miRTarBase - #MIRT246065


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pre-miRNA Information
pre-miRNA hsa-mir-3123   
Genomic Coordinates chr1: 241132272 - 241132346
Description Homo sapiens miR-3123 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3123
Sequence 49| CAGAGAAUUGUUUAAUC |65
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 1 + 241132323 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1453759221 1 dbSNP
rs968575171 5 dbSNP
rs979407933 9 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol NRAS   
Synonyms ALPS4, CMNS, N-ras, NCMS, NRAS1, NS6
Description NRAS proto-oncogene, GTPase
Transcript NM_002524   
Expression
Putative miRNA Targets on NRAS
3'UTR of NRAS
(miRNA target sites are highlighted)		 
>NRAS|NM_002524|3'UTR
   1 CAAGATACTTTTAAAGTTTTGTCAGAAAAGAGCCACTTTCAAGCTGCACTGACACCCTGGTCCTGACTTCCCTGGAGGAG
  81 AAGTATTCCTGTTGCTGTCTTCAGTCTCACAGAGAAGCTCCTGCTACTTCCCCAGCTCTCAGTAGTTTAGTACAATAATC
 161 TCTATTTGAGAAGTTCTCAGAATAACTACCTCCTCACTTGGCTGTCTGACCAGAGAATGCACCTCTTGTTACTCCCTGTT
 241 ATTTTTCTGCCCTGGGTTCTTCCACAGCACAAACACACCTCTGCCACCCCAGGTTTTTCATCTGAAAAGCAGTTCATGTC
 321 TGAAACAGAGAACCAAACCGCAAACGTGAAATTCTATTGAAAACAGTGTCTTGAGCTCTAAAGTAGCAACTGCTGGTGAT
 401 TTTTTTTTTCTTTTTACTGTTGAACTTAGAACTATGCTAATTTTTGGAGAAATGTCATAAATTACTGTTTTGCCAAGAAT
 481 ATAGTTATTATTGCTGTTTGGTTTGTTTATAATGTTATCGGCTCTATTCTCTAAACTGGCATCTGCTCTAGATTCATAAA
 561 TACAAAAATGAATACTGAATTTTGAGTCTATCCTAGTCTTCACAACTTTGACGTAATTAAATCCAACTTTCACAGTGAAG
 641 TGCCTTTTTCCTAGAAGTGGTTTGTAGACTTCCTTTATAATATTTCAGTGGAATAGATGTCTCAAAAATCCTTATGCATG
 721 AAATGAATGTCTGAGATACGTCTGTGACTTATCTACCATTGAAGGAAAGCTATATCTATTTGAGAGCAGATGCCATTTTG
 801 TACATGTATGAAATTGGTTTTCCAGAGGCCTGTTTTGGGGCTTTCCCAGGAGAAAGATGAAACTGAAAGCACATGAATAA
 881 TTTCACTTAATAATTTTTACCTAATCTCCACTTTTTTCATAGGTTACTACCTATACAATGTATGTAATTTGTTTCCCCTA
 961 GCTTACTGATAAACCTAATATTCAATGAACTTCCATTTGTATTCAAATTTGTGTCATACCAGAAAGCTCTACATTTGCAG
1041 ATGTTCAAATATTGTAAAACTTTGGTGCATTGTTATTTAATAGCTGTGATCAGTGATTTTCAAACCTCAAATATAGTATA
1121 TTAACAAATTACATTTTCACTGTATATCATGGTATCTTAATGATGTATATAATTGCCTTCAATCCCCTTCTCACCCCACC
1201 CTCTACAGCTTCCCCCACAGCAATAGGGGCTTGATTATTTCAGTTGAGTAAAGCATGGTGCTAATGGACCAGGGTCACAG
1281 TTTCAAAACTTGAACAATCCAGTTAGCATCACAGAGAAAGAAATTCTTCTGCATTTGCTCATTGCACCAGTAACTCCAGC
1361 TAGTAATTTTGCTAGGTAGCTGCAGTTAGCCCTGCAAGGAAAGAAGAGGTCAGTTAGCACAAACCCTTTACCATGACTGG
1441 AAAACTCAGTATCACGTATTTAAACATTTTTTTTTCTTTTAGCCATGTAGAAACTCTAAATTAAGCCAATATTCTCATTT
1521 GAGAATGAGGATGTCTCAGCTGAGAAACGTTTTAAATTCTCTTTATTCATAATGTTCTTTGAAGGGTTTAAAACAAGATG
1601 TTGATAAATCTAAGCTGATGAGTTTGCTCAAAACAGGAAGTTGAAATTGTTGAGACAGGAATGGAAAATATAATTAATTG
1681 ATACCTATGAGGATTTGGAGGCTTGGCATTTTAATTTGCAGATAATACCCTGGTAATTCTCATGAAAAATAGACTTGGAT
1761 AACTTTTGATAAAAGACTAATTCCAAAATGGCCACTTTGTTCCTGTCTTTAATATCTAAATACTTACTGAGGTCCTCCAT
1841 CTTCTATATTATGAATTTTCATTTATTAAGCAAATGTCATATTACCTTGAAATTCAGAAGAGAAGAAACATATACTGTGT
1921 CCAGAGTATAATGAACCTGCAGAGTTGTGCTTCTTACTGCTAATTCTGGGAGCTTTCACAGTACTGTCATCATTTGTAAA
2001 TGGAAATTCTGCTTTTCTGTTTCTGCTCCTTCTGGAGCAGTGCTACTCTGTAATTTTCCTGAGGCTTATCACCTCAGTCA
2081 TTTCTTTTTTAAATGTCTGTGACTGGCAGTGATTCTTTTTCTTAAAAATCTATTAAATTTGATGTCAAATTAGGGAGAAA
2161 GATAGTTACTCATCTTGGGCTCTTGTGCCAATAGCCCTTGTATGTATGTACTTAGAGTTTTCCAAGTATGTTCTAAGCAC
2241 AGAAGTTTCTAAATGGGGCCAAAATTCAGACTTGAGTATGTTCTTTGAATACCTTAAGAAGTTACAATTAGCCGGGCATG
2321 GTGGCCCGTGCCTGTAGTCCCAGCTACTTGAGAGGCTGAGGCAGGAGAATCACTTCAACCCAGGAGGTGGAGGTTACAGT
2401 GAGCAGAGATCGTGCCACTGCACTCCAGCCTGGGTGACAAGAGAGACTTGTCTCCAAAAAAAAAGTTACACCTAGGTGTG
2481 AATTTTGGCACAAAGGAGTGACAAACTTATAGTTAAAAGCTGAATAACTTCAGTGTGGTATAAAACGTGGTTTTTAGGCT
2561 ATGTTTGTGATTGCTGAAAAGAATTCTAGTTTACCTCAAAATCCTTCTCTTTCCCCAAATTAAGTGCCTGGCCAGCTGTC
2641 ATAAATTACATATTCCTTTTGGTTTTTTTAAAGGTTACATGTTCAAGAGTGAAAATAAGATGTTCTGTCTGAAGGCTACC
2721 ATGCCGGATCTGTAAATGAACCTGTTAAATGCTGTATTTGCTCCAACGGCTTACTATAGAATGTTACTTAATACAATATC
2801 ATACTTATTACAATTTTTACTATAGGAGTGTAATAGGTAAAATTAATCTCTATTTTAGTGGGCCCATGTTTAGTCTTTCA
2881 CCATCCTTTAAACTGCTGTGAATTTTTTTGTCATGACTTGAAAGCAAGGATAGAGAAACACTTTAGAGATATGTGGGGTT
