miRTarBase - #MIRT250951


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pre-miRNA Information
pre-miRNA hsa-mir-548ac   
Genomic Coordinates chr1: 116560024 - 116560111
Description Homo sapiens miR-548ac stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548ac
Sequence 53| CAAAAACCGGCAAUUACUUUUG |74
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 1 - 116560056 29233923 MiREDiBase
A-to-I 5 1 - 116560055 29233923 MiREDiBase
A-to-I 6 1 - 116560054 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1182074110 6 dbSNP
rs1392446444 6 dbSNP
rs1326234665 7 dbSNP
rs556579863 8 dbSNP
rs993390910 9 dbSNP
rs901450363 13 dbSNP
rs538553306 22 dbSNP
Putative Targets

Gene Information
Gene Symbol CDK5R1   
Synonyms CDK5P35, CDK5R, NCK5A, p23, p25, p35, p35nck5a
Description cyclin dependent kinase 5 regulatory subunit 1
Transcript NM_003885   
Expression
Putative miRNA Targets on CDK5R1
3'UTR of CDK5R1
(miRNA target sites are highlighted)		 
>CDK5R1|NM_003885|3'UTR
   1 GCACTGTAGCCTGCGTCATGGCTCAAGGATTCAATGCATTTTTAAGAATTTATTATTAAATCAGTTTTGTGTACAGTATG
  81 TGTCTAGCAAAGCCACCAAGGGCCTCACCTTTCCCACAGTCTCTCCCTGGGGTTTTTTTCATCCCTGCCAAGAACTCTGG
 161 GCACTTTTGAACTCACGAGCCTTGCGCAAAACCCAGAAGATGTATTCAGAGCCACCCAGGCCACTGACCTCCCACTTTGG
 241 GGAACTCAAAGGACTGACCTGCCCCTGCCGCCTGTGCCCTTGCTGGGTCCAGGGTAGGCAAGGCTGCCGGCTGCACCCTG
 321 TATGGAGCTAGAGAGGGGCCTCTGGCTGCCTGGCCCAGGGAGGAATTGGGGTTTCTGGTTGGAGGCCCTTTTCTGGCTCC
 401 TGTGTGGAGTTATTCACTCTCCCAGAGGCTCCTGGAGCCAGCCACCCTAACTGAGCTGCCAGTGGGGTCGTGAGGCAAGA
 481 TCCCCGCCACCCGGGGACATCTTCAATCTAGGCGAGGCGAAGCTGAGCGGGTCTAGTGGAAAGATTGTGTCTGGTCGTTT
 561 GACCACACACCGCCCTGATTTGCTGTTTTCTTTTTTTAGGGAGAAGGGCTTTTCTTTAGTGGAGAAATGGAACTCGCCCC
 641 CCTACCCCCTTGTCTGCTGCTCCCAGCCACGTTGGTGGTATTGGCCGATGAGCTGGTTTGACTCATTAATTTCTCTCAAT
 721 TTGGGTCCCAGCTAAAGAGGTGGGGTGAAGCTGGGGACAGCTTTCCTGGGTGAGTTTTTCTTTTGAATAATGTAGTGCAG
 801 TCACCCTGTGGCAAATGCCAGGACAGCTGCAGGTGCCCATTAGCAACGCCTGCCTTCTGGGCAAGGTGAGGGATGCCATA
 881 CCTTGAGACCAAGCCGGTGCCCACCTAAGGGCTAAGGCCTCTTGCTGGTGCACATGACATTTGTCCTGCAGAGCTGGGGG
 961 GAAGGCGATGTGGTGACCCCACCCCCACCCGTTAATTTAAAGCTGTTTCTAAACAGTTGAGTTTCTTCTAAAGAGGAAGC
1041 CTTGCCCAGCAAGGACCAGTGAGACAGCCGGATCTTGGAGACAATTACAAGACGGGGAGTGAGACTCCTGATTGCTCTGG
1121 AAGCCTGCTGATTTCTACAACTGATCATTTGCAGCTGCTGGTTTTGGTTTCCACCTTACCCTACTGGCTGTAAAAACACA
1201 AATGTGTACTTTATTGATTTTCTTTCTAATTCTCCCGCATTGGTGGCTTGGGACTTGGGAGAGGGAGCAAGCCTTCCTCC
1281 ATGGCCCATCACTCGGCTGTGGAGAACAAAGACCAATGTGAAGACACTACAGAGGATTCTGTCTTCCAGGCCCAGTCCAC
1361 TGGGGAGTGCTGGAATGGGGACCTGGGGTGGGGAGGCAGAGGGTCACTTTACATAGGATTAAGTTCGAGGTGGCTACCGA
1441 TTTCAGCACATGCACTACTGAAATTTACACAAAAAGAAAGCTGTGAAATTGAAGTCCCAATTTAAGAGTCCTGAGGCAGA
1521 ACCTGGTGGCTGGAGGCATTCCCAGAGGTGGGGAAGAGAGCCTGCCCGGCCGGAGAACATCTGCCTTGCTGCACCTGAGG
1601 CCCAGCAGAGCCGTTCCTGGGACTGTCAGATAATCGGTGCAGCGGTGGAAGGAGCCTGCGGCTGCTGGCACAGACTTCAC
1681 ACAGCACCTCCTCTCTGCTGGGTTTCCACACAGCCTGTCTTCAGATCCTGCTGCCGCGTGCGACCAGAGGTGGGAGGCCC
1761 CTGGTGGCATGGAAGAGGGAGGGTCAGTGCCAAGTCTCAGGAGGAGGGCGCATGTGTGTATCACCCTCAGCTGGCGGAAC
1841 CTGGCTGCGAACTGTGCAGTTACGTTGCATCCACAGGATTCCAGTTGCGTGTCTGTTTCCTTCTCTTTCTCCGTATTTAT
1921 TTTTTTATTCTTCGGAGGAGGTGGACATTTCGGAAGTGGTGGGGACTAAGGGAAGAACTCTCTAGTTCCCTCAGTGTGAA
2001 GCCTGTCGTGTTCTCTCCCCTTGCACTGGTCATCAGTATTGTGTAAAGGAACAACTGATATACTTGAGTGTGCAAGCAAA
2081 GAACCCATTTGCCATGCTGCTATGAAGACTACTTTTAGATCAACAATAAAAAAAAACCTACAAAAAAACCTTTATTCTTT
2161 AATTGTTGCTTTTACGGTGATATTGTGCATGCAAACCAGGAGCATTTTGTGTCTTAAGAAAAATAATCTTAGAACAGATG
2241 GCTGTGAAAATTACACCCATGCACAGAACAAGCCACAGGAATAATAGTTCAGGATTTGGTTTTTCTCTTTTTCTTGTAAA
2321 CCTGGAGGGTTGATATATTCTTTCCATGCAGTTATTAGAACTTAGTTTTGTTCCAACAGTTAAACTTGCAATGAAAAGAA
2401 AATGTGCCATTTTTTTCACTCAGAATTATTCATAGCTGTATATTTGAAACTGCTAATTACACACGTGTGATGTATGTTGG
2481 TTTTTTAGTGCAATTTCTTCTGTAGCTATTCTTTGACCAAACTGTGGGTATTGTTAATATTAATTTATATTTGTCTCATT
2561 TTGTATGTATGTGTAGTGTGTTTGTGAGTATGTGTGGTTTATAATCTGACAAAGTCATGAAGCTCAGTTTGGCTGTAATT
2641 TAATTCCCCTTCCCTTATTTTTATTTATTTTTGTACTGTGCTGATTCAATAAAATGCACTGACCATCCAAAAAAAAAAAA
2721 AAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' guuuuCAUUA---ACGGCCAAAAAc 5'
               ||:||   ||::||||||| 
Target 5' cacgtGTGATGTATGTTGGTTTTTt 3'
 2462 - 2486 161.00 -12.80
2 
miRNA  3' guUUUCAUUAA---C--GGCCAAAAAc 5'
            | | ||:||   |  ::||||||| 
Target 5' gaATAATAGTTCAGGATTTGGTTTTTc 3'
 2279 - 2305 150.00 -7.30
3 
miRNA  3' guUUUCAUUAACGG---CCAAAAAc 5'
            | |||   | ||   ||||||| 
Target 5' ccACAGTCTCTCCCTGGGGTTTTTt 3'
 114 - 138 148.00 -5.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN28887840 15 COSMIC
COSN31598396 28 COSMIC
COSN31578117 47 COSMIC
COSN28674942 120 COSMIC
COSN5839231 127 COSMIC
COSN18740193 140 COSMIC
COSN30114099 153 COSMIC
COSN30177022 170 COSMIC
COSN30118695 213 COSMIC
COSN30544101 262 COSMIC
COSN31603391 268 COSMIC
COSN27107787 284 COSMIC
COSN30536240 293 COSMIC
COSN21179112 439 COSMIC
