miRTarBase - #MIRT265807


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pre-miRNA Information
pre-miRNA hsa-mir-3942   
Genomic Coordinates chr15: 35372256 - 35372364
Description Homo sapiens miR-3942 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3942-3p
Sequence 65| UUUCAGAUAACAGUAUUACAU |85
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 5 15 - 35372296 29233923 MiREDiBase
A-to-I 10 15 - 35372291 23291724, 29233923 MiREDiBase
A-to-I 18 15 - 35372283 23291724, 29233923 MiREDiBase
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN1674243 19 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1043666670 6 dbSNP
rs1264147291 18 dbSNP
rs1223363654 20 dbSNP
Putative Targets

Gene Information
Gene Symbol NOTCH2   
Synonyms AGS2, HJCYS, hN2
Description notch 2
Transcript NM_024408   
Expression
Putative miRNA Targets on NOTCH2
3'UTR of NOTCH2
(miRNA target sites are highlighted)		 
>NOTCH2|NM_024408|3'UTR
   1 GAGAGTCCACCTCCAGTGTAGAGACATAACTGACTTTTGTAAATGCTGCTGAGGAACAAATGAAGGTCATCCGGGAGAGA
  81 AATGAAGAAATCTCTGGAGCCAGCTTCTAGAGGTAGGAAAGAGAAGATGTTCTTATTCAGATAATGCAAGAGAAGCAATT
 161 CGTCAGTTTCACTGGGTATCTGCAAGGCTTATTGATTATTCTAATCTAATAAGACAAGTTTGTGGAAATGCAAGATGAAT
 241 ACAAGCCTTGGGTCCATGTTTACTCTCTTCTATTTGGAGAATAAGATGGATGCTTATTGAAGCCCAGACATTCTTGCAGC
 321 TTGGACTGCATTTTAAGCCCTGCAGGCTTCTGCCATATCCATGAGAAGATTCTACACTAGCGTCCTGTTGGGAATTATGC
 401 CCTGGAATTCTGCCTGAATTGACCTACGCATCTCCTCCTCCTTGGACATTCTTTTGTCTTCATTTGGTGCTTTTGGTTTT
 481 GCACCTCTCCGTGATTGTAGCCCTACCAGCATGTTATAGGGCAAGACCTTTGTGCTTTTGATCATTCTGGCCCATGAAAG
 561 CAACTTTGGTCTCCTTTCCCCTCCTGTCTTCCCGGTATCCCTTGGAGTCTCACAAGGTTTACTTTGGTATGGTTCTCAGC
 641 ACAAACCTTTCAAGTATGTTGTTTCTTTGGAAAATGGACATACTGTATTGTGTTCTCCTGCATATATCATTCCTGGAGAG
 721 AGAAGGGGAGAAGAATACTTTTCTTCAACAAATTTTGGGGGCAGGAGATCCCTTCAAGAGGCTGCACCTTAATTTTTCTT
 801 GTCTGTGTGCAGGTCTTCATATAAACTTTACCAGGAAGAAGGGTGTGAGTTTGTTGTTTTTCTGTGTATGGGCCTGGTCA
 881 GTGTAAAGTTTTATCCTTGATAGTCTAGTTACTATGACCCTCCCCACTTTTTTAAAACCAGAAAAAGGTTTGGAATGTTG
 961 GAATGACCAAGAGACAAGTTAACTCGTGCAAGAGCCAGTTACCCACCCACAGGTCCCCCTACTTCCTGCCAAGCATTCCA
1041 TTGACTGCCTGTATGGAACACATTTGTCCCAGATCTGAGCATTCTAGGCCTGTTTCACTCACTCACCCAGCATATGAAAC
1121 TAGTCTTAACTGTTGAGCCTTTCCTTTCATATCCACAGAAGACACTGTCTCAAATGTTGTACCCTTGCCATTTAGGACTG
1201 AACTTTCCTTAGCCCAAGGGACCCAGTGACAGTTGTCTTCCGTTTGTCAGATGATCAGTCTCTACTGATTATCTTGCTGC
1281 TTAAAGGCCTGCTCACCAATCTTTCTTTCACACCGTGTGGTCCGTGTTACTGGTATACCCAGTATGTTCTCACTGAAGAC
1361 ATGGACTTTATATGTTCAAGTGCAGGAATTGGAAAGTTGGACTTGTTTTCTATGATCCAAAACAGCCCTATAAGAAGGTT
1441 GGAAAAGGAGGAACTATATAGCAGCCTTTGCTATTTTCTGCTACCATTTCTTTTCCTCTGAAGCGGCCATGACATTCCCT
1521 TTGGCAACTAACGTAGAAACTCAACAGAACATTTTCCTTTCCTAGAGTCACCTTTTAGATGATAATGGACAACTATAGAC
1601 TTGCTCATTGTTCAGACTGATTGCCCCTCACCTGAATCCACTCTCTGTATTCATGCTCTTGGCAATTTCTTTGACTTTCT
1681 TTTAAGGGCAGAAGCATTTTAGTTAATTGTAGATAAAGAATAGTTTTCTTCCTCTTCTCCTTGGGCCAGTTAATAATTGG
1761 TCCATGGCTACACTGCAACTTCCGTCCAGTGCTGTGATGCCCATGACACCTGCAAAATAAGTTCTGCCTGGGCATTTTGT
1841 AGATATTAACAGGTGAATTCCCGACTCTTTTGGTTTGAATGACAGTTCTCATTCCTTCTATGGCTGCAAGTATGCATCAG
1921 TGCTTCCCACTTACCTGATTTGTCTGTCGGTGGCCCCATATGGAAACCCTGCGTGTCTGTTGGCATAATAGTTTACAAAT
2001 GGTTTTTTCAGTCCTATCCAAATTTATTGAACCAACAAAAATAATTACTTCTGCCCTGAGATAAGCAGATTAAGTTTGTT
2081 CATTCTCTGCTTTATTCTCTCCATGTGGCAACATTCTGTCAGCCTCTTTCATAGTGTGCAAACATTTTATCATTCTAAAT
2161 GGTGACTCTCTGCCCTTGGACCCATTTATTATTCACAGATGGGGAGAACCTATCTGCATGGACCTCTGTGGACCACAGCG
2241 TACCTGCCCCTTTCTGCCCTCCTGCTCCAGCCCCACTTCTGAAAGTATCAGCTACTGATCCAGCCACTGGATATTTTATA
2321 TCCTCCCTTTTCCTTAAGCACAATGTCAGACCAAATTGCTTGTTTCTTTTTCTTGGACTACTTTAATTTGGATCCTTTGG
2401 GTTTGGAGAAAGGGAATGTGAAAGCTGTCATTACAGACAACAGGTTTCAGTGATGAGGAGGACAACACTGCCTTTCAAAC
2481 TTTTTACTGATCTCTTAGATTTTAAGAACTCTTGAATTGTGTGGTATCTAATAAAAGGGAAGGTAAGATGGATAATCACT
2561 TTCTCATTTGGGTTCTGAATTGGAGACTCAGTTTTTATGAGACACATCTTTTATGCCATGTATAGATCCTCCCCTGCTAT
2641 TTTTGGTTTATTTTTATTGTTATAAATGCTTTCTTTCTTTGACTCCTCTTCTGCCTGCCTTTGGGGATAGGTTTTTTTGT
2721 TTGTTTATTTGCTTCCTCTGTTTTGTTTTAAGCATCATTTTCTTATGTGAGGTGGGGAAGGGAAAGGTATGAGGGAAAGA
2801 GAGTCTGAGAATTAAAATATTTTAGTATAAGCAATTGGCTGTGATGCTCAAATCCATTGCATCCTCTTATTGAATTTGCC
