miRTarBase - #MIRT270950


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pre-miRNA Information
pre-miRNA hsa-mir-5197   
Genomic Coordinates chr5: 143679860 - 143679971
Description Homo sapiens miR-5197 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-5197-3p
Sequence 64| AAGAAGAGACUGAGUCAUCGAAU |86
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs77549240 8 dbSNP
rs1411653302 10 dbSNP
rs1347866830 14 dbSNP
rs892818585 19 dbSNP
rs1405555825 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol GPRC5A   
Synonyms GPCR5A, PEIG-1, RAI3, RAIG1, TIG1
Description G protein-coupled receptor class C group 5 member A
Transcript NM_003979   
Expression
Putative miRNA Targets on GPRC5A
3'UTR of GPRC5A
(miRNA target sites are highlighted)		 
>GPRC5A|NM_003979|3'UTR
   1 CTCTGTCCTGAAGAGTGGGACAAATGCAGCCGGGCGGCAGATCTAGCGGGAGCTCAAAGGGATGTGGGCGAAATCTTGAG
  81 TCTTCTGAGAAAACTGTACAAGACACTACGGGAACAGTTTGCCTCCCTCCCAGCCTCAACCACAATTCTTCCATGCTGGG
 161 GCTGATGTGGGCTAGTAAGACTCCAGTTCTTAGAGGCGCTGTAGTATTTTTTTTTTTTTGTCTCATCCTTTGGATACTTC
 241 TTTTAAGTGGGAGTCTCAGGCAACTCAAGTTTAGACCCTTACTCTTTTTGTTTGTTTTTTGAAACAGGATCTTGCTCTGT
 321 CACCCAGGCTTGAGTGCAGTGGTGCGATCACAGCCCAGTGCAGCCTCGACCACCTGTGCTCAAGCAATCCTCCCATCTCC
 401 ATCTCCCAAAGTGCTGGGATGACAGGCGTGAGCCACAGCTCCCAGCCTAGGCCCTTAATCTTGCTGTTATTTTCCATGGA
 481 CTAAAGGTCTGGTCATCTGAGCTCACGCTGGCTCACACAGCTCTAGGGGCCTGCTCCTCTAACTCACAGTGGGTTTTGTG
 561 AGGCTCTGTGGCCCAGAGCAGACCTGCATATCTGAGCAAAAATAGCAAAAGCCTCTCTCAGCCCACTGGCCTGAATCTAC
 641 ACTGGAAGCCAACTTGCTGGCACCCCCGCTCCCCAACCCTTCTTGCCTGGGTAGGAGAGGCTAAAGATCACCCTAAATTT
 721 ACTCATCTCTCTAGTGCTGCCTCACATTGGGCCTCAGCAGCTCCCCAGCACCAATTCACAGGTCACCCCTCTCTTCTTGC
 801 ACTGTCCCCAAACTTGCTGTCAATTCCGAGATCTAATCTCCCCCTACGCTCTGCCAGGAATTCTTTCAGACCTCACTAGC
 881 ACAAGCCCGGTTGCTCCTTGTCAGGAGAATTTGTAGATCATTCTCACTTCAAATTCCTGGGGCTGATACTTCTCTCATCT
 961 TGCACCCCAACCTCTGTAAATAGATTTACCGCATTTACGGCTGCATTCTGTAAGTGGGCATGGTCTCCTAATGGAGGAGT
1041 GTTCATTGTATAATAAGTTATTCACCTGAGTATGCAATAAAGATGTGGTGGCCACTCTTTCATGGTGGTGGCAGCAGTTA
1121 CCAGTAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uaagCUACUGAGUCAGAGAAGAa 5'
              |:| || |  |||||||| 
Target 5' cacaGGTCAC-CCCTCTCTTCTt 3'
 777 - 798 154.00 -13.20
2 
miRNA  3' uaagcuaCUGAGUCAGAGAAGAa 5'
                 ||| |   |||||:| 
Target 5' aagtttaGACCCTTACTCTTTTt 3'
 267 - 289 132.00 -9.10
3 
miRNA  3' uaaGCUACUGAGUCAGAGAAGAa 5'
             :||| |||:  |||| ||| 
Target 5' ggcTGAT-ACTT-CTCTCATCTt 3'
 941 - 961 126.00 -10.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30498325 48 COSMIC
COSN31613457 63 COSMIC
COSN26977942 70 COSMIC
COSN30451653 112 COSMIC
COSN30109092 135 COSMIC
COSN31554219 199 COSMIC
COSN18922013 220 COSMIC
COSN27242160 220 COSMIC
COSN30175903 507 COSMIC
COSN2486705 587 COSMIC
COSN28640311 627 COSMIC
COSN26640357 634 COSMIC
COSN31588823 706 COSMIC
COSN28684551 748 COSMIC
COSN31483149 756 COSMIC
COSN10101166 798 COSMIC
COSN27748628 806 COSMIC
COSN24156087 955 COSMIC
COSN17307133 1248 COSMIC
COSN20820117 1293 COSMIC
COSN22155852 1322 COSMIC
COSN16223990 2006 COSMIC
COSN20381515 2007 COSMIC
COSN31881824 2010 COSMIC
COSN26369673 2013 COSMIC
COSN17984739 2015 COSMIC
COSN28001837 2059 COSMIC
COSN18009567 2060 COSMIC
COSN18010748 2064 COSMIC
COSN18858583 2084 COSMIC
COSN22447742 2120 COSMIC
COSN1144797 2479 COSMIC
COSN18759559 2500 COSMIC
COSN29051844 2500 COSMIC
COSN17576239 2548 COSMIC
COSN4898463 2602 COSMIC
COSN21484050 2650 COSMIC