COSN6101954 558 COSMIC
COSN30723444 573 COSMIC
COSN23335431 583 COSMIC
COSN26504746 591 COSMIC
COSN29943906 602 COSMIC
COSN20083683 640 COSMIC
COSN30567953 643 COSMIC
COSN30176248 738 COSMIC
COSN30551013 802 COSMIC
COSN31579357 959 COSMIC
COSN32057370 1075 COSMIC
COSN31592631 1094 COSMIC
COSN6101955 1128 COSMIC
COSN31607479 1194 COSMIC
COSN30530922 1240 COSMIC
COSN27706655 1255 COSMIC
COSN30113512 1427 COSMIC
COSN30114496 1440 COSMIC
COSN23049683 1513 COSMIC
COSN31540136 1574 COSMIC
COSN30125608 1661 COSMIC
COSN30126619 1661 COSMIC
COSN31536158 1715 COSMIC
COSN17366682 1738 COSMIC
COSN31537392 1811 COSMIC
COSN31546473 1850 COSMIC
COSN28647100 1889 COSMIC
COSN2475593 1935 COSMIC
COSN17388817 2009 COSMIC
COSN31533702 2028 COSMIC
COSN24305861 2086 COSMIC
COSN26554323 2092 COSMIC
COSN26585030 2100 COSMIC
COSN30120945 2132 COSMIC
COSN30124014 2133 COSMIC
COSN31550992 2137 COSMIC
COSN30535045 2275 COSMIC
COSN30123800 2399 COSMIC
COSN30527296 2417 COSMIC
COSN31521137 2443 COSMIC
COSN30123718 2465 COSMIC
COSN30536971 2481 COSMIC
COSN31522492 2569 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1424899290 4 dbSNP
rs1416499570 5 dbSNP
rs1218983882 8 dbSNP
rs748740472 10 dbSNP
rs775291729 11 dbSNP
rs773299596 12 dbSNP
rs760688062 15 dbSNP
rs771123021 16 dbSNP
rs376942496 22 dbSNP
rs763934441 23 dbSNP
rs751475688 25 dbSNP
rs1321902846 28 dbSNP
rs761770426 29 dbSNP
rs767377634 30 dbSNP
rs1304956986 33 dbSNP
rs749892921 43 dbSNP
rs1217882269 44 dbSNP
rs1270670974 48 dbSNP
rs200604488 49 dbSNP
rs779851427 51 dbSNP
rs1288722669 52 dbSNP
rs753606255 53 dbSNP
rs1363786432 62 dbSNP
rs1297942005 68 dbSNP
rs567337992 81 dbSNP
rs556578018 84 dbSNP
rs746988793 87 dbSNP
rs1169812721 89 dbSNP
rs537981398 100 dbSNP
rs1293307046 110 dbSNP
rs1458676936 116 dbSNP
rs770821831 117 dbSNP
rs971046359 118 dbSNP
rs8192474 120 dbSNP
rs9333303 126 dbSNP
rs1390845344 129 dbSNP
rs1426715866 130 dbSNP
rs1431657983 131 dbSNP
rs1266860714 132 dbSNP
rs1209037735 133 dbSNP
rs1488657823 135 dbSNP
rs919537365 138 dbSNP
rs546768731 140 dbSNP
rs1026195337 142 dbSNP
rs950629328 145 dbSNP
rs746647898 150 dbSNP
rs985041771 156 dbSNP
rs566809971 157 dbSNP
rs1387737377 158 dbSNP
rs1370138080 160 dbSNP
rs1016090055 162 dbSNP
rs1429661932 175 dbSNP
rs1371321398 177 dbSNP
rs943509295 181 dbSNP
rs541410446 186 dbSNP
rs1272480117 187 dbSNP
rs748735204 195 dbSNP
rs558842672 201 dbSNP
rs933353194 219 dbSNP
rs974516405 225 dbSNP
rs1270757833 228 dbSNP
rs1042750767 230 dbSNP
rs923047037 234 dbSNP
rs756857205 244 dbSNP
rs1222702562 248 dbSNP
rs1290806988 255 dbSNP
rs1342208207 259 dbSNP
rs977746898 261 dbSNP
rs186160118 262 dbSNP
rs1054300164 263 dbSNP
rs1409524805 264 dbSNP
rs1351662738 265 dbSNP
rs1449699366 268 dbSNP
rs1394399298 270 dbSNP
rs138704443 271 dbSNP
rs779495379 273 dbSNP
rs1467767656 275 dbSNP
rs1022673514 291 dbSNP
rs1156696132 298 dbSNP
rs948256819 300 dbSNP
rs1252490281 314 dbSNP
rs1183861018 315 dbSNP
rs746389078 318 dbSNP
rs971531781 319 dbSNP
rs554794412 321 dbSNP
rs1254856302 325 dbSNP
rs1046443702 340 dbSNP
rs1462380996 346 dbSNP
rs1446698222 349 dbSNP
rs906615827 352 dbSNP
rs1384817910 356 dbSNP
rs1330197163 360 dbSNP
rs1281823600 367 dbSNP
rs1002556737 369 dbSNP
rs191835402 379 dbSNP
rs1026429201 385 dbSNP
rs994156454 386 dbSNP
rs1047105615 394 dbSNP
rs888475520 403 dbSNP
rs540510833 405 dbSNP
rs985479298 411 dbSNP
rs1386757283 412 dbSNP
rs1346308583 414 dbSNP
rs1430566466 415 dbSNP
rs1456543442 416 dbSNP
rs1412405834 428 dbSNP
rs909428668 432 dbSNP
rs1160289762 435 dbSNP
rs964876308 443 dbSNP
rs1187656507 452 dbSNP
rs1384310134 452 dbSNP
rs1246036183 455 dbSNP
rs1016228111 461 dbSNP
rs974882610 463 dbSNP
rs1207681839 471 dbSNP
rs1313991579 473 dbSNP
rs996418894 484 dbSNP
rs571856103 485 dbSNP
rs1356273416 486 dbSNP
rs1353811394 490 dbSNP
rs1225322829 493 dbSNP
rs1248301497 493 dbSNP
rs933427966 499 dbSNP
rs373389045 500 dbSNP
rs977840309 505 dbSNP
rs1436068003 506 dbSNP
rs535538349 507 dbSNP
rs1320050729 509 dbSNP
rs546112753 515 dbSNP
rs923979198 519 dbSNP
rs989685926 520 dbSNP
rs1445974677 523 dbSNP
rs1387763220 526 dbSNP
rs772514183 527 dbSNP
rs776025210 529 dbSNP
rs1243428053 531 dbSNP
rs747438574 535 dbSNP
rs562808932 541 dbSNP
rs1237187136 543 dbSNP
rs1291272483 546 dbSNP
rs530456608 547 dbSNP
rs768733372 548 dbSNP
rs1224112002 557 dbSNP
rs1260345803 558 dbSNP
rs755376196 559 dbSNP
rs1274010016 564 dbSNP
rs1193144610 565 dbSNP
rs982704081 572 dbSNP
rs1476626197 573 dbSNP
rs1161765090 575 dbSNP
rs1384846545 576 dbSNP
rs1425489325 579 dbSNP
rs1165569790 585 dbSNP
rs1455378864 586 dbSNP
rs1358753800 588 dbSNP
rs1399476537 589 dbSNP
rs746754197 590 dbSNP
rs928040949 590 dbSNP
rs1047200997 591 dbSNP
rs1167427655 601 dbSNP
rs1328074263 604 dbSNP
rs893017349 608 dbSNP
rs1012722557 610 dbSNP
rs768592857 615 dbSNP
rs1359741464 616 dbSNP
