miRTarBase - #MIRT244626


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pre-miRNA Information
pre-miRNA hsa-mir-6833   
Genomic Coordinates chr6: 32179816 - 32179876
Description Homo sapiens miR-6833 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6833-5p
Sequence 6| GUGUGGAAGAUGGGAGGAGAAA |27
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs764873407 1 dbSNP
rs1232535042 3 dbSNP
rs574738502 14 dbSNP
Putative Targets

Gene Information
Gene Symbol PLAG1   
Synonyms PSA, SGPA, ZNF912
Description PLAG1 zinc finger
Transcript NM_001114634   
Other Transcripts NM_001114635 , NM_002655   
Expression
Putative miRNA Targets on PLAG1
3'UTR of PLAG1
(miRNA target sites are highlighted)		 
>PLAG1|NM_001114634|3'UTR
   1 GATTCTGGGACATGGATTCATTACAGAAATGTATGTGTAGCTGTGCCCTAGATGACCATTTTTATTTTAGTGCCTACTTT
  81 AAAACAGTATAAAAATTTCTGCTTTTGTATAATACAAATTTTCATTAAGCCAGTATAAAATAGAAACTAGCTTTTAAACT
 161 GAGCTTTGGAACCATTTGTGTTCAGTTAAGTTTACCTGGGTATTTTGTCCTGATTCACTGCCAATTGTCACATTTTAAGA
 241 CTTTTTTTTTTCCATATAGGAAAGCCATTATTAGTAGTAAACTTTTACAAATCCCATTTTCAAATTACTTTTAGATCTTA
 321 AAATTTTCATTTTTGTCTAATAACAGTGGCTCTACCTTTTGACATCTGGCTCATTAAAAAATTTAGCAATAGAATGTAAA
 401 TTGTATAAAAAGTTTGTGAATAACTCAAGGGTTTAAATTTTCTTACTAGCTTCTAAATGGATTAATAATCAAGTGCTTCA
 481 AATGAATTAAGAGTCCAGTTTCGGAAGATAATAAATGTTTGTTAGATACACCATAATTTCAGATCAGTATATTCTGAAGA
 561 CTCCCTGTTGTCTGGCTAAAATATTTGCCATCTTTATTATGAGCCTTTAAGGAAAACAAACCCTAAACACAAAGCATCAG
 641 TATTTATAGCAAAAAGAGACTCTGTTAGGTGACATGGCATTTCGTGTCACTTAATAGTTGGCCCTAAATTAGTACACAGG
 721 ATATTTTGTCGTGTTTCATCCTTCTTAACATGCTATCTTTTCATTTAATAATAGTAATAGTGTATGGCATTGGGGTCTTC
 801 AGAGTCGATATATAGGTAGATCTCTTTAGTCTTTTCCACCTTTCACATCCAAGGGGTGGGTCAAGTGCAGCCAGCAATTT
 881 ATTTTCATTGTTGGCCCACGGTTAGTCCATAATCTAGAGCCATTGTGGAACTGCAGCCATGAGGTGTGTTTATCCCACAG
 961 TGGATTGACTCAGCCTCTGTGGGTGACAGACTTCTAAGCAGGAAGATAGACGTGAAGCACATGGTTACATTTGGGAACTT
1041 GTGTAGGGATCATGGCCCCTGTAGCCAGGGTTAAAAACTGGACTTTTTAGAAGTAAAGTAAAAGCATATCGCTTATATCA
1121 TTTCTTGCTGAATTTGATATGTTTTTCTTTCCCTTAAGAATCAAAAGCAGAAAACAAAAACAACAGTCCTACTCCGATGT
1201 TATCTTTCTGATTCAATGTGAATCCATCTTTCCTTGCAATATTTTGGATGGAGAATTTGAAGTTAAATGCATTAGAAAAC
1281 TACCTGATGAACTACCACAAAGTTTTAAGTGACTAGAAATATATACAGTAAAATCCCACTTTCATGCATCTCTGGGAAAT
1361 GATAGGAGTATTGCAAATAAGTTGAGTTTGTAGAGGGTAACAAAGTAAAGTAAAACAAACCTATCTTGGTTAACATGAAA
1441 ATAACAATTGAGAATATATTATATTCACTGAATAATTATAGGCTTTTCCTCACATTAGACAACCAACATAATCTTCTTAA
1521 AGGTCTAATTAATATATTTTTCTAAGGGTCAGTTGGGACATTAACCTAAGAAACATATCTATTAAGCACTTGTTAACACC
1601 TTATTTTAGGACCCTTTCCGTTGGGGATGGGGGCAAGGGTGGGAGGTTTTTAGAAGAGTATATATCTCTTTAAAAAAAAA
1681 CAGAAAGAAAAATATTTCTGAGCACTCATTAGCCCTATATGGAAACTTCTTTCCTTTTTGTAGGGCCAGTTATCACTGCA
1761 GATTGCAATGTTTACCAAGAATTTCTAAAAATGAGTGCAGATTACTGAATATAATACATTATTTAAAATATTTGGGAGTA
1841 GTATAATTTGTGGAGAAATGTAAATTGTAATAATGTAAATGGGGGCTTCAATATATATATATAATACACACACACACACA
1921 CATGCACACATACCGCACTTCATAGAATCAAAGTTGCTCTCTGAAGGAGCTTTGGCTCCTGATATTTTATCATGCTCCTA
2001 TATTTTTTTAATCCTTGGAGCAGTAGTTTTTATACTTATGTATTTAAATTTTATTATGAAAAATTACATTTATTAAAAAA
2081 GTGTGTTCCAAAGGCATTAAAATTATATATGTTAATAAGGAAGTACATTTTTAAATTTTTCAAACTGCTCCTAGCTTTTG
2161 ATTAGGAGAATATTTTTTCTGAAAGTAGGCTTTTCGCTCTGCTTCATTACTGCTTCCTTTAGTTTCTATGAAACAGATTG
