miRTarBase - #MIRT268845


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pre-miRNA Information
pre-miRNA hsa-mir-561   
Genomic Coordinates chr2: 188297492 - 188297588
Synonyms MIRN561, hsa-mir-561, MIR561
Description Homo sapiens miR-561 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-561-3p
Sequence 61| CAAAGUUUAAGAUCCUUGAAGU |82
Evidence Experimental
Experiments SAGE
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 3 2 + 188297554 26449202, 27587585, 29233923 MiREDiBase
A-to-I 4 2 + 188297555 26449202, 27587585, 29233923 MiREDiBase
A-to-I 9 2 + 188297560 26449202, 27587585, 29267965, 29165639 MiREDiBase
A-to-I 10 2 + 188297561 26449202, 27587585, 29233923 MiREDiBase
A-to-I 19 2 + 188297570 29233923 MiREDiBase
A-to-I 20 2 + 188297571 26449202, 27587585, 29233923 MiREDiBase
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN16051820 1 COSMIC
COSN30152233 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1050331859 4 dbSNP
rs1308584826 15 dbSNP
rs1022262507 18 dbSNP
rs1317728266 20 dbSNP
Putative Targets

Gene Information
Gene Symbol C1orf21   
Synonyms PIG13
Description chromosome 1 open reading frame 21
Transcript NM_030806   
Expression
Putative miRNA Targets on C1orf21
3'UTR of C1orf21
(miRNA target sites are highlighted)		 
>C1orf21|NM_030806|3'UTR
   1 CACCAATTTTACCACTCAAACCAGGAGCTACTACTGTGTAAATAGGTTACACCCCAGTTGAAATCTTTGCAAAGGTCGGT
  81 TCTATTCAGCGAACAGCACTATAGCAAAAGAAGATCGTTCCATATTGTACGCCCCATTAAATTACAGTGTTTCTTAATGA
 161 ACTTGCAAAGGAATATTGCTAAAAACAAACAAAAAAAACTGTTATCGAACTTTCTTTGTTGCTGCTAGTTAAAACTTGTT
 241 GCAACTTTTCACTTCTCTTGTGTCCAGGTATGCAGCAAAATTCTGCAATTTCACCTTAAAGATACTGTTGGTTTTACAGA
 321 TGCTCTCCAACCTATTTTCTATAAGATGAGGTAGTGGTGAACTCAGATAACAAACTTCTCTTCTAAACTGGTTCTGCTTC
 401 TAAGACAAGCATCTCCTGCCCTCTCTCCTTCCTCCCCATCTCTCGCACGCAGTCTAGAGATGGACTGAGCCTTGCTTCTC
 481 ACTGGCAGTGTTGAGCTTTGGAGATGGGATGGTTGCTATGCCAAGCCTTGTTTCTCTGCTCAGAAGAAGTAGAGAAGCTA
 561 TTATCAATTAAAAGCATGCTGTGATGTGACTCCTGGAAGTGACGTAGGAGTGAGTGGCAGGTTGTTTGATTTAATAGGTA
 641 TCTTAATCAAGAATTAAGCTTGCAACATTGGCTTTGCTCAGATGCAGATGGAAGTGTGATCACAATCATTTTGAATCCCT
 721 CTTCCTCACTTTTTTTTCTAAGAAAATAAACATTTTACTGTTTTTATGGATCCTTGTCTTCTCCCATTCATCCAGCTCAG
 801 TGTTTTAAGATGATCCTGGGTGCAGAAGTTGAGCCCTCCTTTGCATTGACACTGATAATTAGCCTATAGGGCTCCCTACC
 881 CTTCCATTAAGAATCTACCAAGCATTAGCAAGGCTGAAAGTGGTCTAAGAGGTGAGGGGACATCCTATGACTTTTTAGGA
 961 AGGCCTGAAACCACCTTGTTACCTTTCATTTTGTTAGCAAATAAACCATCCTATTTTGTAACTCTCCCCCTTCAAAATGC
1041 TACATGAGCCTTGCCACTTCCTTTTTCTCTTACTTCCAGCACACTAGACATAGCAAAAGTGTTTGCCTACTCAAAAACAT
1121 AATACTTTTATGCTGATGATGGTATTTGGAGATGTGAAAGCCAAAAGCCCCTGGCAGTGGTGGGGAATGTTGACTGAGTG
1201 TTCAGCAGAGTTTATTTTTCCATACTATATGAAGAGAATGATCTCTTCTCAAAGACAGAAGTGATATTTTTAACAAATAT
1281 TGTCACAAGTAAATAGCAATCAAAAGGAGAAAATAACTTTTGTATTTTTTTAATGTGTTTGATAGCTTTGACGAGGGTTC
1361 TCTTTGTTACTTTCAGGGGAGGGCATCCTATTAAATGCCACGCCAGCAGTCCGGGTCTGGGTTTGTCCCACAAAATCACA
1441 GGAGCACTGTATGTTCCTCTCTTTTGGAGTTGTGACTTTGAAGGGCCTCAATATTAGCCACACTGCCGCCTGCAGAAGGT
1521 GGAGAGTTAAGATGTTCTATGTCAATTTGCTCTTGCCGAAAAGATGAGCCTCGATTTTAAAATCTATCCACATCCAACTG
1601 ATGGCACCATTGATGTGCAAATAATGAGATTCCCTATCTCCTTTTAGACCTGGGACGGCAAAAGGGAAGGGAAGGAAACT
1681 TAGCAGAGTGCTATTGACTATAGATTCACATATTAGCAACAAAATCCCGTAATTCTTTTGGCCAACAGCAGCTATTTTGG
1761 GGAGCAGCTGTGGCTGTTACATAAATAGAGATGCAGCCAAAATTTTAGGCCTTTTATCCTGCTTCTAGCAGAAAAATGCA
1841 GGGAGAGTCAAGTAGTCTAGGGTTTCAGGTTGCCTCCCCTCATATGGTTTTTGGCCAAGTGACTAAAACAGTTTTCCACA
1921 ACTGTAAACAAACTGCTAAGCCCCACCTCAAACTTGTTCACTGGGGACTTTGCTTACCGTTCTGTGGGTGACCTTTTCCG
2001 GGATTTCTTGTTCTTATCAAGCAAGAATTAAGCACATGCTAAACGTCTTCCATTTGACTTCTCTACTCGGTGTCTCAGAC
2081 AGTGTCTTCCCAGAAAACCACCACCCTCTACCCAAAGATGAAACATGCTCATGTCATTTTTCTCATGGTCACATTTAACA
2161 GTTTTGACATGTTATACTTGCGCATAGATCCAAGCGTTTCTTGGGAACCTGACTTTTGAGTGTTTAATAAAGCCGGAAGT
2241 GGTGTTGCCCTGAACCAGCAGATTTTCACCTGGGTTCTGGCTCCGGTGTTTAACACTGGATACATCTTTGATGTGCGAAA
2321 GTGAGTTCATCTTCAGACACATTTGGTACATCCAGAAATAGATCCAAGAAATGGGGTGGTTGAGTGGGTCCGCACGAAAT
2401 GCTTGATTATGTCAGCAACACCCAACACTGTCTGTTTTCCATTTGTTGGTTTTAATCATAAAATTGTCAAGTGATTCGTG
2481 TTTGTACTTTATTTTTTTGTGCCTTCTGAAAGGATCTAAAACAAAAATATTTTGCCTTTTTTTCCCCACGTGTATCTGAA
2561 CATTAAGCAGATTGGCTCAGACACAATGAAAAGGATAATCCAATGTACGTGCTGGTGCACTCTGCTAGTTGTTATCTCTG
2641 TAGGGCTCAGGAAGCTGGAAGGAGGAAGGGAGGGTAAGTGGCCTGGTGAGTGGAGGTAGAAAAATGATGAGAAATGAACT
2721 GAGAGCATTAAGCAGAGAGGGTTGATAGGCTGGCCGTGTCCGGGGTGAAATTGGAAATCCAGCTGCCTAGTGGCCAGTGG
2801 GTGGGGCAAGACTGTCAACGAGATTTACAGCTGGCTTACACATGCCTTATGTCCTCTGAGTTGTAGAGTTGTAAAAGTTC
2881 AGCAGTGTGTGCACAGCTTTCTTTTGGTTGGCAGAGATTCAGGATCATGGAGTACTGCTCTCATAATTGAAGACGTGTTT
2961 GTTATTGGCAGAGAACCTTAAAAAAGGCCTTTACCTCAGCGATGCTTCCTAGCCCCAGGCTTGCAGAGAACACAGAGTGG
3041 TGTTGTGGTCTATTTAGGGACAAAGAAGGTATAAAGTCCAGAGATGAGAAAACTGGGTCAGCCCTCAGAAACTGCAGCAG
3121 CCACGCACACAGAAGCCTGCTGGAAGACAGGTCTCTCTCCGTCCACAGTGCCCATCATCTGAGCCTGGGCTGGGATGACT
3201 CAACTTAGCAAAGACGGACCCAGGAGGAGTGCTGGTTCTTCAGTCTTTGTACTGGCCCCATCCTCTCCTCACTGTAATGT
3281 GAGGAAGCACCTCTGTGTCAGGGCTCACCTGGGCATCCAAAGCGGCCACGCCCACAATCCGACAGCCCCCAGGAGCAGGT
3361 CCAGGGATGATGCAGCCCCCTTCTTGGTCCCATGTGATGTCATCCTGCTTTGTTATCTTCTTATAACTTTATCCTGCTAT
3441 AACTTTATCCTCTTCCCAGCCTCATCCCTGTTTTTCTGTTAGGGCAAGACTCTTCCATAAGCCTGCTAAAAAACAGAGAT
3521 GATACCTCTTACAAACTTTACCTCATAGCCTGTGAAGCAGGTTGGCATGTGGATTACAAGTCCTGCTTTGACACTGGGCA
3601 AGAATTTAAGATTGTTCTATCTCTACTAGTCATAGAAAAGAAACATTGTTAAACATGTTGAGTTTTAAAGGAAGAAATAT
3681 TTTCAAATTCTTAATCCAAGAAAATACTGAGTTGGAATCTTAGACTTCGGGACTCTGACACGTTCTTTATGAAAGGCAAA
3761 ATAATTGGTATCTAAAGTTCTCTCCTTCCTGCCTCCCCTAAAGAAAAAGGATATTAGATTGCACACTATAATTTTACATA
