miRTarBase - #MIRT248254


—
pre-miRNA Information
pre-miRNA hsa-mir-4749   
Genomic Coordinates chr19: 49854591 - 49854651
Description Homo sapiens miR-4749 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4749-3p
Sequence 42| CGCCCCUCCUGCCCCCACAG |61
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN19730808 2 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs147943327 1 dbSNP
rs148982635 2 dbSNP
rs372882504 3 dbSNP
rs200056596 4 dbSNP
rs570340094 5 dbSNP
rs778438436 11 dbSNP
rs748573000 13 dbSNP
rs770230641 14 dbSNP
rs201103722 16 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SP1   
Synonyms -
Description Sp1 transcription factor
Transcript NM_003109   
Other Transcripts NM_138473   
Expression
Putative miRNA Targets on SP1
3'UTR of SP1
(miRNA target sites are highlighted)		 
>SP1|NM_003109|3'UTR
   1 GATCAGGCACCCGGGGCCAGAGACATATGGGCCATACCCCTTAACCCCGGGATGCAAGGTAGCATGGGTCCAAGAGACAT
  81 GGAAGAGAGAGCCATGAAGCATTAAAATGCATGGTGTTGAGAAGAATCAGGAGAGGGATACAAGAGAGGAGATGGGGTCC
 161 CGGCACCCATCTGTATCATCAGTGCCTCTTTGAAGGTGGGAAACATTAGTGAAAATTCTGTTGGTGCCACGCTTTGATGA
 241 GCATTTGTTTGACCCCAGTTTCTTCTTACACTTCTTACCCCAGCCTACCCTTCCTGCATTTCTCTTCTCAGCTCTTCCAT
 321 GATGGATTCCCCCCCCTTTCCTAAAGCCATCATGCCTTGATAAATATATATGATCATTGAAATACTTTTTAACAAAAAAC
 401 AGATTCTATATTATTATATATATATATATATATATAAAGATATATAGAGATGCATTCACAGGGGTTGGCTGGGAGGAGGA
 481 AGACCATTCTGTGACCAAAATACCTTGGTCATTTTTTTTATATTGCCTTATTTCCCTATGGCTGAGCCTTGTTGTGACAC
 561 ATCAAGCTTTTCTGTAGATGTTGTCTTGGCTTCCCACCAGCTTAAGCGTTCATATGCTCTGCTTTTAGTTCATATATACA
 641 TACATAATGTTTTTCCTTTCTTAATTTTGTCTTTTTGTTTGGGATCAGCTTCTTGCACTCCTTCCCTAACTCAACTGTTG
 721 CCGTCTCATCTTCTCTCATCTGATCACTTCATGTTTTGTTTTTGTTACTGCCTGGATGAGGCACTTCTGTCAATTTTTTC
 801 AGGACCTTAGTTCCAGCAGCAGAATGGAAAAATCCTTGAAGCCCAGGCTGATGCTTGAAGTAACTGTGGAGGGAGTGTTC
 881 AAAATACTACTGACGCAGGCACCTTCTTGGCGCTGGAGAGTCAAAGGCATCTCCCTTCATTAGCTGCTCTGAGCATCAAG
 961 AATTAGAAGTCTTTCAGTGGAATTGTACAAGAGTCCCTTTGAAGATAATAATCTTGGCTCAGTTTGTATAAACTGTCAAA
1041 TTTTCAAATAATAGGTAGGGGGCTTTCACTAGGAAAATCATGTGCTCAGAAGAGGAAATGACTCGTAGTCAGGTTCAGGA
1121 GTTAGTGGAGTATTTGGACTTTGGTACTGCTGTCTTCCAAGGTAGCTCTAAGTTTTGATGTGTGGGCTTCTGAGTTTATA
1201 TTCTGAAAGGAAATACACTTCTTTTGAACATCCCCACTAGGTTCTTTTCCATTGTCAATAAGGAGCATCAGCCAGTGAAT
1281 CTGTTTCAGGTTTCCATTCTGCAGAACTCCTCCAAAGCATGTGCTAGTGGCAAGACAGTGGTTCTTATGATGTTTTCCCT
1361 TAACTTTTCCTTGTATGTTCTTGGGTGGTTCCTAAGGGAAAGGGAAGCACATGATCATGGGAATGATAGCCCAGAACAAA
1441 AAGAAATCTTGTCTTACCACAGTGTTTTATAGGAGAGATTGGGAGAAATCATCCTGTTTTCTCTGTGACCTGATTTCAGA
1521 AGAGACTGATCCAAAAATTATAACGGCAGGGAACCTAGTGCATTTGGCACTGAGATTTAAATGCAACCAGAATTGTCCTC
1601 AAGGCCCAGCCATAAAAGCATTGTCTCTCTCGACCTTCTGGTATCTTGTTAGAGAGCTTTTCACTGTGAGGAAGTGTGGA
1681 AAAATAGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAATCTGTTAGGTTGGGGATAGGTTTTCTGCTAG
1761 CCAATATTAAAAGAGACCTGCAATAAAAAAATTACCCTGATCTGATAGAAAGCAAGTGTTTTTGTATGTGTGGGTGAATG
1841 TGTGTTCATGCCCGTATATGTCTACACACAGATGACAAATTATATTTGAAATCGTTGGAAAATAAATTCAGATCAAAATG
1921 CCTTTCAGGCCCATTACCTAGAAATCTATCTTAAAACCTGGGTATGTTCCTAAGGTCATTTCTTTGCTTATGCTAAATTA
2001 ATTACAATTATGAATGGAGGATATTCTACTGTACTTTTTTAAAAAGAAACTATTTTTGTGTTTGAAAGTGAAACCAACAT
2081 CCAGATCTATAGCAGAGTCCTTATTCTTCTCATAAATCTTTTTACTTTGGCTACAAATAGATGATGGTATGATTCTATTA
2161 TATATTTTATATAAAATCCATCCAAATTAAGTTTTGGGTAAGTGTGTTGTTTAATCTGAACTATAGTAACTTAATACTCT
2241 AAACAATAGTTCACTCCATTTGGTCCTTTCTCCACAGATGTAATTATGTTTTCAACTCAGGAACTATGGCAAGGAACTTT
2321 CCCCAGATCAAATTCTATTAACGCTGAGATACAAGTCATCCATGCACAGCCACTATCATACCCTTTATTCTCACTGAAAG
2401 GCAGAACTCAGAACCTGTTATTTTATGTCTGTAATCATGTACTTTGGCATCTTTTGGAGGAAAGGGGCAGGATAACTCAC
2481 TGGAATGTACAGTATTTTGCTAGTGCATTTCAAGGAATGGAATCTTCTCCAGTATGAAATTACCAGATATAAAATAATGT
2561 AATGATGCTGAGGATATAAGCTTTTAGAAGGTAATTTGATGGTATTTCTTTCTCGAATGAAAAGCTGCTGGTTTACCCTC
2641 AACCCTATTCATTAGCATTACCATGAGTGAATTTATATCTAATTATTTCCACTTGCCCTGTTCTCTTCACACCAAGGAAG
2721 CTCCAGATCCAGTATCTTGTTTGGCCTCAAAACAGAAGCAGCTTCTTTTGTCTCCCAGCAGTAGTGAGCCACTCAGTCTC
2801 TTCCACAGGAAGTTTGGAGCCTACATTCCTTGAGTCAGGAGCTTATTACAGAAAAACCCCGTTTCCCTGAACTTTTGGCT