rs1189069356 617 dbSNP
rs1247782030 620 dbSNP
rs1037587323 621 dbSNP
rs779464492 631 dbSNP
rs1270030472 633 dbSNP
rs544171092 636 dbSNP
rs561461921 637 dbSNP
rs1044180217 638 dbSNP
rs1449171650 642 dbSNP
rs1339273172 645 dbSNP
rs1332307439 649 dbSNP
rs1185906372 652 dbSNP
rs1276827585 655 dbSNP
rs1218848918 658 dbSNP
rs995996060 660 dbSNP
rs1242865479 667 dbSNP
rs1283687118 671 dbSNP
rs1445594283 672 dbSNP
rs780893977 673 dbSNP
rs1378686328 674 dbSNP
rs1453163313 676 dbSNP
rs1159152541 681 dbSNP
rs571782226 684 dbSNP
rs778154210 687 dbSNP
rs560864203 688 dbSNP
rs1030744543 689 dbSNP
rs529784212 691 dbSNP
rs1454370771 693 dbSNP
rs1345849061 700 dbSNP
rs538924341 701 dbSNP
rs560392464 703 dbSNP
rs1005850704 704 dbSNP
rs1016542602 705 dbSNP
rs1239138569 707 dbSNP
rs776818247 708 dbSNP
rs1353497364 709 dbSNP
rs1199292607 710 dbSNP
rs1263028242 713 dbSNP
rs184096796 714 dbSNP
rs1185752122 715 dbSNP
rs1236586886 716 dbSNP
rs1418683007 725 dbSNP
rs1235794809 729 dbSNP
rs974976081 730 dbSNP
rs1209765534 731 dbSNP
rs1443225252 732 dbSNP
rs923455646 733 dbSNP
rs768408428 734 dbSNP
rs1326773485 740 dbSNP
rs774148041 740 dbSNP
rs1287702089 741 dbSNP
rs552514471 742 dbSNP
rs1477065299 747 dbSNP
rs1175706474 752 dbSNP
rs1406712729 753 dbSNP
rs1470839756 754 dbSNP
rs1328960050 755 dbSNP
rs1374966090 757 dbSNP
rs1395360118 758 dbSNP
rs1300570893 769 dbSNP
rs1446575741 770 dbSNP
rs924016632 774 dbSNP
rs762383006 778 dbSNP
rs1308664822 784 dbSNP
rs1180459209 792 dbSNP
rs569151995 797 dbSNP
rs936672480 799 dbSNP
rs1411667083 801 dbSNP
rs989418313 803 dbSNP
rs1160550937 807 dbSNP
rs982856145 818 dbSNP
rs914504029 820 dbSNP
rs1181374134 845 dbSNP
rs1445268892 848 dbSNP
rs9333304 849 dbSNP
rs941301715 851 dbSNP
rs554464402 853 dbSNP
rs899861030 858 dbSNP
rs988884907 865 dbSNP
rs1216157662 868 dbSNP
rs931873993 877 dbSNP
rs1051724446 878 dbSNP
rs890280444 879 dbSNP
rs1382849650 883 dbSNP
rs1316778718 891 dbSNP
rs907064403 896 dbSNP
rs938494036 897 dbSNP
rs1348676834 900 dbSNP
rs1047937665 901 dbSNP
rs1030670924 904 dbSNP
rs1186982789 906 dbSNP
rs893576867 908 dbSNP
rs568323776 910 dbSNP
rs1010497669 912 dbSNP
rs1399375069 917 dbSNP
rs1411334965 918 dbSNP
rs1329177295 920 dbSNP
rs186551397 928 dbSNP
rs553824605 930 dbSNP
rs1407836438 935 dbSNP
rs577041865 939 dbSNP
rs539631470 944 dbSNP
rs1486702385 946 dbSNP
rs1284886959 952 dbSNP
rs556466463 955 dbSNP
rs142764418 967 dbSNP
rs1359610277 968 dbSNP
rs1015964112 969 dbSNP
rs982767177 974 dbSNP
rs9333305 976 dbSNP
rs1197604028 977 dbSNP
rs560945275 980 dbSNP
rs1274055500 982 dbSNP
rs1295793377 982 dbSNP
rs1365897009 983 dbSNP
rs1293516838 984 dbSNP
rs1482851747 988 dbSNP
rs951492951 991 dbSNP
rs1271425587 992 dbSNP
rs1481063214 993 dbSNP
rs1166808901 994 dbSNP
rs1429133065 996 dbSNP
rs761735963 1012 dbSNP
rs1373889851 1015 dbSNP
rs1198731038 1017 dbSNP
rs1430136789 1037 dbSNP
rs982949495 1040 dbSNP
rs996471874 1041 dbSNP
rs1376398864 1042 dbSNP
rs1490495232 1045 dbSNP
rs1030577381 1048 dbSNP
rs1338142289 1050 dbSNP
rs9333306 1054 dbSNP
rs962775306 1054 dbSNP
rs796661418 1056 dbSNP
rs1369563901 1057 dbSNP
rs1229136289 1060 dbSNP
rs1310880688 1068 dbSNP
rs1283046768 1070 dbSNP
rs975548610 1071 dbSNP
rs1347960787 1082 dbSNP
rs1306674429 1088 dbSNP
rs540872539 1089 dbSNP
rs934042244 1094 dbSNP
rs1365916709 1095 dbSNP
rs1404073850 1096 dbSNP
rs1480614555 1098 dbSNP
rs1431403159 1100 dbSNP
rs1179894482 1103 dbSNP
rs1052084361 1120 dbSNP
rs911815471 1121 dbSNP
rs1196960521 1125 dbSNP
rs1482078842 1126 dbSNP
rs1262068892 1128 dbSNP
rs935143523 1130 dbSNP
rs1052234114 1133 dbSNP
rs978247112 1141 dbSNP
rs540351179 1147 dbSNP
rs1328117129 1154 dbSNP
rs1336503210 1161 dbSNP
rs958087848 1164 dbSNP
rs775867937 1174 dbSNP
rs1309248419 1180 dbSNP
rs1394310215 1184 dbSNP
rs989509877 1187 dbSNP
rs1405659747 1188 dbSNP
rs143859852 1190 dbSNP
rs916604402 1198 dbSNP
rs560253938 1207 dbSNP
rs1341744348 1209 dbSNP
rs1408009127 1213 dbSNP
rs190499902 1233 dbSNP
rs118075579 1237 dbSNP
rs373411633 1238 dbSNP
rs1183384785 1245 dbSNP
rs1047526646 1246 dbSNP
rs773748755 1249 dbSNP
rs886256928 1255 dbSNP
rs1462982397 1258 dbSNP
rs941781373 1260 dbSNP
rs562813172 1264 dbSNP
rs1204854901 1266 dbSNP
rs1352054492 1271 dbSNP
rs376644429 1273 dbSNP
rs150766683 1279 dbSNP
rs904847118 1280 dbSNP
rs1316060075 1282 dbSNP
rs1265960167 1286 dbSNP
rs1003217499 1293 dbSNP
rs1363208768 1295 dbSNP
rs1037450409 1296 dbSNP
rs1193294197 1309 dbSNP
rs1315975190 1316 dbSNP
rs759504744 1331 dbSNP
rs1035642004 1332 dbSNP
rs1455977560 1340 dbSNP
rs1388960648 1342 dbSNP
rs35218953 1346 dbSNP
rs951626544 1347 dbSNP
rs914120723 1348 dbSNP
rs1004355057 1350 dbSNP
rs1017097441 1356 dbSNP
rs995810519 1360 dbSNP
rs1031004695 1366 dbSNP
rs1287010217 1368 dbSNP
rs1208559676 1384 dbSNP
rs1385445597 1389 dbSNP
rs890691368 1392 dbSNP