3841 AGATCTGCCTTCCACACTTCCCTGCTGGAAGGCATTCTCAGAGCTTTATGTCTTCGTACCTCTCAGAGATTGGACTTTTT
3921 CTTGTTTAAAACCCCAACCAAAAAAAATAATAAGGCATGATTGGTGGGGAGGGAATGTGTATTTAGGGGCATAATAAAAA
4001 GGTGGCTCGAAGCAGGAACTTTGGCCTCATGGTGTCATGGGTGGATGCCTGGACTCCAGTGTGCCTGTGAGGGGCTGGGT
4081 TAGGCAGTCGGCTGTCACACTCACATGTGCCTGCAATAAACCTTTTGGAATTTCATGAACGAGGTCTATGAATTGCCTTT
4161 TGCCAATGAATGGATGTATTTTTCCAAGGGGGGAATAGTATCCTTGACTTTGGCAGTCACCTTTTTGTATGTCTCTAGAA
4241 AGGGGTCAAAAAACTATGGTAAAGATGAGGCTTATGAGTGAATACCTCTGGGACAAACCTTAGGACTCACAAGCTATGCC
4321 ATGTTTTTCAGGAGACTCTTGTACCTTATCTGGAATCTAATCTTGGGAGAAGAGGAAAAAGGAGCTAATATTTGTCATTT
4401 ATACTCACTCTGTGCCAGATACTGTGCTAGGCATTTTATAATTGTTTTGTGTCATCCTCATGATAATCCTGTGAAGTAGA
4481 TCTATTACCCCCGTGTTCTAAATAATAGATCTTAAGTGTGGAATGCATCTATCCAACATAAATGCCCATGTTGAAAGAAG
4561 GAAAGATGTCATTCAAGTATTTTTCAAATTCTTTTTATTATGACTATGCCCTTCGCAACACTGTGAAAACAACCCCTGGG
4641 GGCATCTGCCTTCCAGAATCTCTCTCTGGCTTCTCACCAGCTTGGTTTCCTCATGGGGAGTGTTTTATTTGGCCTCCCCT
4721 ATCTGAGCTGCACACACACCAGGGGAGGCCACTGGCTAACAGTAGGACTTCAGTGCCCTGAGGAAAAGGCTTTGGGAATT
4801 TAGGCACACGTTTCTCTCCTTGGAATCCTTCTAGCATCTGGAAAAGGAACCTGGTATTTCTGCAGTTAGATACCAGATGC
4881 AACCAGAACAGGCTTTCGAGTGCTGTGATTTCTTTCCTGGGTTCCCAAGTCTTGTTGTTTCATCACAAACTGTATCTTTT
4961 TAAGGTTAAAAGTCTTGACCTTCATGGGGGTCTGGGACAATCCGATCTCCAAGCATGGAGGAAAGGCAATGCCTGGACCA
5041 CTGACTTGCATTGAAATCCTTTCTTGTGGGCTAGGGTTTGATGTCTCTTTTTCATCTTTGGACTGGGGATCTGCATCTTC
5121 CAGGTCCATTTAAGCACTGAAACTAGATGCAAATCTCTTTCGAGACCTTACATGTTTTAGATAGTCATGTAATGACTTGG
5201 ATAGACATTTAAATAACTTGTTCCAAGGTCGGAAGAGCCCAAGAACTCCTCAGAGTTCCTCTTCTTGCTTCTTGAATCAC
5281 ATCCTCTAAAGATGACTCATGTCTCCATAGCAACTGTTAAAGGTGCTGCCTAGACGGGACCCGCTCCCACCTTTACTTAC
5361 TTTGCTCGAAGGAACCAAAACAATGTCCTTGTGTAAAGGGGCTGTCATATCCAGTTTTCCTTTGAAATCTGGCCCCCAAG
5441 ATCCTGCTTCTTTCTAACCTGGCAGCTGTCATGTCCCTTCAAGATGATGTGGGAAATGGCCCTTACAACTTGGGAACCAC
5521 AGAAATTGCTGTATTTCGGGAAGATTCACCTCTAAACTGAAGGCTTCATTCTGATAGTGTCTGCCCTCTCTACCCTGATT
5601 TCGCCCTTCTTTGCTTCCATTTTTAGCCCAAGGCTTTGAATTTGATTGAGTAAGACTTAGAGGCAGTATAAAGAACACCA
5681 TAAACTTAGGCAGAGGTCCCTTAGGGTCTCTAGAGTTGAAAATAATTCTACAGCCTTAGGGGGACCTCTTGGCATTGACT
5761 CTAAAGGGAGAGAATAGCCCCTGTGTCCTGGCATTTCAGTCTAGACCTTCAAGGACTGTTCTCTCTTGACAGGCAAGCAA
5841 GCAAAGAAAGTTTTGCAATAGATTTCAAGCCAGTTTTTCCATTCAAACCAAGATGCAAATTCATAAAATTACTCTTTTCC
5921 TGGAATAGATCCAGGCAGCTGCCTTATTAGAACTTTAGATTCGGATCTATTTTCTTAACACACATACACATACACGCGCA
6001 TACATACATATACAGAGAGATACGTGGAGAAAGGAAATTTACTCTATCATTGCAATACTTCAAGAAAGAGCTGTATTTTG
6081 CCTTTCTGTAATCTCCAAGATAGTGTCTAGGAAAGTAATAGTATAACTATAGGGATACCGAAACAGGAAAAACCAGCCAT
6161 CACTCTTGAGAAAGTTTGAGTTCGACTCACATGGGAGAATCGAGGTCTGCTACTCGTCTTGCTTTGTGCCCCATCTGTGC
6241 CTGGATGCCCTACTACATCTGCTTGACTCGTCTGGGCTGCTAGCCGGGGTGTTGTGGCTGACATCCTTTCCTGGCCTTAC
6321 ACACATAATAGACACATCCCTAACGGCGTGTGCCTGGTCCAGCCACATACAGCCACCACATGTGTCACACACTGTCCCCC
6401 TCATCCATGTGGACTTGACTGGCATTTCAGCAGCTCCACTGGGATGCTCTAACCCCAGTGTGTGGAGTTGGGGTCCCTTC
6481 ATCTAGGTTGACCCAGGTATAGCATTTTTAGCATTGCCTTTCCAGTCTTGATGATTCATTCATTGAACTCATTTATTTCT
6561 GGAGCCCCTGGTACACTCCAGGCACTGCGCTAATTGCCAGCAAAGCACAACTGAACTAAATCCACCTTCAAGGAACCTAG
6641 CCATAACGAGGGAGGCAGCATGGAAGTACCCTACAGGGGAAAGTCCTGAGTGCTGTGGGAGCATCTCACCGTGGCAGCCA
6721 GCCCAGTTTTGGCAATCAGGGGCTTCCTGAAAGAGGTGACATCAAAGCCCGGATGTGTCAGAGGACTGAGGGAGAGTGTT
6801 ACTAAAGGACTTTCAGGCTGAGAGGATAGCACAGGACTCAGCCCAAAGGAGGGCCAGTGTGGACTGTCCAGGGCCAGCCT
6881 GCAGTACAGAGGCTGGAGCTTGGACTTGTAGAGGGAGAGAGAAGAGCAAGGGACGTGGACGGGGCAGTGAGCCAGGCTAG
6961 CCACAGAGGGTTCCCGGGGCTTTGCTGGGGATTCAGGGAGCATAAATAAGAGCTTTAGGTGGTGCTGTGTCCTCTGCAGC
7041 CCACTGCTGAGGTCCTCCAGACAGGTAAGGTGTGGTCACAATCAGGGCCGGGGTTTCCCTGCTCACTGCGGCAGTGCAGG
7121 GGTGCTTGCTGAGATGATTCATCCCAGGGTGTCCTCTGTCCCTTACCCAGCCCCAACTCCTCTTCCTCTGCCAAAAGCTA
7201 TTTGAATTCAAGGACTTTAACCTGGGCCGGATCTGGTTTGGAGACAAAGGGGACAGCTCTGGGTCAGCATGACCTTCTTT
7281 AGAGCCACTAAGGCGAAAAATACCGTTTGGGACCAGGCTGGCCTAGACCCAGGGATGAGAATGCACCCTAAAATAAATAT
7361 ACGGGAAGCAGCAGAGGGCTTCCCTGTCTAGTGTGTGATCCTAACTAAAGGCAGCTCTCTTGGACAGCCTTCCCCTGGAT
7441 TAGGTCACATACACCTGGTGGCCAAGCCTCTGCTGGGTCCCAAATACACACCCGAGTCCTGCCAAAGAAAGGAGATTTTT
7521 AAAAAGCACAGACAAATTGTATGCAAGTGGAAAATACCCATAGGCCTAGACAGCTGTGGAGGGAAGACCTCGTGGGTACC
7601 TGGAGGCTGCCAGAGCTGGGAGCTCTGCAGGTATGAGTCAGGGAAGGCTCAGAGACAAGCAGAATCTCTCTATGGAGACA
7681 ACTTGCAGTGCCTTTTAGGTTTTCCAAATAACCTCGGAGTTCAGAGCATTGGGTTTTTTTCTCCCCTCCCCACCCCCAGA
7761 AAAATAATTAGAAAAATGTTTAGGAGAAAGGAAAAGAATTAGATGCATCAGAATACCAGCTATAAGCCAACACTGTTTCC
7841 AGAAACTCAAGAAAAAGCTCAAACAGAAGACAGTTCCCCTGAGAGGCTGGAGGCGTTGGTGCTGAAGGCAATTTTCCTAG
7921 CTAAGGGGCACTGGGCCTTGCTGCACCTTGGGGCTGACCTTTTTTGCAAAACACCCACCCCTGCCCTCCTGGCATACTCA
8001 ACAGCAACGCCAGCTTTCTGGACCCTTGGAAAGATGTTAGCTCAAACACCCACTTTTTCCAGATCTTCCTCTTGCTCTTC
8081 ACTGAGGAATTTGTAATTCTGAGGCTAGCGATGCCCACTCGGATATTCCGCAGGCCCAGGTGTTTAGATTAGAATTTGTC
8161 CAGCGGTAATCCTGATGCTGGAAACCAACAAACATTTGGCCTCATATTCACCCATTTAAAAACTAGAGCCCCTGGCAGGT
8241 CCCCTTAGGGCCATGTGTTCATGGAATATAAGCCAAGTTTGCCTTAGGCTTGTTCATGGAATATAAGCCAAGTTTACCTC
8321 TCCCCATTTTCTGCCCTGGCCCACTTCCCACTCACCTCCACCTCATTGCCAGGAAGGGATCAAAATGCCTCCATGCCAGT
8401 TGTTAATGGCTACATATTTGCCCTTCCCAAGGGTATTTGCATTTTATTTAGGAACATGGCCTTATATTCAAGGAAAATCT
8481 AGCATCAAGATTACGAGGCATCACCTCTCAATCAGGTCTGGGAGGTATCTTGGGGCATTGCTCTTCTGAACACCTGCAGA
8561 GGCTTCCTCAGGTGAGTGTGGGAGCCCGGAAGGGTGGCCTCCCTAACCACTCTGCCTGCACATGAATTCTCCAAAGCAGT
8641 GGGCCCCCATCTGTTTCAATTACACATGCCTGTCAGCAAAAACTTCGTGAGATGCACTCTCTCTGTGTGTTTATTAATTT
8721 ATTTAAAGCATATATCCCTTTACTTTTGTACTACTATATTAGGCACATTATAAAAAGTATACAGCATAGAAACTTTAAAT
8801 GAATAAGACACAAAATATTATAAACAGAGGTTCTGGCATTTTCTCTCTGAACTCCTGAGGGGGACCTTGGGCACCTCCTG
8881 GTATGTGCACACCCCACTTTGAACACCCTTGCTTTAGTGCAAATCAGCACGCCTAAATAGCATCCCAAACCACTGTGCGA
