miRTarBase - #MIRT277060


—
pre-miRNA Information
pre-miRNA hsa-mir-511   
Genomic Coordinates chr10: 17845107 - 17845193
Description Homo sapiens miR-511 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-511-3p
Sequence 54| AAUGUGUAGCAAAAGACAGA |73
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30502461 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs548691953 3 dbSNP
rs1322530388 4 dbSNP
rs1313209508 11 dbSNP
rs1223031412 19 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol NDFIP2   
Synonyms N4WBP5A
Description Nedd4 family interacting protein 2
Transcript NM_001161407   
Other Transcripts NM_019080   
Expression
Putative miRNA Targets on NDFIP2
3'UTR of NDFIP2
(miRNA target sites are highlighted)		 
>NDFIP2|NM_001161407|3'UTR
   1 AGACTGCATCAACCCGACATTCCTTTCTTATACCAATGTGAAATTTCCAGATCATCTGTAAACCTACAACTTTAATAGAA
  81 GACTACTAATAACAGAAGACAAATTAGTGAAGAAAAGACGGAGTTTCGAAATTGAATGGCAGGGTGGTTTTTGCTTACAA
 161 GCCATTTCTGTTCATTCTTTAAGTATCTATATTTCATTTGTTTTGCACATATGCATATGTGCCCATTTAAGATATTTGCA
 241 TATACTTGATAGAAACCATAAAGTTGTAGCAGTTAAGTCCAGTCACATTTGGTTAATCAGTGTTTGATATAATTGAAAGA
 321 GTTGAGTGGATAAACAGTCTTCCAGCTTGTAAATGCCATTGACTTCTGACCTGACATTTAGTATAATAAAAATGAAATTC
 401 TTAACCATGTCAAATGATTTAGTTTCTGGCTCTTAGACTCATCTGGCAGTTCTACACATGAAACATCTTTTGTTATATAA
 481 GGTGTATTGAAACCTGCAGTGCTGATTATTAGAAAGGATTTGTCAGATTTTTGAACATGATATTTACATTATTATTTAGG
 561 AAAACTCTTCCTGTAAATAACCATGCATAACTTACTTTCTGCAATGTTTTCTTAGAAATTGTGTCCAGATAGCTTTCACT
 641 AATTTTAAATTAAGTGAACTAAATATATATGTGTATATGTATACACATATATATACACACACACATATATATATTTAGAA
 721 ACGTGAGTGTTAAAGATAGAATTTGTTTTAGGACAAATTTTAAGAAAATGTGGGAATACCAAATGTCCTTTATAAGAAAA
 801 ATAAATTTTATTTTAAGGGACATACTAGTTTTAGGGATTTTCAGATGGGAAGCTGCATTTTTAGGATTGCCCATCTTAAG
 881 AGATCTTGCAGGAAGAGATTGTATTAGATATTATATTTATTTCATTTAAGATAATTTTCAAAGTTAATTTTCTAAATAAG
 961 ATAATTCTCATTTGTGTTTGTCTTTTAAAAGGCCAATAAAATATCTTTCAGTATCATTGTAATAATTTTTTAGAGTTTAA
1041 TTTGTAAAGCTTAGCAAATAAAATCTTGTACTATGAATAGCTTCTTGCTTTATGACTTTAGGATTAACTTGTAAAAAACA
1121 TATCCTGAACTGAGATATGCAAAATACTCATTTTCAAGTTATGGAAATGTGTTTGTGGCATATAGGACTGTGGGGTCTGT
1201 GTGTGTAGTGAGAGTGTGTAGCCACTATTATAACTGGAATTTAATTTACATTCATAAACTACTATATTTCCCATCTTGCA
1281 AATCATTTTATGTCTCATCTGTTTTTCCTTTCGGTTATATCTTTGGTTTTGAATACCAACATTTAAAATGATGGTATTTT
1361 ATCTTTTAAACTTAAAAATTATTTAATACAGCTATATGGACCTTATAAAATTGATTTCTTATTTATTATTAGACATTACT
1441 ACTAAAAGGTACATCTAACTATTCAGGGACATTTTTCCATTTCCAAAAAATAAAATTTATTATGCTTTATAACCTCTTCT
1521 GTATTTTCTAATTTTTTCATTGTCTTTGATAAATAAAACAGTTTTGTTTTGCTAATATAGCCTATTTTTTGTTTTGTCTC
1601 ATTCAGTTTACTTTCCTGCGTAGAATTTTTATTGTTATATTAAAATTTTTATTGTTGTATTAAAGTACCTGTGTTACACC
1681 CCTTGAAGTAAGACAGTAGCATGGGGTAAAGAAAAAATATTTAGTTTAGTTGCCTAATTTGGAAGTTAATTAAAATTAAA
1761 CTGTACTAATAACATATTCAAACTCATGCTGGATCTCTTTCATATTAATTTCTTATAGACCTGTACTTTATTCTTTCAAT
1841 AATTTTTAAATGAAATTAAGCTTTGCTACATGGTAATTAAATAATTACTAGGAAGCTTAGCTATCAAACATCGACTTACT
1921 AAAATTTCATTTTAGCTTTTATGGTATATGTGCTTGTTTTCTGAATATGGATACATGTTACTTTTGATCCAGCATCAAAA
2001 CTTCACTTTTTGTTTTGACTTTTCCCCCCAAATCTGTAAGGTTCAAGTATACATATTACTGAATCCTCTATAATTGGCAT
2081 AATTCAATGGTAGCCTTAAATCTCATCATGTAAGCAGGGGAATCAGAATGTTATTTTCAAGAACTTAATGTTCCCTTCAG
2161 ATATATAAAATCCTGCATACTTCATTTCCTGTGAGCTTGAACAGCTGCTGTTGTGTTTTGGGGATGCTTGATCATCTTTG
2241 CACTCTGCCTTAAAGATTGAAAAATCAAAACTCTTGTTAGGGTATCTAAACATTTTTGAGTGTGAACTGGGGATTGGAAG
2321 TTAATACAAAAAAATTTCAAATTATTTCTATTGTAAATGAATAAGCTAGTCATGGCTAGGATAATCCATTTTCATGTATT
