSNP
rs1246145138 1800 dbSNP
rs951921629 1801 dbSNP
rs1220742418 1802 dbSNP
rs1487556146 1803 dbSNP
rs13092571 1808 dbSNP
rs1359157336 1811 dbSNP
rs1044766374 1820 dbSNP
rs576281716 1826 dbSNP
rs1380774123 1830 dbSNP
rs1213100161 1831 dbSNP
rs112675217 1835 dbSNP
rs60520451 1838 dbSNP
rs1459234559 1841 dbSNP
rs1002121118 1843 dbSNP
rs1176596855 1846 dbSNP
rs976129724 1849 dbSNP
rs1342384212 1852 dbSNP
rs143699444 1852 dbSNP
rs1165794774 1853 dbSNP
rs1406965814 1859 dbSNP
rs1407268405 1862 dbSNP
rs1406018153 1868 dbSNP
rs541247680 1869 dbSNP
rs1472927388 1881 dbSNP
rs1254668764 1883 dbSNP
rs1197888928 1888 dbSNP
rs953093661 1889 dbSNP
rs1490300839 1893 dbSNP
rs985899244 1894 dbSNP
rs911387425 1895 dbSNP
rs572778968 1898 dbSNP
rs1043905518 1899 dbSNP
rs924167323 1902 dbSNP
rs1350549732 1904 dbSNP
rs1402067477 1905 dbSNP
rs1344691619 1911 dbSNP
rs13066110 1912 dbSNP
rs13088070 1914 dbSNP
rs1174538559 1915 dbSNP
rs370871369 1915 dbSNP
rs1343670168 1927 dbSNP
rs111438051 1928 dbSNP
rs1158645317 1938 dbSNP
rs1457898561 1941 dbSNP
rs543304111 1944 dbSNP
rs1174968705 1945 dbSNP
rs1296864898 1951 dbSNP
rs1480410314 1952 dbSNP
rs1373063868 1954 dbSNP
rs527812533 1955 dbSNP
rs55644842 1961 dbSNP
rs1320407007 1970 dbSNP
rs55858257 1974 dbSNP
rs61791880 1981 dbSNP
rs1240058635 1987 dbSNP
rs1207703608 1992 dbSNP
rs1329286084 1997 dbSNP
rs1258769800 2001 dbSNP
rs1322742930 2003 dbSNP
rs1301828744 2007 dbSNP
rs1388364200 2010 dbSNP
rs1359604737 2024 dbSNP
rs552541050 2036 dbSNP
rs1320347304 2037 dbSNP
rs1391047106 2047 dbSNP
rs111624629 2053 dbSNP
rs570800764 2055 dbSNP
rs1469294206 2057 dbSNP
rs939214051 2063 dbSNP
rs1178853096 2082 dbSNP
rs1427178678 2094 dbSNP
rs1419208742 2098 dbSNP
rs59205573 2099 dbSNP
rs1465083494 2128 dbSNP
rs1249434400 2143 dbSNP
rs1201249558 2144 dbSNP
rs112979095 2145 dbSNP
rs1256590671 2174 dbSNP
rs1235285364 2175 dbSNP
rs1305601107 2176 dbSNP
rs1294613664 2180 dbSNP
rs1228817984 2188 dbSNP
rs1196982699 2190 dbSNP
rs1367623845 2190 dbSNP
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rs1402996133 2199 dbSNP
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rs1354412246 2216 dbSNP
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rs1254032812 2227 dbSNP
rs568436443 2233 dbSNP
rs535620059 2234 dbSNP
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rs1201624574 2251 dbSNP
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rs1273742231 2260 dbSNP
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rs550794502 2270 dbSNP
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rs539203681 2309 dbSNP
rs1432090672 2310 dbSNP
rs1216810341 2319 dbSNP
rs1272584835 2321 dbSNP
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rs1251060561 2351 dbSNP
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rs1289574371 2398 dbSNP
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rs201653127 2518 dbSNP
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rs750948021 2540 dbSNP
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rs777010923 2991 dbSNP
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rs745492286 3911 dbSNP
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rs1010865854 4000 dbSNP
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rs1000639839 4064 dbSNP
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rs768568533 4092 dbSNP
rs73891810 4093 dbSNP
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rs1476491207 4103 dbSNP
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rs987478209 4196 dbSNP
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rs954654883 4212 dbSNP
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rs80266114 4435 dbSNP
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rs1414252322 4468 dbSNP
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rs1207827701 4501 dbSNP
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rs1005744067 4511 dbSNP
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rs188729842 4622 dbSNP
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rs755163318 4651 dbSNP