2241 CTTACCTAAATCTTTAGTTGAATGATTAGTGTTCAATATTGCTTTAATCACCATATAAAAGGAAAAAAATTGGTGACAGA
2321 GCACAAATAGAAAACCTATTTTTAAATAGAAATCACAAATAGCAAGTGTGGAAGCACTACTTTATTCTGTTTAAAATGTA
2401 CTTAAGAAGTCATCAAATTAGTGAACTGAGACATTGGCCTTAGTAGGCTGTATTCACTGCTAATTTAAAAAAGGGAGTAC
2481 CAGGATTTATTAAGTAAAGCATTTTGGAAATGGGGAATAGCGCCATATATGTATGTATGTGTATGTGTGTGTGTGTGTGT
2561 GTATATATACACACACACACACATACTTAAATCTTGCCCTGCATGAAATTCAAATACATGGAGGCACATCTTCAGGGCAC
2641 CAGTGTTAAAATTTTGGAGTCTTAATTTTCATGTGTACACCTCTTTGCCTGTTCCCACCCCCAGACTTGAAATAACACTT
2721 CAGAGTAAGAGGGAATTCAGCTAATTTGTTTTTAAAATTGACTGTAGTGGTCACTAAACCCTTTTTGAGAGAATTTCTAT
2801 TAAAGATGAGGCAGACTCGCTTATTTGAATTGCACAATGTTCTAACAAGGATGTAACACAGAATTGGCTTTTTTTTCCCT
2881 AGAAAAAGATTGTTTGTTTCTATGTCAACTAGATATGATTAAAAATAAGTATTGCCAATGCTGTTTTCATTCTCTAGTGG
2961 CCAGAATCATTATCCTTGAAATTTCTGGTAGTGCCTTAGCTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAGGGATTAA
3041 CATTAAATAAAAGTAGTTTAGAATTTGGGCCTCAGACAAGATATTGAACCTCATTCAGTTTCACTTCCACATGTATGTAC
3121 AAGTTAGGTCACCAAACACGGAAGTGTGAGTGTGGAAGGATCTTGGCACTGTAAGCAATGCTATCCATTGATGTATACAA
3201 GTACCTTTATAGTTATCGATCACTGTTAAAACTTTCATTTTAAAATCCTATTACCAAGTTCAGTTTTTTAAAACTTCAAT
3281 TGTCCTGGCTGATTATGCATCACTCTGTGTGCAACTTTTTTATTTCATTTAGTGTTTCTTTCAAGCTGTGTATTTTTGCC
3361 TATTTGTTGCTTGTGCTTTATTTTTCTTAGTCATTTGTGGAATATAGTGATATATTGTGTTAATTTGGACAGTAGCGGTT
3441 TTTAAAAACCATATACTGACTGAAACATGAGCCAGAGCCGATTGCTTTATTAAGCTAATAATGAATGTTAAAGAGTACAT
3521 ATTTTCAGGATCGTTCATCTAGTGAGCAATACACATATTATAGGCCAATATTTTTTTAAAAAATAGAGCTTGGTCAACCT
3601 CTATACTACACATATTACAAGATATAGCACTTTCAAAATGAATCTAAACCTTTACAGAAACTTTCTTATAGGTTATGCCT
3681 TTTATTTTAAGACTTATTATAATTCAAGTGCCATTAGATGATATATATGTAGGCCTTTGATATATAATGCTTTGTGTACA
3761 AAAATGGTAGATGGTATTTTAAACAGGTACATTTTTACAGTGTTTTCTTATCAATTTGCTATATTGCACAGAATCAGTGT
3841 GTGTCTTTTCATAAGGTTTTACAATGGTTTATTTTTTTACAAGGTTTACGTGTCTCAAAGCACACTGTCTTCCCAGTACG
3921 TAAGTTAAAAAATACCAGTTCACCCAAGTTGCTTCTAGCCTACTGAGATCCATGTGACATTGGAGGAGATCTTTTAAATG
4001 TTTAGTATTCGTCATTAGCAATGGCTGGCTGTTAGTTCTGGTAAATGTGTGCCTAAGTTGAATTTGTCTTGTTTTTCTCA
4081 CACTGTGTCAGCAGCCATGTCTACAACACAGATAAGTCTGTTGTGATCACATAGATCTACATAAGTTGTGCAGTTTTGTG
4161 CTAAAAACCCATAGGGAGCTCCTTTGGGATCATAGAAAAGAAGATCATGCAACCAGCATTGGTGAAGGCACACTCAGATT
4241 GCACTTAGGGCCTTTCTATGATGTTGTCAACCCTCTGAGGATGGAAGGCAGTGTCTTTTGATGTTATCTAGCCTAGAAAT
4321 GACACAGAACTATTGCTAATGTATAAAACACTTCATTATATAAGCTTCAGTGGTACAGATGAACCAGAATGAATGTTTAT
4401 CTTCTCAGAAACACTCCTTCAATATTATATTGGATCATGCTGCTAATGTAACTTGGGCTACAACTCTTCATGGTGCTACA
4481 AACTTCTCTGTCTCATTCAGTCGTATTTTTTTATCCATAGAAAAAGGACTACATTAGGTGTAAAAGTGTACAATATATTT
4561 TTATACTGTGACTTAATTTGTCATTAACAAACTTTTACACCACCACAATGTATTCATGTGCACTTGCAAAAGGAGATCTC
4641 GGACATGCAAATGTTACCAGAACAAACCCAGCTTTTGTCCACAAGGTGACTGTAACTCAGAATGGAAAGTGGGCTTTATA
4721 ATAGGGTGTGGAGTGAAGAACATGCTGTATGTTACTAACAGCCCTTTGAATTTAACAAAAACTGGGAATCCATTAGGAAA
4801 CGGATTGCATCATACCTGAACATAAGCTGGACTGCTGAAATTGTATTTTTAGCTAATGAAAAAGTGTTTGGACTAGTACT
4881 CTAAAAATGTTCTAATGATAAAGTTTTGAGTCAAAATAGAAAAGAAAAAAATCTGCATTCCAGGCCGAATTTTGTATATT
4961 TTTATTGCATTTAAAATTGCTATTCTGTAATATTGGGAAATCAAGTGGCTTATCATGTATATCGTGTACTTAAAATGTAT
5041 TCACAAACTACTGTTGTATTTGTATAAAATATAGACAAAGATCATATTTTTTGTGTGTGTATAAGCTCTGTAAAATAGCA
5121 ATCACATTATGAAGCTGCAGTGATACTACATTTTAAACATTCACATCCAAAGAAGCAGACTATTTATTGTCCATATACCA