2401 TATGCAATAAACTGAATTTTAAGGCAAAAACAACACTTTTCTATATAGTGTATGCAGGACAGATTTTAGAAACTTAGATT
2481 AAAATACAAATCCCATTACATTTGGTTAAAATGAAAATCTCTGCTTAATGGAAAAAATACTAATCTTTAGCCTATTTTGA
2561 GTCTATAAGATATATTTCATTTTAGACATGCCTTCTAAGTTGTTCACAGATTTTTACCTGCTAAAACAATATTATTTCCA
2641 GTAAAACCTCTCCTAACAGGAAAAGTGGAGTTCAAAATATCCAATTGGAGAAAAATTCAGAGTTCCTTCATTAAATATAA
2721 TTTTTTTCATCTAGTATGTACTATTTCAAGAAGTGCAAAAAGTAATGATAGTGAATGTGATACCATACTTAACTAAGGTA
2801 ATATATATCCTTAGTTTGCTCAAAAGAGTCCTGGTTATTCCTGTTTTCTCAGCTTAATAGTGCCTCATCGTACTCTCAAA
2881 AGTGTTCTAATTTGGAGGATAAGTTATATGATCATCCTGTGTATAATTGTAGACTGTACCAAGAAGCAACTACCTTAGCT
2961 CCACTGCCCTTTGAGGGATGGAACTGGGGTAAGGGCAGGAGCCAGTTATTATTGCCACAGTGTTTTCTAATGAACCATTT
3041 GGCCTGTAGAAGAGGAATAGTATTTTTTTTAATAGTTGTATTTGAATGATTCCAGCTTATCGTAAATACTAAACTGAATG
3121 GCTTTTATATTTTTAACTGCTGTTAAATGTTATTTTAGCATTTATTAGTTGTTTATTATTTAATTCTTCAAATAGTCATA
3201 TGAAAACATATATTTGATAAAGGTCAATTGTTAGATGATAATGTGCCATTCATTATCATAGGAATGTCCTTGCCCATATA
3281 TAAAACATGCTGGCATGTATTTTACTTGTTAATAAAGTTGTATAGATGTGGAAGTGTGAACCTGTGATGCATCCTTTTCA
3361 AAATCAGTTTAAGATTCGCATATTATCATGACTGTGACCTCACTAAACTGTTTATGTGACAAACCTTTCAAGATTGGAGA
3441 TGAAAACAACACTTGTGAAATTAGGTTGGGGTTGCAACATCTTTTAACTTCTCAGTTATTTGTATGTCAGGAGACAGATT
3521 GTGGTTTAATTTTAATAAACAAAATATCATCTTTTTGAAAATAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' agACAGA-AAACG-AUGUGUAa 5'
            ||| | | ||: ||||||| 
Target 5' taTGTGTATATGTATACACATa 3'
 668 - 689 154.00 -8.40
2 
miRNA  3' agACAGAAAACGAUGUGUAa 5'
            || |  || |||||||| 
Target 5' tcTGGCAGTT-CTACACATg 3'
 442 - 460 153.00 -11.90
3 
miRNA  3' agACAGAAAAC--GAUGUGUAa 5'
            | || ||||  :|:||||| 
Target 5' taTTTCATTTGTTTTGCACATa 3'
 190 - 211 144.00 -8.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN15838009 2 COSMIC
COSN30551578 57 COSMIC
COSN15259049 604 COSMIC
COSN27993219 992 COSMIC
COSN28723224 1285 COSMIC
COSN8421780 1342 COSMIC
COSN31570446 1410 COSMIC
COSN28727242 1514 COSMIC
COSN17078497 1522 COSMIC
COSN26583601 1532 COSMIC
COSN30163115 1575 COSMIC
COSN6233059 1645 COSMIC
COSN20092794 1988 COSMIC
COSN15753206 2214 COSMIC
COSN6233060 2274 COSMIC
COSN31595405 2419 COSMIC
COSN31595192 2524 COSMIC
COSN31516927 2662 COSMIC
COSN26643228 2701 COSMIC
COSN14465238 3014 COSMIC
COSN7419175 3254 COSMIC
COSN20092795 3578 COSMIC
COSN5345650 3657 COSMIC
COSN9471385 3733 COSMIC
COSN25870628 3760 COSMIC
COSN7419176 4622 COSMIC
COSN19442766 4757 COSMIC
COSN6233061 4889 COSMIC
COSN1627177 4917 COSMIC
COSN1627178 4918 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs763152752 10 dbSNP
rs764383598 11 dbSNP
rs1318213860 13 dbSNP
rs1325100653 19 dbSNP
rs565171814 21 dbSNP
rs761726222 22 dbSNP
rs1382313898 27 dbSNP
rs1302257405 28 dbSNP
rs1284836747 30 dbSNP
rs376204236 34 dbSNP
rs756101450 36 dbSNP
rs1435756475 41 dbSNP
rs765860832 43 dbSNP
rs753380904 47 dbSNP
rs754377069 52 dbSNP
rs527857920 88 dbSNP
rs1290499745 91 dbSNP
rs1164652755 92 dbSNP
rs1459965847 93 dbSNP
rs540373255 98 dbSNP
rs749413291 114 dbSNP
rs893734165 116 dbSNP
rs1250283242 117 dbSNP
rs1197268025 127 dbSNP
rs1266552817 127 dbSNP
rs542060636 128 dbSNP
rs946057548 132 dbSNP
rs1274079531 133 dbSNP
rs1229018554 134 dbSNP
rs1367356542 136 dbSNP
rs190419099 138 dbSNP
rs1435419526 144 dbSNP
rs1042378387 154 dbSNP
rs928720088 156 dbSNP
rs542536313 157 dbSNP
rs868266247 163 dbSNP
