miRTarBase - #MIRT256051


—
pre-miRNA Information
pre-miRNA hsa-mir-4667   
Genomic Coordinates chr9: 35608094 - 35608159
Description Homo sapiens miR-4667 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4667-3p
Sequence 46| UCCCUCCUUCUGUCCCCACAG |66
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM9588049 20 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs774051936 3 dbSNP
rs1178819936 5 dbSNP
rs1467653371 6 dbSNP
rs770405488 6 dbSNP
rs776175657 7 dbSNP
rs370758546 11 dbSNP
rs1341648855 13 dbSNP
rs1023852947 14 dbSNP
rs374809971 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol UBE2K   
Synonyms E2-25K, HIP2, HYPG, LIG, UBC1
Description ubiquitin conjugating enzyme E2 K
Transcript NM_001111112   
Other Transcripts NM_001111113 , NM_005339   
Expression
Putative miRNA Targets on UBE2K
3'UTR of UBE2K
(miRNA target sites are highlighted)		 
>UBE2K|NM_001111112|3'UTR
   1 GGCATAGAGAGCTGCTGATATAGTCAAGCTTGCCTCTTCTTGAGGAGCACCAACATCTGTTATTTTTAGGATTCTGCATA
  81 GATTTCTTTTAAACTGGCATTCTTGCCTAATGATGTTATCTAGGCACCATTGGAGACTGAAAAAAAAAAATCCCTGCTCT
 161 GTAAATAAAGCTAATTAAACGTCTGTGTAAATTTAAAAAGGGGAAATACTTTAATTTTTTTTCTTAATAGTGTAAAAATT
 241 CCCTGAGCTAAGCTAAAACCATGGAAGAAACATGCTACTTTAGTGTTTAGCAGTGTACCAAGACTAGCAAGAGTTTGCTT
 321 CAGGATTTTGTTGAATAATTAAGATAATATTTTGAGTGTGTCAGGGCCATTCAAATTGTTGGTGTTGCATCACAGCTACC
 401 TTAACTGTTTTTAACATGGATCCTCTGTGCCTGTGAATTTACTTGCATGCTTGTACTTGACTTCTTAGGATGGGTAGCTG
 481 AAAAGACCACCATTTTAAGCATTTGAGAATTCTTAAATATGAAATTTATTCAGAATTGAAGATGGTGACCTATTCAGAGC
 561 CTTTTTGTCCTTGTCAACAGACTGGGACAGTGTCTGATTCCCCCTTCACCCCCCCCACCCCCGCCTTGCCACACACAGCT
 641 AATATTCTAATGGTAAATTTCTCTGTATCAGGTGGGGAAATGTGCTGAAGGACAGTATGTATCCCTTGCTTCATTTTTAG
 721 GTCGTAGGTTTGGAATGTCTTGTCCCAGTTCTTCAAACACTCTTAAATTTTTCTTAAGTAATGTAAAAATGGAACTGCCA
 801 ATTTTATTTCTCTTGCAAAAATAGTAAATACTTGATGTTACATTATTCCCAGGTTTAATGAAAGAACCCAACTTAGTTTT
 881 TCAGTGAATTTGACACCTATTTTTTAGTGATGAAATTTTTCTTTGAGAACTGGCAAGGATGCAGTCAGCTGTTTGCAGTT
 961 TTTAGCCTGATTTTGGGGTCTATAGAGATTGCTTTATTGGATACTTCAAGTCATTCTTGCTTGCACTTCCCCTATTGACA
1041 CATGAAAGCTGTGTTGGTGTTTTATTGTACATACTTCAGATGCACATAGGAATAGAAGTGTGTTATAAATCTAGCTTTCT
1121 TTATGATGTTTCTGATAATACGAGAATTGAAAACTTTACCTTCTCTTGTACATAGTCAGACTATTTGTATTAAATTTACA
1201 TTTCATTCTAAGTTCAAAAGTTTGAAAATTATTAGTTTTGCAAGATCACACACTAATGTAACCATTTTATGAAGGTTGAA
1281 GTGGATTTATGCAGGCAGTTCTATATATAGAAATACAATTCTTTTTAAATTTTTAGGACCAATACAAAATAACAAAAATG
1361 TAATGGAATCAGACTGAATTAAAGTAAGGCTGTATATTGAAAGTCATATTATAAAAGGTTTGCTTTCTTTAAGTGTTATT
1441 TATCTTAAATTATAATCGTTAAATGTTTGGAAGATAATTTTTGAATCATAACGTCAGCATAACTTCATTTGACTTCTCAA
1521 TAATCTTGATACTAGAAGCAATAAAAGAACCATTATTAAATATATTGTAATGTTAAAGATGTGAAGGTTCTTCCAAAAAT
1601 TTGTAAGGCTTTCCTAATTAACAGTAAACTCTTATAGCTGATATTATTACATACTAAACACAAGTTGCTGTTTTTTCCCC
1681 ATATGTTTGCTTACGCATGTCTTTATACAATCACCTCTTTTTATTGCTGTAGTTTATTTTCTAAAGATGCCAAAGGAAAC
1761 AAGATTTTTCTTTATTTATTTTAAATACCTGAAACCTCGTACTTTATATTTTGAAGTAAGGTGGGATTGTGTGAAAATGT
1841 GGATGGTTTTTCTCCAGTGTTGGTTAGAACTACTTTTTTTAAGTGGAGGGCAACTTGGTAGTATTAGTAGAATTTGGGTT
1921 TAAAAATATCAGACACATCTACCCAGTTTATTTTTTGCCTGTATTATCAGGGTATATTTAATTGTCCTGTGGTTAAACAA
2001 AGGTGAGAGAGCTCAGAGGTTTCTAAAGGTCAAGCATTTTACATATATACATACATACATGCTCTTGGAGGCAGCTATAT
2081 CCTGCTTTGATTTTTATGCACATGAGCCCTATAGGGTTATATACTCATCTAACTACACTTCAGCATCCCCAGTGCCCAAG
2161 AAATTGGAAAGTACAATATTTGGTTTGAGACATTCTTCATAAAAGATTCTTTATTATAAAAATTTACCTCATTTACATTT
2241 AATGTGATGATCTTTTTTTTCCTTTCTGGTATATTTCCCACTGTACTGTTTGGTTTTTGTTATTCTCTTGTCTGTGGGTA
2321 GATTTAGTTACCCAAACATAGAAACTAAAGCAATTGCTTTTTTCCTCTGGTCTTAAATATGTTTGGACAAAAAGACACTA
2401 AAAGGTCAGGCCTAGGGGAAAAGTACCCTGGTGGAAATTATTTTTGTAATTCTTAATATTTTTGAGTTGGCTCCGTTTGT
2481 CAGTTTTAAAAGCCTCAAAAATTATGTTAAAAAAAAAATCCAGTGAAATCCCATTTAGGGCAGGCCGATTTGTTAGAAGT
2561 CACTGATGCTCCAGTAGGCTTTTGTTATAATCAGGCCTGTTTCCTGAGTATGTGCCTCTTTTAAAAGAAGAAATAATTAG
2641 CTGTATAGTATTTCAGTACTGATGAATGAATGAATGAATGAATGGCAGTTAGTGGACCCAAATAAGTATTCAGTGGTATA
2721 TAAATATTTGAGGAACTAGGTACTGAATTAGGTGCTCTGAGTTGGCACCCCGAAATGTTTGGAATCACGACTATGATTTA
2801 CTTAAACACGTAACACATTCAAGGATATATAAATGGAGTCTAAGTATTTTGCTTTTGAAGAGAATAATCTATGAAATGGA
2881 AGACTTGATTTTTTTTTTCATTTTTTAGAAGTAATACACATTTATGATTGTTGGCACATAAAACTATGCAAAATAATTCT
2961 TTTTAAGTATCTGTAAGAAAGAATTGGCAGTTTAAACGGATTTTGCTTATTTATGCACTACAGAATGCAGCATACTGTAT
3041 TACTGTTGAGGCTGCTTAATAAGTTTACCAATGTGAAAAGCAGATCTTGGGTATAAGTGTATGCCTGATTTGAGCTTTTA
3121 AAACTGTGCAGTAGGTGTATGGTAATGTTTTACAATCCTATGTAGCAAAATAGGAAATTATGAATTTTTGTTGTTATTGT
3201 TTTAAAGATTTAAGATGGATTGGGGTAGGGAACAGCTGGAGCCAGGTATACCTTCTAGTATGTAGAGGGAAACAATGTTT
3281 AGATAGGAAAAAGGAAGCCGTCTGTTTACAGTTAACTTTATTTCATGGACTTCTACAAAATGTTGTATTAATCACTTTTT
3361 CTAGTTCAAGGAATTTCAATTCCAGGGTACAAACCATTGATTTAAAAATTACGTTTCCATTCTTTTTAGTATCAGTTTAA
3441 AGTAAATGCTTACCATCAGCCAGTTGCTGTCACTGGGAAGAAGGCAACTTGAAGTATTTACTGATAAAATAGCCTTTATT
3521 CCCAAGTGTGACTTTTCTTCAGTGTCTACATATTATGTCACACGTTCTATTTGCACTGCTGCAATATAGATCAAAGATCT
3601 TGTGGCATAGGGGTAGGGGAGTGTTAGTATCTCCCTTGTCCCATTTGTTCTGTTACTGCTTCATTGGACTGATACACCCT
3681 CATGAACTTGCAATCACCTAAATGGAAGTCTTGAATGTGTCACCTTTTGCTTGGTTATTTCAACCATGCTGCTATATATA
3761 ATCAGGTGTGGCACAGTTTGTCAGTTTGATTATAGGTGTGAGTGGATAGAAATCATTACACTGTGCTGTTAACGATCCTT
3841 GTCTGCTTGCTGTTACCTACTTTTTACAGGCATCATAATAAAAGCTAGACTATTTCTTTGGGGGGAAAGAGACTTATTTA