2881 AACAGAAATTAATTTAACTGACATGCATATTGATTCTGAAATTTTTTTCCTAAGTTTTTTTCATTTTTTTGAATGAGTTT
2961 TTTAAATTTTTTAGATGACCAAAACTTGCAGGGCAGGGGATGCCCAGAAGAGTGGTGAGATAGTAAAACACTTATTCCCT
3041 CATCCTTTCAGGTTTTCAGGTTGCCCATTTATATTCATTTACATGTCATTTGACTGTCTCACTTTTTACCCAGAACAGTA
3121 ACAACCCACACCGTCTTCCTTCAGGGATTTCCAACTGGCACTCTGTGGGTGCTACACAGAATGCAATTTAATGGATATTT
3201 CTCAGCCTGGTTCAGAATAAATTGATCCTTTGATCCCAGAAAGTATATACTGAAGTGTGGGATAAAGATTATGATTAGGG
3281 GAGGGTTGGAGACAAAAGCTGTAAATTACTATGGCTGATTTATTTCTACTATATACATATATATTTTTTGCTTTTGTATA
3361 TCCTATATAGGAAACTAAGCATTGTATTTTTTTTAACAAATCTAAAAAAGCACTATGAACTACAGGTGTTTGACTTTCAA
3441 AATATATTTTGTATTGTTAATATCTTCACATTGTGTGAATACTGGAAGCTGCAGATCTTTGCTAGGACGCAATAAATTTA
3521 TATACTTTTTGAGGGGTTCTTCTGGGGTGCTAATCAGGCCCCTGTTATGCTTAGGGGGAGCCCTGGTGCTACTTGCTTGA
3601 AGTTTTCAGTGTAAGTACCCTGATGCCTTTTGGACCTTGGGATCAGATCAAGAGTTTTGGAGATCAGGTACCAAGGAAAT
3681 AAGGACAGTCTAGCTGCCTCAAGTGAGGGGCCCTTTGCATAGCTCTCCTTCCCCCTCACTGAAGCTGGGTAGCCTATTGG
3761 GGTTGAGAGGGAAAATGTGAAATCTCAGAATTTATCTCCCTTAGAAGAGAGCCAGTAACTTATGTACAAGGATGAAAGAA
3841 AGGTCGCAGCAGTAGCTTTGGGGAAAGGGAGGAAGATATGGCACTTCTCCAACCCCGGAAAACATTGCTTTTGAAAACTG
3921 CTGATAAAATATGAGCCGGTTATTACTTCTGTTTGGGAGACTGTGCTCTCTGTGGTGCCTCTCTTGGCTCTACTCCACAG
4001 ATACCAGACCTCTTCTAAGAGGATGAGCAGACCAGCTTTGAGGTTGACCTGTTTCTCTTTGTCTGCCTTCCCAAAACACC
4081 AGCCCCCAGGAAGACATTAAGCAGCCTTAAGCTTAAATTCCTACTCCCTCTTCCAAATTTGGCTCACTTGCCTTAGATCC
4161 AAGGCAGGGAAAGGAAAAGAAGGGGGGTCTCTGGCTTTATTACTCCCCTAAGTCTTTACTCTGACTTCCCCAAACCCAGA
4241 AAGATTTTCTCCACAGTGTTCATTTGAAAGAGGAGTATTTTGTCCCATTTTCCCCTTCCTCATTATCAAACAGCCCCAGT
4321 CTTCCTTGTCTCTGCTAAGAAAGTAGAGGCATGATGATCTGCCTCTCAACTGCCCTAAGTCCTAGCTAAGTATCAGGGGA
4401 AAAAAAAAAAAAAAAAGCCTAACAAATGGGATTAGACTAGGGCTGCAAGTAGTGAGGATTTTGTTGATACCTCTGCTGGG
4481 ATGTGTGCTTTCCCATATCTTGCCTTCAGGAATTACACTGTGCCTTTTCCCCAGGGATATGGGCTCTGTCTACCCAGTGC
4561 TCCAGTTTCCCGGTAACTGCTCTTGAACATTGTGGACAAGGGCAGGTCTTCATATTTTTGATCATCCCTTTCTCCCAGTG
4641 AAATCCCATAGCCCTTACCTAGAGTCTAGGGCACAAAGACTTCGGGGAAGATACACTGAGATTGACCTGAGGAGACATCT
4721 ACACACACCAGTGGCAGCTGCCCCAGGGCCTGCTTCCCCTTCCTAAGTCTGTCATCCTCTGGAAGGGATGGGTGGTGCTC
4801 CAATCTCTGGTGCCTAAAAACCCAAGTTTATTTCTCTCTTAACACTGGCAATAACCAGTCCACACCACTGTTGCCTTTTA
4881 AAACCTCTTAATAATCTCATGCTGTGTTTGTTTTGATTCCAATCCAATTATCACCAGGGCTGTGTGGGTAAATGCTTTTA
4961 AATGCTCTCTCATCTTGTTCTTCCCCCTCACCCCCCACTCTTAGGTATGTATGATGCTAATCTTGTCCCTAAGTAAGTTT
5041 CTTCCTGCTCCTTTTGTATCTTCCTTTCTTGTCTTTCCTCCTACCTTTTGTCTCTTGGTGTTTTGGGACTTTTTTTTTTT
5121 TTTTTTTGGCCTTTTGTACAAAGATTAGTTTCAATGTAGTCTGTAGCCTCCTTTGTAAACCAATTAAAAAGTTTTTTAAT
5201 AAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gacacccccgUC-CUCCCCGc 5'
                    || ||||||| 
Target 5' agctgcctcaAGTGAGGGGCc 3'
 3692 - 3712 142.00 -16.00
2 
miRNA  3' gacACCCCCGUCCUCCCCGc 5'
             ||| || |  |||||| 
Target 5' tttTGGAGGAA--AGGGGCa 3'
 2452 - 2469 128.00 -15.20
3 
miRNA  3' gacacccccgucCUCCCCGc 5'
                      ||||||: 
Target 5' tatatactttttGAGGGGTt 3'
 3519 - 3538 124.00 -10.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26996395 13 COSMIC
COSN30469964 13 COSMIC
COSN30487306 48 COSMIC
COSN31532516 49 COSMIC
COSN30145085 66 COSMIC
COSN31597495 113 COSMIC
COSN31483759 147 COSMIC
COSN26352872 231 COSMIC
COSN31484013 337 COSMIC
COSN31523271 337 COSMIC
COSN1576472 371 COSMIC
COSN31550086 400 COSMIC
COSN30545084 438 COSMIC
COSN1149410 520 COSMIC
COSN31533968 596 COSMIC
COSN9563620 942 COSMIC
COSN24038863 1014 COSMIC
COSN1576473 1181 COSMIC
COSN31513910 1245 COSMIC
COSN31524185 1337 COSMIC
COSN1576474 1430 COSMIC
COSN31528542 1449 COSMIC
COSN31488906 1484 COSMIC
COSN26551166 1610 COSMIC
COSN20109618 1721 COSMIC
COSN20109615 1727 COSMIC
COSN17037884 1743 COSMIC
COSN31596784 1807 COSMIC
COSN26565683 1825 COSMIC
COSN30540208 2209 COSMIC
COSN31584915 2278 COSMIC
COSN15706988 2299 COSMIC
COSN26876988 2345 COSMIC
COSN31485159 2461 COSMIC
COSN20109621 2886 COSMIC
COSN2486776 2923 COSMIC