5201 GATTTAAAATATTAATTTGCTGCTAATTAAATAATAGTACTGCAGCTTCTTGTGGCCTACAGTGTTATGTTTGCTGTAAG
5281 AATAAGATATGTGAATTCCACAAAATATATGAATAAAATTATAGAATGGCTTTA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' aaaGAGGAGGGUA----GAAGGUGUg 5'
             ||| |:| :|    |||||||| 
Target 5' aacCTCATTCAGTTTCACTTCCACAt 3'
 3087 - 3112 157.00 -17.70
2 
miRNA  3' aaAGAGGAGGGUAGAAGGUGUg 5'
            ||| :|:||| |||:|||| 
Target 5' agTCT-TTTCCACCTTTCACAt 3'
 828 - 848 155.00 -19.50
3 
miRNA  3' aaagaGGAGGGUAGAAGGUGUg 5'
               |:|::: |:|||||:| 
Target 5' taagaCTTTTTTTTTTCCATAt 3'
 236 - 257 141.00 -12.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN510063 19 COSMIC
COSN30109995 31 COSMIC
COSN5865225 32 COSMIC
COSN31550831 33 COSMIC
COSN30103325 36 COSMIC
COSN2281276 39 COSMIC
COSN26989305 56 COSMIC
COSN31529263 66 COSMIC
COSN30100442 76 COSMIC
COSN31542155 99 COSMIC
COSN20123585 103 COSMIC
COSN1366243 242 COSMIC
COSN16963509 344 COSMIC
COSN9661385 501 COSMIC
COSN20244098 502 COSMIC
COSN5684209 832 COSMIC
COSN17827170 1012 COSMIC
COSN17182765 1193 COSMIC
COSN28541439 1196 COSMIC
COSN30172842 1493 COSMIC
COSN31549555 1540 COSMIC
COSN20822952 1573 COSMIC
COSN31557544 1574 COSMIC
COSN31486924 1620 COSMIC
COSN29607803 1671 COSMIC
COSN30539071 1671 COSMIC
COSN4940734 1697 COSMIC
COSN31523552 1843 COSMIC
COSN16296047 1905 COSMIC
COSN20105503 1905 COSMIC
COSN28152407 1906 COSMIC
COSN31546676 2139 COSMIC
COSN31547888 2195 COSMIC
COSN31568488 2226 COSMIC
COSN31522014 2302 COSMIC
COSN26174914 2303 COSMIC
COSN31962962 2355 COSMIC
COSN9661383 2356 COSMIC
COSN26581579 2483 COSMIC
COSN31540918 2521 COSMIC
COSN31514783 2543 COSMIC
COSN31535855 2543 COSMIC
COSN29743145 2544 COSMIC
COSN31569273 2553 COSMIC
COSN30175289 2559 COSMIC
COSN28671911 2561 COSMIC
COSN8092111 2563 COSMIC
COSN30176746 2568 COSMIC
COSN28106721 2569 COSMIC
COSN31518509 2570 COSMIC
COSN21627586 2604 COSMIC
COSN31570706 2683 COSMIC
COSN31563318 2702 COSMIC
COSN29665705 2752 COSMIC
COSN31491210 2754 COSMIC
COSN31547126 2821 COSMIC
COSN9661382 2859 COSMIC
COSN20855198 2934 COSMIC
COSN31532475 3007 COSMIC
COSN31561905 3032 COSMIC
COSN26574036 3033 COSMIC
COSN9661381 3211 COSMIC
COSN31568475 3217 COSMIC
COSN31483073 3261 COSMIC
COSN30165088 3307 COSMIC
COSN31549556 3338 COSMIC
COSN30169605 3400 COSMIC
COSN31778698 3436 COSMIC
COSN30543346 3437 COSMIC
COSN30162406 3480 COSMIC
COSN30544485 3577 COSMIC
COSN26589364 3578 COSMIC
COSN31523560 3648 COSMIC
COSN2281275 3709 COSMIC
COSN4940733 3739 COSMIC
COSN31547104 3750 COSMIC
COSN21520082 3780 COSMIC
COSN6699965 3839 COSMIC
COSN31519048 3845 COSMIC
COSN20105500 3871 COSMIC
COSN26550803 3903 COSMIC
COSN31548709 3905 COSMIC
COSN17078614 4118 COSMIC
COSN23582919 4144 COSMIC
COSN23066532 4200 COSMIC
COSN21143837 4224 COSMIC
COSN17182034 4264 COSMIC
COSN24302584 4322 COSMIC
COSN27776282 4323 COSMIC
COSN2281274 4425 COSMIC
COSN9661380 4502 COSMIC
COSN19330471 4505 COSMIC
COSN31550843 4550 COSMIC
COSN30543172 4797 COSMIC
COSN27073150 4897 COSMIC
COSN31539657 4928 COSMIC
COSN31529840 4962 COSMIC
COSN31517917 5023 COSMIC
COSN22109803 5024 COSMIC
COSN31531346 5064 COSMIC
COSN31544355 5108 COSMIC