COSN7317429 2957 COSMIC
COSN30121293 3174 COSMIC
COSN7317433 3227 COSMIC
COSN513452 3258 COSMIC
COSN513453 3268 COSMIC
COSN30472261 3273 COSMIC
COSN30493641 3301 COSMIC
COSN30146989 3306 COSMIC
COSN32067916 3336 COSMIC
COSN26977944 3339 COSMIC
COSN26977946 3347 COSMIC
COSN20077616 3348 COSMIC
COSN23013609 3379 COSMIC
COSN23013610 3380 COSMIC
COSN2376587 3382 COSMIC
COSN30478856 3405 COSMIC
COSN30470428 3411 COSMIC
COSN28869042 3417 COSMIC
COSN2381456 3423 COSMIC
COSN30518913 3445 COSMIC
COSN16364482 3861 COSMIC
COSN1563500 3868 COSMIC
COSN1563501 3879 COSMIC
COSN19101395 3972 COSMIC
COSN15089237 3997 COSMIC
COSN16774767 4295 COSMIC
COSN7317439 4369 COSMIC
COSN5935538 4439 COSMIC
COSN18769038 4709 COSMIC
COSN28986286 4714 COSMIC
COSN7317444 4714 COSMIC
COSN25815656 5005 COSMIC
COSN15202862 5202 COSMIC
rs1061036 232 GWAS
rs1148732 2819 GWAS
rs1640875 4052 GWAS
rs1056927 5280 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1398606523 18 dbSNP
rs779961481 19 dbSNP
rs768734284 20 dbSNP
rs774345296 23 dbSNP
rs1219468638 24 dbSNP
rs564145806 25 dbSNP
rs772132348 31 dbSNP
rs879079869 32 dbSNP
rs200040454 33 dbSNP
rs549791787 36 dbSNP
rs767063823 37 dbSNP
rs776926183 45 dbSNP
rs777267333 47 dbSNP
rs760065967 48 dbSNP
rs368159889 49 dbSNP
rs750995777 51 dbSNP
rs1039703754 58 dbSNP
rs1465435225 59 dbSNP
rs1421883000 60 dbSNP
rs188054206 62 dbSNP
rs1323826565 70 dbSNP
rs1373012920 71 dbSNP
rs998415374 82 dbSNP
rs1405701359 85 dbSNP
rs1453028624 93 dbSNP
rs1049919711 97 dbSNP
rs1194839228 99 dbSNP
rs1315865632 104 dbSNP
rs547332565 108 dbSNP
rs565881714 110 dbSNP
rs575847254 111 dbSNP
rs903441305 114 dbSNP
rs536257899 116 dbSNP
rs1399935842 118 dbSNP
rs1054446325 130 dbSNP
rs893232077 132 dbSNP
rs1032124554 145 dbSNP
rs1446257777 154 dbSNP
rs1211205108 158 dbSNP
rs1333746504 160 dbSNP
rs1013022346 162 dbSNP
rs1425061567 169 dbSNP
rs1171277520 170 dbSNP
rs1478744439 172 dbSNP
rs1377651931 173 dbSNP
rs1012358678 174 dbSNP
rs1023028949 175 dbSNP
rs569799739 178 dbSNP
rs1239849958 197 dbSNP
rs1199025320 198 dbSNP
rs1274501458 202 dbSNP
rs1276424307 205 dbSNP
rs1460661467 205 dbSNP
rs1470263608 205 dbSNP
rs111900693 207 dbSNP
rs1376788657 207 dbSNP
rs371673418 207 dbSNP
rs796902751 207 dbSNP
rs1447998334 215 dbSNP
rs386760505 220 dbSNP
rs1010725316 221 dbSNP
rs7311670 222 dbSNP
rs1261518728 223 dbSNP
rs1416636608 224 dbSNP
rs1427064803 225 dbSNP
rs1195624710 226 dbSNP
rs1023265198 227 dbSNP
rs1061036 232 dbSNP
rs1381794722 233 dbSNP
rs1460994974 234 dbSNP
rs1178797012 235 dbSNP
rs1235471490 236 dbSNP
rs1640874 237 dbSNP
rs1162964927 241 dbSNP
rs971229153 249 dbSNP
rs1442902710 259 dbSNP
rs1281206948 260 dbSNP
rs1002670871 263 dbSNP
rs1351522528 269 dbSNP
rs1288429982 271 dbSNP
rs535337418 273 dbSNP
rs553359167 278 dbSNP
rs1319774115 287 dbSNP
rs974175198 290 dbSNP
rs1359645266 301 dbSNP
rs919584727 310 dbSNP
rs578142497 311 dbSNP
rs1417328745 313 dbSNP
rs953812703 324 dbSNP
rs985182271 334 dbSNP
rs1404367360 338 dbSNP
rs1444454265 342 dbSNP
rs528293764 346 dbSNP
rs944914490 347 dbSNP
rs1278333338 348 dbSNP
rs1339572664 353 dbSNP
rs1262401383 357 dbSNP
rs1231059887 358 dbSNP
rs983899230 359 dbSNP
rs192688455 364 dbSNP
rs564206991 368 dbSNP
rs369565365 369 dbSNP
rs79365348 371 dbSNP
rs1040119674 392 dbSNP
rs1260594973 396 dbSNP
rs770720288 412 dbSNP
rs543494779 414 dbSNP
rs561674825 417 dbSNP
rs934257091 424 dbSNP
rs143950868 428 dbSNP
rs144394455 429 dbSNP
