miRTarBase - #MIRT248326


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pre-miRNA Information
pre-miRNA hsa-mir-3170   
Genomic Coordinates chr13: 98208524 - 98208600
Description Homo sapiens miR-3170 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3170
Sequence 10| CUGGGGUUCUGAGACAGACAGU |31
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1393550535 3 dbSNP
rs1477436820 6 dbSNP
rs1291786017 11 dbSNP
rs528268116 15 dbSNP
rs1425176334 18 dbSNP
rs1351740752 19 dbSNP
rs1465654929 19 dbSNP
rs147240207 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol HOXC8   
Synonyms HOX3, HOX3A
Description homeobox C8
Transcript NM_022658   
Expression
Putative miRNA Targets on HOXC8
3'UTR of HOXC8
(miRNA target sites are highlighted)		 
>HOXC8|NM_022658|3'UTR
   1 GCAAAAAAGAAAGACCCCCCCCCCCTTAGCAACTCCCTTGAAGTTTCGTTTTATGGTAGCAGATAAATTGAGAAGTTTAC
  81 GACTGTCATTTGCTTTTATAGAGAATAGAATGACACTCACAACTCTAACTACCTGTCAGATACTTGCAGCTCTGGTTTTA
 161 TTACCTTTGGACTTCCCCCACTCTTTATTTGTTTGGGGGCTGGAGGGGGGAGACGGAGAAACAGTGAAAAGTTCGGACTC
 241 TCTGTCTCACTCCTTGCCCCACACACACTTGTCCCTGCCCCCACCCTTCTGAGTCCTTCCTGGATTTTAAGGTCTGAGAC
 321 CTGGCCTCCGTGCTCCTCGGTCTGTCTCTCACCACACTCCCACCTCCCTGCTTCTCTGGTATTTATTTTAGAGGGGAGCC
 401 CCCTCGAAATGCAGAAAAGGACTTGTGGTTTTGTTTTTATGCTAAGGCTAGTGTACTAGATGTACTTTTTCTAAAAAGGA
 481 AAGGACAGAAAAAAATGAAGAAAGGAAAGGAAGACAAATGTAAAGAAATAAGGAAAAAAGCAAGGAATATCCCCTCCCCC
 561 TCCCCCTCCCCCTCCCCAGGGCTCCCTGCTTAGAAAAACCCCCTTGACTTTCTCTAGGAACCTGATGGAAACCTGAAGGA
 641 GATGTGGGTCTTTCCCCTCCCCCCATTTCCAGAAGGGTAGATAGGAGCCTGCAGTCGCCTCTAAAATCCTACCTAACCAT
 721 CCCATGGTCACTCGGGCCCATGCCTTCCTCTCCTTCGCTGTTTGATTTCTATTCTGTTGGGCCCGCCTTCCTCTGAGCTG
 801 CATTAGTGTTAGTGCTCAGAAATCACCATAATCACGAAAATAATAATAATAAATCTTTAACATACTACCTAAAGGGAACC
 881 TGCAATAATCTTGAAAAAGAAAAAGAGAAAAATTTTAAAATCCTGCTATAGGAGAAAAAAAGAGAAAAAAATAAAAATCA
 961 AAAAAAAAAAAAAGAAAGAAAGAAACCTCCAGCGTATTTTATCACTACCTATAGAAAGAAATCCTGCTTTGAGAGTATTT
1041 GTAATGCGGTTTTGTTGTCGTTTGTTGCTGCTTATTTCACTAAGAAAACCCAACAACTGAGACTGCCTAGCCCGCCGGTC
1121 CTGTGCGCTTTTATTGTGCTTCTAACCCCAGTAGAGTAGAACTAAATTGCACTGAATGTATAGTTAACTCTGTCTTGAAT
1201 TCTCTGTTTATGCAATGTGCTCGAAAGAAAAAAATGTTAAAAATATATCTATAATAATAATTTTTTGTCATTTGTCTTTA
1281 TGTCCAGCTATGAATGTAGATTTTGTGTCCCGACAGCCCTGTTCCTGGTCCAAGTACTTTGTATTGTATACGTGAGTCAT
1361 AATAATAAAAAGAAGAAGAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ugacaGACA-GAGUCUUGGGGUc 5'
               :||| ||:  ||||||| 
Target 5' ttttaTTGTGCTTCTAACCCCAg 3'
 1129 - 1151 153.00 -18.40
2 
miRNA  3' ugacaGACAGAGUC---UUGGGGuc 5'
               ||| ||:||   ||||||  
Target 5' gctccCTG-CTTAGAAAAACCCCct 3'
 581 - 604 136.00 -16.80
3 
miRNA  3' ugaCAGACAGAG-UCUUGGGGUc 5'
             ||| | ||| | ||:||:| 
Target 5' gcaGTC-GCCTCTAAAATCCTAc 3'
 691 - 712 126.00 -11.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN28877271 17 COSMIC
COSN30183035 20 COSMIC
COSN30475167 23 COSMIC
COSN13404745 25 COSMIC
COSN17685096 26 COSMIC
COSN20109650 26 COSMIC
COSN5853124 28 COSMIC
COSN26979230 33 COSMIC