rs183036703 1396 dbSNP
rs1457266936 1397 dbSNP
rs1292592878 1402 dbSNP
rs1248189111 1406 dbSNP
rs1291571033 1408 dbSNP
rs921367718 1411 dbSNP
rs1340329824 1417 dbSNP
rs1000115964 1423 dbSNP
rs548141431 1427 dbSNP
rs1382659020 1428 dbSNP
rs1429817999 1430 dbSNP
rs955519659 1432 dbSNP
rs1321326629 1439 dbSNP
rs1403025603 1440 dbSNP
rs1163686126 1451 dbSNP
rs1364497607 1453 dbSNP
rs1416993562 1456 dbSNP
rs1166931524 1473 dbSNP
rs766814393 1473 dbSNP
rs958181299 1479 dbSNP
rs1244186773 1481 dbSNP
rs1197117528 1486 dbSNP
rs769582003 1489 dbSNP
rs878927766 1491 dbSNP
rs1270164671 1511 dbSNP
rs986838681 1512 dbSNP
rs1340099331 1522 dbSNP
rs1272627796 1523 dbSNP
rs138054348 1526 dbSNP
rs371187446 1529 dbSNP
rs1339911746 1532 dbSNP
rs1271720795 1538 dbSNP
rs1221405267 1539 dbSNP
rs935234405 1544 dbSNP
rs1303649702 1547 dbSNP
rs1023640834 1565 dbSNP
rs1352242912 1568 dbSNP
rs969363424 1569 dbSNP
rs1421124164 1570 dbSNP
rs1244522621 1572 dbSNP
rs1480290258 1572 dbSNP
rs982111188 1573 dbSNP
rs1263987608 1575 dbSNP
rs767484304 1578 dbSNP
rs1045178949 1580 dbSNP
rs1003597210 1582 dbSNP
rs1056154220 1587 dbSNP
rs1353497540 1590 dbSNP
rs886798052 1603 dbSNP
rs1201571147 1613 dbSNP
rs1206191655 1614 dbSNP
rs1247911378 1618 dbSNP
rs533908625 1626 dbSNP
rs1463197238 1630 dbSNP
rs1184888112 1631 dbSNP
rs547521140 1636 dbSNP
rs1004466305 1644 dbSNP
rs928554040 1645 dbSNP
rs962838086 1652 dbSNP
rs1469654589 1653 dbSNP
rs1407283848 1654 dbSNP
rs773173904 1660 dbSNP
rs960011718 1661 dbSNP
rs1162453366 1669 dbSNP
rs1028804031 1670 dbSNP
rs1471179146 1672 dbSNP
rs570588520 1674 dbSNP
rs1454275643 1679 dbSNP
rs987321406 1682 dbSNP
rs907747231 1691 dbSNP
rs1263530739 1692 dbSNP
rs941837090 1698 dbSNP
rs1037466445 1699 dbSNP
rs1031612868 1709 dbSNP
rs1374847107 1720 dbSNP
rs956076881 1722 dbSNP
rs988009725 1728 dbSNP
rs921642830 1735 dbSNP
rs931655569 1736 dbSNP
rs946502477 1737 dbSNP
rs149535076 1738 dbSNP
rs1380180331 1739 dbSNP
rs556326266 1742 dbSNP
rs1383451114 1743 dbSNP
rs1182987285 1746 dbSNP
rs144091317 1747 dbSNP
rs1053113840 1755 dbSNP
rs1183409765 1757 dbSNP
rs893984063 1761 dbSNP
rs1241494554 1770 dbSNP
rs1216393647 1771 dbSNP
rs1355313741 1775 dbSNP
rs886766747 1778 dbSNP
rs1244530339 1785 dbSNP
rs1010990113 1794 dbSNP
rs536148917 1795 dbSNP
rs1023693043 1802 dbSNP
rs1380928197 1803 dbSNP
rs1361676452 1805 dbSNP
rs1290034544 1806 dbSNP
rs1433504792 1810 dbSNP
rs969415848 1811 dbSNP
rs1163028845 1813 dbSNP
rs1425332682 1816 dbSNP
rs1387357625 1819 dbSNP
rs1004022459 1825 dbSNP
rs763651026 1832 dbSNP
rs1268111317 1836 dbSNP
rs767972975 1837 dbSNP
rs951454005 1838 dbSNP
rs1186823243 1845 dbSNP
rs1489238885 1847 dbSNP
rs983420390 1849 dbSNP
rs907762004 1850 dbSNP
rs997397311 1851 dbSNP
rs963212647 1854 dbSNP
rs973211714 1855 dbSNP
rs1482739224 1862 dbSNP
rs555756027 1864 dbSNP
rs574388838 1865 dbSNP
rs1419506919 1867 dbSNP
rs540217744 1873 dbSNP
rs1409666472 1874 dbSNP
rs931780163 1875 dbSNP
rs1051934465 1876 dbSNP
rs1359772323 1882 dbSNP
rs735555 1889 dbSNP
rs934983642 1893 dbSNP
rs761037919 1894 dbSNP
rs1170910157 1896 dbSNP
rs754620764 1902 dbSNP
rs752217536 1908 dbSNP
rs981125535 1913 dbSNP
rs1427167413 1914 dbSNP
rs1410896080 1916 dbSNP
rs1480513452 1918 dbSNP
rs1268840700 1920 dbSNP
rs926475711 1920 dbSNP
rs1288048074 1931 dbSNP
rs1251484091 1934 dbSNP
rs1052639259 1935 dbSNP
rs1321824168 1942 dbSNP
rs1283271711 1946 dbSNP
rs894038667 1948 dbSNP
rs577005173 1952 dbSNP
rs1045235929 1953 dbSNP
rs1299998474 1954 dbSNP
rs939645726 1957 dbSNP
rs905350116 1960 dbSNP
rs1311145697 1965 dbSNP
rs1003668304 1973 dbSNP
rs1207388878 1990 dbSNP
rs1379206093 1995 dbSNP
rs1038057055 1996 dbSNP
rs1252764257 2001 dbSNP
rs1250559577 2003 dbSNP
rs766658642 2008 dbSNP
rs1035505354 2009 dbSNP
rs887126166 2021 dbSNP
rs1004584571 2025 dbSNP
rs547956364 2030 dbSNP
rs1347549960 2035 dbSNP
rs1259377043 2039 dbSNP
rs753532483 2040 dbSNP
rs1008357260 2050 dbSNP
rs1481394942 2053 dbSNP
rs1450544308 2055 dbSNP
rs1200110558 2060 dbSNP
rs1031676656 2061 dbSNP
rs963263134 2062 dbSNP
rs1404040027 2067 dbSNP
rs1156620264 2068 dbSNP
rs1432729468 2072 dbSNP
rs775922856 2075 dbSNP
rs545874565 2076 dbSNP
rs973303982 2080 dbSNP
rs1160157340 2081 dbSNP
rs1442227154 2083 dbSNP
rs1430583777 2084 dbSNP
rs1184717866 2087 dbSNP
rs562706587 2090 dbSNP
rs1369058275 2093 dbSNP
rs1260024951 2095 dbSNP
rs953331654 2095 dbSNP
rs1204928102 2103 dbSNP
rs987273231 2104 dbSNP
rs1351587305 2108 dbSNP
rs1011503136 2125 dbSNP
rs1244124281 2126 dbSNP
rs1448609580 2128 dbSNP
rs150720205 2128 dbSNP
rs970486347 2128 dbSNP
rs1342212012 2129 dbSNP
rs911592148 2137 dbSNP
rs1367502576 2138 dbSNP
rs1217038905 2142 dbSNP
rs1360994579 2146 dbSNP
rs1297022306 2148 dbSNP
rs935030598 2149 dbSNP
rs1002119894 2152 dbSNP
rs531379295 2155 dbSNP
rs1163689273 2161 dbSNP