COSN20474831 3114 COSMIC
COSN7616852 3134 COSMIC
COSN31490100 3233 COSMIC
COSN31544880 3383 COSMIC
COSN31569961 3410 COSMIC
COSN26548128 3452 COSMIC
COSN5946348 3461 COSMIC
COSN31543182 3523 COSMIC
COSN22471671 3650 COSMIC
COSN31546438 3793 COSMIC
COSN30541494 3920 COSMIC
COSN30109700 3999 COSMIC
COSN31569332 4077 COSMIC
COSN22810665 4133 COSMIC
COSN31539178 4157 COSMIC
COSN14491391 4192 COSMIC
COSN9563621 4192 COSMIC
COSN22268303 4222 COSMIC
COSN16862230 4299 COSMIC
COSN31563341 4403 COSMIC
COSN20109624 4417 COSMIC
COSN30160429 4441 COSMIC
COSN26557082 4537 COSMIC
COSN19059163 4538 COSMIC
COSN1576476 4584 COSMIC
COSN31532714 4585 COSMIC
COSN20933754 4624 COSMIC
COSN23873481 4624 COSMIC
COSN1576477 4660 COSMIC
COSN31549747 4811 COSMIC
COSN9751617 4841 COSMIC
COSN26573406 5029 COSMIC
COSN26644269 5046 COSMIC
COSN26089577 5061 COSMIC
COSN20109629 5126 COSMIC
COSN20109628 5127 COSMIC
COSN20109626 5128 COSMIC
COSN31610545 5182 COSMIC
COSN23387941 5187 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1200626315 2 dbSNP
rs148868929 3 dbSNP
rs774415873 5 dbSNP
rs912457897 6 dbSNP
rs761433221 8 dbSNP
rs766907404 10 dbSNP
rs750123937 12 dbSNP
rs372626037 13 dbSNP
rs375908474 14 dbSNP
rs370587597 15 dbSNP
rs778313243 17 dbSNP
rs1304791881 18 dbSNP
rs781105580 25 dbSNP
rs188667526 27 dbSNP
rs1283807975 28 dbSNP
rs373114098 29 dbSNP
rs377270450 31 dbSNP
rs960686030 34 dbSNP
rs775849407 35 dbSNP
rs1308068037 43 dbSNP
rs1345904366 48 dbSNP
rs749153496 49 dbSNP
rs768547505 50 dbSNP
rs1264097884 52 dbSNP
rs1488378568 53 dbSNP
rs1404624926 59 dbSNP
rs1432120218 67 dbSNP
rs1389684658 71 dbSNP
rs1035961765 78 dbSNP
rs1427617356 80 dbSNP
rs1187963345 89 dbSNP
rs1475517910 96 dbSNP
rs1241062210 111 dbSNP
rs915953445 112 dbSNP
rs528156495 131 dbSNP
rs546253459 141 dbSNP
rs1321241611 145 dbSNP
rs1336830704 151 dbSNP
rs1279825843 153 dbSNP
rs564866139 156 dbSNP
rs1022171078 160 dbSNP
rs968866370 162 dbSNP
rs978825738 163 dbSNP
rs975221314 166 dbSNP
rs1338025502 167 dbSNP
rs1028976211 174 dbSNP
rs1404409809 175 dbSNP
rs1172957520 176 dbSNP
rs374618567 179 dbSNP
rs1301677827 182 dbSNP
rs1347686776 183 dbSNP
rs1189453309 185 dbSNP
rs926002240 189 dbSNP
rs1184348238 203 dbSNP
rs934841326 204 dbSNP
rs529962149 205 dbSNP
rs1281941787 206 dbSNP
rs987404860 220 dbSNP
rs1204994554 227 dbSNP
rs1479463869 228 dbSNP
rs1053259896 231 dbSNP
rs1409264180 232 dbSNP
rs1272576008 234 dbSNP
rs1226442066 238 dbSNP
rs1194691991 248 dbSNP
rs1385161855 255 dbSNP
rs1315782402 258 dbSNP
rs746033128 269 dbSNP
rs901322786 270 dbSNP
rs1300350397 271 dbSNP
rs772248421 278 dbSNP
rs145333898 279 dbSNP
rs1385374939 285 dbSNP
rs934282418 288 dbSNP
rs775735390 296 dbSNP
rs1442200901 307 dbSNP
rs931106558 308 dbSNP
rs764902690 311 dbSNP
rs1439466245 317 dbSNP
rs532249349 319 dbSNP
rs1230954043 327 dbSNP
rs535227855 328 dbSNP
rs547576226 329 dbSNP
rs938338256 329 dbSNP
rs559234139 330 dbSNP
rs1454500773 332 dbSNP
rs1175296931 334 dbSNP
rs1392477088 334 dbSNP
rs1373106512 335 dbSNP
rs781524296 336 dbSNP
rs1010900554 337 dbSNP
rs1021824498 337 dbSNP
rs1418400072 340 dbSNP
rs896874696 345 dbSNP
rs994310646 350 dbSNP
rs1490440543 357 dbSNP
rs1269888545 361 dbSNP
rs1222009877 375 dbSNP
rs1297652309 381 dbSNP
rs1240454852 394 dbSNP
rs1262537586 394 dbSNP
rs1316870078 394 dbSNP
rs1286960296 396 dbSNP
rs1225743693 403 dbSNP
rs1346478891 407 dbSNP
rs1397364816 409 dbSNP
rs904673226 409 dbSNP
rs996279434 409 dbSNP
rs1449636383 410 dbSNP
rs1029049785 412 dbSNP
rs1343395482 413 dbSNP
rs1324549209 414 dbSNP
rs1428333404 414 dbSNP
rs1480675061 414 dbSNP
rs10699711 415 dbSNP
rs1199023015 415 dbSNP
rs1295794967 415 dbSNP
rs1327851204 415 dbSNP
rs1362386646 415 dbSNP
rs1381163896 415 dbSNP
rs774801317 415 dbSNP
rs550610580 417 dbSNP
rs62936662 417 dbSNP
rs1470227010 418 dbSNP
rs960822334 418 dbSNP
rs1012154426 419 dbSNP
rs1235412610 421 dbSNP
rs1170621826 423 dbSNP
rs1303893670 430 dbSNP
rs1015337380 436 dbSNP