3921 ATGTAATTTAAAAAACTTTTCCAATAGAAAATGAAATATTATTGAAAATAATATCTATTTTTTAGCTTTCAGCAATTGAT
4001 GGTGCTTTGTTGTGGTGTCTGCTGGAAGTCTACTGCCATTATAGGGAACCTTGCTTGTTAGCTTCTCTAGATCTCTATTC
4081 TAAACAATCTGTTAGTGATGATAAATTCTGTAGGAGGGTCTATTCTGAGCCGTTAACTTCCTGTAAGGGGAAAATGGGTG
4161 GGTTACCAGAAATACCATTGAAGCAGGGTGGGCTGTGGGGTGGAAGGTTGGGGTATTTGTCTTGAGAATTAAAAACTACG
4241 AAACACTTTTGTACACAACTGATTTTTTAAAAAATAAACACATTTTTAAAGATGTTGAATTTTTCCCCCCTTATTGGGAA
4321 TTCTTAAAAATAAATGCATGCATGTTTTCCCCTGAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gaCACCCCUGU------CUUCCUCCCu 5'
            |||  ||:|      | ||||||| 
Target 5' taGTGATGATAAATTCTGTAGGAGGGt 3'
 4093 - 4119 149.00 -16.80
2 
miRNA  3' gacaccccUGUCUUCCUCCCu 5'
                  |: |||| |||| 
Target 5' gaaataccATTGAAGCAGGGt 3'
 4169 - 4189 121.00 -9.60
3 
miRNA  3' gacaccccugucuuCCUCCCu 5'
                        |||||| 
Target 5' tactttttttaagtGGAGGGc 3'
 1871 - 1891 120.00 -13.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30178178 6 COSMIC
COSN30503272 7 COSMIC
COSN28249992 9 COSMIC
COSN30118434 30 COSMIC
COSN30177613 78 COSMIC
COSN31527726 87 COSMIC
COSN24848075 151 COSMIC
COSN26577281 173 COSMIC
COSN31514133 254 COSMIC
COSN27163586 262 COSMIC
COSN30541237 440 COSMIC
COSN31541728 500 COSMIC
COSN28003147 608 COSMIC
COSN29125450 609 COSMIC
COSN20099969 617 COSMIC
COSN1296897 624 COSMIC
COSN27151466 778 COSMIC
COSN22751611 821 COSMIC
COSN20918420 1249 COSMIC
COSN7490198 1466 COSMIC
COSN20240288 1539 COSMIC
COSN29137403 2412 COSMIC
COSN4835740 2449 COSMIC
COSN28937039 2519 COSMIC
COSN4835741 2579 COSMIC
COSN29023020 2828 COSMIC
COSN20099972 2899 COSMIC
COSN26831731 2998 COSMIC
COSN16909237 3182 COSMIC
COSN27317501 3182 COSMIC
COSN14709596 3676 COSMIC
COSN8349496 3756 COSMIC
COSN23353999 3882 COSMIC
COSN20091031 4139 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs773197431 2 dbSNP
rs1024513772 3 dbSNP
rs778574243 4 dbSNP
rs781278062 5 dbSNP
rs1367990180 9 dbSNP
rs746114221 14 dbSNP
rs770040246 16 dbSNP
rs200943921 18 dbSNP
rs1368883822 19 dbSNP
rs971940759 22 dbSNP
rs780224155 23 dbSNP
rs368526773 25 dbSNP
rs1203247814 30 dbSNP
rs1487320271 34 dbSNP
rs1267640666 35 dbSNP
rs371912997 38 dbSNP
rs1209783753 43 dbSNP
rs1265961491 48 dbSNP
rs1451864847 50 dbSNP
rs773026274 51 dbSNP
rs1213824955 54 dbSNP
rs568751368 60 dbSNP
rs1456907937 82 dbSNP
rs1256785781 86 dbSNP
rs918819048 98 dbSNP
rs1308535676 101 dbSNP
rs768970637 107 dbSNP
rs924835015 111 dbSNP
rs934998519 112 dbSNP
rs1159267080 122 dbSNP
rs1370025718 127 dbSNP
rs760521754 131 dbSNP
rs1410669024 136 dbSNP
rs1457162654 138 dbSNP
rs1319192019 139 dbSNP
rs1398190637 140 dbSNP
rs1416071050 140 dbSNP
rs879192679 140 dbSNP
rs1355000696 145 dbSNP
rs989175849 147 dbSNP
rs914892835 152 dbSNP
rs1333692534 167 dbSNP
rs1044097829 171 dbSNP
rs931790018 173 dbSNP
rs1338936562 181 dbSNP
rs531372270 182 dbSNP
rs1438599888 190 dbSNP
rs1235844423 200 dbSNP
rs1196960478 201 dbSNP
rs1289056870 204 dbSNP
rs1050563983 210 dbSNP
rs1481263499 213 dbSNP
rs1255867587 214 dbSNP
rs551041215 215 dbSNP
rs571031145 216 dbSNP
rs1304525155 227 dbSNP
rs533703935 229 dbSNP
rs1000418599 233 dbSNP
rs553558676 247 dbSNP
rs1374866874 248 dbSNP
rs1328644418 249 dbSNP
rs1475812531 253 dbSNP
rs567505401 262 dbSNP
rs1257720990 267 dbSNP
rs1483427484 271 dbSNP
rs1199675934 272 dbSNP
rs956143640 273 dbSNP
rs998153579 274 dbSNP
rs1464416074 276 dbSNP
rs560803713 279 dbSNP
rs1173969098 282 dbSNP
rs944513257 289 dbSNP
rs1182522796 320 dbSNP
rs953997588 322 dbSNP
rs1378054771 325 dbSNP
rs556460087 326 dbSNP
rs1419127822 328 dbSNP
rs1157531149 329 dbSNP
rs772525549 346 dbSNP
rs1486908834 364 dbSNP
rs1281505237 368 dbSNP
rs1216298360 369 dbSNP
rs909950505 370 dbSNP
rs1288401687 374 dbSNP
rs1379900133 375 dbSNP
rs1311994090 387 dbSNP
rs1466817559 389 dbSNP
rs1394232090 398 dbSNP
rs962813211 401 dbSNP
rs1313292852 404 dbSNP
rs879883887 407 dbSNP
rs994694020 411 dbSNP
rs1453925398 413 dbSNP
rs1367361916 428 dbSNP
rs1162014456 430 dbSNP
rs1476492326 446 dbSNP
rs939516664 448 dbSNP
rs1193459134 450 dbSNP
rs1027647899 469 dbSNP
rs1264207828 474 dbSNP
rs773705706 494 dbSNP
rs183773736 508 dbSNP
rs1263763516 515 dbSNP
rs1308912689 523 dbSNP
rs544642733 525 dbSNP
rs1349908966 527 dbSNP
rs1408102477 543 dbSNP
rs1013012606 546 dbSNP
rs1336886944 557 dbSNP
rs766722696 568 dbSNP
rs1303245654 569 dbSNP
rs1217824753 574 dbSNP
rs1312706711 578 dbSNP
rs1338138592 586 dbSNP
rs201754771 589 dbSNP
rs916846257 589 dbSNP
rs1254010995 591 dbSNP
rs1291313515 601 dbSNP
rs1024773772 602 dbSNP
rs1344103652 606 dbSNP
rs1419260228 607 dbSNP
rs1477080495 607 dbSNP
rs1451280893 608 dbSNP
rs558251995 608 dbSNP
rs1012247564 609 dbSNP
rs1337299277 609 dbSNP
rs3839130 609 dbSNP
rs1205388524 610 dbSNP
rs904268028 611 dbSNP
rs1250655689 612 dbSNP
rs370221019 613 dbSNP
rs578153864 614 dbSNP
rs1491107078 616 dbSNP
rs368041259 617 dbSNP
rs374446588 617 dbSNP
rs1491066115 618 dbSNP
rs202148499 618 dbSNP
rs891591539 618 dbSNP
rs1491215417 619 dbSNP
rs1434250678 621 dbSNP
rs1445355736 623 dbSNP
rs1161167861 624 dbSNP
rs1355620057 626 dbSNP
rs1393628885 628 dbSNP
rs1064268 630 dbSNP
rs1432054932 632 dbSNP
rs1169411178 634 dbSNP
rs1370199673 636 dbSNP
rs1427827499 638 dbSNP