rs1342458260 2169 dbSNP
rs115744590 2176 dbSNP
rs561820166 2177 dbSNP
rs960490975 2208 dbSNP
rs866265371 2210 dbSNP
rs139975759 2216 dbSNP
rs1490792203 2224 dbSNP
rs1222930442 2225 dbSNP
rs563558753 2231 dbSNP
rs547381336 2236 dbSNP
rs1046669139 2256 dbSNP
rs1490255015 2261 dbSNP
rs946992400 2262 dbSNP
rs1189563171 2265 dbSNP
rs1268332758 2267 dbSNP
rs928118741 2270 dbSNP
rs1045285627 2273 dbSNP
rs908264698 2274 dbSNP
rs1299840005 2278 dbSNP
rs1402660648 2285 dbSNP
rs1364585566 2299 dbSNP
rs1393761848 2306 dbSNP
rs1450362603 2306 dbSNP
rs961104580 2311 dbSNP
rs1478455313 2316 dbSNP
rs1426172190 2317 dbSNP
rs9333307 2323 dbSNP
rs1480195952 2324 dbSNP
rs9333308 2336 dbSNP
rs1224133045 2337 dbSNP
rs939479585 2337 dbSNP
rs1427011090 2338 dbSNP
rs1056556424 2339 dbSNP
rs932341212 2341 dbSNP
rs1165925943 2345 dbSNP
rs9333309 2348 dbSNP
rs9333310 2350 dbSNP
rs1016977760 2365 dbSNP
rs1290147926 2366 dbSNP
rs898482179 2370 dbSNP
rs1053229310 2371 dbSNP
rs9333311 2373 dbSNP
rs1295017221 2377 dbSNP
rs891992663 2384 dbSNP
rs1011598106 2387 dbSNP
rs1333441191 2390 dbSNP
rs1327633198 2397 dbSNP
rs1043568912 2399 dbSNP
rs1403095172 2405 dbSNP
rs1469601556 2408 dbSNP
rs1028906747 2410 dbSNP
rs1361140937 2410 dbSNP
rs905830287 2410 dbSNP
rs1001945565 2420 dbSNP
rs1228675083 2422 dbSNP
rs1232325329 2422 dbSNP
rs1458105194 2426 dbSNP
rs1259906388 2434 dbSNP
rs1201754542 2435 dbSNP
rs1288806793 2450 dbSNP
rs1279110853 2451 dbSNP
rs1319882764 2457 dbSNP
rs1033578966 2461 dbSNP
rs1370749805 2465 dbSNP
rs953246723 2466 dbSNP
rs1248536170 2473 dbSNP
rs1278377098 2483 dbSNP
rs987686799 2485 dbSNP
rs1018709207 2489 dbSNP
rs1378550600 2491 dbSNP
rs1335293195 2492 dbSNP
rs956690169 2494 dbSNP
rs1360070906 2506 dbSNP
rs1178717155 2507 dbSNP
rs1399116652 2511 dbSNP
rs531750305 2515 dbSNP
rs1159546606 2517 dbSNP
rs1246496195 2518 dbSNP
rs1013539289 2519 dbSNP
rs1181642122 2523 dbSNP
rs1446603425 2527 dbSNP
rs778586793 2529 dbSNP
rs796424326 2532 dbSNP
rs1413470620 2534 dbSNP
rs548464431 2540 dbSNP
rs980995666 2548 dbSNP
rs535639019 2554 dbSNP
rs758940174 2555 dbSNP
rs15560 2560 dbSNP
rs1355187863 2572 dbSNP
rs556058783 2573 dbSNP
rs926830189 2574 dbSNP
rs1245821191 2577 dbSNP
rs777619669 2579 dbSNP
rs566219181 2585 dbSNP
rs1380546827 2587 dbSNP
rs1304888047 2593 dbSNP
rs757074975 2611 dbSNP
rs533812185 2617 dbSNP
rs1317873249 2618 dbSNP
rs780753296 2623 dbSNP
rs1448241223 2640 dbSNP
rs548572511 2650 dbSNP
rs887272044 2653 dbSNP
rs1376755546 2656 dbSNP
rs1414445657 2657 dbSNP
rs1183590627 2662 dbSNP
rs944280676 2663 dbSNP
rs940111215 2664 dbSNP
rs1053322880 2680 dbSNP
rs1225237278 2682 dbSNP
rs1216836154 2688 dbSNP
rs1489080327 2690 dbSNP
rs553813619 2697 dbSNP
rs1038461649 2700 dbSNP
rs1243439096 2705 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 8851.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000313401.3 | 3UTR | UUUUUUAGUGCAAUUUCUUCUGUAGCUAUUCUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000313401.3 | 3UTR | UUUUUUAGUGCAAUUUCUUCUGUAGCUAUUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000313401.3 | 3UTR | UUUUUUAGUGCAAUUUCUUCUGUAGCUAUUCUUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000313401.3 | 3UTR | UUUAGUGCAAUUUCUUCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
275 hsa-miR-548ac Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055863 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT074959 LEPROT leptin receptor overlapping transcript 2 2
MIRT076823 SUZ12 SUZ12 polycomb repressive complex 2 subunit 2 4
MIRT078708 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT099610 ID4 inhibitor of DNA binding 4, HLH protein 2 4
MIRT103362 CBX3 chromobox 3 2 2
MIRT111801 MPZL1 myelin protein zero like 1 2 2
MIRT114050 AKAP11 A-kinase anchoring protein 11 2 12
MIRT133719 SKI SKI proto-oncogene 2 2
MIRT136817 NHLRC3 NHL repeat containing 3 2 6
MIRT149926 LDLR low density lipoprotein receptor 2 2
MIRT166915 TNPO1 transportin 1 2 2
MIRT168142 SOX4 SRY-box 4 2 10
MIRT190787 STRN3 striatin 3 2 4
MIRT207471 RMND5A required for meiotic nuclear division 5 homolog A 2 2
MIRT250951 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT271993 ARF1 ADP ribosylation factor 1 2 4
MIRT282618 IGF1R insulin like growth factor 1 receptor 2 8
MIRT294153 ZNF845 zinc finger protein 845 2 2
MIRT309060 C4ORF3 chromosome 4 open reading frame 3 2 2
MIRT318548 SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein 2 2
MIRT319752 LUC7L2 LUC7 like 2, pre-mRNA splicing factor 2 2
MIRT331324 TM9SF3 transmembrane 9 superfamily member 3 2 2
MIRT337204 TOMM20 translocase of outer mitochondrial membrane 20 2 6
MIRT346145 ALYREF Aly/REF export factor 2 2
MIRT347727 LSM14A LSM14A, mRNA processing body assembly factor 2 2
MIRT350503 MRGBP MRG domain binding protein 2 6
MIRT356409 RBPJ recombination signal binding protein for immunoglobulin kappa J region 2 2