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rs778706062 4670 dbSNP
rs1309304067 4671 dbSNP
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rs549055969 4681 dbSNP
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rs1356613722 4683 dbSNP
rs1315184196 4686 dbSNP
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rs1408324542 4698 dbSNP
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rs753294174 4715 dbSNP
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rs1295634002 4814 dbSNP
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rs756609168 4839 dbSNP
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rs1038562206 4858 dbSNP
rs546608722 4868 dbSNP
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rs1415012541 4891 dbSNP
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rs1468961374 4902 dbSNP
rs1170961109 4903 dbSNP
rs1355870553 4905 dbSNP
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rs376460745 4925 dbSNP
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rs192972823 4933 dbSNP
rs1005132440 4935 dbSNP
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rs1300804202 4951 dbSNP
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rs1295580854 4962 dbSNP
rs1353660120 4964 dbSNP
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rs1371070102 4972 dbSNP
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rs1455601171 4980 dbSNP
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rs536040652 4985 dbSNP
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rs1000275653 4993 dbSNP
rs1376203839 5003 dbSNP
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rs386670340 5015 dbSNP
rs1033474799 5025 dbSNP
rs758000835 5028 dbSNP
rs1454801602 5030 dbSNP
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rs1186678803 5041 dbSNP
rs559654891 5045 dbSNP
rs779740626 5045 dbSNP
rs1263031045 5046 dbSNP
rs958680196 5047 dbSNP
rs988578540 5050 dbSNP
rs1233142712 5051 dbSNP
rs1212934817 5053 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 89782.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065670. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' uuuucauuaAUGUCAAAAa 5'
                   |:||||||| 
Target 5' -------caUGCAGUUUUa 3'
 		1 - 12
Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions Prostate Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRX1760597. RNA binding protein: AGO2. Condition:AGO-CLIP-LNCaP_C ...

- Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al., 2016, Neoplasia (New York, N.Y.).

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' uuuucauuaAUGUCAAAAa 5'
                   |:||||||| 
Target 5' -------caUGCAGUUUUa 3'
 		1 - 12
Article - Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al.
- Neoplasia (New York, N.Y.), 2016
MicroRNA (miRNA) deregulation in prostate cancer (PCa) contributes to PCa initiation and metastatic progression. To comprehensively define the cancer-associated changes in miRNA targeting and function in commonly studied models of PCa, we performed photoactivatable ribonucleoside-enhanced cross-linking immunoprecipitation of the Argonaute protein in a panel of PCa cell lines modeling different stages of PCa progression. Using this comprehensive catalogue of miRNA targets, we analyzed miRNA targeting on known drivers of PCa and examined tissue-specific and stage-specific pathway targeting by miRNAs. We found that androgen receptor is the most frequently targeted PCa oncogene and that miR-148a targets the largest number of known PCa drivers. Globally, tissue-specific and stage-specific changes in miRNA targeting are driven by homeostatic response to active oncogenic pathways. Our findings indicate that, even in advanced PCa, the miRNA pool adapts to regulate continuing alterations in the cancer genome to balance oncogenic molecular changes. These findings are important because they are the first to globally characterize miRNA changes in PCa and demonstrate how the miRNA target spectrum responds to staged tumorigenesis.