COSN30157612 36 COSMIC
COSN31580694 52 COSMIC
COSN17182712 82 COSMIC
COSN30149865 104 COSMIC
COSN31510392 144 COSMIC
COSN17132534 173 COSMIC
COSN30479389 177 COSMIC
COSN30459807 179 COSMIC
COSN30186913 180 COSMIC
COSN30540568 200 COSMIC
COSN18736841 305 COSMIC
COSN25634736 574 COSMIC
COSN31960797 586 COSMIC
COSN4703064 673 COSMIC
COSN30544260 688 COSMIC
COSN31515235 888 COSMIC
COSN16622007 906 COSMIC
COSN31607884 908 COSMIC
COSN32063712 953 COSMIC
COSN28826882 959 COSMIC
COSN19656442 974 COSMIC
COSN20109654 974 COSMIC
COSN26505421 975 COSMIC
COSN8339970 1041 COSMIC
COSN27388888 1127 COSMIC
COSN31490731 1155 COSMIC
COSN31489634 1208 COSMIC
COSN31570425 1261 COSMIC
COSN31485543 1263 COSMIC
COSN28201835 1306 COSMIC
COSN8586354 1313 COSMIC
COSN20092579 1353 COSMIC
COSN31528062 1369 COSMIC
COSN32056621 1370 COSMIC
COSN31603108 1372 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1450626585 3 dbSNP
rs1419518499 6 dbSNP
rs755196174 7 dbSNP
rs778876885 10 dbSNP
rs1268377040 14 dbSNP
rs747993663 14 dbSNP
rs776089647 14 dbSNP
rs1491480531 15 dbSNP
rs375330102 15 dbSNP
rs534181903 15 dbSNP
rs558229116 15 dbSNP
rs560386503 15 dbSNP
rs758594646 15 dbSNP
rs569341279 16 dbSNP
rs919343727 16 dbSNP
rs758104186 17 dbSNP
rs777820655 18 dbSNP
rs1178593674 19 dbSNP
rs755054190 20 dbSNP
rs905207946 20 dbSNP
rs781620506 21 dbSNP
rs1056660199 22 dbSNP
rs527829808 22 dbSNP
rs748659517 23 dbSNP
rs770479099 23 dbSNP
rs1181637988 24 dbSNP
rs200035305 24 dbSNP
rs201173990 25 dbSNP
rs386763147 25 dbSNP
rs35378573 26 dbSNP
rs398019654 26 dbSNP
rs4142680 26 dbSNP
rs775291126 26 dbSNP
rs1333246117 27 dbSNP
rs1480079268 31 dbSNP
rs926467312 31 dbSNP
rs762289035 35 dbSNP
rs1443968133 38 dbSNP
rs760209116 44 dbSNP
rs370624442 48 dbSNP
rs937881585 49 dbSNP
rs1306233583 50 dbSNP
rs1366339552 63 dbSNP
rs1164577726 65 dbSNP
rs116334238 69 dbSNP
rs915165769 81 dbSNP
rs945049190 82 dbSNP
rs1177249653 88 dbSNP
rs1439168445 97 dbSNP
rs1253775192 104 dbSNP
rs1211699130 108 dbSNP
rs1487653896 125 dbSNP
rs1042460736 126 dbSNP
rs1350172801 126 dbSNP
rs1354094322 127 dbSNP
rs961320268 131 dbSNP
rs550220697 133 dbSNP
rs11170784 153 dbSNP
rs1486048519 161 dbSNP
rs919755329 172 dbSNP
rs530815344 173 dbSNP
rs1387987491 178 dbSNP
rs1388170361 182 dbSNP
rs1360680093 190 dbSNP
rs1292531196 200 dbSNP
rs1420706305 205 dbSNP
rs376723569 207 dbSNP
rs371009456 208 dbSNP
rs1048628606 209 dbSNP
rs1201140215 210 dbSNP
rs544820422 211 dbSNP
rs937994612 213 dbSNP
rs888711594 216 dbSNP
rs1004195294 225 dbSNP
rs1488498508 232 dbSNP
rs1287980272 233 dbSNP
rs776252828 235 dbSNP
rs1352959590 236 dbSNP
rs1256485824 238 dbSNP
rs1234810627 241 dbSNP
rs1452334137 251 dbSNP
rs1300169211 258 dbSNP
rs1056418415 262 dbSNP
rs970752874 263 dbSNP
rs1003577088 268 dbSNP
rs1033764894 269 dbSNP
rs918160473 283 dbSNP
rs945623442 285 dbSNP
rs1464624381 290 dbSNP
rs959179634 310 dbSNP
rs1171475975 312 dbSNP
rs904032490 313 dbSNP
rs146077521 315 dbSNP
rs915134069 330 dbSNP