rs1347743954 431 dbSNP
rs1166398816 434 dbSNP
rs559364398 448 dbSNP
rs1422601582 449 dbSNP
rs1168510236 455 dbSNP
rs907286047 455 dbSNP
rs533187110 466 dbSNP
rs1475554247 467 dbSNP
rs893554064 470 dbSNP
rs1343303978 476 dbSNP
rs74668831 477 dbSNP
rs1245209075 478 dbSNP
rs961615804 481 dbSNP
rs373741742 491 dbSNP
rs569862928 507 dbSNP
rs537151658 508 dbSNP
rs1217376254 509 dbSNP
rs1027282208 523 dbSNP
rs34043473 524 dbSNP
rs953740507 528 dbSNP
rs767482237 533 dbSNP
rs376764902 535 dbSNP
rs1003605527 540 dbSNP
rs1436725881 545 dbSNP
rs567669121 548 dbSNP
rs1019355092 557 dbSNP
rs951295780 558 dbSNP
rs115287864 565 dbSNP
rs553659680 570 dbSNP
rs1424268912 572 dbSNP
rs16908517 579 dbSNP
rs1432708200 592 dbSNP
rs1423093862 593 dbSNP
rs1193190805 597 dbSNP
rs776685449 606 dbSNP
rs539282512 620 dbSNP
rs922609876 625 dbSNP
rs1459325184 626 dbSNP
rs1252409723 630 dbSNP
rs761937336 643 dbSNP
rs116793302 644 dbSNP
rs914771517 648 dbSNP
rs977402855 649 dbSNP
rs1234657996 662 dbSNP
rs1375679793 665 dbSNP
rs924897222 668 dbSNP
rs948741496 669 dbSNP
rs1464466712 670 dbSNP
rs1044408732 678 dbSNP
rs369528084 680 dbSNP
rs550109519 680 dbSNP
rs868019686 683 dbSNP
rs868336480 687 dbSNP
rs1454912401 688 dbSNP
rs907315531 701 dbSNP
rs938731462 705 dbSNP
rs564839701 717 dbSNP
rs1441964047 723 dbSNP
rs148810313 725 dbSNP
rs1181831571 726 dbSNP
rs1482560948 730 dbSNP
rs750588794 732 dbSNP
rs995707427 735 dbSNP
rs1210996062 737 dbSNP
rs1352255855 740 dbSNP
rs1283483170 746 dbSNP
rs1061047 748 dbSNP
rs1311706506 762 dbSNP
rs1394284031 768 dbSNP
rs561086266 769 dbSNP
rs766747365 778 dbSNP
rs1313345494 781 dbSNP
rs555471973 789 dbSNP
rs879086256 792 dbSNP
rs1420854614 797 dbSNP
rs1359935012 798 dbSNP
rs1159702864 802 dbSNP
rs141571845 809 dbSNP
rs184932883 810 dbSNP
rs1019218764 828 dbSNP
rs1364805088 829 dbSNP
rs964989111 834 dbSNP
rs977822235 835 dbSNP
rs1164505954 841 dbSNP
rs1005387749 842 dbSNP
rs868165363 843 dbSNP
rs559640876 847 dbSNP
rs150831583 848 dbSNP
rs117588607 849 dbSNP
rs1260382794 876 dbSNP
rs963886102 888 dbSNP
rs1350933174 889 dbSNP
rs563153939 889 dbSNP
rs914865825 890 dbSNP
rs1242355176 891 dbSNP
rs1296009162 898 dbSNP
rs139482862 901 dbSNP
rs1029771233 908 dbSNP
rs755540516 917 dbSNP
rs1308290478 928 dbSNP
rs955642066 932 dbSNP
rs977455101 935 dbSNP
rs1384195578 937 dbSNP
rs1347641044 944 dbSNP
rs144308510 947 dbSNP
rs936255134 948 dbSNP
rs1166355340 950 dbSNP
rs1282745930 958 dbSNP
rs1420921832 963 dbSNP
rs1195193005 969 dbSNP
rs1447016880 971 dbSNP
rs990371174 981 dbSNP
rs189812695 982 dbSNP
rs948936432 988 dbSNP
rs938629231 991 dbSNP
rs781779971 992 dbSNP
rs906316109 999 dbSNP
rs748680348 1000 dbSNP
rs1231291439 1011 dbSNP
rs1279954731 1014 dbSNP
rs1229709821 1025 dbSNP
rs1481634574 1031 dbSNP
rs1177732031 1041 dbSNP
rs1252233142 1048 dbSNP
rs1327060765 1049 dbSNP
rs897228935 1051 dbSNP
rs1385289166 1052 dbSNP
rs1061058 1065 dbSNP
rs755621238 1066 dbSNP
rs1326993991 1067 dbSNP
rs939068498 1069 dbSNP
rs1170078118 1070 dbSNP
rs146078800 1074 dbSNP
rs546671485 1077 dbSNP
rs1376526061 1082 dbSNP
rs1046720100 1085 dbSNP
rs1006778208 1088 dbSNP
rs1064885 1095 dbSNP
rs1434510926 1098 dbSNP
rs777457316 1101 dbSNP
rs1167844289 1103 dbSNP
rs192254879 1119 dbSNP
rs1456228443 1123 dbSNP
rs1259953741 1124 dbSNP
rs1019459649 1132 dbSNP
rs1340214459 1133 dbSNP
rs1231428665 1135 dbSNP
rs1442240370 1136 dbSNP
rs539348545 1141 dbSNP
rs1373447587 1143 dbSNP
rs1332646929 1156 dbSNP