2881 AATTTGTAATTTTTGCATAATAAAGAACCAAAGGTGTAATGTTTTGTTGAGAGGTGGTTTAGGGATTTTGGCCCTAACCA
2961 ATACATTGAATGTATGATGACTATTTGGGAGGACACATTTATGTACCCAGAGGCCCCCACTAATAAGTGGTACTATGGTT
3041 ACTTCCTTGTGTACATTTCTCTTAAAAGTGATATTATATCTGTTTGTATGAGAAACCCAGTAACCAATAAAATGACCGCA
3121 TATTCCTGACTAAACGTAGTAAGGAAAATGCACACTTTGTTTTTACTTTTCCGTTTCATTCTAAAGGTAGTTAAGATGAA
3201 ATTTATATGAAAGCATTTTTATCACAAAATAAAAAAGGTTTGCCAAGCTCAGTGGTGTTGTATTTTTTATTTTCCAATAC
3281 TGCATCCATGGCCTGGCAGTGTTACCTCATGATGTCATAATTTGCTGAGAGAGCAAATTTTCTTTTCTTTCTGAATCCCA
3361 CAAAGCCTAGCACCAAACTTCTTTTTTTCTTCCTTTAATTAGATCATAAATAAATGATCCTGGGGAAAAAGCATCTGTCA
3441 AATAGGAAACATCACAAAACTGAGCACTCTTCTGTGCACTAGCCATAGCTGGTGACAAACAGATGGTTGCTCAGGGACAA
3521 GGTGCCTTCCAATGGAAATGCGAAGTAGTTGCTATAGCAAGAATTGGGAACTGGGATATAAGTCATAATATTAATTATGC
3601 TGTTATGTAAATGATTGGTTTGTAACATTCCTTAAGTGAAATTTGTGTAGAACTTAATATACAGGATTATAAAATAATAT
3681 TTTGTGTATAAATTTGTTATAAGTTCACATTCATACATTTATTTATAAAGTCAGTGAGATATTTGAACATGAAAAAAAAA
3761 A
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uaCAUUAUGACAAUAGACUUu 5'
            | | |||| | ||:||:| 
Target 5' ttGGACTACTTTAATTTGGAt 3'
 2373 - 2393 131.00 -5.10
2 
miRNA  3' uaCAUUAUG---ACA----AUAGACUUu 5'
            | || ||   |||     ||||||: 
Target 5' atGGAACACATTTGTCCCAGATCTGAGc 3'
 1053 - 1080 129.00 -9.10
3 
miRNA  3' uaCAUUAUGACAAUAGACuuu 5'
            ||:|||:|  ||||||   
Target 5' aaGTGATATT-ATATCTGttt 3'
 3066 - 3085 126.00 -11.12
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30486287 43 COSMIC
COSN30538151 48 COSMIC
COSN26671719 49 COSMIC
COSN30501788 62 COSMIC
COSN30158012 68 COSMIC
COSN509713 77 COSMIC
COSN30115203 161 COSMIC
COSN9361899 253 COSMIC
COSN5353951 516 COSMIC
COSN26767782 662 COSMIC
COSN6000777 706 COSMIC
COSN8318789 1189 COSMIC
COSN20095281 1532 COSMIC
COSN29449577 1603 COSMIC
COSN26521637 1606 COSMIC
COSN9361898 1998 COSMIC
COSN21355699 2002 COSMIC
COSN29058953 2296 COSMIC
COSN28802013 2343 COSMIC
COSN29199761 2463 COSMIC
COSN28802012 2488 COSMIC
COSN21977331 2681 COSMIC
COSN31521809 3227 COSMIC
COSN29836994 3324 COSMIC
COSN29166292 3370 COSMIC
COSN21455705 3416 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1191182245 5 dbSNP
rs772513585 10 dbSNP
rs746381696 11 dbSNP
rs1211164681 13 dbSNP
rs747980346 14 dbSNP
rs996996000 23 dbSNP
rs1264557409 31 dbSNP
rs779291005 37 dbSNP
rs749100262 39 dbSNP
rs747645276 43 dbSNP
rs1280514860 46 dbSNP
rs1398498978 50 dbSNP
rs972179975 68 dbSNP
rs1000139830 72 dbSNP
rs903080866 73 dbSNP
rs141369184 79 dbSNP
rs587762231 84 dbSNP
rs1006366719 87 dbSNP
rs1393184461 90 dbSNP
rs770133306 92 dbSNP
rs970064245 93 dbSNP
rs587655399 100 dbSNP
rs1197557161 113 dbSNP
rs1490919653 124 dbSNP
rs1369667414 126 dbSNP
rs1292781412 128 dbSNP
rs1204950963 141 dbSNP
rs1325043217 142 dbSNP
rs1306104986 145 dbSNP
rs1331342009 155 dbSNP
rs1014064571 157 dbSNP
rs1300713506 161 dbSNP
rs375690822 162 dbSNP
rs148183813 170 dbSNP
rs369333412 191 dbSNP
rs1276011871 192 dbSNP
rs1480472754 203 dbSNP
rs1215628624 211 dbSNP
rs1194450161 213 dbSNP
rs3902727 220 dbSNP
rs1269715961 222 dbSNP
rs746279126 230 dbSNP
rs1452471356 234 dbSNP
rs1339488234 235 dbSNP
rs1251267970 236 dbSNP
rs1451437295 245 dbSNP
rs895517718 248 dbSNP
rs1402536290 254 dbSNP
rs1372438792 256 dbSNP
rs1347078459 267 dbSNP
rs1460229149 272 dbSNP
rs1164842785 276 dbSNP
rs1390996797 290 dbSNP
rs1056601934 294 dbSNP
rs587726066 303 dbSNP
rs1441265935 305 dbSNP
rs1366690814 313 dbSNP
rs938087348 323 dbSNP
rs926674235 324 dbSNP
rs201330613 336 dbSNP
rs1410408445 339 dbSNP
rs369734036 341 dbSNP
rs1174452581 344 dbSNP
rs1042888286 354 dbSNP
rs191322273 355 dbSNP
rs1481442082 371 dbSNP
rs1038759531 373 dbSNP
rs587600125 374 dbSNP
rs1466259534 377 dbSNP
rs1189315342 381 dbSNP
rs1269936133 382 dbSNP
rs587722611 387 dbSNP
rs1176788576 397 dbSNP
rs941633627 398 dbSNP
rs1460754826 400 dbSNP
rs186025859 401 dbSNP
rs1390400821 414 dbSNP
rs1205847858 416 dbSNP
rs1442404690 423 dbSNP
rs587611186 424 dbSNP
rs982915608 427 dbSNP
rs1361828263 428 dbSNP
rs7527186 428 dbSNP
rs774153845 429 dbSNP
rs933228469 438 dbSNP