rs533674404 331 dbSNP
rs977744660 338 dbSNP
rs911553038 339 dbSNP
rs555017651 340 dbSNP
rs1038798176 350 dbSNP
rs1019331945 351 dbSNP
rs1399807831 357 dbSNP
rs961278346 358 dbSNP
rs1336725673 362 dbSNP
rs1406685098 363 dbSNP
rs1394873300 373 dbSNP
rs1402105284 376 dbSNP
rs921710133 383 dbSNP
rs527319199 386 dbSNP
rs1170166312 393 dbSNP
rs1474961695 396 dbSNP
rs1368906016 397 dbSNP
rs1435239844 401 dbSNP
rs1321782552 406 dbSNP
rs1440673907 409 dbSNP
rs1368043679 412 dbSNP
rs932779516 420 dbSNP
rs1244427763 423 dbSNP
rs1458676089 424 dbSNP
rs1026788747 425 dbSNP
rs1283911059 427 dbSNP
rs1213559307 428 dbSNP
rs1356612623 434 dbSNP
rs1286388655 438 dbSNP
rs1243043590 448 dbSNP
rs139313620 473 dbSNP
rs1332587577 480 dbSNP
rs1449121150 487 dbSNP
rs1398117499 490 dbSNP
rs1330757392 497 dbSNP
rs979982860 498 dbSNP
rs1282466530 500 dbSNP
rs888666914 504 dbSNP
rs926696461 505 dbSNP
rs1004879610 518 dbSNP
rs1471663895 520 dbSNP
rs560863597 520 dbSNP
rs1384554231 521 dbSNP
rs959482114 527 dbSNP
rs992082129 534 dbSNP
rs1037321137 535 dbSNP
rs1203195659 537 dbSNP
rs1451873454 548 dbSNP
rs1359112075 551 dbSNP
rs917924581 551 dbSNP
rs945621170 551 dbSNP
rs1043051563 553 dbSNP
rs1209499551 555 dbSNP
rs1383280045 556 dbSNP
rs1443979829 556 dbSNP
rs1249806986 557 dbSNP
rs1279087982 558 dbSNP
rs925583726 559 dbSNP
rs936823164 561 dbSNP
rs1163664728 562 dbSNP
rs537808951 563 dbSNP
rs1186770685 565 dbSNP
rs1421505924 566 dbSNP
rs879062586 568 dbSNP
rs1176166278 571 dbSNP
rs1478046893 573 dbSNP
rs759470150 574 dbSNP
rs12814340 575 dbSNP
rs1196238856 576 dbSNP
rs1490082738 577 dbSNP
rs1317120638 578 dbSNP
rs1458541083 579 dbSNP
rs1410833382 580 dbSNP
rs1457298961 584 dbSNP
rs1284129250 588 dbSNP
rs1219906368 594 dbSNP
rs1369743631 595 dbSNP
rs556188539 601 dbSNP
rs1273306190 605 dbSNP
rs867278617 608 dbSNP
rs1341349904 616 dbSNP
rs1298635884 619 dbSNP
rs906541699 619 dbSNP
rs1003523096 633 dbSNP
rs1403282915 644 dbSNP
rs1401585628 650 dbSNP
rs1358581858 654 dbSNP
rs889539170 659 dbSNP
rs775387857 660 dbSNP
rs1170281727 662 dbSNP
rs959460978 677 dbSNP
rs1334119046 689 dbSNP
rs1040696609 690 dbSNP
rs749725474 698 dbSNP
rs896826415 710 dbSNP
rs1487482062 712 dbSNP
rs1242055656 714 dbSNP
rs1211354173 715 dbSNP
rs1314458925 718 dbSNP
rs1276663319 721 dbSNP
rs994073452 730 dbSNP
rs1277987263 734 dbSNP
rs1328822143 735 dbSNP
rs1229253257 738 dbSNP
rs1010715882 741 dbSNP
rs1027298348 755 dbSNP
rs73313182 757 dbSNP
rs1199768941 758 dbSNP
rs1448739245 785 dbSNP
rs966616358 786 dbSNP
rs1468792468 787 dbSNP
rs1443908685 791 dbSNP
rs1172298403 795 dbSNP
rs144078770 798 dbSNP
rs1250612082 800 dbSNP
rs1182794322 803 dbSNP
rs911850255 808 dbSNP
rs1236203459 809 dbSNP
rs965690791 827 dbSNP
rs974421088 836 dbSNP
rs921659334 837 dbSNP
rs549566934 839 dbSNP
rs930384369 849 dbSNP
rs959415525 850 dbSNP
rs992216667 850 dbSNP
rs1228642168 856 dbSNP
rs1024953541 862 dbSNP
rs1312764112 863 dbSNP
rs984272791 873 dbSNP
rs910033612 879 dbSNP