8961 CATTTGGCCTGCAGAATAAGAAAGTCCTAAGGCAGAATCCCCAGGAACTTCAAATCTGGGAGATGAGGAAAGAAAACTCA
9041 CTCACAAACAACATAAATGTAAATAATTCAAAACCCTAAAGGAGAGCTGTCCCTAGACAGTAGTGGCTACAGGTGCTAAG
9121 CAAAAGTCAGGTACACTGGACAGAGCCATGCGATTGATTGTTCATCTTCCCTCTCTGGGTCTCCAGAAAAGGACACTGGC
9201 AATATCCCCAGCTCTCTCCTGATTGGAATTCTTTGAACCCTCGAAGTGCTCCAGCAGTACTACCCCCCACGTAGCAGTGG
9281 GCCCATGTCGCTTGAATATTATTTTTGATTTGACCACCAAGATGTAATGATGATTCTATTCCATTTTGAAAAGGGTCTGA
9361 GAAAGTGTACAGGTCTAATTATATATACATATTTATACATGTGTATTTTTGTTTATTGTTACATTTTGACATTGGACTTT
9441 CTATTAAATAATTTTTAAGAGTTGG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ugAAGUUCCUAGAA--UUU--GAAAc 5'
            |||||| ||:||  |||  |||| 
Target 5' caTTCAAGTATTTTTCAAATTCTTTt 3'
 4570 - 4595 138.00 -6.30
2 
miRNA  3' ugaaguUCCUAGAAUUUGAAac 5'
                :| ||||||:||||  
Target 5' tgagttGGAATCTTAGACTTcg 3'
 3708 - 3729 132.00 -12.00
3 
miRNA  3' ugaAGUUCCUAGAAUUUGAAac 5'
             ||||| |  ||||:|||  
Target 5' taaTCAAGAA--TTAAGCTTgc 3'
 644 - 663 131.00 -9.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31507311 45 COSMIC
COSN26968499 53 COSMIC
COSN30469161 55 COSMIC
COSN30541126 62 COSMIC
COSN30179958 72 COSMIC
COSN31574673 83 COSMIC
COSN30145394 117 COSMIC
COSN28185501 122 COSMIC
COSN30118239 132 COSMIC
COSN30145335 154 COSMIC
COSN20068009 199 COSMIC
COSN208054 265 COSMIC
COSN20128132 407 COSMIC
COSN31521696 540 COSMIC
COSN17650022 679 COSMIC
COSN26585429 803 COSMIC
COSN30173115 819 COSMIC
COSN30164449 917 COSMIC
COSN1417120 1049 COSMIC
COSN31534998 1066 COSMIC
COSN8637016 1193 COSMIC
COSN30159275 1246 COSMIC
COSN216709 1258 COSMIC
COSN30543562 1346 COSMIC
COSN28310694 1354 COSMIC
COSN30164534 1354 COSMIC
COSN17962005 1494 COSMIC
COSN31596733 1507 COSMIC
COSN7188447 1613 COSMIC
COSN30174764 1687 COSMIC
COSN31607265 1736 COSMIC
COSN31554889 1750 COSMIC
COSN28725054 1800 COSMIC
COSN31536531 1941 COSMIC
COSN6011737 1946 COSMIC
COSN31531431 1967 COSMIC
COSN31607092 2008 COSMIC
COSN32056562 2318 COSMIC
COSN28741501 2839 COSMIC
COSN9052815 2872 COSMIC
COSN5856748 2874 COSMIC
COSN31538499 2945 COSMIC
COSN21006355 2974 COSMIC
COSN31521695 3016 COSMIC
COSN25483354 3137 COSMIC
COSN28201031 3161 COSMIC
COSN2836934 3216 COSMIC
COSN20132854 3322 COSMIC
COSN17718098 3835 COSMIC
COSN8410488 3842 COSMIC
COSN20871292 3897 COSMIC
COSN26430128 4064 COSMIC
COSN15663067 4286 COSMIC
COSN31480909 4309 COSMIC
COSN25197081 4325 COSMIC
COSN31593973 4466 COSMIC
COSN8323803 4501 COSMIC
COSN31516560 4512 COSMIC
COSN26145333 4579 COSMIC
COSN31547189 4592 COSMIC
COSN26509431 4742 COSMIC
COSN21160975 5236 COSMIC
COSN6431950 5300 COSMIC
COSN6011738 5320 COSMIC
COSN28418813 5369 COSMIC
COSN15661278 5489 COSMIC
COSN25070444 5502 COSMIC
COSN1417121 5623 COSMIC
COSN21345177 5687 COSMIC
COSN31522738 5899 COSMIC
COSN31556611 5956 COSMIC
COSN26568246 5986 COSMIC
COSN31555823 6003 COSMIC
COSN15661369 6013 COSMIC
COSN31540959 6085 COSMIC
COSN21203147 6424 COSMIC
COSN15725412 6627 COSMIC
COSN28201868 6634 COSMIC
COSN24803122 6741 COSMIC
COSN8410489 6935 COSMIC
COSN9052816 7214 COSMIC
COSN7188448 7544 COSMIC
COSN27243429 7818 COSMIC
COSN1417122 8241 COSMIC
COSN6431951 8376 COSMIC
COSN31778031 8471 COSMIC
COSN31778032 8473 COSMIC
COSN26714698 8493 COSMIC
COSN32056087 8495 COSMIC
COSN32069267 8519 COSMIC
COSN7188449 8688 COSMIC
COSN1417124 8856 COSMIC
COSN6011739 8931 COSMIC
COSN24271979 9065 COSMIC
COSN31522027 9188 COSMIC
COSN22544658 9192 COSMIC
COSN8410490 9231 COSMIC
COSN31584675 9232 COSMIC
COSN31608980 9244 COSMIC
COSN31481819 9251 COSMIC
COSN8637017 9275 COSMIC
COSN16882453 9290 COSMIC
COSN31609831 9337 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1237997237 1 dbSNP
rs1472469482 2 dbSNP
rs778119102 8 dbSNP
rs1291921216 11 dbSNP
rs1425990379 11 dbSNP
rs759944882 13 dbSNP
rs200150085 16 dbSNP
rs747444504 17 dbSNP
rs1034509512 18 dbSNP
rs16823344 21 dbSNP
rs1394780618 22 dbSNP
rs777041732 26 dbSNP
rs1335381232 27 dbSNP
rs1340405292 36 dbSNP
rs759618253 37 dbSNP
rs753832764 38 dbSNP
rs1341873380 43 dbSNP
rs769782929 48 dbSNP
rs1257094620 49 dbSNP
rs1337134122 51 dbSNP
rs775795914 53 dbSNP
rs1384456190 54 dbSNP
rs1289262330 69 dbSNP
rs1455109360 76 dbSNP
rs1366699373 79 dbSNP
rs1164093234 82 dbSNP
rs1475288607 85 dbSNP
rs1215827919 91 dbSNP
rs990552713 92 dbSNP
rs1253677201 97 dbSNP
rs1468120049 98 dbSNP
rs1427565590 111 dbSNP
rs145367537 117 dbSNP
rs781246797 118 dbSNP
rs1271870832 121 dbSNP
rs540421236 125 dbSNP
rs1335615453 131 dbSNP
rs551119843 133 dbSNP
rs190038985 135 dbSNP
rs1225284456 137 dbSNP
rs569368877 141 dbSNP
rs753130753 144 dbSNP
rs1383749145 150 dbSNP
rs996780839 162 dbSNP
rs769936547 163 dbSNP
rs1325209816 179 dbSNP
rs911034954 181 dbSNP
rs942513374 182 dbSNP
rs775568401 184 dbSNP
rs1394536618 187 dbSNP
rs1028220074 191 dbSNP
rs562859427 191 dbSNP
rs749341511 191 dbSNP
rs1439611789 195 dbSNP
rs1321496812 197 dbSNP
rs1337402626 199 dbSNP
rs1442848413 201 dbSNP
rs1278698964 204 dbSNP
rs1348332847 207 dbSNP
rs536886164 208 dbSNP
rs377743598 214 dbSNP
rs901222425 222 dbSNP
rs962461138 228 dbSNP
rs1235330612 229 dbSNP
rs1368982871 236 dbSNP
rs1274112439 239 dbSNP
rs34211113 240 dbSNP
rs374189424 245 dbSNP
rs1041716693 246 dbSNP
rs1326739814 256 dbSNP
rs1211832888 259 dbSNP
rs548761702 265 dbSNP
rs567057258 267 dbSNP
rs1432491905 268 dbSNP
rs1394030921 269 dbSNP
rs534480954 272 dbSNP
rs199784650 276 dbSNP
rs755785119 277 dbSNP
rs1000435892 286 dbSNP
rs1034625485 289 dbSNP
rs947657997 297 dbSNP
rs147994697 310 dbSNP