rs1341408604 443 dbSNP
rs751873668 447 dbSNP
rs41277622 448 dbSNP
rs758562362 454 dbSNP
rs1331569835 458 dbSNP
rs1209437090 464 dbSNP
rs1283551308 474 dbSNP
rs1222808557 484 dbSNP
rs1260260029 487 dbSNP
rs41277620 491 dbSNP
rs1202063855 493 dbSNP
rs1032696039 496 dbSNP
rs1000242020 503 dbSNP
rs967297797 505 dbSNP
rs1474724086 506 dbSNP
rs1299729165 511 dbSNP
rs1020176163 513 dbSNP
rs746267200 517 dbSNP
rs962136032 519 dbSNP
rs1413705565 527 dbSNP
rs909274858 528 dbSNP
rs1442660281 533 dbSNP
rs985369641 541 dbSNP
rs969549708 551 dbSNP
rs1467159619 554 dbSNP
rs1305042184 573 dbSNP
rs1014180481 578 dbSNP
rs1405315069 582 dbSNP
rs1024216459 593 dbSNP
rs752648783 594 dbSNP
rs1229298792 598 dbSNP
rs144595186 599 dbSNP
rs1306590781 606 dbSNP
rs895685653 609 dbSNP
rs1471012363 611 dbSNP
rs1315133682 615 dbSNP
rs1430032081 617 dbSNP
rs1056022125 620 dbSNP
rs587668748 627 dbSNP
rs1208419322 632 dbSNP
rs1158666057 633 dbSNP
rs1253765198 635 dbSNP
rs1035331413 646 dbSNP
rs1002317822 647 dbSNP
rs998452592 654 dbSNP
rs1434342746 657 dbSNP
rs905253904 661 dbSNP
rs142378765 671 dbSNP
rs41277618 677 dbSNP
rs1396210826 683 dbSNP
rs908546573 683 dbSNP
rs771509429 697 dbSNP
rs1178202589 700 dbSNP
rs587715179 702 dbSNP
rs587635497 704 dbSNP
rs1443426106 706 dbSNP
rs1444357188 707 dbSNP
rs1371523220 711 dbSNP
rs1241880621 719 dbSNP
rs1047333772 727 dbSNP
rs1221011612 731 dbSNP
rs1233534062 736 dbSNP
rs1206068912 738 dbSNP
rs759342952 739 dbSNP
rs778882081 741 dbSNP
rs17024499 742 dbSNP
rs1276723010 746 dbSNP
rs888991171 747 dbSNP
rs1203579192 749 dbSNP
rs1263143245 751 dbSNP
rs753790791 759 dbSNP
rs1230809235 766 dbSNP
rs1489298515 775 dbSNP
rs1050665105 786 dbSNP
rs1452056719 807 dbSNP
rs747088646 813 dbSNP
rs975961683 819 dbSNP
rs145359192 821 dbSNP
rs766200293 823 dbSNP
rs925661924 825 dbSNP
rs587621043 831 dbSNP
rs587731313 835 dbSNP
rs1352948679 837 dbSNP
rs1438931444 839 dbSNP
rs978456320 845 dbSNP
rs967077054 850 dbSNP
rs1370283008 853 dbSNP
rs1224179016 856 dbSNP
rs1019953804 879 dbSNP
rs1014209918 881 dbSNP
rs1454448738 882 dbSNP
rs1340059173 887 dbSNP
rs760459711 902 dbSNP
rs1270676591 907 dbSNP
rs959927610 911 dbSNP
rs1034206753 912 dbSNP
rs587669717 919 dbSNP
rs1001739781 920 dbSNP
rs948132914 921 dbSNP
rs916779585 937 dbSNP
rs992725091 948 dbSNP
rs1190007796 956 dbSNP
rs960961642 960 dbSNP
rs1288422683 971 dbSNP
rs1476049976 971 dbSNP
rs1417748426 977 dbSNP
rs777772518 980 dbSNP
rs1031173566 985 dbSNP
rs905277962 986 dbSNP
rs1394041229 991 dbSNP
rs1459931215 996 dbSNP
rs1322725260 1003 dbSNP
rs1326924870 1007 dbSNP
rs587620313 1008 dbSNP
rs1017474172 1009 dbSNP
rs1268367047 1009 dbSNP
rs967051074 1012 dbSNP
rs1292278394 1015 dbSNP
rs772909111 1016 dbSNP
rs1332308386 1021 dbSNP
rs1210021254 1027 dbSNP
rs1383729705 1039 dbSNP
rs1284401989 1041 dbSNP
rs1445935204 1047 dbSNP
rs141326588 1049 dbSNP
rs1215646980 1050 dbSNP
rs1185967700 1054 dbSNP
rs771655457 1056 dbSNP
rs1189168303 1060 dbSNP
rs1417412444 1062 dbSNP
rs1474374139 1075 dbSNP
rs887135138 1082 dbSNP
rs1261637403 1085 dbSNP
rs1385704202 1088 dbSNP
rs1185473540 1090 dbSNP
rs1360843413 1091 dbSNP
rs1484595195 1097 dbSNP
rs1262147234 1107 dbSNP
rs1411236592 1109 dbSNP
rs587667294 1112 dbSNP
rs868644071 1116 dbSNP
rs1353152388 1118 dbSNP
rs901391507 1125 dbSNP
rs1229794003 1131 dbSNP
rs1279803069 1138 dbSNP
rs1289256580 1150 dbSNP
rs1349253257 1160 dbSNP
rs1021705197 1165 dbSNP
rs758477802 1169 dbSNP
rs1011347038 1175 dbSNP
rs1039882767 1179 dbSNP
rs942825597 1183 dbSNP
rs926142514 1197 dbSNP
rs888847551 1199 dbSNP
rs1364105100 1206 dbSNP
rs1484908212 1210 dbSNP
rs748304707 1212 dbSNP
rs978955346 1213 dbSNP
rs945766301 1218 dbSNP
rs1289701573 1219 dbSNP
rs587611309 1235 dbSNP
rs992471054 1241 dbSNP
rs371999721 1242 dbSNP
rs1165939078 1245 dbSNP
rs1373351419 1252 dbSNP
rs1411434688 1261 dbSNP
rs1329044954 1265 dbSNP
rs1036249012 1270 dbSNP
rs1439390497 1274 dbSNP
rs1425658761 1287 dbSNP
rs1373059790 1292 dbSNP
rs1034640647 1296 dbSNP
rs980040084 1308 dbSNP
rs780573273 1310 dbSNP
rs1280283101 1311 dbSNP