rs940243917 880 dbSNP
rs1037671693 883 dbSNP
rs1332784441 889 dbSNP
rs1416510770 896 dbSNP
rs1353540152 897 dbSNP
rs1165983149 900 dbSNP
rs906821812 903 dbSNP
rs1306484300 912 dbSNP
rs544850784 913 dbSNP
rs1350274488 917 dbSNP
rs1410616468 918 dbSNP
rs1290480151 920 dbSNP
rs1383947504 932 dbSNP
rs192449987 932 dbSNP
rs1183457085 935 dbSNP
rs1440404250 935 dbSNP
rs1232690048 943 dbSNP
rs1266219157 945 dbSNP
rs1275357017 945 dbSNP
rs1480451761 945 dbSNP
rs1323225234 953 dbSNP
rs934822518 953 dbSNP
rs1289505899 958 dbSNP
rs1491142562 958 dbSNP
rs767808027 958 dbSNP
rs1055035046 959 dbSNP
rs1310881604 959 dbSNP
rs1389147359 959 dbSNP
rs368097239 959 dbSNP
rs771632416 959 dbSNP
rs11444199 960 dbSNP
rs1179786610 960 dbSNP
rs1382668801 960 dbSNP
rs1491484394 960 dbSNP
rs77729302 960 dbSNP
rs878949011 960 dbSNP
rs1273590984 961 dbSNP
rs1491566799 961 dbSNP
rs1193062466 962 dbSNP
rs1483277047 964 dbSNP
rs1206815356 965 dbSNP
rs978148491 965 dbSNP
rs1316366106 966 dbSNP
rs1266387158 967 dbSNP
rs1432075841 968 dbSNP
rs1199032655 970 dbSNP
rs1301548783 971 dbSNP
rs1302964348 971 dbSNP
rs1343243100 971 dbSNP
rs1378863208 972 dbSNP
rs796284080 972 dbSNP
rs1479259029 973 dbSNP
rs1167294695 974 dbSNP
rs77153785 974 dbSNP
rs79679701 975 dbSNP
rs1430848392 976 dbSNP
rs1310063046 979 dbSNP
rs1388919862 983 dbSNP
rs1378344135 989 dbSNP
rs572249872 994 dbSNP
rs925519751 995 dbSNP
rs936981259 995 dbSNP
rs543163396 1000 dbSNP
rs1055066999 1002 dbSNP
rs1263781661 1007 dbSNP
rs1203242316 1012 dbSNP
rs985589772 1013 dbSNP
rs895195429 1024 dbSNP
rs1256137245 1035 dbSNP
rs1324212896 1038 dbSNP
rs1332928872 1048 dbSNP
rs1011414354 1049 dbSNP
rs1219648601 1050 dbSNP
rs1296833140 1055 dbSNP
rs1342579161 1060 dbSNP
rs182733929 1061 dbSNP
rs1040832430 1080 dbSNP
rs1263307170 1081 dbSNP
rs896924736 1088 dbSNP
rs1428890678 1095 dbSNP
rs1468263623 1095 dbSNP
rs1171584645 1100 dbSNP
rs902340354 1107 dbSNP
rs1190742577 1114 dbSNP
rs531616548 1115 dbSNP
rs146523694 1117 dbSNP
rs999388255 1118 dbSNP
rs1018847114 1121 dbSNP
rs1459545127 1123 dbSNP
rs1210073477 1125 dbSNP
rs929618089 1127 dbSNP
rs148698267 1128 dbSNP
rs771617089 1146 dbSNP
rs974368911 1148 dbSNP
rs1315382739 1152 dbSNP
rs1001415308 1163 dbSNP
rs142212620 1165 dbSNP
rs951779584 1167 dbSNP
rs984945372 1170 dbSNP
rs1390156725 1172 dbSNP
rs772973141 1183 dbSNP
rs547667489 1189 dbSNP
rs760080757 1203 dbSNP
rs187964390 1211 dbSNP
rs530198792 1223 dbSNP
rs928195766 1224 dbSNP
rs1178689929 1228 dbSNP
rs1242051239 1228 dbSNP
rs1439232912 1235 dbSNP
rs759918752 1237 dbSNP
rs1270400451 1239 dbSNP
rs879683932 1243 dbSNP
rs767996294 1246 dbSNP
rs1195611637 1248 dbSNP
rs1357426366 1251 dbSNP
rs1433049633 1254 dbSNP
rs1025468989 1255 dbSNP
rs548679363 1257 dbSNP
rs1310143881 1261 dbSNP
rs1365920490 1268 dbSNP
rs1334222354 1270 dbSNP
rs567307738 1273 dbSNP
rs1328366506 1280 dbSNP
rs966854568 1282 dbSNP
rs537540945 1287 dbSNP
rs1055012782 1291 dbSNP
rs1032348527 1293 dbSNP