rs774495718 315 dbSNP
rs1197565314 332 dbSNP
rs924786772 333 dbSNP
rs934436468 335 dbSNP
rs1234809374 339 dbSNP
rs866658072 342 dbSNP
rs1024903318 346 dbSNP
rs970465893 349 dbSNP
rs1441372117 351 dbSNP
rs1336216059 352 dbSNP
rs900857891 355 dbSNP
rs1231510345 359 dbSNP
rs1412339137 367 dbSNP
rs1374525585 369 dbSNP
rs972927089 376 dbSNP
rs1025294951 377 dbSNP
rs1435800973 379 dbSNP
rs10228 380 dbSNP
rs1157132678 381 dbSNP
rs1470075708 386 dbSNP
rs996475107 397 dbSNP
rs1364835999 401 dbSNP
rs952403059 404 dbSNP
rs1049682096 411 dbSNP
rs570462353 412 dbSNP
rs753340574 416 dbSNP
rs537426571 418 dbSNP
rs182626413 424 dbSNP
rs1211867229 426 dbSNP
rs942628292 436 dbSNP
rs1160883597 441 dbSNP
rs761667174 445 dbSNP
rs368085327 446 dbSNP
rs1354266166 449 dbSNP
rs961206102 450 dbSNP
rs529750530 452 dbSNP
rs1343002408 461 dbSNP
rs1416447557 469 dbSNP
rs1316717231 506 dbSNP
rs1042222603 513 dbSNP
rs1386379794 517 dbSNP
rs1161969510 519 dbSNP
rs904505804 527 dbSNP
rs1035695827 539 dbSNP
rs1188679540 542 dbSNP
rs866505160 544 dbSNP
rs1055819893 557 dbSNP
rs1240535318 565 dbSNP
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rs991486018 596 dbSNP
rs915913176 597 dbSNP
rs1340209011 603 dbSNP
rs969402248 604 dbSNP
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rs1269202531 619 dbSNP
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rs924788530 633 dbSNP
rs1346157590 639 dbSNP
rs934793651 642 dbSNP
rs1460353392 645 dbSNP
rs1211976406 655 dbSNP
rs572266645 663 dbSNP
rs1024467989 664 dbSNP
rs922313733 669 dbSNP
rs1186142298 677 dbSNP
rs1475651266 682 dbSNP
rs898015827 695 dbSNP
rs993911271 696 dbSNP
rs932386797 697 dbSNP
rs1184995691 703 dbSNP
rs1273677867 708 dbSNP
rs1215070018 730 dbSNP
rs370873816 730 dbSNP
rs531793874 730 dbSNP
rs888106166 738 dbSNP
rs10030 739 dbSNP
rs941287378 740 dbSNP
rs1167244723 755 dbSNP
rs1300276203 761 dbSNP
rs546110221 770 dbSNP
rs1439111246 774 dbSNP
rs1370937652 777 dbSNP
rs1327137510 780 dbSNP
rs1025789718 787 dbSNP
rs1376872091 788 dbSNP
rs1368565476 789 dbSNP
rs1352824684 793 dbSNP
rs1036925393 799 dbSNP
rs896980955 803 dbSNP
rs868507719 807 dbSNP
rs191142916 812 dbSNP
rs1313218101 819 dbSNP
rs1034806696 821 dbSNP
rs1017896900 823 dbSNP
rs532583916 834 dbSNP
rs544606053 836 dbSNP
rs1192851105 844 dbSNP
rs182611011 847 dbSNP
rs530172261 852 dbSNP
rs1231830234 853 dbSNP
rs1204530290 859 dbSNP
rs548825490 859 dbSNP
rs1343899033 864 dbSNP
rs772905176 867 dbSNP
rs1327098456 872 dbSNP
rs1232621738 887 dbSNP
rs1347572384 894 dbSNP
rs1304881667 897 dbSNP
rs922449223 898 dbSNP
rs1226863856 901 dbSNP
rs967640150 901 dbSNP
rs567023488 902 dbSNP
rs1297708694 905 dbSNP
rs1350602393 909 dbSNP
rs968722069 923 dbSNP
rs760335526 924 dbSNP
rs1433943535 925 dbSNP
rs1395446900 932 dbSNP
rs765952729 942 dbSNP
rs979443229 950 dbSNP
rs936080480 953 dbSNP
rs1484926000 958 dbSNP
rs1177298590 962 dbSNP
rs1483737887 972 dbSNP
rs1255010423 976 dbSNP
rs1198363568 977 dbSNP
rs1209690823 987 dbSNP
rs1485761595 994 dbSNP
rs1256956731 1000 dbSNP
rs1055766516 1001 dbSNP
rs547902249 1002 dbSNP
rs1235830357 1003 dbSNP
rs1263477588 1014 dbSNP
rs915954768 1027 dbSNP
rs12754494 1029 dbSNP
rs141633164 1030 dbSNP
rs1046426216 1036 dbSNP
rs1387814967 1040 dbSNP
rs1414414324 1045 dbSNP
rs571055538 1083 dbSNP
rs778905076 1085 dbSNP
rs1451297486 1089 dbSNP
rs898093234 1091 dbSNP
rs776981140 1095 dbSNP
rs754544084 1097 dbSNP
rs1159705338 1106 dbSNP
rs1473325661 1107 dbSNP
rs1415037607 1115 dbSNP
rs922747004 1120 dbSNP
rs530411551 1124 dbSNP
rs1202599965 1126 dbSNP
rs150085786 1129 dbSNP
rs745833013 1131 dbSNP
rs1290843458 1142 dbSNP
rs888156495 1143 dbSNP
rs1385873737 1168 dbSNP
rs1260719739 1170 dbSNP
rs1381870620 1171 dbSNP
rs1318580399 1194 dbSNP
rs1331770816 1199 dbSNP
rs752106439 1205 dbSNP
rs1005296479 1208 dbSNP
rs1017888541 1224 dbSNP
rs1232710917 1225 dbSNP
rs1341323172 1240 dbSNP
rs1373319818 1241 dbSNP
rs1315083504 1242 dbSNP
rs1380354688 1258 dbSNP
rs1442258772 1265 dbSNP
rs72737731 1281 dbSNP
rs567835994 1310 dbSNP
rs1029970151 1313 dbSNP
rs967336376 1316 dbSNP
rs779666242 1318 dbSNP
rs1163608786 1325 dbSNP
rs1392148213 1325 dbSNP
rs1461485031 1328 dbSNP
rs1369875219 1334 dbSNP
rs1190566443 1335 dbSNP
rs977626239 1338 dbSNP
rs1241546358 1343 dbSNP
rs1427165437 1347 dbSNP
rs925780570 1353 dbSNP
rs1261679668 1354 dbSNP
rs957440601 1357 dbSNP
rs534855850 1358 dbSNP
rs188870407 1361 dbSNP
rs915894204 1363 dbSNP
rs781577362 1366 dbSNP
rs1213200986 1370 dbSNP
rs1357109685 1381 dbSNP
rs1194182703 1384 dbSNP
rs1225499777 1401 dbSNP
rs553570085 1402 dbSNP
rs1056252945 1403 dbSNP
rs572231416 1403 dbSNP
rs1160938058 1405 dbSNP
rs1364199286 1406 dbSNP
rs929576902 1408 dbSNP
rs1049216558 1413 dbSNP
rs193150134 1414 dbSNP
rs1453266552 1418 dbSNP
rs1157283229 1419 dbSNP
rs1461180806 1421 dbSNP
rs1396755668 1428 dbSNP
rs397841688 1430 dbSNP
rs3841434 1432 dbSNP
rs397974022 1432 dbSNP
rs56715278 1432 dbSNP
rs201966512 1436 dbSNP
rs16823345 1437 dbSNP
rs571717615 1437 dbSNP
rs1000167642 1440 dbSNP
rs1251726472 1440 dbSNP
rs1452315526 1447 dbSNP
rs1269563852 1448 dbSNP
rs1194110036 1455 dbSNP
rs1366021841 1457 dbSNP
rs1275593377 1465 dbSNP
rs1393675217 1472 dbSNP
rs3814339 1477 dbSNP
rs1335594530 1483 dbSNP
rs1227363747 1486 dbSNP
rs371794103 1487 dbSNP
rs756301911 1492 dbSNP
rs780197936 1508 dbSNP
rs1332692342 1509 dbSNP
rs189211873 1525 dbSNP
rs138675102 1527 dbSNP
rs1336286249 1536 dbSNP
rs1370842705 1540 dbSNP
rs113468284 1546 dbSNP
rs530235269 1553 dbSNP