MIRT357986 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT374399 M6PR mannose-6-phosphate receptor, cation dependent 2 6
MIRT442727 TMEM158 transmembrane protein 158 (gene/pseudogene) 2 2
MIRT443411 HMX3 H6 family homeobox 3 2 2
MIRT444408 FRMD5 FERM domain containing 5 2 2
MIRT444469 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT444650 HSBP1 heat shock factor binding protein 1 2 2
MIRT444861 EXD2 exonuclease 3'-5' domain containing 2 2 2
MIRT445685 TNFSF15 TNF superfamily member 15 2 2
MIRT446001 CD1D CD1d molecule 2 2
MIRT446074 RABIF RAB interacting factor 2 2
MIRT446308 ACSL3 acyl-CoA synthetase long chain family member 3 2 2
MIRT446432 ABHD2 abhydrolase domain containing 2 2 2
MIRT447269 C3orf30 chromosome 3 open reading frame 30 2 2
MIRT447759 TMCC3 transmembrane and coiled-coil domain family 3 2 2
MIRT448161 P2RY10 purinergic receptor P2Y10 2 2
MIRT449049 ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif 5 2 2
MIRT449275 PALM2 paralemmin 2 2 2
MIRT450122 IMP3 IMP3, U3 small nucleolar ribonucleoprotein 2 2
MIRT450155 GABRB3 gamma-aminobutyric acid type A receptor beta3 subunit 2 2
MIRT451289 ZNF101 zinc finger protein 101 2 2
MIRT459253 ADRBK1 G protein-coupled receptor kinase 2 2 2
MIRT462554 NUDT19 nudix hydrolase 19 2 2
MIRT464470 UGCG UDP-glucose ceramide glucosyltransferase 2 2
MIRT465120 TSC22D2 TSC22 domain family member 2 2 4
MIRT467996 SKIL SKI like proto-oncogene 2 2
MIRT468718 SDC4 syndecan 4 2 2
MIRT469269 RHOB ras homolog family member B 2 2
MIRT470675 POLR2D RNA polymerase II subunit D 2 4
MIRT470723 POGK pogo transposable element derived with KRAB domain 2 2
MIRT471438 PDIA6 protein disulfide isomerase family A member 6 2 2
MIRT471502 PDE4D phosphodiesterase 4D 2 4
MIRT471988 NR2F2 nuclear receptor subfamily 2 group F member 2 2 4
MIRT472386 NEK7 NIMA related kinase 7 2 2
MIRT475028 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT479411 CDKN1B cyclin dependent kinase inhibitor 1B 2 10
MIRT480514 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT481700 AR androgen receptor 2 2
MIRT482543 ACTB actin beta 2 4
MIRT482627 ABCE1 ATP binding cassette subfamily E member 1 2 2
MIRT484725 INHBA inhibin beta A subunit 2 12
MIRT487778 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT491883 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT494653 ARNTL aryl hydrocarbon receptor nuclear translocator like 2 2
MIRT497366 SF1 splicing factor 1 2 2
MIRT499156 HSPA1B heat shock protein family A (Hsp70) member 1B 2 8
MIRT502830 CELSR3 cadherin EGF LAG seven-pass G-type receptor 3 2 6
MIRT502944 CDC37L1 cell division cycle 37 like 1 2 8
MIRT503942 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT504235 MYO6 myosin VI 2 2
MIRT504453 MC2R melanocortin 2 receptor 2 2
MIRT506022 PURA purine rich element binding protein A 2 2
MIRT508028 BCAT1 branched chain amino acid transaminase 1 2 4
MIRT508299 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 4
MIRT511515 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT512307 AMER1 APC membrane recruitment protein 1 2 6
MIRT514565 XRCC3 X-ray repair cross complementing 3 2 4
MIRT515657 MYBPC1 myosin binding protein C, slow type 2 2
MIRT518429 SSU72 SSU72 homolog, RNA polymerase II CTD phosphatase 2 2
MIRT520378 UBE2D1 ubiquitin conjugating enzyme E2 D1 2 4
MIRT521604 PSMA2 proteasome subunit alpha 2 2 4
MIRT521725 PPP3R1 protein phosphatase 3 regulatory subunit B, alpha 2 4
MIRT522579 MBNL3 muscleblind like splicing regulator 3 2 4
MIRT522731 LRRC55 leucine rich repeat containing 55 2 8
MIRT524547 CDC5L cell division cycle 5 like 2 4
MIRT525371 SYNM synemin 2 2
MIRT526489 PPIA peptidylprolyl isomerase A 2 4
MIRT527197 CLASP1 cytoplasmic linker associated protein 1 2 2
MIRT527285 FBLN2 fibulin 2 2 2
MIRT527383 MGARP mitochondria localized glutamic acid rich protein 2 2
MIRT527409 SMU1 DNA replication regulator and spliceosomal factor 2 6
MIRT527454 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT528348 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529104 ZNF100 zinc finger protein 100 2 2
MIRT529317 ATRNL1 attractin like 1 2 2
MIRT529328 PDE5A phosphodiesterase 5A 2 2
MIRT529750 SEL1L SEL1L ERAD E3 ligase adaptor subunit 2 2
MIRT530277 MKRN3 makorin ring finger protein 3 2 2
MIRT531415 TMEM18 transmembrane protein 18 2 2
MIRT532544 WDR13 WD repeat domain 13 2 2
MIRT533245 VKORC1L1 vitamin K epoxide reductase complex subunit 1 like 1 2 2
MIRT534659 RNF20 ring finger protein 20 2 2
MIRT534818 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT537492 FAM169A family with sequence similarity 169 member A 2 2
MIRT538778 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT539122 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT540964 SLC25A43 solute carrier family 25 member 43 2 2