rs528944663 171 dbSNP
rs1430940332 178 dbSNP
rs1171338119 181 dbSNP
rs548038672 181 dbSNP
rs1472677937 194 dbSNP
rs1181208114 195 dbSNP
rs1017061779 204 dbSNP
rs1409432850 207 dbSNP
rs1434874128 208 dbSNP
rs1176755541 212 dbSNP
rs1251170324 224 dbSNP
rs1206036388 227 dbSNP
rs1344428513 230 dbSNP
rs1276338171 234 dbSNP
rs962962356 235 dbSNP
rs560421480 237 dbSNP
rs1226183783 240 dbSNP
rs1026027090 246 dbSNP
rs548706677 263 dbSNP
rs950346375 267 dbSNP
rs981888568 269 dbSNP
rs1371403166 274 dbSNP
rs1037056923 278 dbSNP
rs896814601 285 dbSNP
rs1409377520 286 dbSNP
rs1426277607 287 dbSNP
rs993818955 289 dbSNP
rs1286870700 292 dbSNP
rs927718432 297 dbSNP
rs937753014 298 dbSNP
rs1484054582 336 dbSNP
rs1050778085 342 dbSNP
rs991063510 348 dbSNP
rs890883166 352 dbSNP
rs1007096300 365 dbSNP
rs528565981 366 dbSNP
rs1328229763 371 dbSNP
rs1288540947 373 dbSNP
rs140219066 374 dbSNP
rs779212860 394 dbSNP
rs923971451 397 dbSNP
rs1011477472 401 dbSNP
rs1447941710 406 dbSNP
rs1360312483 410 dbSNP
rs1339288808 430 dbSNP
rs182663045 432 dbSNP
rs1020234638 436 dbSNP
rs1421159983 438 dbSNP
rs889868856 440 dbSNP
rs540320900 445 dbSNP
rs1473174635 446 dbSNP
rs79382151 448 dbSNP
rs1038975509 453 dbSNP
rs981451672 462 dbSNP
rs1268578479 482 dbSNP
rs928672380 483 dbSNP
rs146464637 484 dbSNP
rs1319625550 491 dbSNP
rs1230786673 492 dbSNP
rs1025890217 494 dbSNP
rs971613745 498 dbSNP
rs1228340301 512 dbSNP
rs992024488 529 dbSNP
rs1489369552 531 dbSNP
rs1433556395 534 dbSNP
rs1003641389 536 dbSNP
rs1034652976 537 dbSNP
rs909376076 538 dbSNP
rs959391773 548 dbSNP
rs990578415 549 dbSNP
rs553890389 556 dbSNP
rs1452425179 559 dbSNP
rs1387182002 564 dbSNP
rs915082268 566 dbSNP
rs1448829789 569 dbSNP
rs967840633 574 dbSNP
rs1487392601 576 dbSNP
rs977866225 577 dbSNP
rs1221890856 578 dbSNP
rs567656651 579 dbSNP
rs1390811117 581 dbSNP
rs1429383927 585 dbSNP
rs1036598410 591 dbSNP
rs1306443588 592 dbSNP
rs919528510 598 dbSNP
rs1351809528 599 dbSNP
rs1226800964 602 dbSNP
rs929615816 608 dbSNP
rs536722064 614 dbSNP
rs774371084 633 dbSNP
rs771969479 635 dbSNP
rs1293106793 636 dbSNP
rs1437513160 639 dbSNP
rs140766169 649 dbSNP
rs576014362 670 dbSNP
rs1006632816 671 dbSNP
rs1226998461 675 dbSNP
rs1270521414 677 dbSNP
rs56226041 682 dbSNP
rs994353239 684 dbSNP
rs892950205 685 dbSNP
rs1266434578 692 dbSNP
rs1191391520 699 dbSNP
rs1490750413 702 dbSNP
rs1222033458 703 dbSNP
rs1011841225 704 dbSNP
rs1248982193 712 dbSNP
rs1203737812 715 dbSNP
rs1020182586 721 dbSNP
rs376048874 729 dbSNP
rs572347765 731 dbSNP
rs1310780587 735 dbSNP
rs1047241098 743 dbSNP
rs1190390295 745 dbSNP
rs1002837998 746 dbSNP
rs1347686383 752 dbSNP
rs1035692400 756 dbSNP
rs1409217754 762 dbSNP
rs1166214199 763 dbSNP
rs958994888 764 dbSNP
rs77872952 777 dbSNP
rs959067577 778 dbSNP
rs1406114041 779 dbSNP
rs1376825901 781 dbSNP
rs780003153 787 dbSNP
rs909313122 788 dbSNP
rs963555739 792 dbSNP
rs565273348 794 dbSNP
rs185416327 800 dbSNP
rs1022013154 801 dbSNP
rs1409227434 801 dbSNP
rs972654983 802 dbSNP
rs1483069202 803 dbSNP
rs1252103270 804 dbSNP
rs919476375 807 dbSNP
rs1482599485 809 dbSNP
rs1321863099 816 dbSNP
rs561488597 820 dbSNP
rs573677329 825 dbSNP
rs977897322 827 dbSNP
rs923740436 828 dbSNP
rs199726465 838 dbSNP
rs190712028 860 dbSNP
rs1228044290 867 dbSNP
rs955504982 883 dbSNP
rs562493899 898 dbSNP
rs182665605 907 dbSNP
rs1267832874 914 dbSNP