rs1031830968 639 dbSNP
rs187932422 646 dbSNP
rs1196203442 650 dbSNP
rs1344030190 655 dbSNP
rs957633279 658 dbSNP
rs1277819943 664 dbSNP
rs1295359619 664 dbSNP
rs1236060986 668 dbSNP
rs140325930 670 dbSNP
rs1386120891 676 dbSNP
rs914945353 678 dbSNP
rs1367042576 679 dbSNP
rs1006880586 681 dbSNP
rs1016979234 703 dbSNP
rs1400495085 704 dbSNP
rs1228889987 705 dbSNP
rs963113377 719 dbSNP
rs1273387432 722 dbSNP
rs1379869724 724 dbSNP
rs529532479 725 dbSNP
rs918676232 736 dbSNP
rs985915169 736 dbSNP
rs776737340 749 dbSNP
rs1441716364 752 dbSNP
rs1255143163 759 dbSNP
rs960878169 760 dbSNP
rs1348179198 761 dbSNP
rs944458711 765 dbSNP
rs192977330 769 dbSNP
rs1352205593 770 dbSNP
rs1280699555 775 dbSNP
rs1447957658 775 dbSNP
rs764854546 777 dbSNP
rs948335453 782 dbSNP
rs1315216399 788 dbSNP
rs879689625 802 dbSNP
rs1360180231 805 dbSNP
rs1157195336 810 dbSNP
rs542937036 816 dbSNP
rs1402583109 817 dbSNP
rs546473202 823 dbSNP
rs1162671787 826 dbSNP
rs894480951 829 dbSNP
rs935668704 831 dbSNP
rs1255257235 835 dbSNP
rs531179770 838 dbSNP
rs1390020093 858 dbSNP
rs550978007 859 dbSNP
rs765367602 868 dbSNP
rs1262106622 869 dbSNP
rs1167231102 872 dbSNP
rs1448310442 882 dbSNP
rs1284348711 899 dbSNP
rs570967934 900 dbSNP
rs1013311935 911 dbSNP
rs1052843991 912 dbSNP
rs891557275 913 dbSNP
rs1234363473 916 dbSNP
rs1340289038 931 dbSNP
rs1287426089 933 dbSNP
rs933821093 937 dbSNP
rs1345971159 940 dbSNP
rs527387229 942 dbSNP
rs1024409164 951 dbSNP
rs1459919767 957 dbSNP
rs1050943286 967 dbSNP
rs74984195 969 dbSNP
rs77569533 971 dbSNP
rs889697586 976 dbSNP
rs1006849526 977 dbSNP
rs1422668568 978 dbSNP
rs547134916 979 dbSNP
rs907309882 983 dbSNP
rs115213470 991 dbSNP
rs1242319399 997 dbSNP
rs1031884898 1001 dbSNP
rs994589982 1009 dbSNP
rs533908997 1014 dbSNP
rs1296588995 1019 dbSNP
rs961098662 1022 dbSNP
rs1317775490 1027 dbSNP
rs1293918788 1033 dbSNP
rs185074607 1035 dbSNP
rs879934612 1036 dbSNP
rs1274453680 1038 dbSNP
rs1438884492 1040 dbSNP
rs1389575597 1043 dbSNP
rs1313031290 1049 dbSNP
rs1320543957 1053 dbSNP
rs1011838103 1057 dbSNP
rs1023794665 1058 dbSNP
rs1353811987 1072 dbSNP
rs1028555214 1086 dbSNP
rs549782889 1087 dbSNP
rs1419875965 1090 dbSNP
rs1228739179 1106 dbSNP
rs1192609066 1115 dbSNP
rs1271748365 1116 dbSNP
rs1452126813 1128 dbSNP
rs1466635729 1132 dbSNP
rs953086348 1142 dbSNP
rs569952764 1143 dbSNP
rs979616764 1145 dbSNP
rs757835609 1164 dbSNP
rs925537793 1166 dbSNP
rs1250101495 1169 dbSNP
rs1485119565 1174 dbSNP
rs1183773549 1180 dbSNP
rs911541876 1181 dbSNP
rs1278256932 1186 dbSNP
rs1232383181 1209 dbSNP
rs1038561073 1249 dbSNP
rs1304291111 1254 dbSNP
rs1446062615 1259 dbSNP
rs538205489 1262 dbSNP
rs1423260289 1268 dbSNP
rs1162883683 1275 dbSNP
rs1414366271 1282 dbSNP
rs1296384118 1292 dbSNP
rs1457690409 1297 dbSNP
rs1354913886 1299 dbSNP
rs1172709695 1304 dbSNP
rs1432513233 1305 dbSNP
rs565224098 1306 dbSNP
rs60727913 1308 dbSNP
rs578106452 1314 dbSNP
rs1449982847 1315 dbSNP
rs1303008201 1331 dbSNP
rs919096866 1341 dbSNP
rs1050912925 1343 dbSNP
rs930441717 1345 dbSNP
rs1378002477 1354 dbSNP
rs534279581 1356 dbSNP
rs1226328740 1359 dbSNP
rs1048987155 1361 dbSNP
rs1237265619 1393 dbSNP
rs1209123248 1395 dbSNP
rs915787506 1397 dbSNP
rs866188997 1398 dbSNP
rs532405686 1404 dbSNP
rs1229515498 1406 dbSNP
rs1239603631 1411 dbSNP
rs1315191306 1412 dbSNP
rs1309167240 1413 dbSNP
rs1393077019 1417 dbSNP
rs190114896 1418 dbSNP
rs1312076370 1423 dbSNP
rs1412679499 1428 dbSNP
rs1376940461 1431 dbSNP
rs1313105369 1436 dbSNP
rs1445587436 1441 dbSNP
rs1452499621 1441 dbSNP
rs866633891 1443 dbSNP
rs1361573876 1445 dbSNP
rs181633173 1455 dbSNP
rs1046171099 1457 dbSNP
rs751465781 1458 dbSNP
rs907198861 1459 dbSNP
rs896563953 1463 dbSNP
rs145375096 1464 dbSNP
rs1258558378 1466 dbSNP
rs1486857240 1466 dbSNP
rs1204792243 1467 dbSNP
rs1023679998 1473 dbSNP
rs1472978200 1474 dbSNP
rs969495691 1475 dbSNP
rs543227814 1481 dbSNP
rs979587272 1489 dbSNP
rs1317499101 1493 dbSNP
rs1292567313 1494 dbSNP
rs1053160077 1498 dbSNP
rs1357116436 1499 dbSNP
rs1032575655 1500 dbSNP
rs1381307239 1507 dbSNP
rs1405720317 1511 dbSNP
rs1290135731 1520 dbSNP
rs1415896827 1521 dbSNP
rs1176522798 1531 dbSNP
rs893325779 1533 dbSNP
rs563005818 1535 dbSNP
rs73145259 1544 dbSNP
rs1028477620 1545 dbSNP
rs1309512705 1548 dbSNP
rs1192877492 1552 dbSNP
rs137928176 1564 dbSNP
rs1008475666 1568 dbSNP
rs1468085531 1572 dbSNP
rs955027566 1577 dbSNP
rs758706892 1578 dbSNP
rs1211753069 1579 dbSNP
rs1336767785 1580 dbSNP
rs1019057659 1582 dbSNP
rs1279422423 1587 dbSNP
rs1284599224 1595 dbSNP
rs1226357308 1600 dbSNP
rs1324372498 1603 dbSNP
rs1297234451 1605 dbSNP
rs965647187 1609 dbSNP
rs142395700 1610 dbSNP
rs1369630912 1622 dbSNP
rs918985308 1630 dbSNP
rs910986328 1633 dbSNP
rs184742325 1636 dbSNP
rs1312026912 1638 dbSNP
rs1460761702 1648 dbSNP
rs984620392 1671 dbSNP
rs919841095 1677 dbSNP
rs1453943819 1682 dbSNP
rs929917239 1695 dbSNP
rs547159621 1696 dbSNP
rs1469784060 1703 dbSNP
rs896441286 1707 dbSNP
rs548731098 1711 dbSNP
rs1337195867 1727 dbSNP
rs1252794273 1730 dbSNP
rs374814749 1743 dbSNP
rs1369736082 1753 dbSNP
rs1300654071 1765 dbSNP
rs757651589 1767 dbSNP
rs1442442030 1775 dbSNP