rs1023476980 436 dbSNP
rs1194100393 440 dbSNP
rs1346129912 442 dbSNP
rs181412034 443 dbSNP
rs970036418 444 dbSNP
rs978706531 445 dbSNP
rs1226298655 454 dbSNP
rs1251365746 465 dbSNP
rs1319465406 482 dbSNP
rs926041758 490 dbSNP
rs1462134877 498 dbSNP
rs1263010901 499 dbSNP
rs956175991 502 dbSNP
rs1199125519 504 dbSNP
rs1341824343 505 dbSNP
rs1251541921 508 dbSNP
rs1252235887 509 dbSNP
rs1226235970 512 dbSNP
rs879362501 512 dbSNP
rs973047672 512 dbSNP
rs1195220842 524 dbSNP
rs989281928 526 dbSNP
rs1381989727 537 dbSNP
rs1332038666 539 dbSNP
rs1392936198 545 dbSNP
rs1396923871 547 dbSNP
rs919793220 549 dbSNP
rs922834317 564 dbSNP
rs1388448587 569 dbSNP
rs1426939185 582 dbSNP
rs1170083805 586 dbSNP
rs796730342 591 dbSNP
rs1445272873 593 dbSNP
rs1243075172 594 dbSNP
rs934144249 597 dbSNP
rs1467193509 598 dbSNP
rs1185975037 608 dbSNP
rs931158005 609 dbSNP
rs1251653823 615 dbSNP
rs1194923566 616 dbSNP
rs1050012909 617 dbSNP
rs911436647 622 dbSNP
rs979900695 624 dbSNP
rs1394330950 633 dbSNP
rs1246085963 638 dbSNP
rs1358037312 644 dbSNP
rs927036017 649 dbSNP
rs938370824 650 dbSNP
rs1336166914 656 dbSNP
rs941019733 657 dbSNP
rs1038070872 668 dbSNP
rs891444483 670 dbSNP
rs946344698 678 dbSNP
rs1425395172 681 dbSNP
rs1413147552 689 dbSNP
rs1162021175 696 dbSNP
rs768789196 697 dbSNP
rs1360384393 699 dbSNP
rs1181948810 700 dbSNP
rs1482241947 701 dbSNP
rs896797166 715 dbSNP
rs1270617404 721 dbSNP
rs529893734 723 dbSNP
rs548018900 724 dbSNP
rs186596319 739 dbSNP
rs996308898 746 dbSNP
rs1056611009 749 dbSNP
rs890580265 751 dbSNP
rs1226350224 762 dbSNP
rs896329009 765 dbSNP
rs1285493635 768 dbSNP
rs1405747687 777 dbSNP
rs1008929600 785 dbSNP
rs1321694687 788 dbSNP
rs1014953990 791 dbSNP
rs558114437 793 dbSNP
rs1011997404 795 dbSNP
rs962334933 825 dbSNP
rs1159008125 835 dbSNP
rs994823984 836 dbSNP
rs190599078 837 dbSNP
rs746063763 845 dbSNP
rs967907621 846 dbSNP
rs756567668 852 dbSNP
rs1272021509 853 dbSNP
rs1244568212 858 dbSNP
rs1217347395 861 dbSNP
rs952570918 863 dbSNP
rs1223743633 867 dbSNP
rs979933224 868 dbSNP
rs1206726167 874 dbSNP
rs927107629 895 dbSNP
rs534306573 896 dbSNP
rs1033036624 901 dbSNP
rs1222624130 904 dbSNP
rs992560887 908 dbSNP
rs956230498 911 dbSNP
rs182907895 912 dbSNP
rs574292807 913 dbSNP
rs1320555649 928 dbSNP
rs544779733 934 dbSNP
rs1262629811 937 dbSNP
rs1408818949 954 dbSNP
rs1177623359 956 dbSNP
rs187132338 959 dbSNP
rs955526798 960 dbSNP
rs111902299 964 dbSNP
rs926200616 966 dbSNP
rs780296099 967 dbSNP
rs1475487770 972 dbSNP
rs911380785 978 dbSNP
rs932234142 983 dbSNP
rs190995330 992 dbSNP
rs772345326 1005 dbSNP
rs1417299559 1008 dbSNP
rs1462616536 1013 dbSNP
rs182872951 1019 dbSNP
rs1039025489 1021 dbSNP
rs918294977 1023 dbSNP
rs749622609 1029 dbSNP
rs1056222330 1031 dbSNP
rs1008958829 1034 dbSNP
rs896203240 1048 dbSNP
rs1216547250 1049 dbSNP
rs1340202589 1050 dbSNP
rs1036870763 1052 dbSNP
rs1432924201 1055 dbSNP
rs1412583407 1057 dbSNP
rs897878881 1062 dbSNP
rs1447778613 1063 dbSNP
rs1415400668 1078 dbSNP
rs995254201 1080 dbSNP
rs1410150954 1087 dbSNP
rs1012046304 1088 dbSNP
rs1166210623 1089 dbSNP
rs1044901791 1093 dbSNP
rs1445849410 1094 dbSNP
rs903676505 1102 dbSNP
rs1181199204 1104 dbSNP
rs116457514 1105 dbSNP
rs1234366712 1105 dbSNP
rs1206953333 1106 dbSNP
rs1001444218 1109 dbSNP
rs1031327033 1110 dbSNP
rs187498040 1111 dbSNP
rs1010614084 1125 dbSNP
rs1314134756 1137 dbSNP
rs1029764821 1140 dbSNP
rs1216184919 1141 dbSNP
rs1348802568 1143 dbSNP
rs912981322 1156 dbSNP
rs1300290650 1158 dbSNP
rs1287939859 1161 dbSNP
rs1489377350 1162 dbSNP
rs1369566305 1163 dbSNP
rs955471325 1165 dbSNP
rs967117409 1166 dbSNP
rs978876783 1168 dbSNP
rs561406711 1172 dbSNP
rs192126583 1174 dbSNP
rs932266787 1180 dbSNP
rs1183680022 1183 dbSNP
rs1410004966 1187 dbSNP
rs747712940 1191 dbSNP
rs367859160 1214 dbSNP
rs1160247734 1216 dbSNP
rs1362900645 1217 dbSNP
rs962864285 1219 dbSNP
rs912120743 1224 dbSNP
rs974362592 1236 dbSNP