rs1394215224 919 dbSNP
rs1401483501 921 dbSNP
rs1358042082 927 dbSNP
rs1481601526 935 dbSNP
rs1470809803 937 dbSNP
rs942382012 942 dbSNP
rs1157928147 950 dbSNP
rs1288916778 955 dbSNP
rs1039430945 961 dbSNP
rs1472735011 965 dbSNP
rs546198299 967 dbSNP
rs1210332015 968 dbSNP
rs986732072 969 dbSNP
rs911235911 970 dbSNP
rs1268753811 981 dbSNP
rs942705698 995 dbSNP
rs1266680576 1000 dbSNP
rs1208311985 1005 dbSNP
rs367710736 1019 dbSNP
rs1262557420 1022 dbSNP
rs116808578 1024 dbSNP
rs1339976484 1029 dbSNP
rs1315584958 1030 dbSNP
rs1239237047 1033 dbSNP
rs920028910 1038 dbSNP
rs1473268760 1039 dbSNP
rs1041578160 1055 dbSNP
rs930007963 1056 dbSNP
rs1181543144 1060 dbSNP
rs565187442 1063 dbSNP
rs1047270112 1065 dbSNP
rs1368565856 1066 dbSNP
rs760655954 1075 dbSNP
rs1002785857 1080 dbSNP
rs1246571149 1082 dbSNP
rs17071599 1094 dbSNP
rs1447953964 1098 dbSNP
rs1264073431 1101 dbSNP
rs1208308304 1106 dbSNP
rs1355700748 1108 dbSNP
rs1292643873 1110 dbSNP
rs894458203 1111 dbSNP
rs1013351270 1113 dbSNP
rs1296796085 1114 dbSNP
rs1399403599 1121 dbSNP
rs1431106166 1123 dbSNP
rs1328016592 1126 dbSNP
rs545713895 1143 dbSNP
rs1321124615 1155 dbSNP
rs532411056 1180 dbSNP
rs963803716 1195 dbSNP
rs972160822 1198 dbSNP
rs1283282202 1206 dbSNP
rs1427097939 1211 dbSNP
rs1200630583 1214 dbSNP
rs1388796765 1221 dbSNP
rs1011932468 1223 dbSNP
rs1475917431 1224 dbSNP
rs1375191095 1225 dbSNP
rs1026431469 1231 dbSNP
rs1353162324 1234 dbSNP
rs567418160 1236 dbSNP
rs903617814 1240 dbSNP
rs1269679041 1243 dbSNP
rs1482116624 1248 dbSNP
rs370063561 1249 dbSNP
rs999220661 1253 dbSNP
rs1215111528 1259 dbSNP
rs1328422818 1268 dbSNP
rs954903515 1270 dbSNP
rs1280615437 1276 dbSNP
rs776078745 1281 dbSNP
rs1429177813 1287 dbSNP
rs987664306 1297 dbSNP
rs1209489739 1300 dbSNP
rs1407381618 1304 dbSNP
rs1255757906 1305 dbSNP
rs1369423023 1306 dbSNP
rs1473658086 1309 dbSNP
rs754854220 1311 dbSNP
rs1411626901 1313 dbSNP
rs1469080317 1314 dbSNP
rs1399071286 1324 dbSNP
rs942349603 1331 dbSNP
rs1403505901 1336 dbSNP
rs1414597088 1337 dbSNP
rs1311737153 1339 dbSNP
rs761334493 1354 dbSNP
rs1018205507 1355 dbSNP
rs964284518 1355 dbSNP
rs1411211190 1356 dbSNP
rs974075075 1369 dbSNP
rs1288786867 1377 dbSNP
rs1205098056 1379 dbSNP
rs919892106 1382 dbSNP
rs914285791 1387 dbSNP
rs930079825 1389 dbSNP
rs947124225 1390 dbSNP
rs1041523558 1403 dbSNP
rs1284749792 1407 dbSNP
rs903008485 1409 dbSNP
rs938520918 1411 dbSNP
rs1276609270 1421 dbSNP
rs1345623745 1427 dbSNP
rs193206553 1428 dbSNP
rs928811766 1430 dbSNP
rs183469703 1431 dbSNP
rs894396322 1432 dbSNP
rs938875734 1452 dbSNP
rs1056343490 1460 dbSNP
rs1177917804 1464 dbSNP
rs1407343828 1464 dbSNP
rs1471209448 1464 dbSNP
rs1206087164 1479 dbSNP
rs1186792520 1483 dbSNP
rs1461583758 1512 dbSNP
rs532025374 1513 dbSNP
rs1212082 1514 dbSNP
rs1016681966 1517 dbSNP
rs899197281 1521 dbSNP
rs750091375 1522 dbSNP
rs17071601 1526 dbSNP
rs954851248 1530 dbSNP
rs1477947949 1532 dbSNP
rs59945183 1554 dbSNP
rs1017819802 1566 dbSNP
rs878996254 1581 dbSNP
rs965331763 1583 dbSNP
rs572655587 1601 dbSNP
rs1433156534 1602 dbSNP
rs1392682333 1608 dbSNP
rs989789778 1609 dbSNP
rs1308310832 1620 dbSNP
rs1395305732 1634 dbSNP
rs1402484756 1636 dbSNP
rs1389532270 1638 dbSNP
rs890843273 1644 dbSNP
rs1008081657 1649 dbSNP
rs1331627826 1652 dbSNP
rs914215828 1660 dbSNP
rs772849388 1661 dbSNP
rs535299703 1673 dbSNP