rs1426255334 1313 dbSNP
rs587707794 1314 dbSNP
rs1319993674 1315 dbSNP
rs963576762 1318 dbSNP
rs1193956423 1323 dbSNP
rs1179719733 1324 dbSNP
rs1490101794 1327 dbSNP
rs1254910850 1330 dbSNP
rs1454785054 1342 dbSNP
rs1172863802 1358 dbSNP
rs1393208885 1361 dbSNP
rs835575 1366 dbSNP
rs948191878 1370 dbSNP
rs916626898 1371 dbSNP
rs1389369246 1373 dbSNP
rs992340840 1374 dbSNP
rs1005613681 1375 dbSNP
rs1371044282 1381 dbSNP
rs887167654 1382 dbSNP
rs1356757085 1386 dbSNP
rs773698861 1389 dbSNP
rs1225102161 1406 dbSNP
rs1309338438 1407 dbSNP
rs587600330 1416 dbSNP
rs978349914 1427 dbSNP
rs1252304429 1432 dbSNP
rs998109671 1439 dbSNP
rs1194254632 1443 dbSNP
rs901430239 1452 dbSNP
rs1040400903 1459 dbSNP
rs942960219 1465 dbSNP
rs914270793 1466 dbSNP
rs191970979 1471 dbSNP
rs1251056917 1486 dbSNP
rs1430281428 1490 dbSNP
rs1193605854 1497 dbSNP
rs1372240052 1498 dbSNP
rs990192076 1504 dbSNP
rs1305166677 1505 dbSNP
rs953175863 1506 dbSNP
rs587668881 1509 dbSNP
rs1029121035 1514 dbSNP
rs997359473 1518 dbSNP
rs904718907 1524 dbSNP
rs1392887163 1527 dbSNP
rs779216906 1532 dbSNP
rs370197782 1534 dbSNP
rs201232848 1537 dbSNP
rs3839009 1537 dbSNP
rs5777419 1537 dbSNP
rs912957683 1542 dbSNP
rs1182400101 1551 dbSNP
rs1396177521 1556 dbSNP
rs992495491 1569 dbSNP
rs1335811993 1571 dbSNP
rs746413301 1579 dbSNP
rs926970390 1581 dbSNP
rs980455250 1583 dbSNP
rs1271405105 1585 dbSNP
rs1004829168 1587 dbSNP
rs766219174 1588 dbSNP
rs1479805329 1591 dbSNP
rs145365809 1593 dbSNP
rs781704415 1595 dbSNP
rs1426462777 1598 dbSNP
rs983217391 1601 dbSNP
rs1049073692 1604 dbSNP
rs1012620741 1606 dbSNP
rs895237432 1607 dbSNP
rs1364984796 1609 dbSNP
rs1056983531 1623 dbSNP
rs1451994009 1624 dbSNP
rs1384945278 1625 dbSNP
rs939433303 1626 dbSNP
rs587660020 1631 dbSNP
rs1249475486 1636 dbSNP
rs1194017059 1637 dbSNP
rs1481609086 1643 dbSNP
rs771477307 1645 dbSNP
rs1232850216 1647 dbSNP
rs1291699701 1654 dbSNP
rs150473813 1658 dbSNP
rs1042520178 1659 dbSNP
rs587681045 1665 dbSNP
rs1484892838 1674 dbSNP
rs1212717311 1680 dbSNP
rs1257903399 1692 dbSNP
rs1025646080 1713 dbSNP
rs998223616 1732 dbSNP
rs1409720893 1737 dbSNP
rs1419139522 1738 dbSNP
rs1157818403 1741 dbSNP
rs1363694584 1746 dbSNP
rs965796187 1750 dbSNP
rs1018265253 1757 dbSNP
rs1376406219 1762 dbSNP
rs1414555958 1765 dbSNP
rs1223037948 1774 dbSNP
rs1375879248 1778 dbSNP
rs989835751 1782 dbSNP
rs151333685 1783 dbSNP
rs747317178 1784 dbSNP
rs1285464837 1785 dbSNP
rs1234157786 1788 dbSNP
rs1346803739 1793 dbSNP
rs187369212 1797 dbSNP
rs1327340757 1800 dbSNP
rs1234251616 1802 dbSNP
rs587700155 1803 dbSNP
rs1393501323 1807 dbSNP
rs1480776531 1824 dbSNP
rs1397882515 1846 dbSNP
rs1176099161 1853 dbSNP
rs1010376214 1862 dbSNP
rs891965982 1863 dbSNP
rs1056935670 1872 dbSNP
rs1396227169 1874 dbSNP
rs938431039 1879 dbSNP
rs144617509 1880 dbSNP
rs1356467713 1881 dbSNP
rs756138363 1888 dbSNP
rs1178147736 1900 dbSNP
rs758650876 1909 dbSNP
rs752843645 1912 dbSNP
rs1044041603 1914 dbSNP
rs1179476924 1916 dbSNP
rs1370240163 1922 dbSNP
rs1217232534 1934 dbSNP
rs941954321 1934 dbSNP
rs1420632919 1935 dbSNP
rs1307880479 1941 dbSNP
rs1012156300 1946 dbSNP
rs1238738288 1948 dbSNP
rs895175295 1949 dbSNP
rs1469373594 1956 dbSNP
rs1193783537 1958 dbSNP
rs1056372570 1966 dbSNP
rs587747106 1972 dbSNP
rs983251747 1973 dbSNP
rs1422038725 1985 dbSNP
rs1202915770 1990 dbSNP
rs34298600 2009 dbSNP
rs856657 2011 dbSNP
rs923102043 2020 dbSNP
rs902576517 2023 dbSNP
rs587627069 2024 dbSNP
rs1463069698 2028 dbSNP
rs1265025104 2029 dbSNP
rs1042551270 2034 dbSNP
rs1434147068 2036 dbSNP
rs1271892377 2046 dbSNP
rs375731657 2060 dbSNP
rs1213789287 2068 dbSNP
rs1275899535 2069 dbSNP
rs946848462 2070 dbSNP
rs976834078 2075 dbSNP
rs915504103 2076 dbSNP
rs965475999 2076 dbSNP
rs1466770119 2078 dbSNP
rs1219919035 2081 dbSNP
rs1201100195 2082 dbSNP
rs1244345687 2085 dbSNP
rs1486387645 2095 dbSNP
rs1050465387 2097 dbSNP
rs1421714649 2099 dbSNP
rs587737236 2104 dbSNP
rs181666932 2108 dbSNP
rs921620826 2114 dbSNP
rs1417202249 2118 dbSNP
rs188874034 2120 dbSNP
rs753783925 2122 dbSNP