rs557652474 1157 dbSNP
rs748922274 1158 dbSNP
rs569493983 1162 dbSNP
rs999109994 1174 dbSNP
rs1410995991 1183 dbSNP
rs1400917934 1185 dbSNP
rs536818824 1186 dbSNP
rs1038321776 1190 dbSNP
rs899729745 1198 dbSNP
rs1395314789 1199 dbSNP
rs555472763 1220 dbSNP
rs1177578050 1224 dbSNP
rs1030791691 1246 dbSNP
rs996732550 1247 dbSNP
rs1437975821 1250 dbSNP
rs573644556 1252 dbSNP
rs770537914 1253 dbSNP
rs567312655 1257 dbSNP
rs1029902659 1261 dbSNP
rs1441767953 1273 dbSNP
rs1278081137 1276 dbSNP
rs1368707432 1277 dbSNP
rs1214236721 1281 dbSNP
rs1281341794 1282 dbSNP
rs139307422 1287 dbSNP
rs552698438 1288 dbSNP
rs1281606267 1289 dbSNP
rs577179326 1293 dbSNP
rs544918792 1317 dbSNP
rs563216750 1318 dbSNP
rs980364152 1323 dbSNP
rs1467130990 1327 dbSNP
rs928831359 1332 dbSNP
rs1031689236 1338 dbSNP
rs867494754 1350 dbSNP
rs530648450 1354 dbSNP
rs1417452632 1359 dbSNP
rs973136176 1360 dbSNP
rs1158920134 1364 dbSNP
rs1472308320 1365 dbSNP
rs1474938956 1370 dbSNP
rs1235665845 1388 dbSNP
rs918705978 1389 dbSNP
rs1189924825 1402 dbSNP
rs916202863 1411 dbSNP
rs931370009 1412 dbSNP
rs1315345385 1419 dbSNP
rs1421130813 1426 dbSNP
rs543234428 1429 dbSNP
rs1048450536 1430 dbSNP
rs911067076 1436 dbSNP
rs1356042228 1437 dbSNP
rs1391622908 1443 dbSNP
rs774164504 1446 dbSNP
rs1328466256 1448 dbSNP
rs1235658206 1452 dbSNP
rs1355590610 1457 dbSNP
rs868264641 1460 dbSNP
rs745714650 1462 dbSNP
rs542400045 1464 dbSNP
rs561476481 1465 dbSNP
rs79665794 1481 dbSNP
rs547027735 1486 dbSNP
rs1430380866 1500 dbSNP
rs1397817649 1518 dbSNP
rs750583791 1519 dbSNP
rs1046773223 1520 dbSNP
rs1404578017 1522 dbSNP
rs1411296072 1523 dbSNP
rs1167072433 1533 dbSNP
rs908289617 1549 dbSNP
rs1418748527 1557 dbSNP
rs1193023743 1558 dbSNP
rs1244090568 1560 dbSNP
rs536932198 1560 dbSNP
rs73066794 1562 dbSNP
rs1038442479 1584 dbSNP
rs775345091 1585 dbSNP
rs1235751911 1586 dbSNP
rs1278064492 1591 dbSNP
rs1336095385 1591 dbSNP
rs997134668 1594 dbSNP
rs144121616 1601 dbSNP
rs1270430310 1603 dbSNP
rs1052518511 1608 dbSNP
rs144995196 1612 dbSNP
rs1290449109 1613 dbSNP
rs1461950763 1615 dbSNP
rs1446230042 1628 dbSNP
rs1426839032 1639 dbSNP
rs760608546 1640 dbSNP
rs1421715955 1648 dbSNP
rs1243631253 1652 dbSNP
rs1187371551 1659 dbSNP
rs1477822040 1664 dbSNP
rs74060974 1676 dbSNP
rs998675601 1677 dbSNP
rs1469135556 1687 dbSNP
rs1258010017 1689 dbSNP
rs1186741392 1693 dbSNP
rs1415060319 1703 dbSNP
rs1475873657 1707 dbSNP
rs532318204 1708 dbSNP
rs1218346034 1712 dbSNP
rs76729372 1720 dbSNP
rs1305100115 1724 dbSNP
rs1441373017 1731 dbSNP
rs1011608577 1734 dbSNP
rs1329286052 1736 dbSNP
rs1463435599 1740 dbSNP
rs1356422543 1745 dbSNP
rs184659872 1750 dbSNP
rs1035978107 1752 dbSNP
rs149120670 1763 dbSNP
rs189372806 1766 dbSNP
rs1195685794 1771 dbSNP
rs918601231 1773 dbSNP
rs952713719 1774 dbSNP
rs984618251 1777 dbSNP
rs182065357 1785 dbSNP
rs577242017 1797 dbSNP
rs1040849314 1799 dbSNP
rs1345030663 1800 dbSNP
rs184299288 1807 dbSNP
rs1234543187 1813 dbSNP
rs1352769376 1826 dbSNP
rs763206870 1832 dbSNP
rs766581280 1833 dbSNP
rs556874314 1839 dbSNP
rs575179244 1840 dbSNP
rs1302128384 1842 dbSNP
rs893478758 1843 dbSNP
rs189493419 1845 dbSNP
rs1044874819 1851 dbSNP
rs74060975 1864 dbSNP
rs1380142873 1873 dbSNP
rs1157355759 1877 dbSNP
rs1038049338 1882 dbSNP
rs1251874796 1885 dbSNP
rs572955895 1893 dbSNP
rs547337466 1899 dbSNP
rs1051482115 1912 dbSNP
rs1487751335 1913 dbSNP
rs895961242 1919 dbSNP