rs1432089385 1555 dbSNP
rs998824343 1556 dbSNP
rs1393644108 1557 dbSNP
rs542379173 1559 dbSNP
rs147414727 1561 dbSNP
rs1487443164 1564 dbSNP
rs1379830138 1567 dbSNP
rs957213488 1571 dbSNP
rs527934778 1573 dbSNP
rs552488348 1574 dbSNP
rs1252892702 1587 dbSNP
rs1023025578 1591 dbSNP
rs971511782 1592 dbSNP
rs1250949668 1595 dbSNP
rs1279351954 1599 dbSNP
rs981809097 1613 dbSNP
rs1347068977 1618 dbSNP
rs919302168 1624 dbSNP
rs1277683474 1641 dbSNP
rs1472167479 1642 dbSNP
rs909598317 1651 dbSNP
rs1289896362 1652 dbSNP
rs1412555673 1653 dbSNP
rs12096795 1657 dbSNP
rs1420214321 1658 dbSNP
rs1462164819 1662 dbSNP
rs531854584 1669 dbSNP
rs1415380568 1676 dbSNP
rs1164248393 1684 dbSNP
rs985037446 1688 dbSNP
rs909367314 1694 dbSNP
rs191709889 1695 dbSNP
rs1184350525 1697 dbSNP
rs943518043 1697 dbSNP
rs1257019808 1698 dbSNP
rs568465250 1712 dbSNP
rs1282150539 1716 dbSNP
rs899548223 1729 dbSNP
rs1269485219 1730 dbSNP
rs916435964 1730 dbSNP
rs947874485 1736 dbSNP
rs1295504186 1742 dbSNP
rs535915080 1752 dbSNP
rs1449300009 1753 dbSNP
rs933760564 1755 dbSNP
rs2378890 1759 dbSNP
rs1233546431 1762 dbSNP
rs1311334162 1764 dbSNP
rs1319443233 1768 dbSNP
rs140086170 1776 dbSNP
rs1389972204 1781 dbSNP
rs763123006 1786 dbSNP
rs768895059 1787 dbSNP
rs1161494440 1806 dbSNP
rs1051201720 1819 dbSNP
rs1413399871 1831 dbSNP
rs1182661766 1837 dbSNP
rs774409964 1840 dbSNP
rs1251872832 1853 dbSNP
rs1482692954 1856 dbSNP
rs998751211 1858 dbSNP
rs1032902684 1860 dbSNP
rs1202694324 1869 dbSNP
rs893070421 1877 dbSNP
rs1249790622 1878 dbSNP
rs1211322526 1886 dbSNP
rs891771974 1899 dbSNP
rs1290214470 1903 dbSNP
rs1012719982 1922 dbSNP
rs1475636934 1923 dbSNP
rs998456463 1926 dbSNP
rs1336966469 1935 dbSNP
rs1268816345 1942 dbSNP
rs1181540915 1943 dbSNP
rs1029880034 1945 dbSNP
rs1366624899 1949 dbSNP
rs1022806445 1960 dbSNP
rs1411694033 1962 dbSNP
rs1007090919 1965 dbSNP
rs139681744 1978 dbSNP
rs981584342 1979 dbSNP
rs752680487 1980 dbSNP
rs1315116487 1982 dbSNP
rs1417589012 1987 dbSNP
rs1376474332 1989 dbSNP
rs1449810990 1993 dbSNP
rs1392020050 1994 dbSNP
rs1191655605 1995 dbSNP
rs575628167 2000 dbSNP
rs1414982739 2001 dbSNP
rs984774378 2012 dbSNP
rs547514000 2017 dbSNP
rs565627300 2025 dbSNP
rs960341830 2036 dbSNP
rs1228186814 2040 dbSNP
rs1343318287 2045 dbSNP
rs909441043 2046 dbSNP
rs1232759291 2052 dbSNP
rs943632519 2064 dbSNP
rs143599854 2069 dbSNP
rs184061451 2070 dbSNP
rs1307651370 2097 dbSNP
rs933730190 2099 dbSNP
rs1391794273 2105 dbSNP
rs1171445203 2106 dbSNP
rs1050895269 2112 dbSNP
rs1043606896 2114 dbSNP
rs902947081 2130 dbSNP
rs1192478834 2131 dbSNP
rs1468132082 2136 dbSNP
rs1250707268 2148 dbSNP
rs934282956 2149 dbSNP
rs376076759 2157 dbSNP
rs1341314780 2170 dbSNP
rs925094668 2175 dbSNP
rs936111901 2176 dbSNP
rs1277219438 2182 dbSNP
rs1226133710 2183 dbSNP
rs1054129202 2185 dbSNP
rs891803401 2188 dbSNP
rs1282162377 2193 dbSNP
rs1485905647 2196 dbSNP
rs576428554 2197 dbSNP
rs1287740961 2205 dbSNP
rs1410668560 2207 dbSNP
rs35382132 2208 dbSNP
rs1372596760 2209 dbSNP
rs1310864494 2213 dbSNP
rs537309537 2235 dbSNP
rs1012877757 2236 dbSNP
rs147273699 2243 dbSNP
rs1182187606 2248 dbSNP
rs1410601405 2248 dbSNP
rs890082142 2253 dbSNP
rs1254901886 2254 dbSNP
rs1180518160 2256 dbSNP
rs907063193 2260 dbSNP
rs1007533179 2261 dbSNP
rs1187123603 2270 dbSNP
rs1327613969 2271 dbSNP
rs1003352138 2274 dbSNP
rs1389654919 2281 dbSNP
rs1448159566 2284 dbSNP
rs1229026634 2285 dbSNP
rs1310812816 2286 dbSNP
rs1352610793 2286 dbSNP
rs1379612039 2289 dbSNP
rs148733332 2289 dbSNP
rs759907378 2297 dbSNP
rs1304317680 2316 dbSNP
rs950878273 2317 dbSNP
rs993899064 2318 dbSNP
rs1458339831 2319 dbSNP
rs1006145211 2322 dbSNP
rs1016223430 2323 dbSNP
rs1432491965 2326 dbSNP
rs1288906527 2329 dbSNP
rs1423971610 2339 dbSNP
rs960370477 2342 dbSNP
rs1183919550 2348 dbSNP
rs142297331 2372 dbSNP
rs1432783211 2374 dbSNP
rs541854879 2376 dbSNP
rs760404040 2384 dbSNP
rs964930053 2392 dbSNP
rs975002417 2393 dbSNP
rs150818634 2396 dbSNP
rs572409580 2397 dbSNP
rs1276260825 2406 dbSNP
rs1244356240 2408 dbSNP
rs1322484608 2411 dbSNP
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rs1216811017 2419 dbSNP
rs1432574704 2428 dbSNP
rs776107267 2428 dbSNP
rs1463636493 2441 dbSNP
rs925157994 2447 dbSNP
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rs1292369779 2471 dbSNP
rs978675816 2473 dbSNP
rs924348801 2477 dbSNP
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rs913351747 2484 dbSNP
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rs1254248062 2492 dbSNP
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rs1390176919 2503 dbSNP
rs766045605 2519 dbSNP
rs914273383 2520 dbSNP
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rs1265371056 2531 dbSNP
rs948605812 2542 dbSNP
rs1044343359 2544 dbSNP
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rs1051117802 2546 dbSNP
rs907133141 2550 dbSNP
rs1002681234 2551 dbSNP
rs1189798178 2551 dbSNP
rs768096783 2552 dbSNP
rs564486530 2553 dbSNP
rs1048030595 2561 dbSNP
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rs550088528 2578 dbSNP
rs1230528999 2579 dbSNP
rs1387261704 2583 dbSNP
rs1329236098 2585 dbSNP
rs1006302528 2590 dbSNP
rs1386819949 2592 dbSNP
rs1392479055 2595 dbSNP
rs1305789002 2599 dbSNP
rs1428289149 2604 dbSNP
rs1370353700 2609 dbSNP
rs1016212192 2610 dbSNP
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rs1327337062 2628 dbSNP
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rs1433814500 2640 dbSNP
rs964712514 2642 dbSNP
rs996816289 2648 dbSNP