rs975735339 2126 dbSNP
rs370678356 2131 dbSNP
rs969386008 2133 dbSNP
rs1429764288 2135 dbSNP
rs1296162648 2149 dbSNP
rs1356955623 2159 dbSNP
rs1233473483 2166 dbSNP
rs1021923242 2167 dbSNP
rs1010483852 2168 dbSNP
rs185583506 2170 dbSNP
rs1057300213 2174 dbSNP
rs1225025861 2179 dbSNP
rs372282568 2181 dbSNP
rs587692864 2188 dbSNP
rs1261415242 2195 dbSNP
rs1486875229 2198 dbSNP
rs587596883 2199 dbSNP
rs1257097098 2201 dbSNP
rs766292015 2202 dbSNP
rs991165109 2212 dbSNP
rs941664824 2218 dbSNP
rs1408588866 2221 dbSNP
rs1400098761 2239 dbSNP
rs908881090 2240 dbSNP
rs368873082 2247 dbSNP
rs1415180027 2248 dbSNP
rs929211843 2249 dbSNP
rs923131539 2250 dbSNP
rs1338403107 2254 dbSNP
rs975919550 2259 dbSNP
rs965860945 2265 dbSNP
rs911277478 2266 dbSNP
rs760478020 2268 dbSNP
rs750401706 2269 dbSNP
rs968739253 2274 dbSNP
rs587660289 2279 dbSNP
rs1020962206 2289 dbSNP
rs1212120711 2291 dbSNP
rs1244891764 2296 dbSNP
rs1278184987 2325 dbSNP
rs765882340 2326 dbSNP
rs1184056116 2332 dbSNP
rs835576 2343 dbSNP
rs956250543 2344 dbSNP
rs761327061 2345 dbSNP
rs587708814 2347 dbSNP
rs1176631389 2348 dbSNP
rs774036534 2351 dbSNP
rs932927473 2354 dbSNP
rs587647324 2366 dbSNP
rs587755398 2371 dbSNP
rs901398721 2374 dbSNP
rs1399576804 2388 dbSNP
rs1411247775 2393 dbSNP
rs1354868505 2402 dbSNP
rs587701957 2403 dbSNP
rs1040082553 2412 dbSNP
rs140753774 2417 dbSNP
rs1003008560 2425 dbSNP
rs1244219799 2427 dbSNP
rs944319039 2430 dbSNP
rs1373917213 2434 dbSNP
rs1235444555 2440 dbSNP
rs1255824962 2445 dbSNP
rs1343343976 2453 dbSNP
rs181266527 2454 dbSNP
rs905610806 2458 dbSNP
rs1022753413 2459 dbSNP
rs1285268048 2463 dbSNP
rs907528212 2477 dbSNP
rs1325314138 2486 dbSNP
rs777224640 2487 dbSNP
rs699780 2488 dbSNP
rs1401401249 2489 dbSNP
rs930390191 2491 dbSNP
rs1375679256 2499 dbSNP
rs1476273222 2505 dbSNP
rs1360756777 2513 dbSNP
rs920452138 2517 dbSNP
rs587636027 2523 dbSNP
rs1162773025 2529 dbSNP
rs959569991 2531 dbSNP
rs887473647 2539 dbSNP
rs1397299482 2540 dbSNP
rs1422484640 2540 dbSNP
rs1047368034 2542 dbSNP
rs587732479 2551 dbSNP
rs929246021 2555 dbSNP
rs1301226154 2559 dbSNP
rs587682050 2565 dbSNP
rs587618936 2569 dbSNP
rs943179763 2570 dbSNP
rs1270981602 2580 dbSNP
rs751906232 2583 dbSNP
rs3795664 2589 dbSNP
rs1195613138 2592 dbSNP
rs966716311 2602 dbSNP
rs1488772834 2604 dbSNP
rs1468988520 2608 dbSNP
rs587693104 2615 dbSNP
rs699779 2619 dbSNP
rs1448506587 2620 dbSNP
rs893880168 2622 dbSNP
rs1362010739 2631 dbSNP
rs1422435506 2633 dbSNP
rs1476664502 2635 dbSNP
rs1291263292 2639 dbSNP
rs1166677010 2645 dbSNP
rs114161783 2647 dbSNP
rs189691114 2656 dbSNP
rs1293401088 2660 dbSNP
rs956283351 2667 dbSNP
rs1267961683 2670 dbSNP
rs587598780 2672 dbSNP
rs1384239542 2683 dbSNP
rs982096991 2685 dbSNP
rs1041352941 2690 dbSNP
rs1340789150 2693 dbSNP
rs1295351141 2695 dbSNP
rs1335485516 2707 dbSNP
rs1302125889 2708 dbSNP
rs1263606374 2709 dbSNP
rs1352799856 2713 dbSNP
rs1205484714 2718 dbSNP
rs587653250 2719 dbSNP
rs1487206123 2739 dbSNP
rs940251593 2744 dbSNP
rs1324127494 2757 dbSNP
rs1257805427 2765 dbSNP
rs970287437 2766 dbSNP
rs771212466 2771 dbSNP
rs930402866 2776 dbSNP
rs920333951 2780 dbSNP
rs1172994414 2785 dbSNP
rs1159815711 2787 dbSNP
rs1023542912 2791 dbSNP
rs1398554199 2794 dbSNP
rs1314990787 2796 dbSNP
rs1356413603 2804 dbSNP
rs1395495745 2804 dbSNP
rs937823747 2809 dbSNP
rs1428916047 2811 dbSNP
rs927794840 2812 dbSNP
rs1005950658 2825 dbSNP
rs1043964 2834 dbSNP
rs1490944836 2846 dbSNP
rs1025952035 2856 dbSNP
rs761605379 2863 dbSNP
rs1280554710 2870 dbSNP
rs1179776080 2878 dbSNP
rs993091907 2882 dbSNP
rs1419156596 2888 dbSNP
rs1179745817 2895 dbSNP
rs901772977 2898 dbSNP
rs1418249190 2910 dbSNP
rs1175963510 2912 dbSNP
rs147682568 2918 dbSNP
rs1359942449 2921 dbSNP
rs370386282 2935 dbSNP
rs1465689943 2963 dbSNP
rs184363885 2974 dbSNP
rs958383545 2978 dbSNP
rs1447631956 2979 dbSNP
rs943266875 2983 dbSNP
rs1374666113 2996 dbSNP
rs1236188869 3003 dbSNP
rs1421108948 3006 dbSNP
rs1028371055 3007 dbSNP
rs1275688949 3013 dbSNP
rs879916891 3018 dbSNP
rs1207501487 3020 dbSNP
rs1252713941 3025 dbSNP