rs1311966194 1245 dbSNP
rs868151731 1249 dbSNP
rs569087502 1250 dbSNP
rs944886677 1251 dbSNP
rs533243677 1253 dbSNP
rs1309702771 1259 dbSNP
rs1229413334 1261 dbSNP
rs1350241137 1267 dbSNP
rs1036495320 1274 dbSNP
rs1406363643 1282 dbSNP
rs1365717008 1283 dbSNP
rs929678469 1289 dbSNP
rs992208907 1296 dbSNP
rs1227992899 1311 dbSNP
rs1455895253 1320 dbSNP
rs1281620115 1321 dbSNP
rs1311157359 1327 dbSNP
rs897906538 1338 dbSNP
rs930742064 1341 dbSNP
rs1409478685 1349 dbSNP
rs773300589 1353 dbSNP
rs917567762 1360 dbSNP
rs1268268349 1365 dbSNP
rs150618945 1369 dbSNP
rs34821679 1369 dbSNP
rs1345547961 1375 dbSNP
rs1190689011 1383 dbSNP
rs1263078264 1387 dbSNP
rs1487514967 1387 dbSNP
rs771472299 1389 dbSNP
rs1049562082 1403 dbSNP
rs905180721 1405 dbSNP
rs772987823 1407 dbSNP
rs569752000 1409 dbSNP
rs1212280626 1410 dbSNP
rs537071581 1411 dbSNP
rs552174639 1418 dbSNP
rs1384580102 1424 dbSNP
rs1480578211 1427 dbSNP
rs895701996 1430 dbSNP
rs1456610440 1435 dbSNP
rs1386246569 1438 dbSNP
rs1178348645 1442 dbSNP
rs1470065242 1443 dbSNP
rs1014506594 1449 dbSNP
rs1378440157 1449 dbSNP
rs1020116040 1454 dbSNP
rs967568192 1458 dbSNP
rs1189835590 1464 dbSNP
rs1464862112 1465 dbSNP
rs1052364366 1470 dbSNP
rs766545328 1474 dbSNP
rs1205968897 1479 dbSNP
rs571985747 1479 dbSNP
rs1346078086 1486 dbSNP
rs1255108925 1488 dbSNP
rs538922664 1491 dbSNP
rs1230600340 1503 dbSNP
rs1308786995 1504 dbSNP
rs978523924 1507 dbSNP
rs1173421971 1508 dbSNP
rs551353817 1512 dbSNP
rs1362951765 1527 dbSNP
rs1032664153 1532 dbSNP
rs892354423 1533 dbSNP
rs997429295 1541 dbSNP
rs566873137 1546 dbSNP
rs1030099461 1552 dbSNP
rs972435424 1553 dbSNP
rs1401231766 1554 dbSNP
rs1415855365 1555 dbSNP
rs1326246380 1558 dbSNP
rs1464715675 1560 dbSNP
rs1392208554 1562 dbSNP
rs891130880 1575 dbSNP
rs1007014723 1588 dbSNP
rs953066135 1595 dbSNP
rs534140233 1596 dbSNP
rs1255867908 1598 dbSNP
rs962875240 1601 dbSNP
rs1442827504 1604 dbSNP
rs1485613787 1605 dbSNP
rs1481423762 1624 dbSNP
rs555934765 1628 dbSNP
rs912151859 1630 dbSNP
rs17695156 1632 dbSNP
rs1339430844 1633 dbSNP
rs1317159704 1636 dbSNP
rs1245391274 1642 dbSNP
rs1339710218 1644 dbSNP
rs972680947 1651 dbSNP
rs1392881829 1688 dbSNP
rs919424771 1688 dbSNP
rs1165547359 1689 dbSNP
rs1368350856 1689 dbSNP
rs1491292788 1689 dbSNP
rs752224033 1689 dbSNP
rs759574733 1689 dbSNP
rs930749963 1689 dbSNP
rs1161963356 1691 dbSNP
rs1325632837 1691 dbSNP
rs1368843271 1691 dbSNP
rs1390650333 1691 dbSNP
rs1405985284 1691 dbSNP
rs1409404994 1691 dbSNP
rs1413124287 1691 dbSNP
rs141892069 1691 dbSNP
rs1459216763 1691 dbSNP
rs370717010 1691 dbSNP
rs538083123 1691 dbSNP
rs57242856 1691 dbSNP
rs66477981 1691 dbSNP
rs71952082 1691 dbSNP
rs878906899 1691 dbSNP
rs879030087 1691 dbSNP
rs879054378 1691 dbSNP
rs879232480 1691 dbSNP
rs1439825295 1693 dbSNP
rs951744984 1695 dbSNP
rs1471419916 1701 dbSNP
rs1248056360 1705 dbSNP
rs1198961902 1713 dbSNP
rs1450484192 1717 dbSNP
rs1491330654 1727 dbSNP
rs992402828 1727 dbSNP
rs1491344889 1728 dbSNP
rs895777647 1728 dbSNP
rs1014166700 1730 dbSNP
rs1270953254 1732 dbSNP
rs917620270 1746 dbSNP
rs556701369 1750 dbSNP
rs1348896549 1759 dbSNP
rs1276764410 1760 dbSNP
rs1307061188 1764 dbSNP
rs1437353171 1767 dbSNP
rs1330594211 1769 dbSNP
rs947714038 1778 dbSNP
rs759284146 1779 dbSNP
rs554229805 1785 dbSNP
rs980496806 1786 dbSNP
rs578083858 1791 dbSNP
rs1455919056 1793 dbSNP
rs1426849164 1797 dbSNP
rs1172782968 1799 dbSNP
rs1477445615 1812 dbSNP
rs1032734440 1813 dbSNP
rs1193358252 1820 dbSNP
rs1190484992 1821 dbSNP
rs1465307006 1825 dbSNP
rs1247700955 1827 dbSNP
rs936536706 1831 dbSNP
rs1478795103 1833 dbSNP
rs1325346387 1837 dbSNP
rs761823196 1838 dbSNP
rs953097049 1842 dbSNP
rs1220004258 1844 dbSNP
rs1344465064 1845 dbSNP
rs1165853680 1847 dbSNP
rs1418351908 1849 dbSNP
rs1366568338 1851 dbSNP
rs1465635185 1852 dbSNP
rs1052668711 1854 dbSNP
rs1433427223 1857 dbSNP
rs1361251024 1858 dbSNP
rs1334444404 1866 dbSNP