rs34715615 3871 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs759676950 2 dbSNP
rs774529289 5 dbSNP
rs1372913133 6 dbSNP
rs1164267320 8 dbSNP
rs770946747 12 dbSNP
rs534097674 15 dbSNP
rs1396820444 19 dbSNP
rs1357819187 27 dbSNP
rs1430765797 30 dbSNP
rs904239542 30 dbSNP
rs754956552 32 dbSNP
rs764795534 35 dbSNP
rs768369873 41 dbSNP
rs1010292003 44 dbSNP
rs1188878067 45 dbSNP
rs1306238253 46 dbSNP
rs746870540 48 dbSNP
rs1213365599 58 dbSNP
rs1442779392 71 dbSNP
rs1299685771 82 dbSNP
rs892730014 87 dbSNP
rs1227386891 89 dbSNP
rs1315380704 92 dbSNP
rs1361126685 96 dbSNP
rs544620120 107 dbSNP
rs1273237996 108 dbSNP
rs1307449996 118 dbSNP
rs575754603 125 dbSNP
rs1205768541 130 dbSNP
rs565363193 133 dbSNP
rs1040631443 135 dbSNP
rs1440434087 137 dbSNP
rs1369062735 140 dbSNP
rs545513736 154 dbSNP
rs1447278416 159 dbSNP
rs1446637664 162 dbSNP
rs1166827917 165 dbSNP
rs573329399 168 dbSNP
rs553547953 174 dbSNP
rs1410473812 176 dbSNP
rs911820184 177 dbSNP
rs1357349633 183 dbSNP
rs1447082505 184 dbSNP
rs1337116642 188 dbSNP
rs1384589584 190 dbSNP
rs986414594 198 dbSNP
rs944938890 199 dbSNP
rs910759541 202 dbSNP
rs1215812018 217 dbSNP
rs1050544914 220 dbSNP
rs146219331 224 dbSNP
rs573999721 227 dbSNP
rs1264100604 236 dbSNP
rs1462840082 243 dbSNP
rs75628621 245 dbSNP
rs60449229 246 dbSNP
rs1188337941 252 dbSNP
rs1241597508 252 dbSNP
rs57439758 252 dbSNP
rs796699592 252 dbSNP
rs1423025997 266 dbSNP
rs1239643362 273 dbSNP
rs1180854764 281 dbSNP
rs962770461 282 dbSNP
rs1455324102 283 dbSNP
rs1015664726 285 dbSNP
rs1326644105 288 dbSNP
rs920635386 290 dbSNP
rs982964020 303 dbSNP
rs972105350 308 dbSNP
rs754010470 318 dbSNP
rs1366149501 329 dbSNP
rs971940548 346 dbSNP
rs1024564867 350 dbSNP
rs1326014291 360 dbSNP
rs1207210431 361 dbSNP
rs1283894779 363 dbSNP
rs74568212 372 dbSNP
rs1218079514 373 dbSNP
rs1245005869 379 dbSNP
rs570941502 383 dbSNP
rs141959330 390 dbSNP
rs999792696 396 dbSNP
rs1157757035 403 dbSNP
rs1385268683 403 dbSNP
rs902952377 405 dbSNP
rs1041414049 407 dbSNP
rs1233682101 410 dbSNP
rs1348734759 416 dbSNP
rs572006436 428 dbSNP
rs1311783081 431 dbSNP
rs1226989306 435 dbSNP
rs1279298326 436 dbSNP
rs1351700612 440 dbSNP
rs1224585057 461 dbSNP
rs761292017 466 dbSNP
rs1225623655 487 dbSNP
rs1372317633 491 dbSNP
rs999993007 501 dbSNP
rs968514424 502 dbSNP
rs565702252 503 dbSNP
rs1223308563 505 dbSNP
rs1271028331 511 dbSNP
rs374933271 524 dbSNP
rs534374241 524 dbSNP
rs1009973846 529 dbSNP
rs75384951 531 dbSNP
rs941314945 533 dbSNP
rs529154613 545 dbSNP
rs563571226 553 dbSNP
rs1311692179 556 dbSNP
rs773730605 558 dbSNP
rs1304405300 561 dbSNP
rs867486724 578 dbSNP
rs1432360486 583 dbSNP
rs908637277 588 dbSNP
rs767825503 594 dbSNP
rs982828173 600 dbSNP
rs1444814770 610 dbSNP
rs971631019 618 dbSNP
rs917389898 620 dbSNP
rs193197511 621 dbSNP
rs1418203406 624 dbSNP
rs1407704352 639 dbSNP
rs991777462 644 dbSNP
rs187474696 650 dbSNP
rs1439411934 661 dbSNP
rs1175849714 666 dbSNP
rs1484494364 668 dbSNP
rs149893654 674 dbSNP
rs1242196904 675 dbSNP
rs1444824016 683 dbSNP
rs183507966 684 dbSNP
rs752821516 694 dbSNP
rs538130901 697 dbSNP
rs1167919043 700 dbSNP
rs999825446 711 dbSNP
rs1288311526 715 dbSNP
rs1335106915 728 dbSNP
rs535270482 730 dbSNP