rs958240333 1297 dbSNP
rs985720701 1298 dbSNP
rs1470852621 1300 dbSNP
rs895140016 1306 dbSNP
rs556167316 1312 dbSNP
rs61921780 1313 dbSNP
rs1451821941 1318 dbSNP
rs1326439708 1331 dbSNP
rs976946833 1341 dbSNP
rs1359410987 1343 dbSNP
rs1207620342 1345 dbSNP
rs533513524 1352 dbSNP
rs1317798967 1353 dbSNP
rs765174294 1353 dbSNP
rs1191070921 1354 dbSNP
rs1437529214 1364 dbSNP
rs1347597039 1370 dbSNP
rs929781220 1375 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545217. RNA binding protein: AGO2. Condition:miR-7 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ugacaGACA-GAGUCUUGGgguc 5'
               :||| ||:  ||||    
Target 5' uuuuaUUGUGCUUCUAACC---- 3'
 		2 - 20
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545217
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-7 transfection
Location of target site ENST00000040584.4 | 3UTR | CUUUUAUUGUGCUUCUAACC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
KIRC -0.404 0 -0.291 0.01 67 Click to see details
BRCA -0.3 0.01 -0.305 0.01 69 Click to see details
LIHC -0.16 0.14 -0.063 0.34 48 Click to see details
KIRP 0.18 0.16 0.179 0.16 32 Click to see details
KICH 0.212 0.17 0.206 0.17 23 Click to see details
PRAD -0.228 0.18 -0.055 0.41 18 Click to see details
UCEC -0.196 0.22 -0.170 0.25 18 Click to see details
CHOL 0.256 0.27 0.006 0.49 8 Click to see details
THCA -0.077 0.28 -0.120 0.18 59 Click to see details
STAD -0.111 0.35 -0.257 0.18 15 Click to see details
ESCA -0.178 0.35 -0.500 0.13 7 Click to see details
LUSC -0.063 0.37 -0.117 0.27 31 Click to see details
BLCA 0.115 0.39 0.024 0.48 8 Click to see details
HNSC -0.009 0.48 -0.053 0.41 21 Click to see details
HNSC -0.009 0.48 -0.053 0.41 21 Click to see details
HNSC -0.009 0.48 -0.053 0.41 21 Click to see details
HNSC -0.009 0.48 -0.053 0.41 21 Click to see details
HNSC -0.009 0.48 -0.053 0.41 21 Click to see details
121 hsa-miR-3170 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074402 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT114937 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT248326 HOXC8 homeobox C8 2 2
MIRT329432 C5ORF51 chromosome 5 open reading frame 51 2 2
MIRT460868 UBE2S ubiquitin conjugating enzyme E2 S 2 2
MIRT464626 UBE4A ubiquitination factor E4A 2 2
MIRT466225 TMED10 transmembrane p24 trafficking protein 10 2 2
MIRT473424 MDM4 MDM4, p53 regulator 2 2
MIRT473514 MAX MYC associated factor X 2 2
MIRT475798 HDGF heparin binding growth factor 2 2
MIRT478032 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT482963 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT485905 PGPEP1 pyroglutamyl-peptidase I 2 6
MIRT488146 PRRC2B proline rich coiled-coil 2B 2 4
MIRT491777 ZNF24 zinc finger protein 24 2 2
MIRT493023 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT502199 HSPB8 heat shock protein family B (small) member 8 2 2
MIRT505367 TMEM154 transmembrane protein 154 2 4
MIRT505919 RCAN3 RCAN family member 3 2 4