2961 TTTTTACCATTCCAGAGCTTGTGAGCATAATCATATTTGCTTTATATTTATAGTCATGAACTCCTAAGTTGGCAGCTACA
3041 ACCAAGAACCAAAAAATGGTGCGTTCTGCTTCTTGTAATTCATCTCTGCTAATAAATTATAAGAAGCAAGGAAAATTAGG
3121 GAAAATATTTTATTTGGATGGTTTCTATAAACAAGGGACTATAATTCTTGTACATTATTTTTCATCTTTGCTGTTTCTTT
3201 GAGCAGTCTAATGTGCCACACAATTATCTAAGGTATTTGTTTTCTATAAGAATTGTTTTAAAAGTATTCTTGTTACCAGA
3281 GTAGTTGTATTATATTTCAAAACGTAAGATGATTTTTAAAAGCCTGAGTACTGACCTAAGATGGAATTGTATGAACTCTG
3361 CTCTGGAGGGAGGGGAGGATGTCCGTGGAAGTTGTAAGACTTTTATTTTTTTGTGCCATCAAATATAGGTAAAAATAATT
3441 GTGCAATTCTGCTGTTTAAACAGGAACTATTGGCCTCCTTGGCCCTAAATGGAAGGGCCGATATTTTAAGTTGATTATTT
3521 TATTGTAAATTAATCCAACCTAGTTCTTTTTAATTTGGTTGAATGTTTTTTCTTGTTAAATGATGTTTAAAAAATAAAAA
3601 CTGGAAGTTCTTGGCTTAGTCATAATTCTT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cuAAUUUGUUAAGAGAc 5'
            |||   |||||||| 
Target 5' ttTTA---AATTCTCTt 3'
 1550 - 1563 148.00 -6.40
2 
miRNA  3' cuaauuuGUUAAGAGAc 5'
                 | ||||||| 
Target 5' atcggctCTATTCTCTa 3'
 517 - 533 142.00 -5.20
3 
miRNA  3' cuAAUUUG--U-UAAGAGac 5'
            ||||:|  | ||||||  
Target 5' aaTTAAGCCAATATTCTCat 3'
 1499 - 1518 133.00 -7.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
1010637 6 ClinVar
378279 343 ClinVar
381903 401 ClinVar
291975 552 ClinVar
876239 781 ClinVar
291974 785 ClinVar
291973 787 ClinVar
291972 857 ClinVar
291971 977 ClinVar
291970 1024 ClinVar
875280 1092 ClinVar
875279 1128 ClinVar
291969 1181 ClinVar
291968 1215 ClinVar
291967 1313 ClinVar
291966 1377 ClinVar
291965 1505 ClinVar
874360 1546 ClinVar
291964 1823 ClinVar
874359 1907 ClinVar
874358 1950 ClinVar
874357 2012 ClinVar
874356 2070 ClinVar
291963 2084 ClinVar
291962 2097 ClinVar
876331 2286 ClinVar
876330 2328 ClinVar
876329 2355 ClinVar
876328 2377 ClinVar
876327 2415 ClinVar
291961 2619 ClinVar
876190 2629 ClinVar
876189 2667 ClinVar
291960 2768 ClinVar
876188 2769 ClinVar
876187 2853 ClinVar
291959 2905 ClinVar
291958 2954 ClinVar
291957 2957 ClinVar
876186 2958 ClinVar
875229 2964 ClinVar
291956 2987 ClinVar
875228 3030 ClinVar
875227 3059 ClinVar
291955 3071 ClinVar
291954 3103 ClinVar
291953 3108 ClinVar
291952 3118 ClinVar
291951 3155 ClinVar
874296 3208 ClinVar
291950 3225 ClinVar
291949 3246 ClinVar
874295 3252 ClinVar
874294 3257 ClinVar
291948 3285 ClinVar
291947 3301 ClinVar
291946 3407 ClinVar
876283 3461 ClinVar
291945 3503 ClinVar
876282 3544 ClinVar
291944 3660 ClinVar
876281 3747 ClinVar
876280 3782 ClinVar
876279 3803 ClinVar
291943 3807 ClinVar
291942 3825 ClinVar
291941 3833 ClinVar
291940 3845 ClinVar
876142 3871 ClinVar
291939 3940 ClinVar
876141 3941 ClinVar
COSN504289 130 COSMIC
COSN16519198 275 COSMIC
COSN25532840 529 COSMIC
COSN31555690 563 COSMIC
COSN26574888 621 COSMIC
COSN31607587 780 COSMIC
COSN19561932 817 COSMIC
COSN31514155 840 COSMIC
COSN31540050 1201 COSMIC
COSN31576851 1259 COSMIC
COSN6503623 1313 COSMIC
COSN31488471 1644 COSMIC
COSN22173391 1781 COSMIC
COSN9361090 2051 COSMIC
COSN5999412 2122 COSMIC
COSN20696434 2259 COSMIC
COSN26735648 2641 COSMIC
COSN7172995 2852 COSMIC
COSN8887894 2969 COSMIC
COSN17076196 3079 COSMIC
COSN5730867 3091 COSMIC
COSN20095214 3400 COSMIC
COSN24649189 3400 COSMIC
COSN32123255 3578 COSMIC
COSN15186908 3603 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs763756379 1 dbSNP
rs1252268331 4 dbSNP
rs750915076 7 dbSNP
rs1224126909 10 dbSNP
rs775149123 11 dbSNP
rs1030368523 13 dbSNP
rs370529185 15 dbSNP
rs1344964032 18 dbSNP
rs759238568 29 dbSNP
rs776696986 30 dbSNP
rs770959888 31 dbSNP
rs747132982 38 dbSNP
rs777962225 42 dbSNP
rs1365934177 43 dbSNP
rs772428872 44 dbSNP
rs748345672 49 dbSNP
rs965228833 50 dbSNP
rs903990773 59 dbSNP
rs547732902 64 dbSNP
rs1165013298 69 dbSNP
rs1232637099 70 dbSNP
rs1042137071 72 dbSNP
rs945098081 75 dbSNP
rs1180171692 77 dbSNP
rs1453785233 80 dbSNP
rs1443390630 85 dbSNP
rs896180079 87 dbSNP
rs1056514524 96 dbSNP
rs1223478261 98 dbSNP
rs142903274 99 dbSNP
rs1274005220 101 dbSNP
rs186296549 107 dbSNP