rs930779272 731 dbSNP
rs573297706 733 dbSNP
rs1317267376 738 dbSNP
rs115512007 740 dbSNP
rs753293903 744 dbSNP
rs1226780079 747 dbSNP
rs940783475 750 dbSNP
rs917292027 755 dbSNP
rs1198556627 769 dbSNP
rs549417499 773 dbSNP
rs1292563496 775 dbSNP
rs1412907588 782 dbSNP
rs1361879759 783 dbSNP
rs1427473535 784 dbSNP
rs1193251303 787 dbSNP
rs1374190676 787 dbSNP
rs1463941742 788 dbSNP
rs958615898 792 dbSNP
rs1174752116 795 dbSNP
rs1289007440 797 dbSNP
rs927173126 803 dbSNP
rs1339018939 806 dbSNP
rs140197300 807 dbSNP
rs1381769549 810 dbSNP
rs1296349081 812 dbSNP
rs1157319308 813 dbSNP
rs1328154010 822 dbSNP
rs1425960974 824 dbSNP
rs1419085637 827 dbSNP
rs1324090010 828 dbSNP
rs996000934 828 dbSNP
rs1474547315 832 dbSNP
rs968983357 842 dbSNP
rs557213685 843 dbSNP
rs537374458 856 dbSNP
rs577187758 859 dbSNP
rs557748001 869 dbSNP
rs941345973 872 dbSNP
rs1430819720 877 dbSNP
rs190913752 883 dbSNP
rs1224105665 892 dbSNP
rs57103486 899 dbSNP
rs1343692783 909 dbSNP
rs950157372 910 dbSNP
rs1289538513 919 dbSNP
rs185367313 923 dbSNP
rs1302538266 925 dbSNP
rs1346050300 933 dbSNP
rs1225161461 944 dbSNP
rs763582058 946 dbSNP
rs995083040 947 dbSNP
rs1381187032 960 dbSNP
rs899369678 964 dbSNP
rs1489674363 968 dbSNP
rs1036524663 983 dbSNP
rs1359384035 991 dbSNP
rs1294894028 996 dbSNP
rs940782184 1003 dbSNP
rs1202081795 1008 dbSNP
rs1395657198 1011 dbSNP
rs1418729145 1012 dbSNP
rs1164740786 1021 dbSNP
rs745756342 1023 dbSNP
rs535635796 1024 dbSNP
rs781309525 1044 dbSNP
rs569895037 1046 dbSNP
rs954634959 1048 dbSNP
rs1427958533 1052 dbSNP
rs979107752 1053 dbSNP
rs1372255777 1055 dbSNP
rs947320004 1057 dbSNP
rs1193118854 1065 dbSNP
rs1469124784 1066 dbSNP
rs1356795363 1068 dbSNP
rs550071782 1093 dbSNP
rs563309254 1108 dbSNP
rs533282906 1110 dbSNP
rs913090600 1111 dbSNP
rs557237500 1112 dbSNP
rs1231669456 1116 dbSNP
rs1251852926 1116 dbSNP
rs571511725 1118 dbSNP
rs1178119628 1119 dbSNP
rs1252981210 1120 dbSNP
rs965101688 1124 dbSNP
rs1442967435 1127 dbSNP
rs1037663630 1137 dbSNP
rs1004798042 1139 dbSNP
rs1426476574 1141 dbSNP
rs1019297983 1162 dbSNP
rs887128631 1168 dbSNP
rs1305237915 1172 dbSNP
rs1462349055 1181 dbSNP
rs1299638591 1186 dbSNP
rs1302849242 1189 dbSNP
rs1380160650 1195 dbSNP
rs114284204 1196 dbSNP
rs1315147810 1200 dbSNP
rs151081651 1202 dbSNP
rs1212282853 1207 dbSNP
rs895895224 1216 dbSNP
rs1307397913 1217 dbSNP
rs1026606266 1224 dbSNP
rs73594274 1225 dbSNP
rs1260345906 1230 dbSNP
rs1439202878 1232 dbSNP
rs1460165572 1236 dbSNP
rs937549400 1248 dbSNP
rs1243969316 1267 dbSNP
rs1473848191 1272 dbSNP
rs1184829822 1274 dbSNP
rs1418762489 1274 dbSNP
rs73594272 1278 dbSNP
rs1461972402 1292 dbSNP
rs1403556069 1294 dbSNP
rs1469099380 1299 dbSNP
rs1371400076 1311 dbSNP
rs1015512304 1312 dbSNP
rs1407818140 1322 dbSNP
rs1269043256 1342 dbSNP
rs979011808 1343 dbSNP
rs946284043 1347 dbSNP
rs142929953 1348 dbSNP
rs1175601363 1362 dbSNP
rs1005030012 1368 dbSNP
rs1444310281 1379 dbSNP
rs11993194 1381 dbSNP
rs74854827 1386 dbSNP
rs895919250 1391 dbSNP
rs1057264947 1394 dbSNP
rs1213771324 1397 dbSNP
rs778992271 1403 dbSNP
rs1241542396 1405 dbSNP
rs937389445 1406 dbSNP
rs1195843918 1414 dbSNP
rs1454827470 1415 dbSNP
rs905899253 1420 dbSNP