rs905307813 1784 dbSNP
rs1328769707 1785 dbSNP
rs1478962598 1788 dbSNP
rs1000973795 1789 dbSNP
rs1191751669 1790 dbSNP
rs529819982 1792 dbSNP
rs928635703 1799 dbSNP
rs1032955212 1800 dbSNP
rs112988404 1808 dbSNP
rs1454738886 1830 dbSNP
rs1053205741 1853 dbSNP
rs1181020434 1858 dbSNP
rs1010193748 1875 dbSNP
rs1252445974 1894 dbSNP
rs1205547367 1896 dbSNP
rs781488035 1899 dbSNP
rs145939184 1902 dbSNP
rs1370797405 1904 dbSNP
rs1011648640 1907 dbSNP
rs1278381496 1911 dbSNP
rs1050385888 1919 dbSNP
rs986484664 1930 dbSNP
rs1414528634 1944 dbSNP
rs1314998313 1950 dbSNP
rs889950246 1950 dbSNP
rs1439192837 1955 dbSNP
rs1276000567 1965 dbSNP
rs368157424 1970 dbSNP
rs973925859 1977 dbSNP
rs1365443210 1985 dbSNP
rs1182689451 2005 dbSNP
rs1276955927 2006 dbSNP
rs1008902107 2020 dbSNP
rs1019823018 2022 dbSNP
rs569807224 2030 dbSNP
rs1212599133 2043 dbSNP
rs901537522 2044 dbSNP
rs1442567130 2046 dbSNP
rs1204784849 2047 dbSNP
rs1221522464 2051 dbSNP
rs993096736 2052 dbSNP
rs533692045 2053 dbSNP
rs917847547 2055 dbSNP
rs1295431635 2058 dbSNP
rs538933263 2059 dbSNP
rs1222161185 2060 dbSNP
rs1246072370 2084 dbSNP
rs1452273110 2085 dbSNP
rs1190273916 2086 dbSNP
rs1390835529 2102 dbSNP
rs949368261 2107 dbSNP
rs1448487629 2108 dbSNP
rs1474808224 2121 dbSNP
rs1415395296 2134 dbSNP
rs1189748610 2137 dbSNP
rs1472933242 2139 dbSNP
rs1241131122 2140 dbSNP
rs779275748 2143 dbSNP
rs984554803 2160 dbSNP
rs1269382964 2161 dbSNP
rs372359500 2175 dbSNP
rs1333282672 2181 dbSNP
rs571653678 2184 dbSNP
rs534213800 2185 dbSNP
rs189648908 2190 dbSNP
rs180847218 2200 dbSNP
rs928507275 2209 dbSNP
rs746400091 2212 dbSNP
rs934550354 2214 dbSNP
rs988834481 2220 dbSNP
rs772173903 2222 dbSNP
rs914573861 2223 dbSNP
rs1325231274 2226 dbSNP
rs1394402671 2243 dbSNP
rs947484650 2248 dbSNP
rs1392136102 2250 dbSNP
rs1166712214 2253 dbSNP
rs372943361 2253 dbSNP
rs1405706822 2258 dbSNP
rs1439424833 2262 dbSNP
rs1300257860 2263 dbSNP
rs1030976176 2266 dbSNP
rs1366442019 2267 dbSNP
rs1226932561 2269 dbSNP
rs1268672630 2270 dbSNP
rs1358495150 2272 dbSNP
rs1192410320 2286 dbSNP
rs1467564296 2288 dbSNP
rs1255410454 2292 dbSNP
rs1222860812 2293 dbSNP
rs1307274526 2296 dbSNP
rs1271254478 2304 dbSNP
rs1049798544 2307 dbSNP
rs1228973594 2315 dbSNP
rs889953593 2316 dbSNP
rs1216557325 2324 dbSNP
rs1272395926 2325 dbSNP
rs778187323 2328 dbSNP
rs1302791868 2333 dbSNP
rs1438771671 2339 dbSNP
rs1368747407 2340 dbSNP
rs1041707960 2346 dbSNP
rs1248384996 2365 dbSNP
rs1464304550 2366 dbSNP
rs1190524219 2368 dbSNP
rs1369853444 2370 dbSNP
rs1472803366 2371 dbSNP
rs1162125057 2373 dbSNP
rs1167973973 2378 dbSNP
rs1431277862 2380 dbSNP
rs747587198 2391 dbSNP
rs994363186 2399 dbSNP
rs1452028924 2402 dbSNP
rs1270175005 2406 dbSNP
rs1323190756 2408 dbSNP
rs1182058321 2411 dbSNP
rs1192304265 2420 dbSNP
rs1480555888 2426 dbSNP
rs574095040 2432 dbSNP
rs1025976368 2446 dbSNP
rs771296463 2453 dbSNP
rs887436111 2472 dbSNP
rs1026744800 2475 dbSNP
rs33972462 2476 dbSNP
rs760277836 2476 dbSNP
rs951262225 2476 dbSNP
rs1006392159 2486 dbSNP
rs148181347 2497 dbSNP
rs949336036 2497 dbSNP
rs1296289780 2505 dbSNP
rs970308003 2506 dbSNP
rs558846704 2509 dbSNP
rs980734155 2509 dbSNP
rs1332832132 2510 dbSNP
rs1378868584 2531 dbSNP
rs1176110931 2546 dbSNP
rs981325583 2547 dbSNP
rs759830490 2548 dbSNP
rs955979527 2561 dbSNP
rs1461721153 2566 dbSNP
rs1349612800 2570 dbSNP
rs1184832550 2575 dbSNP
rs756510889 2576 dbSNP
rs1257150452 2578 dbSNP
rs1203168422 2589 dbSNP
rs1258088490 2592 dbSNP
rs1256696023 2596 dbSNP
rs1054250396 2600 dbSNP
rs1215131291 2609 dbSNP
rs571127457 2631 dbSNP
rs1424917348 2639 dbSNP
rs1304779811 2640 dbSNP
rs1230066824 2649 dbSNP
rs1007853821 2662 dbSNP
rs539437315 2662 dbSNP
rs746735371 2662 dbSNP
rs758398425 2662 dbSNP
rs1302968705 2671 dbSNP
rs1452389330 2673 dbSNP
rs1344013084 2675 dbSNP
rs1161981529 2679 dbSNP
rs914582067 2682 dbSNP
rs1417595268 2687 dbSNP
rs1186206177 2688 dbSNP
rs1425831740 2693 dbSNP
rs868566841 2697 dbSNP
rs947368496 2701 dbSNP
rs1186072155 2703 dbSNP
rs985965001 2709 dbSNP
rs911282424 2725 dbSNP
rs1484927176 2739 dbSNP
rs944108800 2750 dbSNP
rs1210523560 2753 dbSNP
rs186222079 2756 dbSNP
rs899467207 2757 dbSNP
rs576274712 2759 dbSNP
rs1231199164 2769 dbSNP
rs1341934114 2772 dbSNP
rs1312976806 2773 dbSNP
rs1041242173 2776 dbSNP
rs995197751 2778 dbSNP
rs1254740323 2788 dbSNP
rs1027128344 2793 dbSNP
rs1458256225 2798 dbSNP
rs376685483 2800 dbSNP
rs1163277682 2804 dbSNP
rs565270077 2810 dbSNP
rs191097862 2811 dbSNP
rs983012651 2815 dbSNP
rs930262062 2817 dbSNP
rs1250016917 2831 dbSNP
rs1189247684 2840 dbSNP
rs1453408083 2841 dbSNP
rs1465330666 2841 dbSNP
rs1157183857 2852 dbSNP
rs556149368 2865 dbSNP
rs1265747497 2871 dbSNP
rs1048593934 2875 dbSNP
rs1226244002 2880 dbSNP
rs980621505 2882 dbSNP
rs112317825 2889 dbSNP
rs34111123 2889 dbSNP
rs397993049 2889 dbSNP
rs771217078 2889 dbSNP
rs1324457397 2899 dbSNP
rs1396804028 2900 dbSNP
rs1391912440 2907 dbSNP
rs1312540513 2908 dbSNP
rs887447573 2916 dbSNP
rs778551574 2928 dbSNP
rs1392236551 2939 dbSNP
rs1169347050 2945 dbSNP
rs936644625 2947 dbSNP
rs1394462305 2950 dbSNP
rs989518783 2963 dbSNP
rs541039853 2974 dbSNP
rs913962599 2975 dbSNP
rs560783998 2979 dbSNP