rs998760291 109 dbSNP
rs1211838588 112 dbSNP
rs765781965 118 dbSNP
rs1319393921 125 dbSNP
rs1357354750 131 dbSNP
rs762134087 133 dbSNP
rs45612434 139 dbSNP
rs1183753530 148 dbSNP
rs764169568 149 dbSNP
rs926527444 156 dbSNP
rs894187372 176 dbSNP
rs760961917 191 dbSNP
rs1182154886 193 dbSNP
rs543256806 196 dbSNP
rs775362500 198 dbSNP
rs1163494209 210 dbSNP
rs1394433480 215 dbSNP
rs1410968585 229 dbSNP
rs1331430805 230 dbSNP
rs1439790172 235 dbSNP
rs1455196725 244 dbSNP
rs1056895470 247 dbSNP
rs1441923154 249 dbSNP
rs938442875 250 dbSNP
rs1332683139 252 dbSNP
rs919416658 263 dbSNP
rs908353380 266 dbSNP
rs1036948891 271 dbSNP
rs1340131652 276 dbSNP
rs1031510511 281 dbSNP
rs200648897 284 dbSNP
rs950849071 287 dbSNP
rs531389877 310 dbSNP
rs1211263122 313 dbSNP
rs976486773 316 dbSNP
rs1363166714 323 dbSNP
rs964707222 326 dbSNP
rs1419906907 339 dbSNP
rs909455480 343 dbSNP
rs986383992 359 dbSNP
rs772276402 362 dbSNP
rs931975604 367 dbSNP
rs968198856 370 dbSNP
rs1394947422 385 dbSNP
rs759751540 393 dbSNP
rs1021063826 399 dbSNP
rs180892917 401 dbSNP
rs1378633909 406 dbSNP
rs1327170806 419 dbSNP
rs796595407 423 dbSNP
rs1268356900 424 dbSNP
rs1338591065 425 dbSNP
rs1234788948 428 dbSNP
rs1282133515 432 dbSNP
rs769896264 442 dbSNP
rs1490013906 444 dbSNP
rs1002287788 462 dbSNP
rs1031475176 464 dbSNP
rs977667055 478 dbSNP
rs1217462456 488 dbSNP
rs1371884865 490 dbSNP
rs1449345724 496 dbSNP
rs904819601 509 dbSNP
rs1446596432 522 dbSNP
rs1282423675 529 dbSNP
rs1397317481 539 dbSNP
rs1433244045 545 dbSNP
rs188272768 552 dbSNP
rs1346848266 559 dbSNP
rs941231198 562 dbSNP
rs908404360 567 dbSNP
rs1316262525 582 dbSNP
rs1325807249 586 dbSNP
rs1275296999 589 dbSNP
rs1021550768 595 dbSNP
rs1012874575 596 dbSNP
rs929446196 609 dbSNP
rs923357686 613 dbSNP
rs147476338 618 dbSNP
rs1352348894 628 dbSNP
rs1202882444 630 dbSNP
rs1035381145 632 dbSNP
rs1260495364 638 dbSNP
rs965090712 641 dbSNP
rs1002605778 642 dbSNP
rs910523419 649 dbSNP
rs897575099 651 dbSNP
rs1255428988 654 dbSNP
rs768136474 658 dbSNP
rs1175713944 675 dbSNP
rs942189061 676 dbSNP
rs761307276 689 dbSNP
rs1344169173 691 dbSNP
rs1455494878 692 dbSNP
rs1157021974 703 dbSNP
rs1388046341 704 dbSNP
rs1441722496 705 dbSNP
rs968250862 708 dbSNP
rs761963830 709 dbSNP
rs1021116047 713 dbSNP
rs1439940692 719 dbSNP
rs887978439 720 dbSNP
rs1337288129 724 dbSNP
rs754044937 731 dbSNP
rs1236484850 753 dbSNP
rs1315803868 758 dbSNP
rs1259781050 769 dbSNP
rs143127732 771 dbSNP
rs777742325 773 dbSNP
rs544940685 780 dbSNP
rs1176222040 781 dbSNP
rs746680042 785 dbSNP
rs779629089 786 dbSNP
rs9724642 787 dbSNP
rs935396130 791 dbSNP
rs1411488473 793 dbSNP
rs1005496373 797 dbSNP
rs1167107421 807 dbSNP
rs1392235271 811 dbSNP
rs924025039 820 dbSNP
rs1457393346 821 dbSNP
rs1298652431 826 dbSNP
rs979581912 827 dbSNP
rs1240492989 833 dbSNP
rs1389449483 835 dbSNP
rs968950535 841 dbSNP
rs1212513004 850 dbSNP
rs1046964991 851 dbSNP
rs1333495912 851 dbSNP
rs933820862 851 dbSNP
rs9724643 857 dbSNP
rs375410420 858 dbSNP
rs991388598 866 dbSNP
rs1481856271 876 dbSNP
rs958632294 877 dbSNP
rs1194377436 879 dbSNP
rs1251360504 888 dbSNP
rs943453006 896 dbSNP
rs1202823269 900 dbSNP
rs1415824982 907 dbSNP
rs1423318056 921 dbSNP
rs1171127016 922 dbSNP
rs779352233 928 dbSNP
rs1035318283 934 dbSNP
rs1356150311 934 dbSNP
rs1307136979 935 dbSNP
rs1375702153 942 dbSNP
rs1280022701 945 dbSNP
rs1214587704 953 dbSNP
rs1377895009 960 dbSNP
rs537676173 961 dbSNP
rs1296933535 965 dbSNP
rs570237359 967 dbSNP
rs897527298 971 dbSNP
rs886045108 977 dbSNP
rs1267940060 980 dbSNP
rs554931139 982 dbSNP
rs887927575 991 dbSNP
rs1050571142 997 dbSNP
rs932206530 1004 dbSNP
rs1336435759 1013 dbSNP
rs555171083 1024 dbSNP
rs1187116861 1027 dbSNP
rs1040336292 1032 dbSNP
rs1403007446 1042 dbSNP
rs935328035 1053 dbSNP
rs924000216 1054 dbSNP
rs1409969329 1057 dbSNP
rs1436348270 1067 dbSNP
rs1171425616 1091 dbSNP
rs754089086 1092 dbSNP
rs946808847 1096 dbSNP
rs914387669 1101 dbSNP
rs991336305 1103 dbSNP
rs1183724206 1107 dbSNP