rs11538714 3033 dbSNP
rs1480664925 3035 dbSNP
rs375889050 3038 dbSNP
rs1282274108 3043 dbSNP
rs145452236 3053 dbSNP
rs1043924453 3061 dbSNP
rs1369477173 3073 dbSNP
rs947462988 3076 dbSNP
rs1174154196 3078 dbSNP
rs192711401 3084 dbSNP
rs1352727592 3092 dbSNP
rs1047868937 3099 dbSNP
rs587692047 3117 dbSNP
rs773659563 3128 dbSNP
rs868522795 3134 dbSNP
rs934687305 3135 dbSNP
rs772542444 3136 dbSNP
rs1217321157 3138 dbSNP
rs1297270056 3145 dbSNP
rs928619562 3145 dbSNP
rs981746583 3149 dbSNP
rs1405357538 3165 dbSNP
rs970698082 3165 dbSNP
rs994473375 3166 dbSNP
rs587651262 3172 dbSNP
rs587757461 3173 dbSNP
rs1247819246 3177 dbSNP
rs1488353819 3190 dbSNP
rs748356989 3202 dbSNP
rs746865575 3211 dbSNP
rs951807823 3221 dbSNP
rs587695533 3255 dbSNP
rs927825758 3258 dbSNP
rs772090677 3260 dbSNP
rs1468907556 3264 dbSNP
rs1421485508 3269 dbSNP
rs1463090731 3271 dbSNP
rs1165377528 3275 dbSNP
rs993207037 3276 dbSNP
rs1433988761 3283 dbSNP
rs779190151 3287 dbSNP
rs1019006718 3288 dbSNP
rs945310692 3289 dbSNP
rs1275920109 3291 dbSNP
rs1201213235 3292 dbSNP
rs1336225464 3294 dbSNP
rs373157966 3300 dbSNP
rs1228457084 3301 dbSNP
rs1313655495 3305 dbSNP
rs1301499868 3306 dbSNP
rs1220025609 3312 dbSNP
rs1007491506 3314 dbSNP
rs1488822640 3328 dbSNP
rs1223051068 3331 dbSNP
rs913797775 3332 dbSNP
rs989891052 3334 dbSNP
rs148447901 3341 dbSNP
rs749333544 3342 dbSNP
rs1010704876 3347 dbSNP
rs892300337 3349 dbSNP
rs1053226923 3360 dbSNP
rs1360856752 3363 dbSNP
rs190552044 3365 dbSNP
rs965437299 3373 dbSNP
rs1295951884 3376 dbSNP
rs1357050349 3380 dbSNP
rs1447350823 3381 dbSNP
rs1448090065 3382 dbSNP
rs1409069140 3383 dbSNP
rs1283147727 3390 dbSNP
rs144554891 3404 dbSNP
rs1334875634 3405 dbSNP
rs928677171 3406 dbSNP
rs1046121568 3407 dbSNP
rs1288795854 3412 dbSNP
rs1467623161 3415 dbSNP
rs1216427808 3416 dbSNP
rs949011793 3416 dbSNP
rs1444405251 3423 dbSNP
rs1188523312 3449 dbSNP
rs1360019251 3451 dbSNP
rs368943468 3461 dbSNP
rs1178828312 3466 dbSNP
rs1380892274 3468 dbSNP
rs1438814527 3469 dbSNP
rs1156681448 3470 dbSNP
rs587752265 3479 dbSNP
rs587673878 3482 dbSNP
rs1399354721 3485 dbSNP
rs756006565 3486 dbSNP
rs1376878381 3492 dbSNP
rs984928619 3500 dbSNP
rs1333136057 3503 dbSNP
rs1444621201 3504 dbSNP
rs898871502 3512 dbSNP
rs1312060189 3515 dbSNP
rs1378381207 3517 dbSNP
rs587611431 3522 dbSNP
rs952255195 3528 dbSNP
rs1307455636 3530 dbSNP
rs1347586403 3532 dbSNP
rs919419152 3541 dbSNP
rs1278213101 3551 dbSNP
rs1440748089 3582 dbSNP
rs1483933103 3595 dbSNP
rs1200642954 3596 dbSNP
rs1238705801 3602 dbSNP
rs1256249084 3606 dbSNP
rs1214580662 3618 dbSNP
rs1439068660 3618 dbSNP
rs1176711523 3626 dbSNP
rs1396624401 3634 dbSNP
rs1055182057 3636 dbSNP
rs1171620183 3639 dbSNP
rs1314924403 3653 dbSNP
rs1411153301 3659 dbSNP
rs1398938563 3665 dbSNP
rs587741211 3672 dbSNP
rs750243777 3680 dbSNP
rs966161358 3684 dbSNP
rs1329947931 3685 dbSNP
rs1240599169 3686 dbSNP
rs767353407 3691 dbSNP
rs1333140201 3696 dbSNP
rs1234480522 3698 dbSNP
rs1018623948 3700 dbSNP
rs1274453497 3701 dbSNP
rs1343217408 3702 dbSNP
rs1007601619 3710 dbSNP
rs953324231 3713 dbSNP
rs587653580 3716 dbSNP
rs1196628802 3719 dbSNP
rs1312807617 3719 dbSNP
rs906266162 3721 dbSNP
rs1451939574 3725 dbSNP
rs1397886746 3734 dbSNP
rs1244610441 3739 dbSNP
rs1379941482 3739 dbSNP
rs184862837 3749 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_124A_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell miR-124 + A ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' uaCAUUAUGACA-AUAGACUUu 5'
            | || |  ||  ||||||| 
Target 5' agGAAAGAGAGUGAAUCUGAA- 3'
 		3 - 23
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
CLIP-seq Support 1 for dataset GSM4903826
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / PID21_NS
Location of target site NM_024408 | 3UTR | AGCCCCACUUCUGAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161237