rs934517734 1931 dbSNP
rs755339455 1937 dbSNP
rs893232195 1942 dbSNP
rs1012034193 1944 dbSNP
rs768000320 1956 dbSNP
rs753218405 1958 dbSNP
rs1314830837 1961 dbSNP
rs1188128010 1962 dbSNP
rs1384542098 1966 dbSNP
rs1415686539 1966 dbSNP
rs1362690725 1967 dbSNP
rs1022985599 1968 dbSNP
rs1455703586 1968 dbSNP
rs199920518 1968 dbSNP
rs1025861100 1969 dbSNP
rs1035929586 1971 dbSNP
rs1206481147 1972 dbSNP
rs76975526 1974 dbSNP
rs565356647 1975 dbSNP
rs113165777 1976 dbSNP
rs1420642894 1977 dbSNP
rs1293766986 1979 dbSNP
rs1194110785 1984 dbSNP
rs1233982101 1984 dbSNP
rs964084298 1985 dbSNP
rs976578714 1986 dbSNP
rs1384105659 1991 dbSNP
rs1396675575 1991 dbSNP
rs56862233 1993 dbSNP
rs1386217109 1999 dbSNP
rs1325636731 2002 dbSNP
rs367771973 2002 dbSNP
rs1416851615 2003 dbSNP
rs61531714 2003 dbSNP
rs58092585 2005 dbSNP
rs1166239047 2006 dbSNP
rs1173318631 2006 dbSNP
rs1397333539 2006 dbSNP
rs71448868 2006 dbSNP
rs922459986 2006 dbSNP
rs1194925222 2007 dbSNP
rs1370815368 2007 dbSNP
rs1474810383 2007 dbSNP
rs1335001732 2008 dbSNP
rs1428739834 2008 dbSNP
rs879894239 2010 dbSNP
rs935152254 2010 dbSNP
rs1178015695 2011 dbSNP
rs1253371560 2011 dbSNP
rs1394103915 2011 dbSNP
rs1455439039 2011 dbSNP
rs371632945 2011 dbSNP
rs775077752 2011 dbSNP
rs988473365 2011 dbSNP
rs397967131 2013 dbSNP
rs58381355 2014 dbSNP
rs1623550 2015 dbSNP
rs946407513 2016 dbSNP
rs1232346588 2017 dbSNP
rs1304615511 2018 dbSNP
rs1350549103 2018 dbSNP
rs1044738047 2019 dbSNP
rs1331382375 2020 dbSNP
rs1391493450 2021 dbSNP
rs1374271600 2022 dbSNP
rs974199562 2023 dbSNP
rs1436193626 2024 dbSNP
rs904964491 2025 dbSNP
rs1395520847 2026 dbSNP
rs921009365 2027 dbSNP
rs1468350830 2028 dbSNP
rs1365499423 2030 dbSNP
rs1439970271 2030 dbSNP
rs1256863984 2031 dbSNP
rs1209074494 2032 dbSNP
rs1281162684 2032 dbSNP
rs374047427 2034 dbSNP
rs1281231288 2036 dbSNP
rs1223580624 2038 dbSNP
rs1281801433 2038 dbSNP
rs932332948 2038 dbSNP
rs984432433 2039 dbSNP
rs1354164472 2040 dbSNP
rs1310527662 2042 dbSNP
rs1416029226 2042 dbSNP
rs201244280 2042 dbSNP
rs907517720 2043 dbSNP
rs1317150248 2044 dbSNP
rs1375685083 2044 dbSNP
rs1159120284 2046 dbSNP
rs1234018017 2046 dbSNP
rs1386846619 2046 dbSNP
rs1398762763 2046 dbSNP
rs1185918874 2048 dbSNP
rs1417312996 2048 dbSNP
rs1474840130 2048 dbSNP
rs1476191209 2049 dbSNP
rs1238303315 2050 dbSNP
rs749109860 2050 dbSNP
rs770689611 2050 dbSNP
rs1445686910 2051 dbSNP
rs1234627119 2052 dbSNP
rs1491189860 2052 dbSNP
rs375254963 2052 dbSNP
rs1355484371 2053 dbSNP
rs373481721 2054 dbSNP
rs1428174941 2055 dbSNP
rs1491262104 2055 dbSNP
rs10845669 2056 dbSNP
rs1169409765 2056 dbSNP
rs1421953149 2056 dbSNP
rs1454145358 2056 dbSNP
rs777155606 2056 dbSNP
rs879783764 2056 dbSNP
rs71904005 2057 dbSNP
rs1345520407 2058 dbSNP
rs773819910 2058 dbSNP
rs1349671546 2059 dbSNP
rs59721062 2059 dbSNP
rs1631459 2060 dbSNP
rs1392881282 2061 dbSNP
rs868673424 2062 dbSNP
rs61912342 2064 dbSNP
rs1170471278 2066 dbSNP
rs61912343 2068 dbSNP
rs1180320340 2069 dbSNP
rs1240510890 2071 dbSNP
rs61912344 2072 dbSNP
rs1393715837 2074 dbSNP
rs1434333313 2074 dbSNP
rs11055143 2076 dbSNP
rs1175928379 2076 dbSNP
rs1407936761 2076 dbSNP
rs1056197467 2078 dbSNP
rs1491143956 2078 dbSNP
rs1491444913 2079 dbSNP
rs925209428 2079 dbSNP
rs1229171398 2080 dbSNP
rs61912345 2080 dbSNP
rs59541859 2084 dbSNP
rs1268032320 2086 dbSNP
rs766915041 2086 dbSNP
rs78853864 2089 dbSNP
rs1173333916 2090 dbSNP
rs994306544 2093 dbSNP