rs980959293 1108 dbSNP
rs1473222372 1119 dbSNP
rs1349128777 1124 dbSNP
rs9724644 1128 dbSNP
rs1311786689 1134 dbSNP
rs1216618544 1141 dbSNP
rs1016649045 1145 dbSNP
rs1484916090 1154 dbSNP
rs1187920740 1159 dbSNP
rs1253533568 1160 dbSNP
rs566123445 1161 dbSNP
rs1455429711 1176 dbSNP
rs1171447327 1177 dbSNP
rs1424063400 1180 dbSNP
rs372008962 1181 dbSNP
rs1005213843 1188 dbSNP
rs886735565 1189 dbSNP
rs532530156 1193 dbSNP
rs1456239276 1194 dbSNP
rs144222380 1199 dbSNP
rs149573035 1213 dbSNP
rs886045107 1215 dbSNP
rs531475097 1219 dbSNP
rs1273393923 1220 dbSNP
rs1367316450 1221 dbSNP
rs1259819153 1225 dbSNP
rs1286601760 1235 dbSNP
rs998083197 1239 dbSNP
rs961999664 1245 dbSNP
rs752953935 1246 dbSNP
rs1006359261 1255 dbSNP
rs767904293 1257 dbSNP
rs1205095641 1261 dbSNP
rs1191535305 1271 dbSNP
rs1245955156 1276 dbSNP
rs951811367 1281 dbSNP
rs1029084062 1288 dbSNP
rs1178641463 1301 dbSNP
rs1306896728 1311 dbSNP
rs14804 1313 dbSNP
rs943486356 1326 dbSNP
rs1453605575 1341 dbSNP
rs1229565181 1344 dbSNP
rs1382978107 1350 dbSNP
rs902059536 1356 dbSNP
rs1349730060 1373 dbSNP
rs886045106 1377 dbSNP
rs542768613 1379 dbSNP
rs1281503304 1396 dbSNP
rs1348783894 1418 dbSNP
rs1227893792 1425 dbSNP
rs796829400 1426 dbSNP
rs527396130 1427 dbSNP
rs999811300 1430 dbSNP
rs1289048296 1435 dbSNP
rs1043755591 1436 dbSNP
rs1206277346 1442 dbSNP
rs138065247 1447 dbSNP
rs1353295615 1449 dbSNP
rs1472032463 1454 dbSNP
rs1188196817 1469 dbSNP
rs913883560 1473 dbSNP
rs1043753366 1474 dbSNP
rs1473936171 1479 dbSNP
rs946756293 1482 dbSNP
rs544719182 1490 dbSNP
rs1410880884 1496 dbSNP
rs577549773 1504 dbSNP
rs775070295 1505 dbSNP
rs1409493379 1513 dbSNP
rs1313714456 1528 dbSNP
rs1384781230 1530 dbSNP
rs1242629907 1532 dbSNP
rs1161889097 1536 dbSNP
rs1055253095 1540 dbSNP
rs1239749907 1542 dbSNP
rs1339951616 1555 dbSNP
rs937147581 1559 dbSNP
rs928147327 1566 dbSNP
rs928514371 1568 dbSNP
rs1177591876 1571 dbSNP
rs1480244769 1573 dbSNP
rs1482589090 1574 dbSNP
rs980962005 1581 dbSNP
rs1259159539 1585 dbSNP
rs1440208418 1590 dbSNP
rs981746694 1593 dbSNP
rs1237441076 1595 dbSNP
rs1475996827 1601 dbSNP
rs1171005076 1603 dbSNP
rs962005156 1606 dbSNP
rs774604143 1607 dbSNP
rs907503165 1608 dbSNP
rs1359514800 1615 dbSNP
rs559318365 1628 dbSNP
rs1333534347 1633 dbSNP
rs1327078124 1636 dbSNP
rs772582183 1644 dbSNP
rs1432857438 1646 dbSNP
rs1295309585 1650 dbSNP
rs1290482269 1654 dbSNP
rs1243286979 1656 dbSNP
rs1234677373 1659 dbSNP
rs1208294889 1665 dbSNP
rs1282026584 1668 dbSNP
rs1342382935 1669 dbSNP
rs1199406509 1675 dbSNP
rs544147408 1680 dbSNP
rs1261878006 1684 dbSNP
rs765218856 1689 dbSNP
rs1308098221 1694 dbSNP
rs951759170 1696 dbSNP
rs1191121011 1699 dbSNP
rs150376751 1704 dbSNP
rs995917222 1705 dbSNP
rs966170890 1719 dbSNP
rs1019136810 1731 dbSNP
rs1379611230 1733 dbSNP
rs555208308 1735 dbSNP
rs1172185116 1742 dbSNP
rs1406157072 1743 dbSNP
rs1385848865 1760 dbSNP
rs1402508360 1761 dbSNP
rs1318475404 1765 dbSNP
rs1364287033 1766 dbSNP
rs1441406527 1767 dbSNP
rs1018556629 1768 dbSNP
rs1329111895 1772 dbSNP
rs1365033305 1774 dbSNP
rs1000164866 1781 dbSNP
rs946154500 1789 dbSNP
rs999453042 1796 dbSNP
rs886045105 1823 dbSNP
rs1352239276 1825 dbSNP
rs902780676 1829 dbSNP
rs1206209264 1852 dbSNP
rs1301426030 1853 dbSNP
rs1266820589 1856 dbSNP
rs1421701076 1863 dbSNP
rs761825355 1874 dbSNP
rs1269966040 1878 dbSNP
rs61758222 1882 dbSNP
rs946776511 1896 dbSNP
rs1473615500 1901 dbSNP
rs374183050 1907 dbSNP
rs1387841189 1908 dbSNP
rs1418294272 1911 dbSNP
rs1295183821 1917 dbSNP
rs1405587959 1917 dbSNP
rs1192842142 1922 dbSNP
rs1490505809 1925 dbSNP
rs895180155 1931 dbSNP
rs1307270335 1934 dbSNP
rs1337124518 1939 dbSNP
rs1226069945 1942 dbSNP
rs141713248 1950 dbSNP
rs1334887900 1957 dbSNP
rs1214934058 1958 dbSNP
rs1052429113 1964 dbSNP
rs1487716637 1980 dbSNP
rs1055199543 1989 dbSNP
rs1484130731 1990 dbSNP
rs1180256778 1997 dbSNP
rs1411373762 2004 dbSNP
rs939439347 2009 dbSNP
rs1166897299 2010 dbSNP