rs1301377097 1678 dbSNP
rs1344454211 1694 dbSNP
rs964003822 1712 dbSNP
rs1229199343 1713 dbSNP
rs973978788 1714 dbSNP
rs1319382861 1715 dbSNP
rs1274258248 1728 dbSNP
rs554896619 1730 dbSNP
rs1245880478 1733 dbSNP
rs1360866961 1735 dbSNP
rs1317797935 1740 dbSNP
rs924375967 1743 dbSNP
rs1289620101 1754 dbSNP
rs1433199886 1757 dbSNP
rs1348197432 1764 dbSNP
rs368513684 1765 dbSNP
rs982893877 1777 dbSNP
rs574952262 1779 dbSNP
rs1212007582 1797 dbSNP
rs1057372471 1807 dbSNP
rs1420022163 1808 dbSNP
rs1187875406 1823 dbSNP
rs1268422817 1824 dbSNP
rs1487340799 1834 dbSNP
rs915792019 1837 dbSNP
rs1267542145 1843 dbSNP
rs948635560 1849 dbSNP
rs1490699633 1853 dbSNP
rs1037652672 1855 dbSNP
rs899142537 1864 dbSNP
rs1307247814 1869 dbSNP
rs916054161 1869 dbSNP
rs1296823521 1876 dbSNP
rs947677963 1880 dbSNP
rs993477104 1889 dbSNP
rs41288270 1906 dbSNP
rs1047773613 1908 dbSNP
rs1168668701 1920 dbSNP
rs74922628 1921 dbSNP
rs1306081910 1925 dbSNP
rs753226976 1951 dbSNP
rs1460104004 1961 dbSNP
rs1354894978 1966 dbSNP
rs562558750 1967 dbSNP
rs1008979975 1971 dbSNP
rs1391135138 1975 dbSNP
rs748764252 1977 dbSNP
rs924977575 1979 dbSNP
rs150468706 1981 dbSNP
rs964942752 1985 dbSNP
rs1323860701 1990 dbSNP
rs545024325 1992 dbSNP
rs116166707 1998 dbSNP
rs764724245 2013 dbSNP
rs968352751 2014 dbSNP
rs899662535 2016 dbSNP
rs1294862785 2021 dbSNP
rs977098650 2026 dbSNP
rs565532040 2040 dbSNP
rs1390737847 2043 dbSNP
rs1324921771 2053 dbSNP
rs1247198468 2057 dbSNP
rs1373895448 2057 dbSNP
rs959781782 2061 dbSNP
rs1299820422 2065 dbSNP
rs992631320 2067 dbSNP
rs1464324085 2073 dbSNP
rs1266230279 2076 dbSNP
rs1176683203 2077 dbSNP
rs1026891954 2080 dbSNP
rs776112015 2080 dbSNP
rs1180384994 2083 dbSNP
rs1419155285 2085 dbSNP
rs1251820197 2088 dbSNP
rs34603928 2088 dbSNP
rs71110004 2088 dbSNP
rs756930912 2088 dbSNP
rs763476349 2088 dbSNP
rs1270648462 2091 dbSNP
rs1460241025 2094 dbSNP
rs1465695134 2098 dbSNP
rs1188660860 2100 dbSNP
rs753916424 2102 dbSNP
rs1259199954 2105 dbSNP
rs948603924 2111 dbSNP
rs1004217801 2115 dbSNP
rs1309003848 2116 dbSNP
rs547655994 2116 dbSNP
rs12585004 2117 dbSNP
rs960185449 2120 dbSNP
rs529895949 2121 dbSNP
rs34511187 2125 dbSNP
rs1454386853 2126 dbSNP
rs1385896776 2128 dbSNP
rs1157663301 2131 dbSNP
rs865838807 2154 dbSNP
rs991977322 2164 dbSNP
rs929272225 2167 dbSNP
rs916102740 2170 dbSNP
rs1161873397 2184 dbSNP
rs1047722253 2186 dbSNP
rs566998377 2188 dbSNP
rs779000411 2195 dbSNP
rs978869838 2199 dbSNP
rs1204801363 2203 dbSNP
rs700396 2204 dbSNP
rs1243660606 2205 dbSNP
rs1358567403 2214 dbSNP
rs1390751666 2218 dbSNP
rs1039149226 2219 dbSNP
rs8000301 2220 dbSNP
rs1288386168 2222 dbSNP
rs1324489934 2224 dbSNP
rs1317166975 2225 dbSNP
rs1382473271 2234 dbSNP
rs1011094947 2235 dbSNP
rs1040581128 2238 dbSNP
rs1291345401 2245 dbSNP
rs1022940974 2268 dbSNP
rs538702858 2269 dbSNP
rs912208709 2271 dbSNP
rs1164809699 2272 dbSNP
rs370849898 2282 dbSNP
rs1371756369 2291 dbSNP
rs966959489 2299 dbSNP
rs1264136864 2301 dbSNP
rs998484347 2301 dbSNP
rs779937749 2305 dbSNP
rs899696663 2326 dbSNP
rs1490214934 2335 dbSNP
rs1231851692 2338 dbSNP
rs995354159 2348 dbSNP
rs1031340403 2355 dbSNP
rs1224692056 2356 dbSNP
rs959721916 2361 dbSNP
rs552177824 2364 dbSNP
rs7981574 2381 dbSNP
rs1004124503 2385 dbSNP
rs1365685143 2387 dbSNP
rs1304261618 2393 dbSNP
rs1407617651 2399 dbSNP
rs1035730581 2404 dbSNP