rs1051932016 2983 dbSNP
rs1335095177 2992 dbSNP
rs762499750 2994 dbSNP
rs181181576 2998 dbSNP
rs763629075 2999 dbSNP
rs1345506344 3012 dbSNP
rs1003032168 3017 dbSNP
rs58339883 3023 dbSNP
rs1277779927 3024 dbSNP
rs141581839 3026 dbSNP
rs1048092222 3029 dbSNP
rs761624717 3033 dbSNP
rs886853905 3035 dbSNP
rs1249281808 3039 dbSNP
rs1352187811 3046 dbSNP
rs1308845316 3052 dbSNP
rs1418988256 3072 dbSNP
rs1373711843 3073 dbSNP
rs563465043 3074 dbSNP
rs1174348899 3087 dbSNP
rs1478979681 3094 dbSNP
rs532383295 3100 dbSNP
rs1021525969 3105 dbSNP
rs1471480383 3106 dbSNP
rs1024688032 3108 dbSNP
rs1205436176 3111 dbSNP
rs1485119202 3135 dbSNP
rs970506340 3136 dbSNP
rs969134929 3140 dbSNP
rs777533132 3160 dbSNP
rs1373874881 3161 dbSNP
rs186399744 3162 dbSNP
rs373086900 3165 dbSNP
rs1414427259 3168 dbSNP
rs989880975 3171 dbSNP
rs1336298296 3178 dbSNP
rs1395925510 3180 dbSNP
rs913943634 3181 dbSNP
rs554695744 3182 dbSNP
rs1365308882 3184 dbSNP
rs1303365489 3194 dbSNP
rs546053834 3198 dbSNP
rs1413948710 3200 dbSNP
rs1331425975 3202 dbSNP
rs1182575710 3218 dbSNP
rs976797882 3219 dbSNP
rs1474706113 3225 dbSNP
rs918764030 3226 dbSNP
rs1233314907 3228 dbSNP
rs987522192 3229 dbSNP
rs566002407 3234 dbSNP
rs911995337 3239 dbSNP
rs1300720025 3244 dbSNP
rs1269186041 3250 dbSNP
rs1233031105 3251 dbSNP
rs527651646 3272 dbSNP
rs1343848335 3274 dbSNP
rs1377295625 3274 dbSNP
rs1205497357 3282 dbSNP
rs750245971 3288 dbSNP
rs910164077 3291 dbSNP
rs1479394605 3293 dbSNP
rs1039244156 3295 dbSNP
rs920835372 3300 dbSNP
rs948285117 3301 dbSNP
rs1270121790 3312 dbSNP
rs1454934613 3325 dbSNP
rs1044107178 3330 dbSNP
rs1164646906 3336 dbSNP
rs1393722318 3337 dbSNP
rs1472882727 3346 dbSNP
rs1241046268 3349 dbSNP
rs1186065529 3354 dbSNP
rs1451533692 3355 dbSNP
rs1466675793 3367 dbSNP
rs1249155187 3372 dbSNP
rs1213531472 3374 dbSNP
rs755965429 3387 dbSNP
rs150895830 3391 dbSNP
rs1353973948 3397 dbSNP
rs372245324 3399 dbSNP
rs886741769 3403 dbSNP
rs1204470435 3404 dbSNP
rs1003847068 3413 dbSNP
rs190335842 3414 dbSNP
rs1295562062 3415 dbSNP
rs1437331974 3432 dbSNP
rs1367356385 3435 dbSNP
rs1002632006 3438 dbSNP
rs1321130665 3443 dbSNP
rs1435596996 3459 dbSNP
rs1056861049 3465 dbSNP
rs1325233942 3486 dbSNP
rs1405616026 3489 dbSNP
rs1389143657 3490 dbSNP
rs1391366231 3492 dbSNP
rs1166217050 3503 dbSNP
rs1440161271 3506 dbSNP
rs891651178 3514 dbSNP
rs1010043454 3515 dbSNP
rs1021457084 3522 dbSNP
rs1367153148 3527 dbSNP
rs968689556 3533 dbSNP
rs1248845651 3535 dbSNP
rs906313953 3535 dbSNP
rs752940706 3541 dbSNP
rs139371148 3544 dbSNP
rs770868025 3550 dbSNP
rs145532652 3558 dbSNP
rs976807886 3560 dbSNP
rs918648071 3561 dbSNP
rs951563760 3562 dbSNP
rs1302673028 3564 dbSNP
rs984276786 3570 dbSNP
rs182893605 3581 dbSNP
rs1365343632 3595 dbSNP
rs1469296430 3597 dbSNP
rs1436891890 3598 dbSNP
rs1010784584 3602 dbSNP
rs1021299906 3609 dbSNP
rs1431183488 3612 dbSNP
rs1370671467 3620 dbSNP
rs777934251 3622 dbSNP
rs1174688877 3632 dbSNP
rs1431998525 3638 dbSNP
rs1427833168 3645 dbSNP
rs1192208695 3649 dbSNP
rs1472463362 3657 dbSNP
rs1207560235 3661 dbSNP
rs538872693 3666 dbSNP
rs1251490482 3675 dbSNP
rs305112 3676 dbSNP
rs572418601 3678 dbSNP
rs1208081345 3680 dbSNP
rs987489792 3683 dbSNP
rs926978609 3684 dbSNP
rs1349665941 3685 dbSNP
rs938302133 3688 dbSNP
rs1419094059 3692 dbSNP
rs147282439 3694 dbSNP
rs554550235 3697 dbSNP
rs964820561 3698 dbSNP
rs945761565 3711 dbSNP
rs1361472909 3737 dbSNP
rs771476490 3744 dbSNP
rs187747066 3752 dbSNP
rs1410251196 3757 dbSNP
rs930812217 3759 dbSNP
rs1473068023 3760 dbSNP
rs1162750179 3761 dbSNP
rs1390515016 3766 dbSNP
rs1484269162 3767 dbSNP
rs1256602246 3768 dbSNP
rs1210766763 3778 dbSNP
rs1328329974 3794 dbSNP
rs1266068879 3795 dbSNP
rs1229969929 3799 dbSNP
rs368994980 3804 dbSNP
rs1435572524 3807 dbSNP
rs1287865556 3808 dbSNP
rs1393877641 3809 dbSNP
rs1047947882 3822 dbSNP
rs1359433034 3822 dbSNP
rs1435037314 3834 dbSNP
rs9998860 3834 dbSNP
rs1006816216 3835 dbSNP
rs1368172183 3839 dbSNP
rs1162963599 3840 dbSNP
rs1046076358 3851 dbSNP
rs906285771 3853 dbSNP
rs1187980744 3858 dbSNP
rs746290242 3860 dbSNP
rs770122481 3869 dbSNP
rs1246112580 3874 dbSNP
rs1210424174 3877 dbSNP
rs1486081911 3879 dbSNP
rs1055286090 3893 dbSNP
rs563401101 3893 dbSNP
rs1323093274 3912 dbSNP
rs200653511 3914 dbSNP
rs201215786 3915 dbSNP
rs1226984473 3926 dbSNP
rs901193098 3931 dbSNP
rs1331605539 3940 dbSNP
rs1011172221 3957 dbSNP
rs1292100349 3963 dbSNP
rs1216968315 3970 dbSNP
rs998114141 3971 dbSNP
rs1241962846 3972 dbSNP
rs1447715706 3973 dbSNP
rs1392036542 3974 dbSNP
rs1190434780 3976 dbSNP
rs1447466228 3976 dbSNP
rs1266440178 3978 dbSNP
rs1207824348 3989 dbSNP
rs1489282927 3991 dbSNP
rs1485006044 3998 dbSNP
rs1025580594 4000 dbSNP
rs532319433 4007 dbSNP
rs1339468182 4012 dbSNP
rs902456804 4013 dbSNP
rs1228833436 4019 dbSNP
rs1331009176 4023 dbSNP
rs773247230 4024 dbSNP
rs1299692692 4033 dbSNP
rs1388882930 4035 dbSNP
rs1391796476 4043 dbSNP
rs1307669254 4044 dbSNP
rs1427987249 4045 dbSNP
rs546036312 4050 dbSNP
rs1169251953 4057 dbSNP
rs1474938456 4063 dbSNP
rs1196566515 4074 dbSNP
rs559646241 4076 dbSNP
rs1269265021 4078 dbSNP
rs1181015395 4086 dbSNP
rs1481845957 4087 dbSNP