rs1480016922 1421 dbSNP
rs1176849530 1423 dbSNP
rs1431019679 1433 dbSNP
rs1398546653 1447 dbSNP
rs563560185 1450 dbSNP
rs1317041791 1476 dbSNP
rs1252631762 1479 dbSNP
rs1432279563 1480 dbSNP
rs987556481 1481 dbSNP
rs1300646832 1488 dbSNP
rs1344146334 1489 dbSNP
rs1043052288 1493 dbSNP
rs1029163561 1503 dbSNP
rs947299315 1504 dbSNP
rs1347422697 1514 dbSNP
rs1222219945 1516 dbSNP
rs913108972 1531 dbSNP
rs15584 1536 dbSNP
rs543672619 1542 dbSNP
rs989068060 1556 dbSNP
rs1195146178 1557 dbSNP
rs1218859070 1560 dbSNP
rs943844106 1561 dbSNP
rs1266736838 1573 dbSNP
rs912377692 1577 dbSNP
rs1479656353 1581 dbSNP
rs182635843 1582 dbSNP
rs953788245 1587 dbSNP
rs919594625 1588 dbSNP
rs1248183328 1589 dbSNP
rs1468288685 1596 dbSNP
rs973727835 1600 dbSNP
rs139723624 1609 dbSNP
rs1408243769 1609 dbSNP
rs755266261 1612 dbSNP
rs1364284707 1619 dbSNP
rs541017265 1620 dbSNP
rs1304144784 1637 dbSNP
rs1241930903 1639 dbSNP
rs1004691959 1643 dbSNP
rs1333122543 1646 dbSNP
rs1440454253 1651 dbSNP
rs1330048488 1662 dbSNP
rs1005126780 1680 dbSNP
rs199621845 1681 dbSNP
rs767723499 1691 dbSNP
rs960217756 1692 dbSNP
rs886367541 1694 dbSNP
rs1358662580 1698 dbSNP
rs1291935574 1705 dbSNP
rs1435920193 1708 dbSNP
rs1180791272 1712 dbSNP
rs745969739 1713 dbSNP
rs1233138688 1720 dbSNP
rs1441112715 1729 dbSNP
rs1035855218 1740 dbSNP
rs1001651634 1742 dbSNP
rs905912217 1744 dbSNP
rs1164408336 1748 dbSNP
rs1393489281 1768 dbSNP
rs1394601870 1770 dbSNP
rs1408613740 1778 dbSNP
rs1024857081 1787 dbSNP
rs1377957220 1792 dbSNP
rs1014671964 1795 dbSNP
rs1471314997 1797 dbSNP
rs1364157928 1800 dbSNP
rs571987335 1802 dbSNP
rs1043453428 1807 dbSNP
rs1267194893 1812 dbSNP
rs1337329641 1829 dbSNP
rs1195037350 1835 dbSNP
rs1056317018 1842 dbSNP
rs1417174507 1855 dbSNP
rs1011552661 1859 dbSNP
rs937413596 1875 dbSNP
rs904723623 1876 dbSNP
rs1444767920 1879 dbSNP
rs1188983584 1883 dbSNP
rs753838503 1884 dbSNP
rs1043224918 1889 dbSNP
rs1474686051 1889 dbSNP
rs1167714659 1890 dbSNP
rs1401398757 1890 dbSNP
rs1467511163 1891 dbSNP
rs1335043298 1892 dbSNP
rs1405590083 1895 dbSNP
rs1485045759 1899 dbSNP
rs1226530430 1904 dbSNP
rs1270555312 1905 dbSNP
rs1277644076 1907 dbSNP
rs946190565 1909 dbSNP
rs1221451719 1910 dbSNP
rs1262165610 1915 dbSNP
rs200260560 1922 dbSNP
rs891719089 1922 dbSNP
rs145284198 1923 dbSNP
rs1491080904 1923 dbSNP
rs555036795 1923 dbSNP
rs573586591 1923 dbSNP
rs987702825 1923 dbSNP
rs1491339905 1924 dbSNP
rs1280443789 1926 dbSNP
rs1238802527 1928 dbSNP
rs933022279 1930 dbSNP
rs146386822 1935 dbSNP
rs780132826 1938 dbSNP
rs1298795909 1940 dbSNP
rs974521188 1942 dbSNP
rs963139369 1949 dbSNP
rs943956888 1950 dbSNP
rs1282346096 1951 dbSNP
rs1311214886 1959 dbSNP
rs191182522 1965 dbSNP
rs1385963680 1974 dbSNP
rs983289412 1977 dbSNP
rs1460085884 1978 dbSNP
rs535566137 1981 dbSNP
rs781384987 1985 dbSNP
rs950490917 1988 dbSNP
rs1157733331 1989 dbSNP
rs1489531926 1997 dbSNP
rs1025349711 2010 dbSNP
rs1197737890 2010 dbSNP
rs1049518075 2013 dbSNP
rs1013495469 2016 dbSNP
rs932407669 2017 dbSNP
rs919664932 2039 dbSNP
rs1362263456 2051 dbSNP
rs960343265 2058 dbSNP
rs1451317964 2063 dbSNP
rs974160454 2066 dbSNP
rs1159288692 2070 dbSNP
rs1362402480 2075 dbSNP