rs1366579305 2011 dbSNP
rs1457248724 2012 dbSNP
rs1298488899 2015 dbSNP
rs1372157940 2018 dbSNP
rs1407656297 2026 dbSNP
rs1219651926 2027 dbSNP
rs1270059959 2029 dbSNP
rs1489046047 2031 dbSNP
rs1229480504 2035 dbSNP
rs1260952620 2036 dbSNP
rs1315440258 2039 dbSNP
rs554225673 2049 dbSNP
rs939639457 2060 dbSNP
rs776223586 2070 dbSNP
rs61758223 2078 dbSNP
rs571329214 2084 dbSNP
rs1344715060 2092 dbSNP
rs886045104 2097 dbSNP
rs1203360163 2101 dbSNP
rs948220200 2104 dbSNP
rs910021889 2105 dbSNP
rs1224638584 2108 dbSNP
rs1345458074 2109 dbSNP
rs983898781 2114 dbSNP
rs1254027686 2121 dbSNP
rs1423228111 2121 dbSNP
rs1045580913 2125 dbSNP
rs951091296 2131 dbSNP
rs1385866011 2133 dbSNP
rs1167589852 2141 dbSNP
rs1288491557 2149 dbSNP
rs1449622854 2153 dbSNP
rs940568485 2174 dbSNP
rs1377780316 2176 dbSNP
rs918285876 2178 dbSNP
rs976435324 2182 dbSNP
rs1367864518 2183 dbSNP
rs549730793 2190 dbSNP
rs907787834 2200 dbSNP
rs984712152 2236 dbSNP
rs1348813646 2244 dbSNP
rs1212489050 2249 dbSNP
rs1254385012 2253 dbSNP
rs1482964893 2256 dbSNP
rs930304623 2258 dbSNP
rs1343180848 2261 dbSNP
rs1187651263 2271 dbSNP
rs1018192262 2272 dbSNP
rs1178390480 2280 dbSNP
rs1480696185 2286 dbSNP
rs768483126 2287 dbSNP
rs1428558621 2290 dbSNP
rs921632664 2293 dbSNP
rs1321820131 2294 dbSNP
rs968537604 2296 dbSNP
rs1433381865 2306 dbSNP
rs1297394025 2307 dbSNP
rs1196568638 2319 dbSNP
rs974447111 2320 dbSNP
rs1221220504 2322 dbSNP
rs1299450206 2344 dbSNP
rs1311695140 2346 dbSNP
rs1209366753 2347 dbSNP
rs965841840 2350 dbSNP
rs746827978 2352 dbSNP
rs978294536 2353 dbSNP
rs569348028 2354 dbSNP
rs967317719 2355 dbSNP
rs372173449 2362 dbSNP
rs1478881960 2369 dbSNP
rs1189153328 2375 dbSNP
rs1484712955 2380 dbSNP
rs1160679403 2381 dbSNP
rs567177411 2387 dbSNP
rs759993141 2398 dbSNP
rs1011189343 2400 dbSNP
rs895127729 2402 dbSNP
rs1258082747 2406 dbSNP
rs775091222 2418 dbSNP
rs1204743426 2422 dbSNP
rs1033697938 2425 dbSNP
rs1438982817 2426 dbSNP
rs1367124693 2430 dbSNP
rs771743386 2432 dbSNP
rs1003599344 2437 dbSNP
rs1229110469 2448 dbSNP
rs550802278 2448 dbSNP
rs1290346501 2449 dbSNP
rs906625427 2463 dbSNP
rs1227781603 2466 dbSNP
rs1045939478 2467 dbSNP
rs1261830150 2469 dbSNP
rs940526812 2472 dbSNP
rs1221060849 2475 dbSNP
rs1453125477 2482 dbSNP
rs548951561 2485 dbSNP
rs886310699 2489 dbSNP
rs1003553984 2493 dbSNP
rs906488426 2493 dbSNP
rs1480783753 2501 dbSNP
rs1048947529 2502 dbSNP
rs1327095141 2510 dbSNP
rs1409217931 2522 dbSNP
rs1471973451 2527 dbSNP
rs1294993279 2531 dbSNP
rs1224875215 2536 dbSNP
rs1380725299 2542 dbSNP
rs1045332549 2545 dbSNP
rs138684663 2546 dbSNP
rs910074106 2548 dbSNP
rs1410708733 2555 dbSNP
rs745328505 2559 dbSNP
rs921570498 2561 dbSNP
rs538856410 2585 dbSNP
rs1381650418 2592 dbSNP
rs1409222647 2593 dbSNP
rs1284714244 2595 dbSNP
rs1338415880 2596 dbSNP
rs778405179 2603 dbSNP
rs944413154 2609 dbSNP
rs1288930335 2610 dbSNP
rs886045103 2619 dbSNP
rs1342603303 2620 dbSNP
rs1206924796 2623 dbSNP
rs1249096456 2629 dbSNP
rs911651458 2632 dbSNP
rs1187593941 2634 dbSNP
rs1463524253 2640 dbSNP
rs1373122571 2647 dbSNP
rs12064849 2649 dbSNP
rs929744422 2655 dbSNP
rs770180355 2656 dbSNP
rs1170729797 2665 dbSNP
rs1368875290 2666 dbSNP
rs966887168 2674 dbSNP
rs918349172 2676 dbSNP
rs1342313171 2678 dbSNP
rs1445818757 2684 dbSNP
rs1365682838 2686 dbSNP
rs61758224 2686 dbSNP
rs1230262501 2699 dbSNP
rs1184530875 2702 dbSNP
rs1461134420 2712 dbSNP
rs1340961755 2715 dbSNP
rs976865930 2721 dbSNP
rs1022501798 2727 dbSNP
rs1440188620 2734 dbSNP
rs1186116603 2742 dbSNP
rs551434084 2743 dbSNP
rs1243011230 2750 dbSNP
rs989704210 2753 dbSNP
rs910851827 2754 dbSNP
rs985375116 2755 dbSNP
rs959630555 2756 dbSNP
rs1173374455 2759 dbSNP
rs533027827 2768 dbSNP
rs1201037392 2769 dbSNP
rs1389242672 2770 dbSNP
rs1021454645 2787 dbSNP
rs1010017882 2790 dbSNP
rs1364153161 2792 dbSNP
rs1250786767 2795 dbSNP
rs1276234711 2811 dbSNP
rs562481466 2812 dbSNP
rs956033056 2813 dbSNP
rs1263095168 2837 dbSNP
rs571359676 2839 dbSNP