rs895784435 2408 dbSNP
rs1023482451 2410 dbSNP
rs970266987 2410 dbSNP
rs768531578 2412 dbSNP
rs973266714 2419 dbSNP
rs1259459155 2425 dbSNP
rs920470533 2426 dbSNP
rs929221404 2436 dbSNP
rs978904371 2443 dbSNP
rs983364186 2444 dbSNP
rs1257865192 2459 dbSNP
rs187357067 2467 dbSNP
rs1196093620 2473 dbSNP
rs1185547585 2477 dbSNP
rs1341250359 2482 dbSNP
rs1260813914 2488 dbSNP
rs74100740 2495 dbSNP
rs1039508972 2503 dbSNP
rs1284728490 2506 dbSNP
rs1158361058 2508 dbSNP
rs900599697 2512 dbSNP
rs912254101 2514 dbSNP
rs943690561 2536 dbSNP
rs946841100 2537 dbSNP
rs1410830300 2540 dbSNP
rs1467708116 2556 dbSNP
rs1303433531 2571 dbSNP
rs1375089468 2581 dbSNP
rs41288272 2584 dbSNP
rs1469540532 2599 dbSNP
rs921016834 2603 dbSNP
rs902723937 2609 dbSNP
rs1192933098 2612 dbSNP
rs1468671558 2628 dbSNP
rs1232194416 2629 dbSNP
rs999771669 2636 dbSNP
rs1035293730 2638 dbSNP
rs1310276557 2642 dbSNP
rs769409159 2643 dbSNP
rs895459318 2644 dbSNP
rs1202637553 2648 dbSNP
rs1013934397 2652 dbSNP
rs1264636762 2658 dbSNP
rs1221530757 2659 dbSNP
rs1349356478 2660 dbSNP
rs1279463854 2663 dbSNP
rs537647837 2664 dbSNP
rs1223552381 2668 dbSNP
rs886938275 2672 dbSNP
rs969833264 2673 dbSNP
rs866227861 2678 dbSNP
rs1379566176 2681 dbSNP
rs1335211867 2688 dbSNP
rs1305563991 2692 dbSNP
rs537745185 2696 dbSNP
rs973599078 2701 dbSNP
rs1027435420 2706 dbSNP
rs1057414415 2707 dbSNP
rs537465061 2708 dbSNP
rs1159047326 2710 dbSNP
rs1441544931 2711 dbSNP
rs950583886 2732 dbSNP
rs1280344266 2733 dbSNP
rs983315104 2744 dbSNP
rs1485152911 2747 dbSNP
rs557542407 2748 dbSNP
rs1208226959 2749 dbSNP
rs576226853 2757 dbSNP
rs772723811 2764 dbSNP
rs762712231 2777 dbSNP
rs1284424501 2780 dbSNP
rs1224812143 2786 dbSNP
rs944678297 2788 dbSNP
rs1176409022 2792 dbSNP
rs1313559693 2796 dbSNP
rs1245651250 2802 dbSNP
rs1384018917 2803 dbSNP
rs974779149 2807 dbSNP
rs556461280 2810 dbSNP
rs904626469 2812 dbSNP
rs1319133449 2813 dbSNP
rs191800517 2816 dbSNP
rs1421612590 2820 dbSNP
rs921972621 2825 dbSNP
rs1383234771 2829 dbSNP
rs1162871614 2833 dbSNP
rs1000231252 2834 dbSNP
rs1415740263 2837 dbSNP
rs946819643 2844 dbSNP
rs1031842160 2848 dbSNP
rs1474910080 2849 dbSNP
rs1176917367 2851 dbSNP
rs1394519005 2857 dbSNP
rs1043868961 2858 dbSNP
rs956189407 2859 dbSNP
rs879644190 2862 dbSNP
rs1290157198 2865 dbSNP
rs902663965 2867 dbSNP
rs183923591 2872 dbSNP
rs1204663084 2878 dbSNP
rs1056701452 2882 dbSNP
rs1213015804 2883 dbSNP
rs867783399 2890 dbSNP
rs1296739624 2897 dbSNP
rs1370378935 2903 dbSNP
rs776930445 2904 dbSNP
rs1387806771 2910 dbSNP
rs1014295925 2913 dbSNP
rs1363838366 2914 dbSNP
rs1302434547 2925 dbSNP
rs1425292328 2926 dbSNP
rs1351391746 2942 dbSNP
rs1303544480 2943 dbSNP
rs1346572412 2949 dbSNP
rs1231426705 2951 dbSNP
rs1195426898 2953 dbSNP
rs1276419139 2954 dbSNP
rs975490925 2955 dbSNP
rs920923476 2959 dbSNP
rs1307650624 2966 dbSNP
rs1203577579 2985 dbSNP
rs1230918534 2990 dbSNP
rs1489443894 2992 dbSNP
rs1267773056 2993 dbSNP
rs1194230996 2994 dbSNP
rs1252275301 2995 dbSNP
rs931089682 2999 dbSNP
rs1307320293 3002 dbSNP
rs983851187 3006 dbSNP
rs1170556849 3009 dbSNP
rs908402365 3012 dbSNP
rs1409541839 3013 dbSNP
rs545089815 3014 dbSNP
rs1369557356 3017 dbSNP
rs1405642882 3017 dbSNP
rs1296413880 3029 dbSNP
rs775951456 3030 dbSNP
rs1351943503 3031 dbSNP
rs1056941281 3032 dbSNP
rs1354945619 3033 dbSNP