rs1030552658 2652 dbSNP
rs955134809 2653 dbSNP
rs1206964884 2654 dbSNP
rs112519537 2668 dbSNP
rs1274143002 2673 dbSNP
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rs1272815499 2682 dbSNP
rs1285847758 2686 dbSNP
rs1408848082 2687 dbSNP
rs1350688901 2691 dbSNP
rs1375306881 2695 dbSNP
rs1309043225 2696 dbSNP
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rs1327152723 2740 dbSNP
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rs914222597 2762 dbSNP
rs547035321 2763 dbSNP
rs1265730283 2764 dbSNP
rs947290681 2767 dbSNP
rs1044467809 2768 dbSNP
rs1227197036 2772 dbSNP
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rs988009617 2788 dbSNP
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rs1397152420 2792 dbSNP
rs923080384 2806 dbSNP
rs1408872289 2811 dbSNP
rs1157096956 2812 dbSNP
rs1456746880 2816 dbSNP
rs934091358 2820 dbSNP
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rs928536913 2861 dbSNP
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rs1444085820 2864 dbSNP
rs759018480 2866 dbSNP
rs565769709 2869 dbSNP
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rs1182447293 2872 dbSNP
rs180672173 2881 dbSNP
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rs1038626856 2897 dbSNP
rs1245952219 2915 dbSNP
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rs1390866607 2933 dbSNP
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rs896646363 2955 dbSNP
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rs1218675899 2996 dbSNP
rs537224038 2999 dbSNP
rs555746541 3002 dbSNP
rs1287490178 3006 dbSNP
rs1210881425 3016 dbSNP
rs1362023170 3025 dbSNP
rs1295781902 3026 dbSNP
rs767919450 3034 dbSNP
rs1023765398 3038 dbSNP
rs573974920 3043 dbSNP
rs1348808710 3044 dbSNP
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rs1375814336 3053 dbSNP
rs1272025344 3062 dbSNP
rs900761757 3062 dbSNP
rs750786747 3069 dbSNP
rs1349561864 3070 dbSNP
rs1235407379 3074 dbSNP
rs1293953366 3075 dbSNP
rs1324454987 3080 dbSNP
rs1000219080 3085 dbSNP
rs1031161039 3087 dbSNP
rs1368490549 3095 dbSNP
rs1167682928 3097 dbSNP
rs958215909 3100 dbSNP
rs1450025560 3109 dbSNP
rs761131516 3115 dbSNP
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rs186129471 3117 dbSNP
rs956630094 3122 dbSNP
rs1224266310 3124 dbSNP
rs1275803141 3125 dbSNP
rs553836382 3126 dbSNP
rs572516376 3128 dbSNP
rs1030185426 3131 dbSNP
rs1204815142 3147 dbSNP
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rs1250092008 3154 dbSNP
rs1481845751 3162 dbSNP
rs1275454255 3168 dbSNP
rs970219814 3169 dbSNP
rs979753742 3180 dbSNP
rs1430128389 3182 dbSNP
rs954506198 3185 dbSNP
rs1368517501 3186 dbSNP
rs986909173 3195 dbSNP
rs1425264481 3199 dbSNP
rs1200912266 3210 dbSNP
rs1471419647 3212 dbSNP
rs928330606 3216 dbSNP
rs756501053 3217 dbSNP
rs911265442 3221 dbSNP
rs780290493 3223 dbSNP
rs749568692 3231 dbSNP
rs1263855042 3238 dbSNP
rs983804528 3239 dbSNP
rs964153488 3244 dbSNP
rs1421482525 3250 dbSNP
rs1327388643 3253 dbSNP
rs368755731 3265 dbSNP
rs547749956 3265 dbSNP
rs907697148 3279 dbSNP
rs941847535 3285 dbSNP
rs1300792173 3291 dbSNP
rs546013146 3293 dbSNP
rs930257238 3296 dbSNP
rs1416835030 3298 dbSNP
rs1047279714 3302 dbSNP
rs1178030945 3306 dbSNP
rs1455158839 3310 dbSNP
rs1335175755 3311 dbSNP
rs918086857 3313 dbSNP
rs1410854903 3317 dbSNP
rs949520958 3322 dbSNP
rs1037503310 3323 dbSNP
rs1253112154 3324 dbSNP
rs144520341 3325 dbSNP
rs932096327 3330 dbSNP
rs1000600417 3331 dbSNP
rs1463589143 3334 dbSNP
rs1267520931 3335 dbSNP
rs1051761687 3336 dbSNP
rs545090189 3341 dbSNP
rs576272624 3342 dbSNP
rs1343439210 3344 dbSNP
rs1053889936 3346 dbSNP
rs1310341692 3348 dbSNP
rs1227511280 3349 dbSNP
rs1379857586 3351 dbSNP
rs543599824 3352 dbSNP
rs562053292 3354 dbSNP
rs894075958 3365 dbSNP
rs1272891075 3374 dbSNP
rs190590144 3377 dbSNP
rs1011045248 3382 dbSNP
rs367865890 3388 dbSNP
rs779097751 3390 dbSNP
rs1009507685 3394 dbSNP
rs1023812307 3399 dbSNP
rs547393707 3401 dbSNP
rs1256499302 3402 dbSNP
rs1163165777 3417 dbSNP
rs1441488064 3421 dbSNP
rs1184702245 3422 dbSNP
rs1423589926 3424 dbSNP
rs1243381848 3430 dbSNP
rs1185977278 3433 dbSNP
rs1448131946 3437 dbSNP
rs1449975357 3439 dbSNP
rs763823162 3440 dbSNP
rs1487001221 3441 dbSNP
rs1388079926 3444 dbSNP
rs1220642910 3447 dbSNP
rs954538394 3448 dbSNP
rs1316826438 3451 dbSNP
rs980294879 3456 dbSNP
rs1226095337 3461 dbSNP
rs1035351646 3466 dbSNP
rs1364324268 3467 dbSNP
rs1231870069 3475 dbSNP
rs960000880 3486 dbSNP
rs1383381422 3490 dbSNP
rs983100560 3496 dbSNP
rs753610808 3498 dbSNP
rs564685437 3507 dbSNP
rs1292566714 3508 dbSNP
rs1388210690 3508 dbSNP
rs1458043826 3515 dbSNP
rs1366587481 3517 dbSNP
rs1165817081 3520 dbSNP
rs941953857 3522 dbSNP
rs973205873 3523 dbSNP
rs964499469 3527 dbSNP
rs921801018 3537 dbSNP
rs559052973 3550 dbSNP
rs1190845901 3554 dbSNP
rs1490556924 3562 dbSNP
rs1293715441 3569 dbSNP
rs1341414999 3577 dbSNP
rs1251810636 3589 dbSNP
rs748244832 3593 dbSNP
rs1254827099 3596 dbSNP
rs974174447 3598 dbSNP
rs1299910367 3610 dbSNP
rs146627050 3614 dbSNP
rs1052304048 3615 dbSNP
rs919941039 3618 dbSNP
rs76087995 3620 dbSNP
rs1305389721 3621 dbSNP
rs1396501758 3633 dbSNP
rs1168984402 3642 dbSNP
rs527296337 3646 dbSNP
rs935300381 3649 dbSNP
rs1052443652 3651 dbSNP
rs371635078 3655 dbSNP
rs1480901098 3657 dbSNP
rs894023748 3663 dbSNP
rs1179830118 3664 dbSNP
rs569767924 3675 dbSNP
rs1250895722 3724 dbSNP
rs1197487320 3726 dbSNP
rs918202974 3729 dbSNP
rs1254922905 3730 dbSNP
rs1223567269 3733 dbSNP
rs1011202434 3738 dbSNP