MIRT541403 CDC27 cell division cycle 27 2 2
MIRT543353 ZNF829 zinc finger protein 829 2 2
MIRT543623 MFAP3 microfibril associated protein 3 2 2
MIRT543649 YY2 YY2 transcription factor 2 2
MIRT544945 SNCB synuclein beta 2 2
MIRT545327 SPC25 SPC25, NDC80 kinetochore complex component 2 2
MIRT546094 VEZF1 vascular endothelial zinc finger 1 2 2
MIRT548605 DCUN1D3 defective in cullin neddylation 1 domain containing 3 2 2
MIRT548638 DAZAP1 DAZ associated protein 1 2 4
MIRT550318 ZNF681 zinc finger protein 681 2 2
MIRT550412 SLC29A1 solute carrier family 29 member 1 (Augustine blood group) 2 4
MIRT551034 SPPL3 signal peptide peptidase like 3 2 2
MIRT551602 HDGFRP2 HDGF like 2 2 2
MIRT552064 ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 2 4
MIRT552803 YAF2 YY1 associated factor 2 2 2
MIRT553274 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT553303 TSPAN3 tetraspanin 3 2 2
MIRT553570 NPM3 nucleophosmin/nucleoplasmin 3 2 2
MIRT554844 RECK reversion inducing cysteine rich protein with kazal motifs 2 2
MIRT556069 MTF2 metal response element binding transcription factor 2 2 4
MIRT556898 ITGA2 integrin subunit alpha 2 2 2
MIRT558680 CNIH cornichon family AMPA receptor auxiliary protein 1 1 1
MIRT559032 C20orf24 chromosome 20 open reading frame 24 2 2
MIRT559108 C18orf25 chromosome 18 open reading frame 25 2 2
MIRT559864 GSKIP GSK3B interacting protein 2 2
MIRT560868 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT562268 GRB2 growth factor receptor bound protein 2 2 2
MIRT562419 EIF2S2 eukaryotic translation initiation factor 2 subunit beta 2 2
MIRT562652 ARID1A AT-rich interaction domain 1A 2 4
MIRT563771 ZNF678 zinc finger protein 678 2 2
MIRT564279 DEPDC1B DEP domain containing 1B 2 2
MIRT565253 TRA2B transformer 2 beta homolog 2 4
MIRT565307 TMEM64 transmembrane protein 64 2 2
MIRT566034 RFX1 regulatory factor X1 2 2
MIRT566714 MTMR3 myotubularin related protein 3 2 2
MIRT568087 CELF2 CUGBP Elav-like family member 2 2 2
MIRT568417 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT568766 MYBL1 MYB proto-oncogene like 1 2 2
MIRT569516 THYN1 thymocyte nuclear protein 1 2 2
MIRT571823 PHF19 PHD finger protein 19 2 2
MIRT571995 HOXA9 homeobox A9 2 2
MIRT572174 CELF1 CUGBP Elav-like family member 1 2 2
MIRT572637 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT573756 KHSRP KH-type splicing regulatory protein 2 2
MIRT574089 CCDC132 VPS50, EARP/GARPII complex subunit 2 6
MIRT574311 CMTM6 CKLF like MARVEL transmembrane domain containing 6 2 2
MIRT574512 PSAT1 phosphoserine aminotransferase 1 2 2
MIRT574559 NRBF2 nuclear receptor binding factor 2 2 2
MIRT576686 H6pd hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) 2 2
MIRT608491 NKTR natural killer cell triggering receptor 2 6
MIRT608640 ATP9A ATPase phospholipid transporting 9A (putative) 2 6
MIRT609231 TMEM189 transmembrane protein 189 2 2
MIRT609561 TCEAL4 transcription elongation factor A like 4 2 2
MIRT610193 FAM49A family with sequence similarity 49 member A 2 2
MIRT610681 SYT2 synaptotagmin 2 2 4
MIRT610725 NAV2 neuron navigator 2 2 2
MIRT610813 SGOL2 shugoshin 2 2 2
MIRT610993 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 2
MIRT611030 KCNK10 potassium two pore domain channel subfamily K member 10 2 2
MIRT611339 SLC2A4 solute carrier family 2 member 4 2 2
MIRT611511 HIPK3 homeodomain interacting protein kinase 3 2 2
MIRT611638 EDIL3 EGF like repeats and discoidin domains 3 2 2
MIRT611856 RPL3L ribosomal protein L3 like 2 2
MIRT611905 TRPC3 transient receptor potential cation channel subfamily C member 3 2 2
MIRT612047 PCNXL2 pecanex homolog 2 2 6
MIRT612340 TRIB2 tribbles pseudokinase 2 2 2
MIRT612870 INO80C INO80 complex subunit C 2 2
MIRT613555 AMPD3 adenosine monophosphate deaminase 3 2 2
MIRT614490 MMS22L MMS22 like, DNA repair protein 2 2
MIRT615098 BRD4 bromodomain containing 4 2 2
MIRT616228 PTPN11 protein tyrosine phosphatase, non-receptor type 11 2 2
MIRT617220 GDPGP1 GDP-D-glucose phosphorylase 1 2 2
MIRT617884 ESR1 estrogen receptor 1 2 2
MIRT618344 CD59 CD59 molecule (CD59 blood group) 2 2
MIRT620264 RAPH1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 2 2
MIRT620660 CCDC108 cilia and flagella associated protein 65 2 2
MIRT620761 CCR5 C-C motif chemokine receptor 5 (gene/pseudogene) 2 2
MIRT621416 TXNL1 thioredoxin like 1 2 2
MIRT621676 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 2
MIRT622231 SLC25A51 solute carrier family 25 member 51 2 2
MIRT622377 SALL1 spalt like transcription factor 1 2 2
MIRT622404 RRAGC Ras related GTP binding C 2 2
MIRT622494 RC3H1 ring finger and CCCH-type domains 1 2 2
MIRT623064 NRXN1 neurexin 1 2 2
MIRT623295 MAX MYC associated factor X 2 2
MIRT623691 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT623930 FMNL3 formin like 3 2 2