rs558619794 3035 dbSNP
rs1325881034 3045 dbSNP
rs1427976317 3046 dbSNP
rs1369425795 3053 dbSNP
rs905558391 3054 dbSNP
rs1270051372 3056 dbSNP
rs994532026 3057 dbSNP
rs188416304 3063 dbSNP
rs1027386397 3064 dbSNP
rs1239238812 3069 dbSNP
rs1200742635 3072 dbSNP
rs1321600627 3073 dbSNP
rs1262753599 3076 dbSNP
rs149221742 3081 dbSNP
rs1213588487 3088 dbSNP
rs983263109 3102 dbSNP
rs1018786947 3114 dbSNP
rs1390789501 3114 dbSNP
rs1000260681 3123 dbSNP
rs965991808 3124 dbSNP
rs1214083231 3128 dbSNP
rs1272539523 3130 dbSNP
rs1053119186 3139 dbSNP
rs1404820317 3141 dbSNP
rs1337021057 3148 dbSNP
rs561227113 3151 dbSNP
rs1467028549 3153 dbSNP
rs891850416 3157 dbSNP
rs1242725277 3163 dbSNP
rs868101503 3175 dbSNP
rs1361598382 3176 dbSNP
rs1009498873 3184 dbSNP
rs975105782 3196 dbSNP
rs1180827666 3199 dbSNP
rs1460283650 3207 dbSNP
rs1242707694 3209 dbSNP
rs921949288 3210 dbSNP
rs761137761 3215 dbSNP
rs1259110141 3217 dbSNP
rs1238228585 3226 dbSNP
rs1354260461 3249 dbSNP
rs965365575 3253 dbSNP
rs1243452282 3254 dbSNP
rs979486842 3264 dbSNP
rs1334361968 3267 dbSNP
rs1397481199 3267 dbSNP
rs1382119305 3268 dbSNP
rs1287717972 3271 dbSNP
rs1453857565 3276 dbSNP
rs1416199517 3281 dbSNP
rs529909045 3282 dbSNP
rs1160997904 3284 dbSNP
rs1044647 3290 dbSNP
rs1443141455 3293 dbSNP
rs935452108 3303 dbSNP
rs1385049680 3304 dbSNP
rs766349789 3305 dbSNP
rs34370878 3306 dbSNP
rs1159406725 3307 dbSNP
rs1425840596 3311 dbSNP
rs1259934873 3315 dbSNP
rs1392936587 3318 dbSNP
rs192415007 3328 dbSNP
rs1322013137 3335 dbSNP
rs918117427 3336 dbSNP
rs563117692 3344 dbSNP
rs1284623020 3345 dbSNP
rs1045754879 3346 dbSNP
rs1429389350 3347 dbSNP
rs532487836 3357 dbSNP
rs1294443048 3359 dbSNP
rs764632594 3362 dbSNP
rs908309160 3365 dbSNP
rs554445829 3366 dbSNP
rs1300551694 3367 dbSNP
rs1423371913 3368 dbSNP
rs1365327497 3369 dbSNP
rs9924 3375 dbSNP
rs994482634 3383 dbSNP
rs1164140215 3385 dbSNP
rs1459774445 3390 dbSNP
rs1048772496 3395 dbSNP
rs961113916 3396 dbSNP
rs1233677254 3399 dbSNP
rs993079777 3402 dbSNP
rs917083850 3405 dbSNP
rs754463328 3412 dbSNP
rs1490148496 3417 dbSNP
rs1290508969 3418 dbSNP
rs1332611711 3420 dbSNP
rs948686913 3422 dbSNP
rs552229081 3428 dbSNP
rs7988143 3430 dbSNP
rs1018778068 3440 dbSNP
rs966306404 3441 dbSNP
rs936017391 3445 dbSNP
rs1284829686 3447 dbSNP
rs1403816084 3457 dbSNP
rs1446547136 3464 dbSNP
rs996096203 3473 dbSNP
rs1029343327 3477 dbSNP
rs1394851106 3478 dbSNP
rs968046733 3481 dbSNP
rs1239438679 3484 dbSNP
rs891878998 3486 dbSNP
rs1008974621 3502 dbSNP
rs1187707716 3505 dbSNP
rs1480164928 3518 dbSNP
rs979435849 3520 dbSNP
rs1040981779 3533 dbSNP
rs368435397 3536 dbSNP
rs996456990 3542 dbSNP
rs1198878923 3553 dbSNP
rs1027921958 3554 dbSNP
rs757272667 3555 dbSNP
rs1005223577 3558 dbSNP
rs1345145503 3573 dbSNP
rs1275925921 3578 dbSNP
rs1015227201 3586 dbSNP
rs1334352886 3596 dbSNP
rs961454352 3604 dbSNP
rs992588028 3615 dbSNP
rs1399684153 3624 dbSNP
rs868032963 3636 dbSNP
rs917093572 3637 dbSNP
rs1335009080 3639 dbSNP
rs1413949620 3648 dbSNP
rs969906747 3650 dbSNP
rs1174234211 3651 dbSNP
rs1376906580 3661 dbSNP
rs548246096 3662 dbSNP
rs1178956315 3666 dbSNP
rs1458942561 3678 dbSNP
rs568739037 3680 dbSNP
rs1353371664 3686 dbSNP
rs1442470625 3687 dbSNP
rs918077350 3693 dbSNP
rs948243439 3694 dbSNP
rs1202864349 3695 dbSNP
rs1280123153 3700 dbSNP
rs534004744 3705 dbSNP
rs1045298967 3706 dbSNP