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_024408 | 3UTR | AUUCUAAAUGGUGACUCUCUGCCCUUGGACCCAUUUAUUAUUCACAGAUGGGGAGAACCUAUCUGCAUGGACCUCUGUGGACCACAGCGUACCUGCCCCUUUCUGCCCUCCUGCUCCAGCCCCACUUCUGAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_024408 | 3UTR | GGUGACUCUCUGCCCUUGGACCCAUUUAUUAUUCACAGAUGGGGAGAACCUAUCUGCAUGGACCUCUGUGGACCACAGCGUACCUGCCCCUUUCUGCCCUCCUGCUCCAGCCCCACUUCUGAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_024408 | 3UTR | ACUCUCUGCCCUUGGACCCAUUUAUUAUUCACAGAUGGGGAGAACCUAUCUGCAUGGACCUCUGUGGACCACAGCGUACCUGCCCCUUUCUGCCCUCCUGCUCCAGCCCCACUUCUGAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_024408 | 3UTR | CUCUCUGCCCUUGGACCCAUUUAUUAUUCACAGAUGGGGAGAACCUAUCUGCAUGGACCUCUGUGGACCACAGCGUACCUGCCCCUUUCUGCCCUCCUGCUCCAGCCCCACUUCUGAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_024408 | 3UTR | AAAUGGUGACUCUCUGCCCUUGGACCCAUUUAUUAUUCACAGAUGGGGAGAACCUAUCUGCAUGGACCUCUGUGGACCACAGCGUACCUGCCCCUUUCUGCCCUCCUGCUCCAGCCCCACUUCUGAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_024408 | 3UTR | AAUGGUGACUCUCUGCCCUUGGACCCAUUUAUUAUUCACAGAUGGGGAGAACCUAUCUGCAUGGACCUCUGUGGACCACAGCGUACCUGCCCCUUUCUGCCCUCCUGCUCCAGCCCCACUUCUGAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset Chi_124A_2A8_130_50
Method / RBP HITS-CLIP / AGO
Cell line / Condition HeLa / HeLa cell miR-124 + A
Location of target site ENST00000256646.2 | 3UTR | GAAGGAAAGAGAGUGAAUCUGAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 19536157 / Chi_HITSCLIP
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
116 hsa-miR-3942-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT093395 TMA16 translation machinery associated 16 homolog 2 2
MIRT134018 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT194942 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT265807 NOTCH2 notch 2 2 2
MIRT287615 NPEPPS aminopeptidase puromycin sensitive 2 2
MIRT444196 SESN3 sestrin 3 2 2
MIRT444480 UBN2 ubinuclein 2 2 2
MIRT446589 FBXO40 F-box protein 40 2 2
MIRT450501 ALPK3 alpha kinase 3 2 2
MIRT455182 AGTRAP angiotensin II receptor associated protein 2 2
MIRT455446 EPB41L4B erythrocyte membrane protein band 4.1 like 4B 2 2
MIRT456385 KLHL12 kelch like family member 12 2 2
MIRT460303 FLCN folliculin 2 2
MIRT461247 COX10 COX10, heme A:farnesyltransferase cytochrome c oxidase assembly factor 2 6
MIRT467948 SLC16A1 solute carrier family 16 member 1 2 2
MIRT468007 SIX4 SIX homeobox 4 2 2
MIRT468211 SGK1 serum/glucocorticoid regulated kinase 1 2 2
MIRT470635 POM121C POM121 transmembrane nucleoporin C 2 2
MIRT471785 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT473557 MATR3 matrin 3 2 2
MIRT475415 ICK intestinal cell kinase 2 2
MIRT476265 GNAL G protein subunit alpha L 2 6
MIRT477135 FAM107B family with sequence similarity 107 member B 2 6
MIRT478433 DAZAP2 DAZ associated protein 2 2 2
MIRT479050 CNOT6L CCR4-NOT transcription complex subunit 6 like 2 8
MIRT480872 BDNF-AS BDNF antisense RNA 2 2
MIRT484229 CLDN1 claudin 1 2 2
MIRT485055 SUCO SUN domain containing ossification factor 2 2
MIRT489871 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT492411 SCARB2 scavenger receptor class B member 2 2 2
MIRT499682 KCTD2 potassium channel tetramerization domain containing 2 2 4
MIRT505969 RAB11FIP1 RAB11 family interacting protein 1 2 4
MIRT507708 CNIH cornichon family AMPA receptor auxiliary protein 1 2 4
MIRT511878 GID4 GID complex subunit 4 homolog 2 6
MIRT513411 RTP4 receptor transporter protein 4 2 2
MIRT519873 ZFP30 ZFP30 zinc finger protein 2 4
MIRT520703 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT522890 KCNN3 potassium calcium-activated channel subfamily N member 3 2 6
MIRT523781 FAM63B MINDY lysine 48 deubiquitinase 2 2 2
MIRT523950 DYNLT1 dynein light chain Tctex-type 1 2 4
MIRT526894 ATP6V0E2 ATPase H+ transporting V0 subunit e2 2 2
MIRT529167 CCDC25 coiled-coil domain containing 25 2 2
MIRT529703 ZBTB49 zinc finger and BTB domain containing 49 2 2
MIRT530359 PCSK1 proprotein convertase subtilisin/kexin type 1 2 2
MIRT530595 C7orf33 chromosome 7 open reading frame 33 2 4
MIRT531528 CCT6A chaperonin containing TCP1 subunit 6A 2 2
MIRT531992 BARD1 BRCA1 associated RING domain 1 2 2
MIRT539547 AAK1 AP2 associated kinase 1 2 2