rs1026356299 2094 dbSNP
rs1054489992 2099 dbSNP
rs891774451 2100 dbSNP
rs1233744465 2103 dbSNP
rs1316064842 2105 dbSNP
rs1304846294 2109 dbSNP
rs1225362084 2117 dbSNP
rs986481017 2120 dbSNP
rs1289049607 2121 dbSNP
rs1414180413 2123 dbSNP
rs1373877669 2126 dbSNP
rs1330816803 2127 dbSNP
rs1377637767 2140 dbSNP
rs1440059720 2141 dbSNP
rs1301038984 2145 dbSNP
rs1372866218 2146 dbSNP
rs141088153 2163 dbSNP
rs1005538346 2164 dbSNP
rs1018211853 2172 dbSNP
rs1336901728 2180 dbSNP
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rs910496423 4959 dbSNP
rs1424328274 4966 dbSNP
rs943226365 4972 dbSNP
rs1346928883 4979 dbSNP
rs1040248299 4983 dbSNP
rs549904253 4991 dbSNP
rs1177843743 4992 dbSNP
rs149749955 4997 dbSNP
rs1394308317 4999 dbSNP
rs138763242 5009 dbSNP
rs987314323 5025 dbSNP
rs1158821443 5028 dbSNP
rs1424412348 5030 dbSNP
rs1042888881 5031 dbSNP
rs1479583073 5039 dbSNP
rs537930522 5043 dbSNP
rs1200634572 5046 dbSNP
rs1437593936 5049 dbSNP
rs554101944 5050 dbSNP
rs1464043788 5057 dbSNP
rs1249114828 5058 dbSNP
rs1198058966 5067 dbSNP
rs1481211298 5087 dbSNP
rs1001307222 5091 dbSNP
rs1405054350 5096 dbSNP
rs1033652673 5103 dbSNP
rs1283500240 5104 dbSNP
rs967303867 5105 dbSNP
rs1238112566 5113 dbSNP
rs1333764500 5114 dbSNP
rs757333682 5118 dbSNP
rs1391910196 5121 dbSNP
rs895406234 5126 dbSNP
rs977721057 5129 dbSNP
rs766081020 5133 dbSNP
rs925625014 5136 dbSNP
rs756856964 5137 dbSNP
rs1408642257 5138 dbSNP
rs1025112290 5143 dbSNP
rs1469995616 5155 dbSNP
rs1310189652 5157 dbSNP
rs1362434126 5159 dbSNP
rs935612299 5164 dbSNP
rs145596658 5165 dbSNP
rs1243018610 5168 dbSNP
rs1181269462 5172 dbSNP
rs915653907 5187 dbSNP
rs1026524186 5196 dbSNP
rs948247076 5200 dbSNP
rs1348029176 5202 dbSNP
rs1208195007 5207 dbSNP
rs1239455066 5209 dbSNP
rs1257824066 5234 dbSNP
rs554666375 5235 dbSNP
rs1483566600 5242 dbSNP
rs1450599209 5246 dbSNP
rs1046540526 5252 dbSNP
rs951823512 5253 dbSNP
rs906671473 5259 dbSNP
rs1334845593 5269 dbSNP
rs1400341547 5277 dbSNP
rs1056927 5280 dbSNP
rs372614366 5286 dbSNP
rs1036539734 5292 dbSNP
rs964633994 5301 dbSNP
rs899174059 5313 dbSNP
rs1182282284 5318 dbSNP
rs576032432 5323 dbSNP
rs1445991665 5324 dbSNP
rs1237564770 5329 dbSNP
rs1191766272 5330 dbSNP
rs1444958347 5338 dbSNP
rs1263351812 5341 dbSNP
rs1217114500 5342 dbSNP
rs1358430147 5349 dbSNP
rs745545334 5350 dbSNP
rs976023323 5351 dbSNP
rs543458905 5358 dbSNP
rs1359997624 5361 dbSNP
rs76335032 5362 dbSNP
rs1284880593 5365 dbSNP
rs1452146132 5373 dbSNP
rs945231365 5376 dbSNP
rs145427559 5378 dbSNP
rs1320509997 5379 dbSNP
rs925367301 5387 dbSNP
rs533941733 5390 dbSNP
rs562202833 5391 dbSNP
rs141129907 5398 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462573. RNA binding protein: AGO2. Condition:TZM-bl BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' uaagcuACUGAGUCAGAGAAGAa 5'
                | || |  |||||||| 
Target 5' ------UCAC-CCCUCUCUUCUu 3'
 		1 - 16
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HCT116
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in ERX177603. RNA binding protein: AGO2. Condition:p53_D_AGO_CLIP_2_5 PAR-CLIP data was present in ERX177615. RNA binding protein: AGO2. Condition:p53_D_AGO_CLIP_3_5 PAR-CLIP data was present in ERX177629. RNA binding protein: AGO2. Condition:KO_D_AGO_CLIP_4_7 ...

- Krell J; Stebbing J; Carissimi C; Dabrowska et al., 2016, Genome research.

Article - Krell J; Stebbing J; Carissimi C; Dabrowska et al.