rs1034336148 2081 dbSNP
rs961102275 2082 dbSNP
rs1474877880 2083 dbSNP
rs1368124236 2091 dbSNP
rs1388285754 2097 dbSNP
rs1304483861 2106 dbSNP
rs569831572 2109 dbSNP
rs1240274652 2120 dbSNP
rs1194707966 2123 dbSNP
rs1356481798 2159 dbSNP
rs1220816427 2161 dbSNP
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rs1248724537 2169 dbSNP
rs1489044128 2169 dbSNP
rs1418674136 2177 dbSNP
rs983741669 2185 dbSNP
rs960268189 2188 dbSNP
rs1283153848 2195 dbSNP
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rs887471512 2990 dbSNP
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rs756129133 3216 dbSNP
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rs985197243 5291 dbSNP
rs1249571156 5292 dbSNP
rs1226537167 5300 dbSNP
rs1196300144 5304 dbSNP
rs908888276 5307 dbSNP
rs745671816 5308 dbSNP
rs984826017 5323 dbSNP
rs1372896054 5331 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000316981.3 | 3UTR | AUAAGAUAUGUGAAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000316981.3 | 3UTR | AUAAGAUAUGUGAAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
85 hsa-miR-6833-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055111 SCD stearoyl-CoA desaturase 2 2
MIRT056784 ARID5B AT-rich interaction domain 5B 2 2
MIRT063833 SRP9 signal recognition particle 9 2 6
MIRT068906 TPRG1L tumor protein p63 regulated 1 like 2 2
MIRT087861 CBY1 chibby family member 1, beta catenin antagonist 2 4
MIRT102313 DNAJB9 DnaJ heat shock protein family (Hsp40) member B9 2 10
MIRT189645 AKAP11 A-kinase anchoring protein 11 2 2
MIRT191247 STYX serine/threonine/tyrosine interacting protein 2 2
MIRT195912 SRSF11 serine and arginine rich splicing factor 11 2 4
MIRT215291 CREBRF CREB3 regulatory factor 2 2
MIRT219058 TAF8 TATA-box binding protein associated factor 8 2 4
MIRT240350 UBXN2B UBX domain protein 2B 2 2
MIRT244626 PLAG1 PLAG1 zinc finger 2 2
MIRT271181 PTPN14 protein tyrosine phosphatase, non-receptor type 14 2 2
MIRT277519 PPP2R5C protein phosphatase 2 regulatory subunit B'gamma 2 4
MIRT284544 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT286223 TMEM97 transmembrane protein 97 2 4
MIRT314185 OCLN occludin 2 4
MIRT336247 SKI SKI proto-oncogene 2 4
MIRT357689 PAIP2 poly(A) binding protein interacting protein 2 2 2
MIRT447422 MED21 mediator complex subunit 21 2 2
MIRT451274 ZNF101 zinc finger protein 101 2 2
MIRT453571 CRCP CGRP receptor component 2 2
MIRT454361 ASAH2 N-acylsphingosine amidohydrolase 2 2 2
MIRT460906 POLQ DNA polymerase theta 2 2
MIRT469362 REST RE1 silencing transcription factor 2 6
MIRT470269 PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 2 2
MIRT471927 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT474227 LCLAT1 lysocardiolipin acyltransferase 1 2 2
MIRT480241 C8orf58 chromosome 8 open reading frame 58 2 2
MIRT480543 BZW1 basic leucine zipper and W2 domains 1 2 2
MIRT480924 BCAT1 branched chain amino acid transaminase 1 2 4
MIRT497343 RPP25L ribonuclease P/MRP subunit p25 like 2 2
MIRT498824 DNTTIP2 deoxynucleotidyltransferase terminal interacting protein 2 2 8
MIRT498928 TMEM106B transmembrane protein 106B 2 8
MIRT499584 INTU inturned planar cell polarity protein 2 4