rs1276216532 4111 dbSNP
rs1195838328 4115 dbSNP
rs1345006564 4118 dbSNP
rs1254752692 4121 dbSNP
rs1018993973 4124 dbSNP
rs528390126 4126 dbSNP
rs964708337 4133 dbSNP
rs11938873 4134 dbSNP
rs1414108963 4136 dbSNP
rs1346542304 4138 dbSNP
rs769608282 4142 dbSNP
rs775690961 4143 dbSNP
rs1017109629 4144 dbSNP
rs762911448 4144 dbSNP
rs1401006051 4154 dbSNP
rs35002634 4164 dbSNP
rs762697625 4177 dbSNP
rs764120858 4179 dbSNP
rs1308760632 4189 dbSNP
rs1413977028 4198 dbSNP
rs773924148 4207 dbSNP
rs981063282 4208 dbSNP
rs1170759223 4211 dbSNP
rs1395273355 4213 dbSNP
rs1313146464 4223 dbSNP
rs928175413 4240 dbSNP
rs1354219199 4241 dbSNP
rs1412401734 4245 dbSNP
rs1291908016 4250 dbSNP
rs1181127847 4255 dbSNP
rs1429776132 4255 dbSNP
rs1471428825 4260 dbSNP
rs532467436 4261 dbSNP
rs1253517082 4263 dbSNP
rs1352866902 4263 dbSNP
rs952223186 4267 dbSNP
rs1224879371 4269 dbSNP
rs939568767 4269 dbSNP
rs548232601 4270 dbSNP
rs1267952992 4283 dbSNP
rs912901897 4288 dbSNP
rs751802991 4293 dbSNP
rs1226912408 4298 dbSNP
rs1280348112 4300 dbSNP
rs1331583247 4300 dbSNP
rs945815361 4305 dbSNP
rs1338782303 4309 dbSNP
rs1043168031 4310 dbSNP
rs544481260 4316 dbSNP
rs865888475 4318 dbSNP
rs1315546144 4333 dbSNP
rs1212454761 4338 dbSNP
rs567640698 4344 dbSNP
rs942505039 4353 dbSNP
rs1039638412 4355 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gacaccccuGUCUUCCUCCCu 5'
                   | | ||||||| 
Target 5' ------auuCUGUAGGAGGGu 3'
 		1 - 15
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 3093.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000261427.5 | 3UTR | AUUCUGUAGGAGGGUCUAUUCUGAGCCGUUAACUUCCUGUAAGGGGAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000261427.5 | 3UTR | AUUCUGUAGGAGGGUCUAUUCUGAGCCGUUAACUUCCUGUAAGGGGAAAAUGGGUGGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
236 hsa-miR-4667-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT256051 UBE2K ubiquitin conjugating enzyme E2 K 2 4
MIRT306046 SKIL SKI like proto-oncogene 2 10
MIRT348290 ZBTB7A zinc finger and BTB domain containing 7A 2 2
MIRT380488 AREL1 apoptosis resistant E3 ubiquitin protein ligase 1 2 2
MIRT441955 MAGEB10 MAGE family member B10 2 6
MIRT447735 MOCOS molybdenum cofactor sulfurase 2 2
MIRT449260 PALM2 paralemmin 2 2 4
MIRT456108 VAV3 vav guanine nucleotide exchange factor 3 2 8
MIRT471140 PHF19 PHD finger protein 19 2 4
MIRT486256 BCORL1 BCL6 corepressor like 1 2 2
MIRT489562 PLD6 phospholipase D family member 6 2 2
MIRT489898 PPIC peptidylprolyl isomerase C 2 4
MIRT497434 SEC63 SEC63 homolog, protein translocation regulator 2 4
MIRT499611 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 8
MIRT506401 NSD1 nuclear receptor binding SET domain protein 1 2 8
MIRT513021 NSFL1C NSFL1 cofactor 2 6
MIRT513044 BRIX1 BRX1, biogenesis of ribosomes 2 2
MIRT526173 ANKRD65 ankyrin repeat domain 65 2 2
MIRT527820 TMEM74B transmembrane protein 74B 2 2
MIRT528177 C6orf47 chromosome 6 open reading frame 47 2 2
MIRT530306 TNFRSF10D TNF receptor superfamily member 10d 2 2
MIRT531943 AACS acetoacetyl-CoA synthetase 2 2
MIRT531987 SLCO1B3 solute carrier organic anion transporter family member 1B3 2 2
MIRT534821 RAB30 RAB30, member RAS oncogene family 2 2
MIRT536153 MAP4K5 mitogen-activated protein kinase kinase kinase kinase 5 2 2
MIRT540297 TMA16 translation machinery associated 16 homolog 2 2
MIRT543485 RXRA retinoid X receptor alpha 2 2
MIRT547506 MAZ MYC associated zinc finger protein 2 2
MIRT569289 SLC35C2 solute carrier family 35 member C2 2 2
MIRT572754 FAM204A family with sequence similarity 204 member A 2 2
MIRT575266 Timp3 tissue inhibitor of metalloproteinase 3 2 2
MIRT609477 LSAMP limbic system-associated membrane protein 2 2
MIRT610265 LRRC47 leucine rich repeat containing 47 2 2
MIRT610350 AGTRAP angiotensin II receptor associated protein 2 2
MIRT610396 FOXE1 forkhead box E1 2 2
MIRT610492 GPC4 glypican 4 2 4
MIRT612511 SH3PXD2A SH3 and PX domains 2A 2 2
MIRT612760 MYOCD myocardin 2 2
MIRT613414 CDH8 cadherin 8 2 2
MIRT613703 QPRT quinolinate phosphoribosyltransferase 2 2
MIRT613814 ATP6AP1L ATPase H+ transporting accessory protein 1 like 2 2
MIRT614170 MYO1F myosin IF 2 2
MIRT614214 LENG9 leukocyte receptor cluster member 9 2 2
MIRT614225 TSKU tsukushi, small leucine rich proteoglycan 2 2
MIRT614497 RHOB ras homolog family member B 2 2
MIRT614986 GIPC1 GIPC PDZ domain containing family member 1 2 2
MIRT615222 ARSE arylsulfatase E (chondrodysplasia punctata 1) 2 2
MIRT615326 ERN1 endoplasmic reticulum to nucleus signaling 1 2 2
MIRT615494 SHB SH2 domain containing adaptor protein B 2 2
MIRT615506 CNNM3 cyclin and CBS domain divalent metal cation transport mediator 3 2 2
MIRT615536 PHF1 PHD finger protein 1 2 2
MIRT615550 TNFSF15 TNF superfamily member 15 2 2
MIRT615954 SORD sorbitol dehydrogenase 2 2
MIRT616478 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT616667 ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 2 2
MIRT616742 DCTN5 dynactin subunit 5 2 2
MIRT616760 SVOP SV2 related protein 2 2
MIRT616913 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT617645 RAB43 RAB43, member RAS oncogene family 2 2
MIRT617822 EMX2 empty spiracles homeobox 2 2 2