rs1211094154 2850 dbSNP
rs1316014774 2852 dbSNP
rs757692247 2853 dbSNP
rs1381762555 2857 dbSNP
rs1477101340 2873 dbSNP
rs1334494335 2880 dbSNP
rs1393043838 2882 dbSNP
rs1397163172 2885 dbSNP
rs1318451967 2892 dbSNP
rs1004007833 2895 dbSNP
rs1166736197 2897 dbSNP
rs1460037942 2902 dbSNP
rs140878667 2905 dbSNP
rs1163820283 2906 dbSNP
rs1325118966 2906 dbSNP
rs1328956533 2907 dbSNP
rs1231915955 2910 dbSNP
rs1288479719 2912 dbSNP
rs1443668482 2914 dbSNP
rs561619045 2921 dbSNP
rs1230834644 2923 dbSNP
rs542889679 2930 dbSNP
rs1012541802 2937 dbSNP
rs1210772376 2939 dbSNP
rs1269769906 2943 dbSNP
rs888690982 2945 dbSNP
rs1198934352 2951 dbSNP
rs150969241 2954 dbSNP
rs769444993 2956 dbSNP
rs549171175 2957 dbSNP
rs554048037 2958 dbSNP
rs897289656 2960 dbSNP
rs143441947 2964 dbSNP
rs943775197 2965 dbSNP
rs1357622347 2972 dbSNP
rs1308250093 2978 dbSNP
rs1351813627 2981 dbSNP
rs1312594017 2983 dbSNP
rs778203603 2987 dbSNP
rs1336217205 2988 dbSNP
rs1316797971 2993 dbSNP
rs985091258 3003 dbSNP
rs1328084793 3022 dbSNP
rs1267649868 3025 dbSNP
rs947341001 3027 dbSNP
rs577675786 3029 dbSNP
rs556142436 3030 dbSNP
rs914499104 3033 dbSNP
rs1484077614 3037 dbSNP
rs988648950 3045 dbSNP
rs1366857418 3050 dbSNP
rs955918025 3050 dbSNP
rs756481996 3055 dbSNP
rs528439389 3059 dbSNP
rs1423702182 3070 dbSNP
rs886045102 3071 dbSNP
rs1371979719 3072 dbSNP
rs1427289599 3073 dbSNP
rs1297156357 3088 dbSNP
rs181200575 3089 dbSNP
rs971216342 3090 dbSNP
rs1397193124 3091 dbSNP
rs767811930 3094 dbSNP
rs1023674731 3096 dbSNP
rs148827219 3103 dbSNP
rs145382662 3108 dbSNP
rs1027256591 3111 dbSNP
rs1344524714 3115 dbSNP
rs886045101 3118 dbSNP
rs1180282601 3129 dbSNP
rs1483616122 3130 dbSNP
rs886045100 3155 dbSNP
rs1183542666 3158 dbSNP
rs571738140 3166 dbSNP
rs994796762 3167 dbSNP
rs897352921 3169 dbSNP
rs1391767084 3182 dbSNP
rs1447328757 3186 dbSNP
rs533774717 3193 dbSNP
rs1269671992 3195 dbSNP
rs1359291659 3198 dbSNP
rs1041593943 3205 dbSNP
rs1221872764 3207 dbSNP
rs766572336 3208 dbSNP
rs1404486524 3209 dbSNP
rs1286625247 3210 dbSNP
rs763011963 3216 dbSNP
rs889526788 3221 dbSNP
rs374889066 3225 dbSNP
rs1295054497 3227 dbSNP
rs1312853973 3237 dbSNP
rs1212283134 3239 dbSNP
rs1254201161 3240 dbSNP
rs776606789 3246 dbSNP
rs763976864 3249 dbSNP
rs947056487 3254 dbSNP
rs370262800 3257 dbSNP
rs1283327622 3263 dbSNP
rs1403807797 3271 dbSNP
rs1434426703 3274 dbSNP
rs1173277060 3284 dbSNP
rs530053161 3285 dbSNP
rs1319871433 3299 dbSNP
rs886045099 3301 dbSNP
rs934554278 3303 dbSNP
rs537913563 3304 dbSNP
rs533067061 3307 dbSNP
rs1481678420 3315 dbSNP
rs1430613479 3335 dbSNP
rs775285768 3339 dbSNP
rs1288545242 3343 dbSNP
rs562519622 3354 dbSNP
rs1221136640 3365 dbSNP
rs1281505535 3368 dbSNP
rs1322914099 3378 dbSNP
rs1228993886 3381 dbSNP
rs1198710704 3385 dbSNP
rs1269874732 3393 dbSNP
rs969880743 3395 dbSNP
rs1479489604 3397 dbSNP
rs1023725521 3399 dbSNP
rs1489286009 3400 dbSNP
rs1267636064 3407 dbSNP
rs529420776 3407 dbSNP
rs61652108 3407 dbSNP
rs1472624772 3411 dbSNP
rs1160560770 3413 dbSNP
rs990878243 3441 dbSNP
rs1399344302 3443 dbSNP
rs1158902834 3447 dbSNP
rs550638204 3461 dbSNP
rs952701824 3471 dbSNP
rs1438963014 3481 dbSNP
rs1301514215 3483 dbSNP
rs1026976488 3484 dbSNP
rs1446685622 3495 dbSNP
rs886045098 3503 dbSNP
rs528883197 3504 dbSNP
rs1223120724 3540 dbSNP
rs1290377688 3544 dbSNP
rs1323278995 3548 dbSNP
rs1219869157 3550 dbSNP
rs11552982 3554 dbSNP
rs1290509735 3560 dbSNP
rs897400303 3566 dbSNP
rs1019816640 3579 dbSNP
rs1263697284 3586 dbSNP
rs1415057487 3592 dbSNP
rs771651265 3593 dbSNP
rs1008820335 3595 dbSNP
rs1343095410 3596 dbSNP
rs889912245 3599 dbSNP
rs1309987441 3603 dbSNP
rs745521714 3613 dbSNP
rs1049487859 3615 dbSNP
rs1011253265 3617 dbSNP
rs562665200 3623 dbSNP
rs1284694344 3630 dbSNP
rs114621049 3631 dbSNP
rs1318377564 3631 dbSNP
rs561454027 3632 dbSNP
rs1243448595 3638 dbSNP
rs1342498437 3658 dbSNP
rs72994441 3660 dbSNP
rs1053194684 3680 dbSNP
rs934629333 3687 dbSNP
rs1204462578 3713 dbSNP
rs1238493326 3714 dbSNP