MIRT547757 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT549059 CAMSAP1 calmodulin regulated spectrin associated protein 1 2 2
MIRT549836 ECHDC1 ethylmalonyl-CoA decarboxylase 1 2 2
MIRT552698 YWHAH tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta 2 2
MIRT554318 SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 2 2
MIRT556358 MAF MAF bZIP transcription factor 2 2
MIRT557772 FRS2 fibroblast growth factor receptor substrate 2 2 2
MIRT558795 CHEK2 checkpoint kinase 2 2 2
MIRT561367 UBXN2B UBX domain protein 2B 2 2
MIRT561673 RAPGEF2 Rap guanine nucleotide exchange factor 2 2 2
MIRT567898 CSNK1A1 casein kinase 1 alpha 1 2 2
MIRT568456 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT568838 NBPF12 NBPF member 12 2 2
MIRT568846 VPS53 VPS53, GARP complex subunit 2 2
MIRT568856 NBPF1 NBPF member 1 2 2
MIRT568888 NBPF15 NBPF member 15 2 2
MIRT569331 CDC5L cell division cycle 5 like 2 2
MIRT569388 NBPF11 NBPF member 11 2 2
MIRT569398 NBPF14 NBPF member 14 2 2
MIRT569644 NBPF10 NBPF member 10 2 2
MIRT571582 TROVE2 TROVE domain family member 2 2 2
MIRT573027 NBPF3 NBPF member 3 2 2
MIRT573293 UFM1 ubiquitin fold modifier 1 2 2
MIRT608814 SEPT6 septin 6 2 6
MIRT609046 BACH2 BTB domain and CNC homolog 2 2 6
MIRT609517 RAB3IP RAB3A interacting protein 2 2
MIRT611861 SRRM4 serine/arginine repetitive matrix 4 2 2
MIRT612174 EMC3 ER membrane protein complex subunit 3 2 2
MIRT612714 NR2F6 nuclear receptor subfamily 2 group F member 6 2 4
MIRT613305 ARL6IP6 ADP ribosylation factor like GTPase 6 interacting protein 6 2 4
MIRT616357 SH3TC2 SH3 domain and tetratricopeptide repeats 2 2 2
MIRT632424 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 2
MIRT636005 SAMD15 sterile alpha motif domain containing 15 2 2
MIRT636534 FAM126B family with sequence similarity 126 member B 2 2
MIRT637275 FGFR1OP FGFR1 oncogene partner 2 2
MIRT639131 ZNF726 zinc finger protein 726 2 2
MIRT641257 C8orf46 chromosome 8 open reading frame 46 2 2
MIRT642930 KRTAP5-9 keratin associated protein 5-9 2 2
MIRT644018 NUCB1 nucleobindin 1 2 2
MIRT645021 MAGEB4 MAGE family member B4 2 2
MIRT646790 EVC2 EvC ciliary complex subunit 2 2 2
MIRT647338 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT647975 PDE12 phosphodiesterase 12 2 2
MIRT650610 NEK4 NIMA related kinase 4 2 2
MIRT651052 ZNF579 zinc finger protein 579 2 2
MIRT651593 WDFY2 WD repeat and FYVE domain containing 2 2 2
MIRT652785 TCEANC2 transcription elongation factor A N-terminal and central domain containing 2 2 2
MIRT656450 MAPK6 mitogen-activated protein kinase 6 2 2
MIRT660086 BTD biotinidase 2 2
MIRT661398 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT661759 MICA MHC class I polypeptide-related sequence A 2 2
MIRT666402 SH3D19 SH3 domain containing 19 2 2
MIRT668362 FGD4 FYVE, RhoGEF and PH domain containing 4 2 2
MIRT668895 CREG2 cellular repressor of E1A stimulated genes 2 2 2
MIRT669329 BSND barttin CLCNK type accessory beta subunit 2 2
MIRT672369 PDPK1 3-phosphoinositide dependent protein kinase 1 2 2
MIRT686261 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 2
MIRT695571 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT701959 MINK1 misshapen like kinase 1 2 2
MIRT702322 KMT2A lysine methyltransferase 2A 2 2
MIRT705209 BRWD1 bromodomain and WD repeat domain containing 1 2 2
MIRT713949 KCTD6 potassium channel tetramerization domain containing 6 2 2
MIRT717082 EBF4 early B-cell factor 4 2 2
MIRT717896 COPS8 COP9 signalosome subunit 8 2 2
MIRT721043 TRIM67 tripartite motif containing 67 2 2
MIRT722194 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT722782 ACADSB acyl-CoA dehydrogenase, short/branched chain 2 2
MIRT725412 HNRNPU heterogeneous nuclear ribonucleoprotein U 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3942-3p Osimertinib 71496458 NSC779217 approved resistant Low Non-Small Cell Lung Cancer tissue
hsa-miR-3942-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-3942-3p Neoadjuvant chemotherapy resistant tissue (breast cancer)

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