MIRT618468 GPR55 G protein-coupled receptor 55 2 2
MIRT618517 SELPLG selectin P ligand 2 2
MIRT618687 DVL1 dishevelled segment polarity protein 1 2 2
MIRT619464 XRCC2 X-ray repair cross complementing 2 2 2
MIRT619560 GABRG2 gamma-aminobutyric acid type A receptor gamma2 subunit 2 2
MIRT620004 C1orf64 steroid receptor associated and regulated protein 2 2
MIRT620210 VN1R1 vomeronasal 1 receptor 1 2 2
MIRT620446 SEMA3E semaphorin 3E 2 2
MIRT621297 SLC35B1 solute carrier family 35 member B1 2 2
MIRT621765 TNFAIP3 TNF alpha induced protein 3 2 2
MIRT621812 TMEM170B transmembrane protein 170B 2 2
MIRT622171 SMYD1 SET and MYND domain containing 1 2 2
MIRT622202 SLC5A12 solute carrier family 5 member 12 2 2
MIRT622295 SH3BP5L SH3 binding domain protein 5 like 2 2
MIRT622718 PLEKHA2 pleckstrin homology domain containing A2 2 2
MIRT622893 PDCL phosducin like 2 2
MIRT623215 MTFR1L mitochondrial fission regulator 1 like 2 2
MIRT623230 MON1B MON1 homolog B, secretory trafficking associated 2 2
MIRT623548 KCNJ6 potassium voltage-gated channel subfamily J member 6 2 2
MIRT623557 JPH3 junctophilin 3 2 2
MIRT623669 HRK harakiri, BCL2 interacting protein 2 2
MIRT623730 GTDC1 glycosyltransferase like domain containing 1 2 4
MIRT623742 GRIN2B glutamate ionotropic receptor NMDA type subunit 2B 2 2
MIRT623906 FOXK2 forkhead box K2 2 2
MIRT624181 DERL2 derlin 2 2 2
MIRT625758 GPC5 glypican 5 2 2
MIRT625975 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT626300 KCNK12 potassium two pore domain channel subfamily K member 12 2 2
MIRT626779 PI4K2B phosphatidylinositol 4-kinase type 2 beta 2 2
MIRT627034 TMEM109 transmembrane protein 109 2 4
MIRT627109 PDRG1 p53 and DNA damage regulated 1 2 2
MIRT627405 TMEM170A transmembrane protein 170A 2 2
MIRT628390 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 2 2
MIRT628428 ARRB1 arrestin beta 1 2 2
MIRT629824 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT630870 UBXN11 UBX domain protein 11 2 2
MIRT630968 KIAA2022 neurite extension and migration factor 2 2
MIRT631588 ITGAL integrin subunit alpha L 2 2
MIRT633209 WFDC6 WAP four-disulfide core domain 6 2 2
MIRT635310 FAM179A TOG array regulator of axonemal microtubules 2 2 2
MIRT637062 PRKAG1 protein kinase AMP-activated non-catalytic subunit gamma 1 2 2
MIRT637116 KLHL21 kelch like family member 21 2 2
MIRT637635 ZNF431 zinc finger protein 431 2 2
MIRT638390 RAB11FIP1 RAB11 family interacting protein 1 2 2
MIRT639178 CEP70 centrosomal protein 70 2 2
MIRT639777 GPR45 G protein-coupled receptor 45 2 2
MIRT639885 STC1 stanniocalcin 1 2 2
MIRT640003 PHF21B PHD finger protein 21B 2 2
MIRT640640 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT640824 GPR107 G protein-coupled receptor 107 2 2
MIRT641253 CENPN centromere protein N 2 2
MIRT641434 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT641746 MACROD2 MACRO domain containing 2 2 2
MIRT641869 STOML1 stomatin like 1 2 2
MIRT641890 SND1 staphylococcal nuclease and tudor domain containing 1 2 2
MIRT642356 C19orf40 Fanconi anemia core complex associated protein 24 1 1
MIRT644007 PPP1R3G protein phosphatase 1 regulatory subunit 3G 2 2
MIRT644301 ZSCAN29 zinc finger and SCAN domain containing 29 2 2
MIRT645706 C1orf50 chromosome 1 open reading frame 50 2 2
MIRT645752 FAM213A family with sequence similarity 213 member A 2 2
MIRT646123 SLC26A9 solute carrier family 26 member 9 2 2
MIRT646397 SLC22A6 solute carrier family 22 member 6 2 2
MIRT646490 APBB3 amyloid beta precursor protein binding family B member 3 2 2
MIRT646576 XPNPEP3 X-prolyl aminopeptidase 3 2 2
MIRT647151 CYP27C1 cytochrome P450 family 27 subfamily C member 1 2 2
MIRT647554 CYP2B6 cytochrome P450 family 2 subfamily B member 6 2 2
MIRT647761 RNF168 ring finger protein 168 2 2
MIRT648078 ZMIZ2 zinc finger MIZ-type containing 2 2 2
MIRT648644 ZNF562 zinc finger protein 562 2 2
MIRT648967 TMEM45B transmembrane protein 45B 2 2
MIRT649126 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT649556 FAM20B FAM20B, glycosaminoglycan xylosylkinase 2 2
MIRT649644 SAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 2 2
MIRT649781 MRPS27 mitochondrial ribosomal protein S27 2 4
MIRT649945 SIT1 signaling threshold regulating transmembrane adaptor 1 2 2
MIRT649975 TRAFD1 TRAF-type zinc finger domain containing 1 2 2
MIRT650250 CD68 CD68 molecule 2 2
MIRT650717 KRT32 keratin 32 2 2
MIRT650979 ZNF831 zinc finger protein 831 2 2
MIRT651049 ZNF644 zinc finger protein 644 2 2
MIRT651120 ZNF48 zinc finger protein 48 2 2
MIRT651221 ZNF225 zinc finger protein 225 2 2
MIRT651277 ZDHHC5 zinc finger DHHC-type containing 5 2 2
MIRT651401 ZBTB16 zinc finger and BTB domain containing 16 2 2
MIRT651410 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT652198 TRIM39 tripartite motif containing 39 2 2
MIRT652710 THBS2 thrombospondin 2 2 4
MIRT652763 TENM4 teneurin transmembrane protein 4 2 2
MIRT653031 STX1B syntaxin 1B 2 2
MIRT653099 SRSF7 serine and arginine rich splicing factor 7 2 2
MIRT653354 SMG7 SMG7, nonsense mediated mRNA decay factor 2 2
MIRT653366 SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 2 2
MIRT653755 SLC12A5 solute carrier family 12 member 5 2 2