LinkOut: [PMID: 27292025]
CLIP-seq Support 1 for dataset GSM1065670
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / 4-thiouridine, 3_ML_LG
Location of target site ENST00000330198.4 | 3UTR | CAUGCAGUUUUAAAUGGGAGGUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
UCEC -0.95 0.1 -0.500 0.33 3 Click to see details
STAD 0.889 0.15 1.000 0.5 3 Click to see details
LUSC 0.882 0.16 0.500 0.33 3 Click to see details
THCA 0.499 0.25 0.800 0.1 4 Click to see details
BLCA 0.636 0.28 0.500 0.33 3 Click to see details
HNSC -0.005 0.5 0.200 0.4 4 Click to see details
HNSC -0.005 0.5 0.200 0.4 4 Click to see details
HNSC -0.005 0.5 0.200 0.4 4 Click to see details
HNSC -0.005 0.5 0.200 0.4 4 Click to see details
HNSC -0.005 0.5 0.200 0.4 4 Click to see details
HNSC -0.005 0.5 0.200 0.4 4 Click to see details
HNSC -0.005 0.5 0.200 0.4 4 Click to see details
153 hsa-miR-548f-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT075032 DYNC1LI2 dynein cytoplasmic 1 light intermediate chain 2 2 2
MIRT076422 PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 2 2
MIRT077732 ZNF652 zinc finger protein 652 2 2
MIRT097425 JMY junction mediating and regulatory protein, p53 cofactor 2 2
MIRT099605 ID4 inhibitor of DNA binding 4, HLH protein 2 4
MIRT105530 ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 2 2
MIRT109834 MID1IP1 MID1 interacting protein 1 2 8
MIRT132952 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT134169 KLHL42 kelch like family member 42 2 4
MIRT138721 MPP5 membrane palmitoylated protein 5 2 2
MIRT187755 ESYT1 extended synaptotagmin 1 2 2
MIRT208054 LRRC58 leucine rich repeat containing 58 2 2
MIRT222029 PURB purine rich element binding protein B 2 2
MIRT243457 LMLN leishmanolysin like peptidase 2 2
MIRT266062 FJX1 four jointed box 1 2 6
MIRT279835 ZFP36L1 ZFP36 ring finger protein like 1 2 2
MIRT285122 TERF2IP TERF2 interacting protein 2 6
MIRT323906 TMEM245 transmembrane protein 245 2 2
MIRT325430 CKS2 CDC28 protein kinase regulatory subunit 2 2 2
MIRT338909 HMGN2 high mobility group nucleosomal binding domain 2 2 6
MIRT350498 MRGBP MRG domain binding protein 2 6
MIRT405877 CALM1 calmodulin 1 2 2
MIRT442081 NDRG1 N-myc downstream regulated 1 2 2
MIRT442371 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT442397 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT444255 INTS8 integrator complex subunit 8 2 2
MIRT444875 ISPD isoprenoid synthase domain containing 2 2
MIRT445407 PTCHD1 patched domain containing 1 2 4
MIRT445493 HMGN4 high mobility group nucleosomal binding domain 4 2 2
MIRT446136 ST6GAL2 ST6 beta-galactoside alpha-2,6-sialyltransferase 2 2 2
MIRT446261 GRAMD1C GRAM domain containing 1C 2 2
MIRT446353 EML6 echinoderm microtubule associated protein like 6 2 2
MIRT446403 SNX1 sorting nexin 1 2 2
MIRT446826 STK17A serine/threonine kinase 17a 2 2
MIRT447222 ABI2 abl interactor 2 2 2
MIRT447705 ERP44 endoplasmic reticulum protein 44 2 2
MIRT448248 ZNF774 zinc finger protein 774 2 2
MIRT448819 FKBP1A FK506 binding protein 1A 2 4
MIRT449060 ZNF558 zinc finger protein 558 2 2
MIRT449668 ZNF451 zinc finger protein 451 2 2
MIRT449974 ZNF555 zinc finger protein 555 2 2
MIRT450476 TRMT5 tRNA methyltransferase 5 2 4
MIRT450483 ACTR2 ARP2 actin related protein 2 homolog 2 2
MIRT467980 SKIL SKI like proto-oncogene 2 4
MIRT470733 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT475012 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT490478 FEM1C fem-1 homolog C 2 2