MIRT623984 FAM208A family with sequence similarity 208 member A 2 2
MIRT624513 C7orf55-LUC7L2 C7orf55-LUC7L2 readthrough 2 2
MIRT624668 ARID4A AT-rich interaction domain 4A 2 2
MIRT624756 ANGPTL2 angiopoietin like 2 2 2
MIRT624949 MARCH2 membrane associated ring-CH-type finger 2 2 2
MIRT625968 RNF2 ring finger protein 2 2 2
MIRT626415 KIAA2018 upstream transcription factor family member 3 2 2
MIRT626882 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627157 ZNF652 zinc finger protein 652 2 2
MIRT627613 SFT2D2 SFT2 domain containing 2 2 2
MIRT627744 RAP2B RAP2B, member of RAS oncogene family 2 4
MIRT627808 PTEN phosphatase and tensin homolog 2 2
MIRT627820 PRR3 proline rich 3 2 2
MIRT630935 UNC93A unc-93 homolog A 2 2
MIRT635930 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638301 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT638437 PNRC1 proline rich nuclear receptor coactivator 1 2 2
MIRT640281 TCF24 transcription factor 24 2 2
MIRT641979 PCMTD2 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 2 2
MIRT644179 GIN1 gypsy retrotransposon integrase 1 2 2
MIRT644439 VDR vitamin D receptor 2 2
MIRT644974 STEAP4 STEAP4 metalloreductase 2 2
MIRT647653 B3GALNT1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 2 2
MIRT648702 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT650120 ZCCHC9 zinc finger CCHC-type containing 9 2 2
MIRT650505 UFM1 ubiquitin fold modifier 1 2 2
MIRT650701 CLNK cytokine dependent hematopoietic cell linker 2 2
MIRT651083 ZNF518B zinc finger protein 518B 2 4
MIRT653644 SLC30A1 solute carrier family 30 member 1 2 2
MIRT653788 SIX4 SIX homeobox 4 2 2
MIRT656773 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT656949 KIAA1456 KIAA1456 2 2
MIRT656981 KDM5A lysine demethylase 5A 2 2
MIRT657225 TOR1AIP2 torsin 1A interacting protein 2 2 4
MIRT657706 GPC5 glypican 5 2 2
MIRT660107 BTBD3 BTB domain containing 3 2 2
MIRT662817 C9orf64 chromosome 9 open reading frame 64 2 2
MIRT665889 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT668140 GINS2 GINS complex subunit 2 2 2
MIRT668566 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT669718 AAGAB alpha and gamma adaptin binding protein 2 2
MIRT685693 TRIM45 tripartite motif containing 45 2 2
MIRT686579 TMPPE transmembrane protein with metallophosphoesterase domain 2 2
MIRT687491 NHLRC2 NHL repeat containing 2 2 2
MIRT687805 KCNJ15 potassium voltage-gated channel subfamily J member 15 2 2
MIRT687968 HHIP hedgehog interacting protein 2 2
MIRT689487 SCIMP SLP adaptor and CSK interacting membrane protein 2 2
MIRT689595 NUDT7 nudix hydrolase 7 2 2
MIRT690501 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT692290 XRN2 5'-3' exoribonuclease 2 2 2
MIRT693060 KIAA1324 KIAA1324 2 2
MIRT697443 ZFHX3 zinc finger homeobox 3 2 2
MIRT698475 TJP1 tight junction protein 1 2 2
MIRT699033 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699785 SEMA4D semaphorin 4D 2 2
MIRT701463 NEO1 neogenin 1 2 2
MIRT701869 MRO maestro 2 2
MIRT702158 MAP3K1 mitogen-activated protein kinase kinase kinase 1 2 2
MIRT703750 FAM126B family with sequence similarity 126 member B 2 2
MIRT704277 DGS2 DiGeorge syndrome/velocardiofacial syndrome complex 2 2 2
MIRT707956 PGM3 phosphoglucomutase 3 2 2
MIRT712747 LAMTOR1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 2 2
MIRT712848 RHOA ras homolog family member A 2 2
MIRT712954 CCBE1 collagen and calcium binding EGF domains 1 2 2
MIRT713119 U2SURP U2 snRNP associated SURP domain containing 2 2
MIRT713148 PKIA cAMP-dependent protein kinase inhibitor alpha 2 2
MIRT715394 TADA3 transcriptional adaptor 3 2 2
MIRT715475 NEGR1 neuronal growth regulator 1 2 2
MIRT715535 G2E3 G2/M-phase specific E3 ubiquitin protein ligase 2 2
MIRT721159 MYOCD myocardin 2 2
MIRT722719 ZNF460 zinc finger protein 460 2 2
MIRT723130 GTF2F2 general transcription factor IIF subunit 2 2 2
MIRT723259 TMLHE trimethyllysine hydroxylase, epsilon 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-54 Nicotine approved 89594 Microarray Caenorhabditis elegans 23765240 2013 up-regualted
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548ac Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-548ac Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-548ac Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-548ac Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-548ac Paclitaxel 36314 NSC125973 approved sensitive cell line (HS578T)
hsa-miR-548ac Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-548ac Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-548ac Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-548ac Tamoxifen+Fulvestrant resistant cell line (LCC9)
hsa-miR-548ac Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)

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