rs1045250855 3742 dbSNP
rs530769411 3757 dbSNP
rs1045660672 3779 dbSNP
rs556288473 3779 dbSNP
rs905389720 3784 dbSNP
rs936429595 3794 dbSNP
rs549160561 3796 dbSNP
rs1393681956 3799 dbSNP
rs1400633467 3800 dbSNP
rs1053519047 3805 dbSNP
rs1470340672 3809 dbSNP
rs200407867 3809 dbSNP
rs567571744 3810 dbSNP
rs1364196316 3811 dbSNP
rs1183656041 3812 dbSNP
rs1035826483 3816 dbSNP
rs959832637 3817 dbSNP
rs1051423296 3818 dbSNP
rs1004462913 3822 dbSNP
rs534578005 3823 dbSNP
rs1255781489 3825 dbSNP
rs1203827209 3826 dbSNP
rs553214697 3828 dbSNP
rs1014580890 3835 dbSNP
rs1320433884 3838 dbSNP
rs565966531 3839 dbSNP
rs973321475 3862 dbSNP
rs1187851975 3863 dbSNP
rs539815164 3883 dbSNP
rs1339291978 3889 dbSNP
rs771987881 3896 dbSNP
rs561920145 3897 dbSNP
rs777634147 3905 dbSNP
rs557871739 3909 dbSNP
rs746819073 3914 dbSNP
rs1376889058 3924 dbSNP
rs1400364681 3929 dbSNP
rs995998066 3935 dbSNP
rs1160564745 3940 dbSNP
rs770674697 3941 dbSNP
rs576087379 3949 dbSNP
rs935406188 3956 dbSNP
rs1384595854 3961 dbSNP
rs1052432913 3963 dbSNP
rs1318623313 3977 dbSNP
rs1446301200 3980 dbSNP
rs951458752 3983 dbSNP
rs764704146 3989 dbSNP
rs1207502687 3993 dbSNP
rs749970965 4008 dbSNP
rs1447274215 4009 dbSNP
rs776430273 4010 dbSNP
rs1207317355 4017 dbSNP
rs1354698733 4019 dbSNP
rs1314716644 4035 dbSNP
rs1247381758 4038 dbSNP
rs946939912 4039 dbSNP
rs182245913 4052 dbSNP
rs1045366077 4054 dbSNP
rs971413852 4058 dbSNP
rs1230596038 4060 dbSNP
rs1269705404 4065 dbSNP
rs1327314874 4070 dbSNP
rs1329436147 4077 dbSNP
rs1207489200 4084 dbSNP
rs143756226 4085 dbSNP
rs1364741678 4090 dbSNP
rs1004094446 4091 dbSNP
rs936816219 4095 dbSNP
rs1388227604 4099 dbSNP
rs1185475493 4101 dbSNP
rs1475455713 4102 dbSNP
rs1056635852 4107 dbSNP
rs769437244 4108 dbSNP
rs1210399351 4123 dbSNP
rs1196309306 4133 dbSNP
rs1266382671 4137 dbSNP
rs895551205 4138 dbSNP
rs1184241694 4142 dbSNP
rs1004621821 4147 dbSNP
rs1362271569 4148 dbSNP
rs774919216 4149 dbSNP
rs945108068 4167 dbSNP
rs1362766231 4169 dbSNP
rs1271938356 4176 dbSNP
rs963037209 4178 dbSNP
rs762507883 4190 dbSNP
rs1029296029 4193 dbSNP
rs890112994 4194 dbSNP
rs186874700 4198 dbSNP
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rs116216763 7769 dbSNP
rs1383216784 7777 dbSNP
rs1364208133 7781 dbSNP
rs1291022776 7797 dbSNP
rs1033072733 7805 dbSNP
rs1291838342 7813 dbSNP
rs957695638 7815 dbSNP
rs1436104151 7820 dbSNP
rs541647300 7821 dbSNP
rs1395488156 7828 dbSNP
rs1463884299 7834 dbSNP
rs1012912820 7835 dbSNP
rs1023428669 7837 dbSNP
rs971605958 7839 dbSNP
rs948767150 7847 dbSNP
rs113799434 7853 dbSNP
rs148249999 7860 dbSNP
rs1190105858 7863 dbSNP
rs1468692073 7865 dbSNP
rs904497033 7866 dbSNP
rs919523481 7867 dbSNP
rs34357474 7881 dbSNP
rs1476755593 7882 dbSNP
rs985367981 7893 dbSNP
rs7535067 7895 dbSNP
rs141242952 7896 dbSNP
rs1183584581 7900 dbSNP
rs1039369097 7905 dbSNP
rs1371750944 7909 dbSNP
rs920954653 7912 dbSNP
rs1423684018 7916 dbSNP
rs1051253493 7920 dbSNP
rs889560955 7927 dbSNP
rs1298510238 7928 dbSNP
rs1372588704 7930 dbSNP
rs933880547 7931 dbSNP
rs1175186413 7933 dbSNP
rs1368765480 7936 dbSNP
rs1410773360 7945 dbSNP
rs1438659948 7953 dbSNP
rs1006565351 7960 dbSNP
rs1016572584 7960 dbSNP
rs373834186 7965 dbSNP
rs755980188 7967 dbSNP
rs903118577 7979 dbSNP
rs1254781031 7983 dbSNP
rs1210739031 7995 dbSNP
rs562965793 8006 dbSNP
rs1026016833 8008 dbSNP
rs1450812993 8009 dbSNP
rs766354927 8010 dbSNP
rs893219535 8038 dbSNP
rs1013443979 8039 dbSNP
rs1307521834 8042 dbSNP
rs1392920460 8050 dbSNP
rs1399720197 8050 dbSNP
rs1312222014 8051 dbSNP
rs1244179101 8061 dbSNP
rs1435213653 8067 dbSNP
rs1376787342 8069 dbSNP
rs1300307332 8071 dbSNP
rs1156292272 8074 dbSNP
rs1022908972 8076 dbSNP
rs907183475 8087 dbSNP
rs1002848807 8095 dbSNP
rs189338015 8097 dbSNP
rs1421276547 8107 dbSNP
rs950974982 8110 dbSNP
rs548454066 8111 dbSNP
rs1486273989 8116 dbSNP
rs3814341 8117 dbSNP
rs1211617934 8121 dbSNP
rs962473779 8122 dbSNP
rs527953765 8130 dbSNP
rs181396114 8131 dbSNP
rs936018367 8152 dbSNP
rs1415373977 8155 dbSNP
rs116361440 8165 dbSNP
rs913496316 8166 dbSNP
rs570150572 8174 dbSNP
rs758148845 8175 dbSNP
rs924516461 8180 dbSNP
rs934614787 8197 dbSNP
rs1054279507 8199 dbSNP
rs1394615449 8203 dbSNP
rs1416187689 8207 dbSNP
rs892991628 8224 dbSNP
rs948595621 8226 dbSNP
rs1006596683 8234 dbSNP
rs529131199 8234 dbSNP
rs1044435281 8237 dbSNP
rs907301078 8239 dbSNP
rs1262468187 8242 dbSNP
rs1207159727 8246 dbSNP
rs1354479578 8249 dbSNP
rs1272391070 8252 dbSNP
rs1002796405 8253 dbSNP
rs996793488 8256 dbSNP
rs1336606153 8259 dbSNP
rs747568430 8270 dbSNP
rs1276254890 8271 dbSNP
rs186023865 8278 dbSNP
rs150851948 8281 dbSNP
rs1319696505 8287 dbSNP
rs1384780204 8289 dbSNP
rs1339098724 8293 dbSNP
rs1393267825 8300 dbSNP
rs1326080469 8303 dbSNP
rs1026306568 8315 dbSNP
rs886689674 8316 dbSNP
rs1462304518 8321 dbSNP
rs1006908255 8325 dbSNP
rs1013476025 8326 dbSNP
rs1227695527 8334 dbSNP
rs1016419490 8335 dbSNP
rs965210972 8339 dbSNP
rs568021046 8341 dbSNP
rs974954353 8343 dbSNP
rs1467142207 8360 dbSNP
rs550489989 8366 dbSNP
rs1252626201 8369 dbSNP
rs41263684 8376 dbSNP
rs957422288 8379 dbSNP
rs1263253311 8398 dbSNP
rs1460792399 8403 dbSNP
rs746528085 8407 dbSNP
rs986463653 8410 dbSNP
rs989245773 8411 dbSNP
rs1369534085 8412 dbSNP
rs1326191902 8415 dbSNP
rs1442595781 8431 dbSNP
rs553654772 8433 dbSNP
rs1327242232 8436 dbSNP
rs1409954278 8438 dbSNP
rs934253821 8439 dbSNP
rs924298960 8457 dbSNP
rs777097554 8460 dbSNP
rs1394515848 8462 dbSNP
rs990445085 8466 dbSNP