- Genome research, 2016
DNA damage activates TP53-regulated surveillance mechanisms that are crucial in suppressing tumorigenesis. TP53 orchestrates these responses directly by transcriptionally modulating genes, including microRNAs (miRNAs), and by regulating miRNA biogenesis through interacting with the DROSHA complex. However, whether the association between miRNAs and AGO2 is regulated following DNA damage is not yet known. Here, we show that, following DNA damage, TP53 interacts with AGO2 to induce or reduce AGO2's association of a subset of miRNAs, including multiple let-7 family members. Furthermore, we show that specific mutations in TP53 decrease rather than increase the association of let-7 family miRNAs, reducing their activity without preventing TP53 from interacting with AGO2. This is consistent with the oncogenic properties of these mutants. Using AGO2 RIP-seq and PAR-CLIP-seq, we show that the DNA damage-induced increase in binding of let-7 family members to the RISC complex is functional. We unambiguously determine the global miRNA-mRNA interaction networks involved in the DNA damage response, validating them through the identification of miRNA-target chimeras formed by endogenous ligation reactions. We find that the target complementary region of the let-7 seed tends to have highly fixed positions and more variable ones. Additionally, we observe that miRNAs, whose cellular abundance or differential association with AGO2 is regulated by TP53, are involved in an intricate network of regulatory feedback and feedforward circuits. TP53-mediated regulation of AGO2-miRNA interaction represents a new mechanism of miRNA regulation in carcinogenesis.
LinkOut: [PMID: 26701625]
CLIP-seq Support 1 for dataset GSM1462573
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl BaL
Location of target site ENST00000014914.5 | 3UTR | UCACCCCUCUCUUCUUGCACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
130 hsa-miR-5197-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055372 PDCD4 programmed cell death 4 2 4
MIRT063381 ETNK1 ethanolamine kinase 1 2 2
MIRT068048 SAP18 Sin3A associated protein 18 2 6
MIRT070247 FRMD6 FERM domain containing 6 2 2
MIRT088320 RAB10 RAB10, member RAS oncogene family 2 4
MIRT097550 VCAN versican 2 2
MIRT130055 TRAF6 TNF receptor associated factor 6 2 2
MIRT164190 SCOC short coiled-coil protein 2 2
MIRT183552 BTG2 BTG anti-proliferation factor 2 2 4
MIRT194954 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT199034 POLI DNA polymerase iota 2 2
MIRT200619 BCL3 B-cell CLL/lymphoma 3 2 2
MIRT231349 SERPINH1 serpin family H member 1 2 2
MIRT243305 SLC25A36 solute carrier family 25 member 36 2 2
MIRT270950 GPRC5A G protein-coupled receptor class C group 5 member A 2 2
MIRT295297 BTBD3 BTB domain containing 3 2 6
MIRT295775 MAPRE1 microtubule associated protein RP/EB family member 1 2 2
MIRT297115 GCC2 GRIP and coiled-coil domain containing 2 2 6
MIRT333632 ZFP91 ZFP91 zinc finger protein 2 2
MIRT338923 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT344878 WIPF2 WAS/WASL interacting protein family member 2 2 2
MIRT352038 BZW1 basic leucine zipper and W2 domains 1 2 4
MIRT360289 HIST1H3E histone cluster 1 H3 family member e 2 2
MIRT362931 CLDN12 claudin 12 2 2
MIRT375251 MAPK8IP3 mitogen-activated protein kinase 8 interacting protein 3 2 4
MIRT405442 RAB5B RAB5B, member RAS oncogene family 2 2
MIRT442511 OSBP oxysterol binding protein 2 2
MIRT443281 TSPAN15 tetraspanin 15 2 2
MIRT443379 PLXNA2 plexin A2 2 2
MIRT443900 NUTM2E NUT family member 2E 2 2
MIRT445537 MOG myelin oligodendrocyte glycoprotein 2 2
MIRT446235 C17orf80 chromosome 17 open reading frame 80 2 2
MIRT446962 ZNF431 zinc finger protein 431 2 2
MIRT447545 RNF165 ring finger protein 165 2 2
MIRT447686 MTPAP mitochondrial poly(A) polymerase 2 2
MIRT450499 LIMD2 LIM domain containing 2 2 2
MIRT451257 ZNF444 zinc finger protein 444 2 2
MIRT453934 COMMD5 COMM domain containing 5 2 4
MIRT454042 DDT D-dopachrome tautomerase 2 2
MIRT454549 RABL2A RAB, member of RAS oncogene family like 2A 2 2
MIRT456455 TMEM81 transmembrane protein 81 2 2
MIRT456546 TMEM63A transmembrane protein 63A 2 2
MIRT456614 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT456634 ARMCX6 armadillo repeat containing, X-linked 6 2 2
MIRT457258 RABL2B RAB, member of RAS oncogene family like 2B 2 2
MIRT458092 C8orf33 chromosome 8 open reading frame 33 2 2
MIRT458210 FOXL2 forkhead box L2 2 2