rs892281607 1867 dbSNP
rs933274071 1869 dbSNP
rs985759652 1870 dbSNP
rs1018562345 1873 dbSNP
rs1169968482 1882 dbSNP
rs1051674627 1894 dbSNP
rs891140802 1895 dbSNP
rs1186590042 1911 dbSNP
rs1006857829 1915 dbSNP
rs1326307961 1931 dbSNP
rs1484135871 1934 dbSNP
rs1237816678 1941 dbSNP
rs1209104484 1947 dbSNP
rs1332668987 1949 dbSNP
rs1278383903 1953 dbSNP
rs1230723468 1962 dbSNP
rs1039830657 1972 dbSNP
rs1297593748 1976 dbSNP
rs898555397 1978 dbSNP
rs919442920 1979 dbSNP
rs995593857 1982 dbSNP
rs545704264 1983 dbSNP
rs553998220 1984 dbSNP
rs572515373 1988 dbSNP
rs1357073829 1992 dbSNP
rs1309407245 2000 dbSNP
rs1361547369 2005 dbSNP
rs926698171 2012 dbSNP
rs1369369301 2018 dbSNP
rs1166696266 2032 dbSNP
rs1425511121 2034 dbSNP
rs1025146608 2035 dbSNP
rs757383536 2041 dbSNP
rs1471657163 2043 dbSNP
rs1255740544 2045 dbSNP
rs1207550311 2053 dbSNP
rs182366369 2058 dbSNP
rs188339145 2060 dbSNP
rs35301719 2065 dbSNP
rs1041655804 2066 dbSNP
rs1324063795 2068 dbSNP
rs371832106 2077 dbSNP
rs903069086 2088 dbSNP
rs1000039371 2099 dbSNP
rs1213679822 2099 dbSNP
rs1291024793 2100 dbSNP
rs958055658 2101 dbSNP
rs1453614285 2105 dbSNP
rs1410031419 2107 dbSNP
rs888902219 2114 dbSNP
rs1191500966 2117 dbSNP
rs987906150 2118 dbSNP
rs1241105419 2119 dbSNP
rs566190410 2122 dbSNP
rs767489810 2126 dbSNP
rs1477959492 2140 dbSNP
rs1403459097 2142 dbSNP
rs1018593269 2148 dbSNP
rs965722062 2158 dbSNP
rs930671446 2162 dbSNP
rs1051685579 2165 dbSNP
rs1251309787 2198 dbSNP
rs1175562835 2199 dbSNP
rs1489473287 2200 dbSNP
rs1266606248 2204 dbSNP
rs910449750 2208 dbSNP
rs528963686 2210 dbSNP
rs1270442997 2213 dbSNP
rs1229348397 2217 dbSNP
rs1328050609 2221 dbSNP
rs1255271203 2225 dbSNP
rs117750315 2231 dbSNP
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rs1026576055 2241 dbSNP
rs1392800903 2247 dbSNP
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rs1039758579 2259 dbSNP
rs898475926 2264 dbSNP
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rs1360089914 2281 dbSNP
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rs887281192 2302 dbSNP
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rs1209762372 2325 dbSNP
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rs969583275 2383 dbSNP
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rs1242772769 2603 dbSNP
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rs1200494494 2627 dbSNP
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rs1009213931 2645 dbSNP
rs1021138044 2647 dbSNP
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rs1417555437 2662 dbSNP
rs1441249356 2670 dbSNP
rs987203285 2675 dbSNP
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rs964530179 2678 dbSNP
rs1252002305 2683 dbSNP
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rs920482788 2697 dbSNP
rs978154881 2699 dbSNP
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rs576108543 2712 dbSNP
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rs1027997107 2990 dbSNP
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rs558491373 3003 dbSNP
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rs1382281145 3210 dbSNP
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rs978228262 3770 dbSNP
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rs137871028 3824 dbSNP
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rs754244360 3839 dbSNP
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rs190305883 3863 dbSNP
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rs1457734264 3876 dbSNP
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rs886158687 3897 dbSNP
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rs1259735111 4060 dbSNP
rs376655576 4062 dbSNP
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rs1347807237 4094 dbSNP
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rs541984517 4099 dbSNP
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rs1221317252 4172 dbSNP
rs779428021 4174 dbSNP