rs1455730594 8469 dbSNP
rs866398811 8480 dbSNP
rs911397972 8483 dbSNP
rs914514032 8494 dbSNP
rs948521985 8495 dbSNP
rs572320326 8496 dbSNP
rs1275038207 8508 dbSNP
rs1371503738 8513 dbSNP
rs536099986 8517 dbSNP
rs1346561961 8518 dbSNP
rs1303460094 8522 dbSNP
rs190091469 8525 dbSNP
rs1047702255 8527 dbSNP
rs929729125 8539 dbSNP
rs749582134 8556 dbSNP
rs1336675838 8559 dbSNP
rs896131016 8573 dbSNP
rs1006232855 8576 dbSNP
rs1013925439 8576 dbSNP
rs1433368615 8576 dbSNP
rs1374981132 8586 dbSNP
rs1323222143 8588 dbSNP
rs769112818 8589 dbSNP
rs35414293 8590 dbSNP
rs1023525805 8594 dbSNP
rs1176770280 8599 dbSNP
rs138276703 8604 dbSNP
rs1234352711 8608 dbSNP
rs1000723138 8623 dbSNP
rs1038333517 8624 dbSNP
rs1485290519 8631 dbSNP
rs900754966 8634 dbSNP
rs577357449 8638 dbSNP
rs957699176 8640 dbSNP
rs1314554487 8647 dbSNP
rs1283147278 8648 dbSNP
rs1030545527 8649 dbSNP
rs774601325 8658 dbSNP
rs1355385274 8661 dbSNP
rs1406432263 8667 dbSNP
rs988887059 8668 dbSNP
rs1283341641 8669 dbSNP
rs1020706311 8673 dbSNP
rs1008012370 8687 dbSNP
rs1031435690 8688 dbSNP
rs1409950545 8697 dbSNP
rs375392412 8698 dbSNP
rs544609732 8702 dbSNP
rs1474877785 8710 dbSNP
rs911514454 8713 dbSNP
rs1189919092 8717 dbSNP
rs942938167 8717 dbSNP
rs1484625454 8736 dbSNP
rs1204287148 8752 dbSNP
rs1240983241 8755 dbSNP
rs1216126552 8757 dbSNP
rs1318340576 8764 dbSNP
rs1270498537 8766 dbSNP
rs142806013 8771 dbSNP
rs1334552432 8780 dbSNP
rs989835564 8786 dbSNP
rs1294463074 8787 dbSNP
rs974242364 8794 dbSNP
rs1288339514 8810 dbSNP
rs920066869 8818 dbSNP
rs1453525470 8822 dbSNP
rs1324055599 8829 dbSNP
rs929734546 8831 dbSNP
rs1167067616 8832 dbSNP
rs1046773672 8839 dbSNP
rs1200493861 8855 dbSNP
rs896150822 8860 dbSNP
rs914441364 8869 dbSNP
rs970035465 8874 dbSNP
rs1186591300 8876 dbSNP
rs761982111 8877 dbSNP
rs574793631 8880 dbSNP
rs928493818 8886 dbSNP
rs772285021 8892 dbSNP
rs1453708995 8902 dbSNP
rs1047775319 8907 dbSNP
rs1274161007 8916 dbSNP
rs1393394096 8918 dbSNP
rs1306254071 8928 dbSNP
rs905137878 8931 dbSNP
rs907969076 8932 dbSNP
rs773220993 8942 dbSNP
rs1000754210 8959 dbSNP
rs762244086 8967 dbSNP
rs77817149 8971 dbSNP
rs181367649 8972 dbSNP
rs1020400811 8979 dbSNP
rs996456844 8989 dbSNP
rs1308553829 8997 dbSNP
rs955641871 8998 dbSNP
rs1429803520 8999 dbSNP
rs1392674735 9001 dbSNP
rs527873379 9002 dbSNP
rs1192657544 9006 dbSNP
rs1336248026 9013 dbSNP
rs986786725 9020 dbSNP
rs1018218376 9021 dbSNP
rs552481090 9023 dbSNP
rs1051921595 9029 dbSNP
rs1211996230 9035 dbSNP
rs890602009 9039 dbSNP
rs1251256786 9052 dbSNP
rs77946539 9063 dbSNP
rs1031799720 9068 dbSNP
rs1258730170 9074 dbSNP
rs974275104 9081 dbSNP
rs920092300 9088 dbSNP
rs1233919444 9109 dbSNP
rs1371999705 9110 dbSNP
rs1303597009 9111 dbSNP
rs1389479048 9112 dbSNP
rs1372286114 9114 dbSNP
rs930128614 9125 dbSNP
rs1298705081 9130 dbSNP
rs1361416453 9136 dbSNP
rs1431512021 9142 dbSNP
rs1373141012 9145 dbSNP
rs983349093 9148 dbSNP
rs1435018610 9151 dbSNP
rs917695976 9152 dbSNP
rs531213709 9153 dbSNP
rs1489926837 9155 dbSNP
rs1011652847 9156 dbSNP
rs1484315888 9159 dbSNP
rs1278372892 9162 dbSNP
rs1210262814 9171 dbSNP
rs1266402136 9174 dbSNP
rs12652 9177 dbSNP
rs865834711 9179 dbSNP
rs969929849 9183 dbSNP
rs1251386792 9186 dbSNP
rs1418981706 9196 dbSNP
rs1316158775 9200 dbSNP
rs766223086 9203 dbSNP
rs926252891 9204 dbSNP
rs1370557864 9205 dbSNP
rs1411645370 9207 dbSNP
rs186014627 9217 dbSNP
rs753854485 9229 dbSNP
rs1353479094 9230 dbSNP
rs1312127566 9234 dbSNP
rs535165524 9239 dbSNP
rs936573651 9243 dbSNP
rs146059621 9244 dbSNP
rs928568072 9257 dbSNP
rs959839657 9262 dbSNP
rs1009441975 9263 dbSNP
rs565765242 9267 dbSNP
rs1187794169 9268 dbSNP
rs907915826 9269 dbSNP
rs539638582 9271 dbSNP
rs963975527 9272 dbSNP
rs558123460 9273 dbSNP
rs1332335984 9286 dbSNP
rs41263686 9291 dbSNP
rs1233782264 9297 dbSNP
rs1341796509 9308 dbSNP
rs8972 9310 dbSNP
rs190639297 9314 dbSNP
rs556256277 9316 dbSNP
rs1246374074 9320 dbSNP
rs1051996645 9324 dbSNP
rs77231029 9331 dbSNP
rs751107355 9333 dbSNP
rs1261034042 9336 dbSNP
rs1459174614 9341 dbSNP
rs1416086470 9348 dbSNP
rs182929885 9349 dbSNP
rs1251951263 9356 dbSNP
rs1473401965 9366 dbSNP
rs541995632 9367 dbSNP
rs1194155501 9368 dbSNP
rs1052652633 9369 dbSNP
rs756828529 9370 dbSNP
rs918048322 9374 dbSNP
rs1245457898 9376 dbSNP
rs970482554 9380 dbSNP
rs1210771707 9382 dbSNP
rs1466995446 9384 dbSNP
rs980476845 9387 dbSNP
rs1214308180 9397 dbSNP
rs1383832137 9400 dbSNP
rs1268276922 9402 dbSNP
rs554219246 9414 dbSNP
rs1226071627 9421 dbSNP
rs1326448695 9423 dbSNP
rs926284002 9436 dbSNP
rs1172173856 9437 dbSNP
rs1392806902 9442 dbSNP
rs1325639923 9446 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000235307.6 | 3UTR | AUACCUCUUACAAACUUUACCUCAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE38974 Chronic obstructive pulmonary disease 0.616 5.2e-4 0.625 4.2e-4 25 Click to see details
GSE21849 B cell lymphoma 0.477 4.4e-3 0.583 4.5e-4 29 Click to see details
GSE28260 Renal cortex and medulla 0.623 1.1e-2 0.615 1.3e-2 13 Click to see details
GSE17498 Multiple myeloma 0.303 2.9e-2 0.317 2.3e-2 40 Click to see details
GSE38226 Liver fibrosis 0.384 4.3e-2 0.356 5.7e-2 21 Click to see details
GSE26953 Aortic valvular endothelial cells -0.29 8.5e-2 -0.278 9.4e-2 24 Click to see details
GSE42095 Differentiated embryonic stem cells 0.272 1.0e-1 0.374 3.9e-2 23 Click to see details
GSE14794 Lymphoblastoid cells 0.118 1.3e-1 0.103 1.7e-1 90 Click to see details
GSE15076 Monocyte-derived dendritic cells 0.37 1.8e-1 0.500