MIRT500118 ZNF106 zinc finger protein 106 2 4
MIRT500474 ZC3H11A zinc finger CCCH-type containing 11A 2 2
MIRT501717 OVOL1 ovo like transcriptional repressor 1 2 2
MIRT501908 MBD4 methyl-CpG binding domain 4, DNA glycosylase 2 4
MIRT502197 HSPB8 heat shock protein family B (small) member 8 2 2
MIRT505229 UBE2D3 ubiquitin conjugating enzyme E2 D3 2 2
MIRT505945 RAN RAN, member RAS oncogene family 2 6
MIRT507971 BCL2L13 BCL2 like 13 2 4
MIRT512251 ARPP19 cAMP regulated phosphoprotein 19 2 6
MIRT513024 GPT2 glutamic--pyruvic transaminase 2 2 2
MIRT530791 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT533403 TXLNG taxilin gamma 2 2
MIRT546728 RNF217 ring finger protein 217 2 2
MIRT554087 SNRPB2 small nuclear ribonucleoprotein polypeptide B2 2 2
MIRT559924 SOD2 superoxide dismutase 2 2 2
MIRT560258 TMEM236 transmembrane protein 236 2 2
MIRT560412 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT560420 ANGPTL3 angiopoietin like 3 2 2
MIRT560495 KCNJ10 potassium voltage-gated channel subfamily J member 10 2 2
MIRT560549 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT560802 PPIP5K2 diphosphoinositol pentakisphosphate kinase 2 2 2
MIRT560883 SULT1B1 sulfotransferase family 1B member 1 2 2
MIRT560997 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT561090 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT561193 LDHD lactate dehydrogenase D 2 2
MIRT561835 NREP neuronal regeneration related protein 2 2
MIRT562393 EIF4E eukaryotic translation initiation factor 4E 2 2
MIRT568153 CCDC6 coiled-coil domain containing 6 2 2
MIRT572725 NUP188 nucleoporin 188 2 2
MIRT572886 ADCY2 adenylate cyclase 2 2 2
MIRT575747 Tnfrsf10b tumor necrosis factor receptor superfamily, member 10b 2 2
MIRT606770 KIAA0040 KIAA0040 2 5
MIRT620360 CD55 CD55 molecule (Cromer blood group) 2 2
MIRT623579 IREB2 iron responsive element binding protein 2 2 2
MIRT640726 PHF13 PHD finger protein 13 2 2
MIRT651579 WDR26 WD repeat domain 26 2 2
MIRT674927 C1orf116 chromosome 1 open reading frame 116 2 2
MIRT687378 NT5DC3 5'-nucleotidase domain containing 3 2 2
MIRT687699 KRR1 KRR1, small subunit processome component homolog 2 2
MIRT693331 E2F2 E2F transcription factor 2 2 2
MIRT695289 TK1 thymidine kinase 1 2 2
MIRT697691 WAC WW domain containing adaptor with coiled-coil 2 2
MIRT699810 SDHD succinate dehydrogenase complex subunit D 2 2
MIRT702280 LEPROT leptin receptor overlapping transcript 2 2
MIRT708498 FAM9C family with sequence similarity 9 member C 2 2
MIRT710101 HEY2 hes related family bHLH transcription factor with YRPW motif 2 2 2
MIRT717883 GBP4 guanylate binding protein 4 2 2
MIRT719248 MS4A1 membrane spanning 4-domains A1 2 2
MIRT719958 SAMD15 sterile alpha motif domain containing 15 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-6833 Cisplatin 5460033 NSC119875 approved sensitive cell line (CIS)
hsa-miR-6833-5p Temozolomide 5394 NSC362856 approved resistant cell line (U251)
hsa-miR-6833-5p Paclitaxel 36314 NSC125973 approved sensitive cell line (BAS)
hsa-miR-6833-5p Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-6833-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)

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