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rs1283858004 4400 dbSNP
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rs1276535021 4574 dbSNP
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rs780249792 4604 dbSNP
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rs186243281 4696 dbSNP
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rs1289410703 4783 dbSNP
rs143945325 4792 dbSNP
rs1040494856 4797 dbSNP
rs941422920 4799 dbSNP
rs1352894473 4801 dbSNP
rs901956760 4804 dbSNP
rs1157853051 4815 dbSNP
rs1379877864 4829 dbSNP
rs1240091821 4831 dbSNP
rs1420589340 4833 dbSNP
rs189979765 4835 dbSNP
rs1038413380 4839 dbSNP
rs1160353080 4839 dbSNP
rs148772817 4841 dbSNP
rs1321137641 4843 dbSNP
rs1383463168 4849 dbSNP
rs1385075752 4852 dbSNP
rs1395526357 4858 dbSNP
rs1157484017 4864 dbSNP
rs1335521921 4869 dbSNP
rs532345480 4874 dbSNP
rs1029614457 4875 dbSNP
rs1445083366 4876 dbSNP
rs948706681 4885 dbSNP
rs1308937473 4888 dbSNP
rs541132764 4888 dbSNP
rs1377212909 4889 dbSNP
rs112009278 4897 dbSNP
rs372190521 4909 dbSNP
rs1264037256 4922 dbSNP
rs1215906057 4923 dbSNP
rs1003382521 4924 dbSNP
rs1283074776 4926 dbSNP
rs1052698491 4931 dbSNP
rs1344723189 4936 dbSNP
rs530275188 4943 dbSNP
rs1229190735 4948 dbSNP
rs1010597192 4949 dbSNP
rs180778211 4950 dbSNP
rs1397576001 4954 dbSNP
rs1377270800 4957 dbSNP
rs1313376382 4958 dbSNP
rs961708624 4964 dbSNP
rs1169391147 4965 dbSNP
rs1422828271 4965 dbSNP
rs570360698 4967 dbSNP
rs963697730 4968 dbSNP
rs564786570 4975 dbSNP
rs1456358937 4978 dbSNP
rs928292192 4979 dbSNP
rs768664505 4983 dbSNP
rs958473617 4987 dbSNP
rs1442303719 4988 dbSNP
rs1276949659 4991 dbSNP
rs955773180 4992 dbSNP
rs186269389 4993 dbSNP
rs1277173895 4994 dbSNP
rs150910327 4996 dbSNP
rs1293317914 4997 dbSNP
rs571264449 4998 dbSNP
rs1465652997 4999 dbSNP
rs1357292632 5000 dbSNP
rs878917590 5001 dbSNP
rs947207219 5006 dbSNP
rs1042029660 5007 dbSNP
rs1173205052 5011 dbSNP
rs1410314252 5012 dbSNP
rs915970906 5020 dbSNP
rs1408982567 5026 dbSNP
rs1464478433 5028 dbSNP
rs948758395 5032 dbSNP
rs924493479 5034 dbSNP
rs939260368 5045 dbSNP
rs1207148129 5046 dbSNP
rs1458469204 5049 dbSNP
rs1257086551 5061 dbSNP
rs1052250845 5062 dbSNP
rs1393498690 5064 dbSNP
rs943923318 5065 dbSNP
rs1289977957 5068 dbSNP
rs1298812322 5073 dbSNP
rs1376964352 5078 dbSNP
rs1281210816 5082 dbSNP
rs1442714760 5083 dbSNP
rs1375851932 5096 dbSNP
rs1040420485 5097 dbSNP
rs1330125499 5105 dbSNP
rs1396885962 5109 dbSNP
rs199887064 5109 dbSNP
rs1179440119 5110 dbSNP
rs1246916211 5110 dbSNP
rs1404834759 5110 dbSNP
rs1469546546 5110 dbSNP
rs147945503 5110 dbSNP
rs34300207 5110 dbSNP
rs397850029 5110 dbSNP
rs397850597 5110 dbSNP
rs398019630 5110 dbSNP
rs757766185 5110 dbSNP
rs878876805 5110 dbSNP
rs1220277589 5111 dbSNP
rs1491154951 5111 dbSNP
rs1284598779 5112 dbSNP
rs1316010487 5113 dbSNP
rs1197867131 5114 dbSNP
rs1319375662 5121 dbSNP
rs1258466571 5125 dbSNP
rs3837462 5125 dbSNP
rs1458973378 5126 dbSNP
rs1240822591 5128 dbSNP
rs1234185418 5129 dbSNP
rs1379175614 5130 dbSNP
rs1265589755 5131 dbSNP
rs1437232654 5132 dbSNP
rs1432782867 5137 dbSNP
rs1199704848 5139 dbSNP
rs1435910002 5155 dbSNP
rs1348229037 5172 dbSNP
rs1431467663 5176 dbSNP
rs1477131032 5177 dbSNP
rs1420843730 5182 dbSNP
rs1267665454 5192 dbSNP
rs1380166131 5192 dbSNP
rs1455854897 5192 dbSNP
rs901840729 5195 dbSNP
rs1487274767 5198 dbSNP
rs1170680944 5204 dbSNP
rs1424952402 5205 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000426431.2 | 3UTR | GCCCUUUGCAUAGCUCUCCUUCCCCCUCACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
63 hsa-miR-4749-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT082256 MED29 mediator complex subunit 29 2 4
MIRT112161 OTUD3 OTU deubiquitinase 3 2 2
MIRT150036 MIDN midnolin 2 2
MIRT246308 HIST2H2AA3 histone cluster 2 H2A family member a3 2 4
MIRT246320 HIST2H2AA4 histone cluster 2 H2A family member a4 2 4
MIRT248254 SP1 Sp1 transcription factor 2 2