MIRT653864 SHANK2 SH3 and multiple ankyrin repeat domains 2 2 2
MIRT653961 SEPN1 selenoprotein N 2 2
MIRT654463 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT654483 RANBP2 RAN binding protein 2 2 2
MIRT654696 PSMB5 proteasome subunit beta 5 2 2
MIRT655075 PIP4K2B phosphatidylinositol-5-phosphate 4-kinase type 2 beta 2 2
MIRT655443 PALM2-AKAP2 PALM2-AKAP2 readthrough 2 2
MIRT655606 ORMDL3 ORMDL sphingolipid biosynthesis regulator 3 2 2
MIRT656026 MYO5A myosin VA 2 4
MIRT656038 MYO10 myosin X 2 2
MIRT656304 METTL1 methyltransferase like 1 2 2
MIRT656372 MDFI MyoD family inhibitor 2 4
MIRT656399 MCU mitochondrial calcium uniporter 2 2
MIRT656415 MCTP1 multiple C2 and transmembrane domain containing 1 2 2
MIRT656762 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT656905 KIAA1958 KIAA1958 2 2
MIRT658938 DPY19L1 dpy-19 like C-mannosyltransferase 1 2 2
MIRT659221 CXXC5 CXXC finger protein 5 2 2
MIRT659281 CTIF cap binding complex dependent translation initiation factor 2 2
MIRT659483 CLDN1 claudin 1 2 2
MIRT660112 BTBD3 BTB domain containing 3 2 2
MIRT660305 BHLHE40 basic helix-loop-helix family member e40 2 2
MIRT660334 BCL11B B-cell CLL/lymphoma 11B 2 2
MIRT660788 AKAP2 A-kinase anchoring protein 2 2 2
MIRT661578 EPHX2 epoxide hydrolase 2 2 2
MIRT661744 DTHD1 death domain containing 1 2 2
MIRT661873 PDLIM5 PDZ and LIM domain 5 2 2
MIRT662256 C15orf52 chromosome 15 open reading frame 52 2 2
MIRT662698 SPIRE2 spire type actin nucleation factor 2 2 2
MIRT662761 LRRC3C leucine rich repeat containing 3C 2 2
MIRT663315 TECPR2 tectonin beta-propeller repeat containing 2 2 2
MIRT664687 EIF2B2 eukaryotic translation initiation factor 2B subunit beta 2 4
MIRT665966 SZRD1 SUZ RNA binding domain containing 1 2 2
MIRT666057 STK40 serine/threonine kinase 40 2 2
MIRT666875 POMGNT1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) 2 2
MIRT667214 NIPAL1 NIPA like domain containing 1 2 2
MIRT667285 NAV1 neuron navigator 1 2 2
MIRT667648 LGALSL galectin like 2 2
MIRT668045 GTPBP10 GTP binding protein 10 2 2
MIRT668155 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT668492 ETV3 ETS variant 3 2 2
MIRT669356 BHLHE22 basic helix-loop-helix family member e22 2 2
MIRT676486 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 2
MIRT684285 CDK9 cyclin dependent kinase 9 2 2
MIRT686689 TIMM10 translocase of inner mitochondrial membrane 10 2 2
MIRT691270 GET4 golgi to ER traffic protein 4 2 2
MIRT698669 TEF TEF, PAR bZIP transcription factor 2 2
MIRT699893 RUNX1 runt related transcription factor 1 2 2
MIRT702635 ITGA5 integrin subunit alpha 5 2 2
MIRT708797 KIFC3 kinesin family member C3 2 2
MIRT710950 AMZ1 archaelysin family metallopeptidase 1 2 2
MIRT711228 RETSAT retinol saturase 2 2
MIRT711637 PEBP1 phosphatidylethanolamine binding protein 1 2 2
MIRT711968 APOA5 apolipoprotein A5 2 2
MIRT712078 WDR37 WD repeat domain 37 2 2
MIRT712542 CYB561D1 cytochrome b561 family member D1 2 2
MIRT713595 ANKMY1 ankyrin repeat and MYND domain containing 1 2 2
MIRT713715 PAOX polyamine oxidase 2 2
MIRT714482 TBL2 transducin beta like 2 2 2
MIRT715510 MAPKBP1 mitogen-activated protein kinase binding protein 1 2 2
MIRT715833 SZT2 SZT2, KICSTOR complex subunit 2 2
MIRT715931 CHD4 chromodomain helicase DNA binding protein 4 2 2
MIRT716183 MTRNR2L1 MT-RNR2-like 1 2 2
MIRT716330 POU5F1 POU class 5 homeobox 1 2 2
MIRT716942 CACNB1 calcium voltage-gated channel auxiliary subunit beta 1 2 2
MIRT717337 URM1 ubiquitin related modifier 1 2 2
MIRT718114 CRTC1 CREB regulated transcription coactivator 1 2 2
MIRT718866 LRSAM1 leucine rich repeat and sterile alpha motif containing 1 2 2
MIRT719456 APBA1 amyloid beta precursor protein binding family A member 1 2 2
MIRT719989 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT720262 FAM83F family with sequence similarity 83 member F 2 2
MIRT721361 ENTHD1 ENTH domain containing 1 2 2
MIRT721370 SEC14L6 SEC14 like lipid binding 6 2 2
MIRT721489 LTB4R2 leukotriene B4 receptor 2 2 2
MIRT723010 FADS1 fatty acid desaturase 1 2 2
MIRT723608 FKRP fukutin related protein 2 2
MIRT723686 CIRH1A UTP4, small subunit processome component 2 2
MIRT723972 GPR146 G protein-coupled receptor 146 2 2
MIRT724826 HOXB8 homeobox B8 2 2
MIRT725283 OSTM1 osteopetrosis associated transmembrane protein 1 2 2
MIRT725437 HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 2 2
MIRT725606 CAPN6 calpain 6 2 2
MIRT731686 BTK Bruton tyrosine kinase 3 1
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4667 Cisplatin 5460033 NSC119875 approved sensitive cell line (CIS)
hsa-mir-4667 Androstenedione 6128 NSC9563 resistant cell line (MCF-7)
hsa-mir-4667 Tamoxifen 2733525 NSC180973 approved resistant cell line (MCF7)
hsa-miR-4667-3p Tripterygium wilfordii Hook F sensitive tissue
hsa-miR-4667-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4667-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (CP20)
hsa-miR-4667-3p Platinum 23939 sensitive tissue (non-small cell lung cancer)
hsa-miR-4667-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-4667-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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