MIRT509089 SYNPO2L synaptopodin 2 like 2 4
MIRT509103 BMP8B bone morphogenetic protein 8b 2 6
MIRT509571 HIST2H2AB histone cluster 2 H2A family member b 2 4
MIRT509782 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT511295 KIAA1551 KIAA1551 2 2
MIRT514289 FXYD5 FXYD domain containing ion transport regulator 5 2 6
MIRT514389 CLUAP1 clusterin associated protein 1 2 2
MIRT514404 RSL1D1 ribosomal L1 domain containing 1 2 2
MIRT514421 SLC38A7 solute carrier family 38 member 7 2 2
MIRT514546 PTGR2 prostaglandin reductase 2 2 2
MIRT514790 SLC25A45 solute carrier family 25 member 45 2 2
MIRT514836 LYRM7 LYR motif containing 7 2 2
MIRT514850 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 2
MIRT515112 LMOD3 leiomodin 3 2 2
MIRT515338 CXorf36 chromosome X open reading frame 36 2 2
MIRT515582 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT515612 ISY1 ISY1 splicing factor homolog 2 2
MIRT516018 A1CF APOBEC1 complementation factor 2 2
MIRT516721 MYPN myopalladin 2 2
MIRT516739 GSTK1 glutathione S-transferase kappa 1 2 2
MIRT516774 PTRF caveolae associated protein 1 2 4
MIRT517076 C3orf62 chromosome 3 open reading frame 62 2 2
MIRT517115 NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 2 2
MIRT517196 OTUD6A OTU deubiquitinase 6A 2 2
MIRT517321 ZNF347 zinc finger protein 347 2 2
MIRT517612 DEGS1 delta 4-desaturase, sphingolipid 1 2 2
MIRT517626 ZNF491 zinc finger protein 491 2 2
MIRT517656 TRIM72 tripartite motif containing 72 2 4
MIRT517742 DIS3L DIS3 like exosome 3'-5' exoribonuclease 2 4
MIRT518002 RPL4 ribosomal protein L4 2 4
MIRT518165 FGB fibrinogen beta chain 2 2
MIRT518180 SLC27A4 solute carrier family 27 member 4 2 2
MIRT518555 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT518572 ATP8B1 ATPase phospholipid transporting 8B1 2 2
MIRT519008 NOA1 nitric oxide associated 1 2 2
MIRT519340 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT519363 RBM28 RNA binding motif protein 28 2 2
MIRT519388 DNASE2 deoxyribonuclease 2, lysosomal 2 4
MIRT519404 KCNA7 potassium voltage-gated channel subfamily A member 7 2 4
MIRT519615 ZNF788 zinc finger family member 788 2 4
MIRT519817 ZKSCAN4 zinc finger with KRAB and SCAN domains 4 2 2
MIRT520455 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT520761 TCF23 transcription factor 23 2 2
MIRT520981 SOCS5 suppressor of cytokine signaling 5 2 2
MIRT521275 RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component 2 2
MIRT521397 RDH11 retinol dehydrogenase 11 (all-trans/9-cis/11-cis) 2 2
MIRT522023 PAQR3 progestin and adipoQ receptor family member 3 2 4
MIRT522105 NUDT3 nudix hydrolase 3 2 2
MIRT522145 NR2F6 nuclear receptor subfamily 2 group F member 6 2 4
MIRT522219 NPFFR1 neuropeptide FF receptor 1 2 2
MIRT522274 NKAP NFKB activating protein 2 2
MIRT522639 MANEAL mannosidase endo-alpha like 2 2
MIRT523167 HIST3H3 histone cluster 3 H3 2 2
MIRT523497 GMPS guanine monophosphate synthase 2 4