MIRT497368 DIRAS2 DIRAS family GTPase 2 2 2
MIRT497561 PRLR prolactin receptor 2 2
MIRT497943 ABCB7 ATP binding cassette subfamily B member 7 2 2
MIRT498014 ZBTB20 zinc finger and BTB domain containing 20 2 2
MIRT498206 ACVR2B activin A receptor type 2B 2 2
MIRT502637 DDX3X DEAD-box helicase 3, X-linked 2 8
MIRT505633 SLC16A1 solute carrier family 16 member 1 2 6
MIRT512261 ARPP19 cAMP regulated phosphoprotein 19 2 6
MIRT518247 SCIN scinderin 2 4
MIRT520483 TRIM13 tripartite motif containing 13 2 4
MIRT521196 SBNO1 strawberry notch homolog 1 2 6
MIRT522764 LARP1 La ribonucleoprotein domain family member 1 2 4
MIRT525021 ABHD13 abhydrolase domain containing 13 2 4
MIRT525100 FRK fyn related Src family tyrosine kinase 2 2
MIRT525268 CD226 CD226 molecule 2 4
MIRT528662 FUNDC2 FUN14 domain containing 2 2 2
MIRT529353 SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 2 2
MIRT529651 ZNF81 zinc finger protein 81 2 2
MIRT529815 TMLHE trimethyllysine hydroxylase, epsilon 2 2
MIRT530316 TNFRSF10D TNF receptor superfamily member 10d 2 2
MIRT532775 LDHD lactate dehydrogenase D 2 2
MIRT533888 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT535657 NLN neurolysin 2 4
MIRT536351 LEFTY1 left-right determination factor 1 2 2
MIRT538089 DGKE diacylglycerol kinase epsilon 2 2
MIRT538118 DDX6 DEAD-box helicase 6 2 2
MIRT538950 BMP2K BMP2 inducible kinase 2 2
MIRT539086 ARNTL aryl hydrocarbon receptor nuclear translocator like 2 4
MIRT539374 ADSS adenylosuccinate synthase 2 6
MIRT539860 DNTTIP2 deoxynucleotidyltransferase terminal interacting protein 2 2 4
MIRT539976 SPRY1 sprouty RTK signaling antagonist 1 2 2
MIRT541264 GPC4 glypican 4 2 4
MIRT543374 CYB5B cytochrome b5 type B 2 2
MIRT543472 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT543685 HHLA1 HERV-H LTR-associating 1 2 2
MIRT543877 SLC16A9 solute carrier family 16 member 9 2 2
MIRT544021 KLRC3 killer cell lectin like receptor C3 2 2
MIRT544119 TTLL11 tubulin tyrosine ligase like 11 2 4
MIRT545311 SPC25 SPC25, NDC80 kinetochore complex component 2 2
MIRT545769 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT545991 XKR4 XK related 4 2 2
MIRT546078 VEZF1 vascular endothelial zinc finger 1 2 2
MIRT546717 RNPS1 RNA binding protein with serine rich domain 1 2 4
MIRT548964 CCNT2 cyclin T2 2 2
MIRT552133 MED10 mediator complex subunit 10 2 2
MIRT553941 STARD3NL STARD3 N-terminal like 2 2
MIRT554148 SLX4 SLX4 structure-specific endonuclease subunit 2 2
MIRT555009 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT555495 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT555651 PHF12 PHD finger protein 12 2 2
MIRT557631 GJD3 gap junction protein delta 3 2 2
MIRT557989 FAM160B1 family with sequence similarity 160 member B1 2 2
MIRT558838 CDCA4 cell division cycle associated 4 2 4
MIRT563344 RPLP0 ribosomal protein lateral stalk subunit P0 2 2
MIRT563902 RAPH1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 2 2
MIRT564263 DEPDC1B DEP domain containing 1B 2 2
MIRT565516 SOX4 SRY-box 4 2 2
MIRT565847 SCML2 Scm polycomb group protein like 2 2 2
MIRT567174 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT573142 ABT1 activator of basal transcription 1 2 2
MIRT573248 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT573740 KHSRP KH-type splicing regulatory protein 2 2
MIRT573983 DDX21 DExD-box helicase 21 2 2
MIRT574478 RPS16 ribosomal protein S16 2 2
MIRT608343 ZRANB1 zinc finger RANBP2-type containing 1 2 2
MIRT609782 NHSL1 NHS like 1 2 2