MIRT257944 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT466973 STARD7 StAR related lipid transfer domain containing 7 2 4
MIRT492322 SETD1B SET domain containing 1B 2 2
MIRT496204 EFCAB1 EF-hand calcium binding domain 1 2 2
MIRT497568 CCR6 C-C motif chemokine receptor 6 2 2
MIRT502990 CCDC71L coiled-coil domain containing 71 like 2 8
MIRT508300 SIX5 SIX homeobox 5 2 4
MIRT522472 ZAK mitogen-activated protein kinase kinase kinase 20 2 2
MIRT525825 VIMP selenoprotein S 2 4
MIRT528154 BCL2L1 BCL2 like 1 2 2
MIRT532606 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT551302 RPRM reprimo, TP53 dependent G2 arrest mediator homolog 2 2
MIRT568777 FAM53C family with sequence similarity 53 member C 2 6
MIRT570896 METTL21A methyltransferase like 21A 2 2
MIRT570963 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT571167 ZNF85 zinc finger protein 85 2 2
MIRT576751 Tmem127 transmembrane protein 127 2 2
MIRT609854 DAZAP2 DAZ associated protein 2 2 2
MIRT627101 PDRG1 p53 and DNA damage regulated 1 2 2
MIRT637060 PRKAG1 protein kinase AMP-activated non-catalytic subunit gamma 1 2 2
MIRT639423 PKP1 plakophilin 1 2 2
MIRT643208 TYW3 tRNA-yW synthesizing protein 3 homolog 2 4
MIRT646251 PRSS38 protease, serine 38 2 2
MIRT647145 CYP27C1 cytochrome P450 family 27 subfamily C member 1 2 2
MIRT647429 ZKSCAN2 zinc finger with KRAB and SCAN domains 2 2 2
MIRT650666 GAPDHP44 glyceraldehyde 3 phosphate dehydrogenase pseudogene 44 2 2
MIRT651816 USP49 ubiquitin specific peptidase 49 2 2
MIRT657376 HMGA1 high mobility group AT-hook 1 2 2
MIRT658105 FOXK1 forkhead box K1 2 2
MIRT658161 FCHSD1 FCH and double SH3 domains 1 2 2
MIRT662754 LRRC3C leucine rich repeat containing 3C 2 2
MIRT667209 NIPAL1 NIPA like domain containing 1 2 2
MIRT687003 RPL35 ribosomal protein L35 2 2
MIRT707057 NACC2 NACC family member 2 2 2
MIRT709048 MRO maestro 2 2
MIRT709054 MGAT5B mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B 2 2
MIRT709446 VWA2 von Willebrand factor A domain containing 2 2 2
MIRT709847 SNX12 sorting nexin 12 2 2
MIRT710790 IFNLR1 interferon lambda receptor 1 2 2
MIRT711696 GMPR guanosine monophosphate reductase 2 2
MIRT712462 KCNC3 potassium voltage-gated channel subfamily C member 3 2 2
MIRT713884 MOB3A MOB kinase activator 3A 2 2
MIRT715329 NTN1 netrin 1 2 2
MIRT715927 CHD4 chromodomain helicase DNA binding protein 4 2 2
MIRT716533 ATF5 activating transcription factor 5 2 2
MIRT716937 CACNB1 calcium voltage-gated channel auxiliary subunit beta 1 2 2
MIRT717007 MFSD6 major facilitator superfamily domain containing 6 2 2
MIRT719139 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT720853 MEF2D myocyte enhancer factor 2D 2 2
MIRT721484 LTB4R2 leukotriene B4 receptor 2 2 2
MIRT721517 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT722895 LRRC20 leucine rich repeat containing 20 2 2
MIRT723066 GGA1 golgi associated, gamma adaptin ear containing, ARF binding protein 1 2 2
MIRT723086 INSIG1 insulin induced gene 1 2 2
MIRT723353 ASCL2 achaete-scute family bHLH transcription factor 2 2 2
MIRT723483 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT724576 NOTCH2 notch 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4749 Fluorouracil 3385 NSC19893 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-mir-4749 Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-mir-4749 Paclitaxel 36314 NSC125973 approved resistant cell line (W1)
hsa-miR-4749-3p Cisplatin 5460033 NSC119875 approved resistant High Hypopharyngeal Cancer cell line (FaDu)
hsa-miR-4749-3p Tamoxifen+Fulvestrant sensitive cell line (LCC9)
hsa-miR-4749-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-4749-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-4749-3p Cisplatin 5460033 NSC119875 approved resistant cell line (OVSAHO)
hsa-miR-4749-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (TOV-112D)

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