MIRT524033 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524396 COQ10B coenzyme Q10B 2 2
MIRT524682 C12orf49 chromosome 12 open reading frame 49 2 2
MIRT525542 PHB2 prohibitin 2 2 4
MIRT528430 COL9A2 collagen type IX alpha 2 chain 2 2
MIRT528738 RAB13 RAB13, member RAS oncogene family 2 2
MIRT530944 CMBL carboxymethylenebutenolidase homolog 2 2
MIRT531653 ZFP14 ZFP14 zinc finger protein 2 2
MIRT531851 MAP2K2 mitogen-activated protein kinase kinase 2 2 2
MIRT533473 TRIM71 tripartite motif containing 71 2 2
MIRT533658 TMF1 TATA element modulatory factor 1 2 2
MIRT540966 ZNF8 zinc finger protein 8 2 2
MIRT541988 MYO1C myosin IC 2 2
MIRT549545 CLPP caseinolytic mitochondrial matrix peptidase proteolytic subunit 2 2
MIRT551722 PCYT1A phosphate cytidylyltransferase 1, choline, alpha 2 2
MIRT553984 SRPR SRP receptor alpha subunit 2 2
MIRT555113 PUM2 pumilio RNA binding family member 2 2 2
MIRT563172 ZRANB3 zinc finger RANBP2-type containing 3 2 2
MIRT564006 UGT2B4 UDP glucuronosyltransferase family 2 member B4 2 2
MIRT564445 SLC35E2 solute carrier family 35 member E2 2 2
MIRT565959 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT607541 GLI2 GLI family zinc finger 2 2 2
MIRT607685 MAPK10 mitogen-activated protein kinase 10 2 2
MIRT609323 ZNF701 zinc finger protein 701 2 2
MIRT614038 THBS2 thrombospondin 2 2 2
MIRT616763 ANKRD33B ankyrin repeat domain 33B 2 2
MIRT619706 C6orf132 chromosome 6 open reading frame 132 2 2
MIRT619955 CLN8 CLN8, transmembrane ER and ERGIC protein 2 2
MIRT625229 C6orf89 chromosome 6 open reading frame 89 2 2
MIRT634238 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634964 C8orf17 chromosome 8 open reading frame 17 2 2
MIRT639615 FGF19 fibroblast growth factor 19 2 2
MIRT642692 ZNF878 zinc finger protein 878 2 2
MIRT643689 KIAA0586 KIAA0586 2 2
MIRT645271 SLC38A5 solute carrier family 38 member 5 2 2
MIRT647340 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT648167 TMEM192 transmembrane protein 192 2 2
MIRT655464 PAK3 p21 (RAC1) activated kinase 3 2 2
MIRT660232 BMP7 bone morphogenetic protein 7 2 2
MIRT666181 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT673638 CYCS cytochrome c, somatic 2 2
MIRT674044 ATXN3 ataxin 3 2 2
MIRT691167 APOL6 apolipoprotein L6 2 2
MIRT711724 NUPL2 nucleoporin like 2 2 2
MIRT712404 MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 2 2
MIRT715537 FTCD formimidoyltransferase cyclodeaminase 2 2
MIRT715939 NUP93 nucleoporin 93 2 2
MIRT722976 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3170 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-3170 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-miR-3170 Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-3170 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3170 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-3170 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3170 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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