rs1446850179 3716 dbSNP
rs1176328848 3721 dbSNP
rs1182074184 3729 dbSNP
rs1384975808 3730 dbSNP
rs572616497 3731 dbSNP
rs1170710923 3732 dbSNP
rs1394492948 3733 dbSNP
rs560747454 3734 dbSNP
rs55813139 3741 dbSNP
rs1187204581 3744 dbSNP
rs189738278 3747 dbSNP
rs1240578704 3748 dbSNP
rs1413895534 3758 dbSNP
rs1450330502 3759 dbSNP
rs915717381 3769 dbSNP
rs544382979 3770 dbSNP
rs1365657219 3777 dbSNP
rs11552981 3793 dbSNP
rs1230239428 3796 dbSNP
rs1462480445 3798 dbSNP
rs990930501 3799 dbSNP
rs577115849 3803 dbSNP
rs1279976042 3805 dbSNP
rs72994440 3807 dbSNP
rs1202293996 3811 dbSNP
rs973139411 3815 dbSNP
rs537882978 3818 dbSNP
rs140049110 3825 dbSNP
rs114580873 3826 dbSNP
rs1371483453 3828 dbSNP
rs1475139479 3829 dbSNP
rs768468246 3832 dbSNP
rs886045097 3833 dbSNP
rs185234485 3845 dbSNP
rs1335990336 3846 dbSNP
rs1468230201 3846 dbSNP
rs193029954 3859 dbSNP
rs548917853 3867 dbSNP
rs539638523 3871 dbSNP
rs188799052 3876 dbSNP
rs1052838784 3881 dbSNP
rs1325435382 3883 dbSNP
rs1436718021 3888 dbSNP
rs1276145448 3895 dbSNP
rs1320787757 3902 dbSNP
rs1383951058 3903 dbSNP
rs998928058 3913 dbSNP
rs1263000115 3914 dbSNP
rs1330248588 3916 dbSNP
rs1207220807 3918 dbSNP
rs147926293 3940 dbSNP
rs528970050 3941 dbSNP
rs1171141480 3962 dbSNP
rs948604241 3963 dbSNP
rs748496892 3976 dbSNP
rs1417535503 3979 dbSNP
rs184706242 3987 dbSNP
rs1175628874 3998 dbSNP
rs191450509 3999 dbSNP
rs915773075 4014 dbSNP
rs1156639739 4026 dbSNP
rs1383925998 4026 dbSNP
rs1387058176 4027 dbSNP
rs1325098485 4029 dbSNP
rs74927774 4041 dbSNP
rs1343108572 4042 dbSNP
rs1403720463 4045 dbSNP
rs527994102 4061 dbSNP
rs1385609819 4063 dbSNP
rs1259413057 4065 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions MCF7
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRR1045082. RNA binding protein: AGO2. Condition:Untreated ...

- Farazi TA; Ten Hoeve JJ; Brown M; et al., 2014, Genome biology.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' cuaauuuGUUAAGAGAc 5'
                 | ||||||| 
Target 5' aucggcuCUAUUCUCUa 3'
 		3 - 19
Article - Farazi TA; Ten Hoeve JJ; Brown M; et al.
- Genome biology, 2014
BACKGROUND: Various microRNAs (miRNAs) are up- or downregulated in tumors. However, the repression of cognate miRNA targets responsible for the phenotypic effects of this dysregulation in patients remains largely unexplored. To define miRNA targets and associated pathways, together with their relationship to outcome in breast cancer, we integrated patient-paired miRNA-mRNA expression data with a set of validated miRNA targets and pathway inference. RESULTS: To generate a biochemically-validated set of miRNA-binding sites, we performed argonaute-2 photoactivatable-ribonucleoside-enhanced crosslinking and immunoprecipitation (AGO2-PAR-CLIP) in MCF7 cells. We then defined putative miRNA-target interactions using a computational model, which ranked and selected additional TargetScan-predicted interactions based on features of our AGO2-PAR-CLIP binding-site data. We subselected modeled interactions according to the abundance of their constituent miRNA and mRNA transcripts in tumors, and we took advantage of the variability of miRNA expression within molecular subtypes to detect miRNA repression. Interestingly, our data suggest that miRNA families control subtype-specific pathways; for example, miR-17, miR-19a, miR-25, and miR-200b show high miRNA regulatory activity in the triple-negative, basal-like subtype, whereas miR-22 and miR-24 do so in the HER2 subtype. An independent dataset validated our findings for miR-17 and miR-25, and showed a correlation between the expression levels of miR-182 targets and overall patient survival. Pathway analysis associated miR-17, miR-19a, and miR-200b with leukocyte transendothelial migration. CONCLUSIONS: We combined PAR-CLIP data with patient expression data to predict regulatory miRNAs, revealing potential therapeutic targets and prognostic markers in breast cancer.