MIRT612536 RSF1 remodeling and spacing factor 1 2 2
MIRT613193 CLOCK clock circadian regulator 2 2
MIRT617539 GRK4 G protein-coupled receptor kinase 4 2 2
MIRT617779 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT620252 PCK1 phosphoenolpyruvate carboxykinase 1 2 2
MIRT621740 TNPO2 transportin 2 2 2
MIRT628105 IGF2BP1 insulin like growth factor 2 mRNA binding protein 1 2 2
MIRT629471 CRLS1 cardiolipin synthase 1 2 6
MIRT638139 TTC26 tetratricopeptide repeat domain 26 2 2
MIRT641039 PITPNB phosphatidylinositol transfer protein beta 2 2
MIRT642453 CLUAP1 clusterin associated protein 1 2 2
MIRT643159 NCK1 NCK adaptor protein 1 2 2
MIRT643260 ZNF566 zinc finger protein 566 2 2
MIRT649827 LIPG lipase G, endothelial type 2 2
MIRT651199 ZNF280B zinc finger protein 280B 2 2
MIRT654633 PTAR1 protein prenyltransferase alpha subunit repeat containing 1 2 2
MIRT656633 LRRC15 leucine rich repeat containing 15 2 2
MIRT660588 APP amyloid beta precursor protein 2 2
MIRT660865 AFAP1 actin filament associated protein 1 2 2
MIRT664141 ATP6V1G3 ATPase H+ transporting V1 subunit G3 2 2
MIRT666130 SPATS2L spermatogenesis associated serine rich 2 like 2 2
MIRT666391 SHMT1 serine hydroxymethyltransferase 1 2 2
MIRT667143 NT5DC3 5'-nucleotidase domain containing 3 2 2
MIRT673834 SPPL2A signal peptide peptidase like 2A 2 2
MIRT675539 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT693450 PIK3CG phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma 2 2
MIRT694852 KRT80 keratin 80 2 2
MIRT696047 KCNK6 potassium two pore domain channel subfamily K member 6 2 2
MIRT696951 CERK ceramide kinase 2 2
MIRT697839 UBL3 ubiquitin like 3 2 2
MIRT700270 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT702733 INSIG1 insulin induced gene 1 2 2
MIRT705310 AVL9 AVL9 cell migration associated 2 2
MIRT705325 ATP2A2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 2 2
MIRT707735 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT711798 MLLT1 MLLT1, super elongation complex subunit 2 2
MIRT713736 SUCO SUN domain containing ossification factor 2 2
MIRT715766 SKA2 spindle and kinetochore associated complex subunit 2 2 2
MIRT719186 KCNS2 potassium voltage-gated channel modifier subfamily S member 2 2 2
MIRT719478 PECR peroxisomal trans-2-enoyl-CoA reductase 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-548f 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-548f-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-548f-3p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (WM266) (1uM)
hsa-miR-548f-3p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (WM266) (200nM)
hsa-miR-548f-3p Trametinib 11707110 NSC758246 approved sensitive High Melanoma cell line (WM266) (200nM)
hsa-miR-548f-3p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (WM266) (500nM)
hsa-miR-548f-3p Trametinib 11707110 NSC758246 approved sensitive High Melanoma cell line (WM266) (1uM)
hsa-miR-548f-3p Trametinib 11707110 NSC758246 approved sensitive High Melanoma cell line (WM266) (500nM)
hsa-miR-548f-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-548f-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-548f-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-548f-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-548f-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-548f-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-548f-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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