MIRT458459 RPRM reprimo, TP53 dependent G2 arrest mediator homolog 2 2
MIRT458700 LEPREL1 prolyl 3-hydroxylase 2 1 1
MIRT461649 ZSWIM4 zinc finger SWIM-type containing 4 2 2
MIRT461996 PACSIN1 protein kinase C and casein kinase substrate in neurons 1 2 2
MIRT462237 PRSS16 protease, serine 16 2 2
MIRT464774 UBE2G1 ubiquitin conjugating enzyme E2 G1 2 2
MIRT465051 TTC14 tetratricopeptide repeat domain 14 2 2
MIRT465393 TPD52L2 tumor protein D52 like 2 2 2
MIRT467612 SLC7A5 solute carrier family 7 member 5 2 2
MIRT467938 SLC16A6 solute carrier family 16 member 6 2 2
MIRT470022 PTP4A2 protein tyrosine phosphatase type IVA, member 2 2 2
MIRT470049 PTGFRN prostaglandin F2 receptor inhibitor 2 2
MIRT470514 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT471073 PIM2 Pim-2 proto-oncogene, serine/threonine kinase 2 2
MIRT471610 PAQR5 progestin and adipoQ receptor family member 5 2 18
MIRT472026 NPM1 nucleophosmin 1 2 2
MIRT474358 KMT2D lysine methyltransferase 2D 2 2
MIRT474681 KLF10 Kruppel like factor 10 2 2
MIRT474878 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT477137 FAM107B family with sequence similarity 107 member B 2 6
MIRT477850 DYRK3 dual specificity tyrosine phosphorylation regulated kinase 3 2 2
MIRT477922 DUSP2 dual specificity phosphatase 2 2 2
MIRT479772 CCND1 cyclin D1 2 2
MIRT480108 CALR calreticulin 2 2
MIRT482161 AK2 adenylate kinase 2 2 2
MIRT482232 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT483455 ARHGEF6 Rac/Cdc42 guanine nucleotide exchange factor 6 2 4
MIRT487256 KHSRP KH-type splicing regulatory protein 2 2
MIRT488677 SPAM1 sperm adhesion molecule 1 2 2
MIRT488930 GFRAL GDNF family receptor alpha like 2 2
MIRT489980 DDB1 damage specific DNA binding protein 1 2 2
MIRT492360 SEMA7A semaphorin 7A (John Milton Hagen blood group) 2 2
MIRT493688 HAP1 huntingtin associated protein 1 2 2
MIRT497165 BBX BBX, HMG-box containing 2 2
MIRT498884 ZNF12 zinc finger protein 12 2 10
MIRT500182 CHRM3 cholinergic receptor muscarinic 3 2 2
MIRT501904 MED13 mediator complex subunit 13 2 2
MIRT505903 RIMS3 regulating synaptic membrane exocytosis 3 2 6
MIRT506597 MECP2 methyl-CpG binding protein 2 2 4
MIRT508945 AK4 adenylate kinase 4 2 4
MIRT510650 TMEM167A transmembrane protein 167A 2 4
MIRT512847 A1CF APOBEC1 complementation factor 2 6
MIRT514490 SLPI secretory leukocyte peptidase inhibitor 2 4
MIRT520637 NPM3 nucleophosmin/nucleoplasmin 3 2 6
MIRT528919 TOMM20 translocase of outer mitochondrial membrane 20 2 6
MIRT529866 DGAT1 diacylglycerol O-acyltransferase 1 2 2
MIRT533359 UBE2W ubiquitin conjugating enzyme E2 W 2 2
MIRT534688 RNF125 ring finger protein 125 2 2
MIRT535930 MIER1 MIER1 transcriptional regulator 2 2
MIRT538253 CUL3 cullin 3 2 4
MIRT546021 WDR26 WD repeat domain 26 2 4
MIRT547354 NAT8L N-acetyltransferase 8 like 2 2
MIRT549430 ACVR1 activin A receptor type 1 2 2
MIRT551488 TMEM192 transmembrane protein 192 2 4
MIRT554624 RPS6KA3 ribosomal protein S6 kinase A3 2 2
MIRT560155 MOB1A MOB kinase activator 1A 2 2
MIRT560447 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT560711 ZNF324B zinc finger protein 324B 2 2
MIRT560962 WRN Werner syndrome RecQ like helicase 2 2
MIRT563870 FAM206A family with sequence similarity 206 member A 2 2
MIRT564138 ZNF689 zinc finger protein 689 2 2
MIRT568121 CDC27 cell division cycle 27 2 2
MIRT568141 CCDC88C coiled-coil domain containing 88C 2 2
MIRT568285 BCOR BCL6 corepressor 2 2
MIRT568469 ARMC12 armadillo repeat containing 12 2 2
MIRT569742 GPR173 G protein-coupled receptor 173 2 2
MIRT570175 LIPG lipase G, endothelial type 2 2
MIRT570545 RPH3A rabphilin 3A 2 2
MIRT570952 CPE carboxypeptidase E 2 2
MIRT572800 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT573114 ERBB2IP erbb2 interacting protein 2 2
MIRT574212 SDCBP syndecan binding protein 2 2
MIRT574662 KIF5B kinesin family member 5B 2 2
MIRT662448 SERPINB5 serpin family B member 5 2 2
MIRT695768 C4orf33 chromosome 4 open reading frame 33 2 2
MIRT705832 AIFM2 apoptosis inducing factor, mitochondria associated 2 2 2
MIRT712185 SRSF10 serine and arginine rich splicing factor 10 2 2
MIRT712996 CDV3 CDV3 homolog 2 2
MIRT714411 ZNF706 zinc finger protein 706 2 2
MIRT719226 CAMK4 calcium/calmodulin dependent protein kinase IV 2 2
MIRT720279 EIF1AD eukaryotic translation initiation factor 1A domain containing 2 2
MIRT720946 PPP1R3E protein phosphatase 1 regulatory subunit 3E 2 2
MIRT723201 KLHDC10 kelch domain containing 10 2 2

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