LinkOut: [PMID: 24398324]
CLIP-seq Support 1 for dataset SRR1045082
Method / RBP PAR-CLIP / AGO2
Cell line / Condition MCF7 / Untreated
Location of target site ENST00000369535.4 | 3UTR | UUAUCGGCUCUAUUCUCUAAACUGGCAUCUGCUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 24398324 / SRX388831
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
113 hsa-miR-3123 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT058369 TBCEL tubulin folding cofactor E like 2 4
MIRT059816 EFNA1 ephrin A1 2 2
MIRT066850 TMEM19 transmembrane protein 19 2 2
MIRT071503 CALM1 calmodulin 1 2 6
MIRT073758 NUBP1 nucleotide binding protein 1 2 2
MIRT074324 TNRC6A trinucleotide repeat containing 6A 2 10
MIRT094805 LMNB1 lamin B1 2 2
MIRT099173 MAP3K4 mitogen-activated protein kinase kinase kinase 4 2 2
MIRT099545 ID4 inhibitor of DNA binding 4, HLH protein 2 2
MIRT122643 E2F3 E2F transcription factor 3 2 2
MIRT180918 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 8
MIRT192844 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT224984 BAG4 BCL2 associated athanogene 4 2 2
MIRT246065 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT357085 PRRC1 proline rich coiled-coil 1 2 2
MIRT378170 C5ORF51 chromosome 5 open reading frame 51 2 2
MIRT441636 KDM5A lysine demethylase 5A 2 2
MIRT441802 BCAS1 breast carcinoma amplified sequence 1 2 2
MIRT443019 C21orf91 chromosome 21 open reading frame 91 2 2
MIRT443445 SERPINB4 serpin family B member 4 2 2
MIRT443661 SERPINB3 serpin family B member 3 2 2
MIRT443776 STS steroid sulfatase 2 2
MIRT444663 TSPAN14 tetraspanin 14 2 2
MIRT444924 KIAA1522 KIAA1522 2 2
MIRT445378 FOXO1 forkhead box O1 2 2
MIRT447920 PAIP2B poly(A) binding protein interacting protein 2B 2 2
MIRT449202 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT449713 TSPYL1 TSPY like 1 2 2
MIRT450403 TMEM47 transmembrane protein 47 2 2
MIRT450787 PAPOLG poly(A) polymerase gamma 2 2
MIRT451381 C19orf43 telomerase RNA component interacting RNase 2 2
MIRT452507 WDR1 WD repeat domain 1 2 2
MIRT453264 PARP11 poly(ADP-ribose) polymerase family member 11 2 2
MIRT454642 FAM83H family with sequence similarity 83 member H 2 2
MIRT455513 C6orf106 chromosome 6 open reading frame 106 2 2
MIRT456709 LDB1 LIM domain binding 1 2 2
MIRT457231 AP3D1 adaptor related protein complex 3 delta 1 subunit 2 2
MIRT459235 MRPS21 mitochondrial ribosomal protein S21 2 2
MIRT460553 IFNAR1 interferon alpha and beta receptor subunit 1 2 4
MIRT461424 CTSL2 cathepsin V 2 3
MIRT462869 CYP51A1 cytochrome P450 family 51 subfamily A member 1 2 2
MIRT467178 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT469233 RHOBTB3 Rho related BTB domain containing 3 2 2
MIRT474125 LIPC lipase C, hepatic type 2 2
MIRT475509 HSP90B1 heat shock protein 90 beta family member 1 2 4
MIRT478134 DHX36 DEAH-box helicase 36 2 2
MIRT481326 ATP5A1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle 2 2
MIRT482003 AMOTL2 angiomotin like 2 2 2
MIRT482230 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT483436 RHOXF2B Rhox homeobox family member 2B 2 2
MIRT483824 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT492051 TNFSF9 TNF superfamily member 9 2 2
MIRT494114 DLX6 distal-less homeobox 6 2 2
MIRT498882 ZNF12 zinc finger protein 12 2 10
MIRT499674 NPHP3 nephrocystin 3 2 2
MIRT506932 IGDCC4 immunoglobulin superfamily DCC subclass member 4 2 6
MIRT509461 ZNF587 zinc finger protein 587 2 6
MIRT510048 AKR1B10 aldo-keto reductase family 1 member B10 2 4
MIRT514807 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT515217 CRCP CGRP receptor component 2 2
MIRT515486 INCENP inner centromere protein 2 4
MIRT517765 ZNF366 zinc finger protein 366 2 4
MIRT518216 TRMT10B tRNA methyltransferase 10B 2 2
MIRT519602 ZNF805 zinc finger protein 805 2 2
MIRT523570 GGCX gamma-glutamyl carboxylase 2 4
MIRT525795 SOD2 superoxide dismutase 2 2 2
MIRT533055 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT534218 SLC37A3 solute carrier family 37 member 3 2 4
MIRT535633 NR2E1 nuclear receptor subfamily 2 group E member 1 2 2
MIRT535863 MRPL17 mitochondrial ribosomal protein L17 2 2
MIRT536344 LEFTY1 left-right determination factor 1 2 2
MIRT537923 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT543114 SKA2 spindle and kinetochore associated complex subunit 2 2 2
MIRT544717 ZNF529 zinc finger protein 529 2 2
MIRT544847 BASP1 brain abundant membrane attached signal protein 1 2 4
MIRT545536 ARF3 ADP ribosylation factor 3 2 2
MIRT547124 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 2 2
MIRT548070 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT548446 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 2
MIRT548626 DAZAP1 DAZ associated protein 1 2 4
MIRT550259 FAM120AOS family with sequence similarity 120A opposite strand 2 2
MIRT551940 AKAP8 A-kinase anchoring protein 8 2 4
MIRT552511 ZIK1 zinc finger protein interacting with K protein 1 2 4
MIRT554015 SPIRE1 spire type actin nucleation factor 1 2 2
MIRT556647 KPNA2 karyopherin subunit alpha 2 2 4
MIRT559744 ACOX1 acyl-CoA oxidase 1 2 2
MIRT560393 TMEM254 transmembrane protein 254 2 2
MIRT562234 HMGB2 high mobility group box 2 2 2
MIRT563325 ORC4 origin recognition complex subunit 4 2 2
MIRT563697 RPS26 ribosomal protein S26 2 2
MIRT565066 USP25 ubiquitin specific peptidase 25 2 2
MIRT565349 TMED2 transmembrane p24 trafficking protein 2 2 2
MIRT565624 SLC31A1 solute carrier family 31 member 1 2 2
MIRT566379 PNISR PNN interacting serine and arginine rich protein 2 2
MIRT567575 FEM1C fem-1 homolog C 2 2
MIRT569383 DDX20 DEAD-box helicase 20 2 2
MIRT570037 FAM228A family with sequence similarity 228 member A 2 2
MIRT573269 DCAF10 DDB1 and CUL4 associated factor 10 2 2
MIRT573912 PARP1 poly(ADP-ribose) polymerase 1 2 2
MIRT620034 ST6GALNAC3 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 2 2
MIRT635606 ZWILCH zwilch kinetochore protein 2 2
MIRT644413 FRMD6 FERM domain containing 6 2 2
MIRT652528 TM9SF4 transmembrane 9 superfamily member 4 2 2
MIRT656238 MFSD6 major facilitator superfamily domain containing 6 2 2
MIRT661373 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT662530 PNPLA4 patatin like phospholipase domain containing 4 2 2
MIRT675551 MALL mal, T-cell differentiation protein like 2 2
MIRT693650 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT696348 SLC35D2 solute carrier family 35 member D2 2 2
MIRT705815 AKNA AT-hook transcription factor 2 2
MIRT707632 TARDBP TAR DNA binding protein 2 2
MIRT717902 COPS8 COP9 signalosome subunit 8 2 2
MIRT723626 SOBP sine oculis binding protein homolog 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3123 Doxorubicin 31703 NSC123127 approved sensitive High Triple-Negative Breast Cancer cell line (MDA-MB-231, MDA-MB-468)
hsa-mir-3123 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-3123 Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-3123 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3123 Vemurafenib 42611257 NSC761431 approved resistant cell line (LM16)

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