rs1349785734 3718 dbSNP
rs1313163854 3721 dbSNP
rs935883500 3721 dbSNP
rs1222155917 3723 dbSNP
rs1053082513 3725 dbSNP
rs537711475 3727 dbSNP
rs1399039482 3728 dbSNP
rs920186941 3729 dbSNP
rs944808761 3732 dbSNP
rs557603546 3734 dbSNP
rs1048717874 3735 dbSNP
rs1383202934 3735 dbSNP
rs574768000 3736 dbSNP
rs146884822 3738 dbSNP
rs1004581131 3744 dbSNP
rs139061774 3750 dbSNP
rs1212979819 3751 dbSNP
rs1445951074 3759 dbSNP
rs1005130391 3765 dbSNP
rs1218050842 3766 dbSNP
rs1015715237 3769 dbSNP
rs901659507 3774 dbSNP
rs1290126319 3776 dbSNP
rs1228113507 3780 dbSNP
rs1380086622 3783 dbSNP
rs143034581 3787 dbSNP
rs1428673147 3790 dbSNP
rs1028875213 3798 dbSNP
rs967959853 3801 dbSNP
rs1298705392 3804 dbSNP
rs1156323759 3805 dbSNP
rs1396316967 3816 dbSNP
rs1421498133 3817 dbSNP
rs896801141 3822 dbSNP
rs1363476997 3828 dbSNP
rs1014449665 3829 dbSNP
rs1024073908 3830 dbSNP
rs1415463647 3832 dbSNP
rs1000823630 3837 dbSNP
rs1172680495 3841 dbSNP
rs1477198199 3845 dbSNP
rs1263347336 3846 dbSNP
rs531248113 3848 dbSNP
rs147451134 3854 dbSNP
rs1392987617 3865 dbSNP
rs1322729539 3867 dbSNP
rs556427888 3867 dbSNP
rs1292251556 3872 dbSNP
rs574416545 3875 dbSNP
rs1335123745 3881 dbSNP
rs1213077896 3888 dbSNP
rs543280895 3908 dbSNP
rs1278985146 3909 dbSNP
rs1025500087 3910 dbSNP
rs1401940887 3913 dbSNP
rs1343516671 3917 dbSNP
rs1292902160 3918 dbSNP
rs1436896206 3922 dbSNP
rs969556275 3933 dbSNP
rs1305498462 3945 dbSNP
rs981357226 3955 dbSNP
rs1348756830 3957 dbSNP
rs957321854 3967 dbSNP
rs1233647309 3971 dbSNP
rs754871617 3981 dbSNP
rs1464840306 3982 dbSNP
rs1278543045 3984 dbSNP
rs758604647 3984 dbSNP
rs148125298 3985 dbSNP
rs550274065 3986 dbSNP
rs1191163031 3989 dbSNP
rs559804842 3991 dbSNP
rs1196756672 3992 dbSNP
rs944735169 3993 dbSNP
rs1488997359 4004 dbSNP
rs907536581 4006 dbSNP
rs1250194685 4011 dbSNP
rs528527688 4015 dbSNP
rs1436606800 4017 dbSNP
rs1196975202 4023 dbSNP
rs1040093231 4034 dbSNP
rs1258976964 4039 dbSNP
rs1220507859 4043 dbSNP
rs901596140 4049 dbSNP
rs931794810 4059 dbSNP
rs1300480750 4061 dbSNP
rs548584718 4062 dbSNP
rs568328203 4064 dbSNP
rs372106051 4068 dbSNP
rs2760102 4074 dbSNP
rs1000769037 4075 dbSNP
rs1030944418 4079 dbSNP
rs1400513089 4082 dbSNP
rs769162367 4095 dbSNP
rs892447381 4104 dbSNP
rs1014018379 4109 dbSNP
rs1175957836 4111 dbSNP
rs1192460660 4114 dbSNP
rs867359447 4114 dbSNP
rs1392895876 4122 dbSNP
rs567278466 4128 dbSNP
rs1439511177 4132 dbSNP
rs748773958 4137 dbSNP
rs1200813996 4156 dbSNP
rs969882841 4164 dbSNP
rs1210916780 4167 dbSNP
rs770562942 4176 dbSNP
rs1307020954 4179 dbSNP
rs1239109662 4181 dbSNP
rs980921160 4182 dbSNP
rs1377413338 4184 dbSNP
rs1395560645 4191 dbSNP
rs1407983574 4195 dbSNP
rs1027102848 4196 dbSNP
rs747880786 4201 dbSNP
rs1327914487 4208 dbSNP
rs1302846715 4211 dbSNP
rs1036603219 4215 dbSNP
rs896704092 4216 dbSNP
rs184269526 4220 dbSNP
rs1439451174 4224 dbSNP
rs1440273711 4244 dbSNP
rs1024353939 4251 dbSNP
rs1180740884 4253 dbSNP
rs1422218261 4254 dbSNP
rs982978128 4260 dbSNP
rs540030388 4263 dbSNP
rs764611895 4264 dbSNP
rs976155828 4269 dbSNP
rs577244233 4272 dbSNP
rs1354129641 4282 dbSNP
rs1287975891 4289 dbSNP
rs1242342344 4307 dbSNP
rs1339450477 4315 dbSNP
rs1313031330 4316 dbSNP
rs1397241225 4320 dbSNP
rs923001058 4321 dbSNP
rs546838778 4341 dbSNP
rs957186399 4342 dbSNP
rs1361739425 4343 dbSNP
rs1211988195 4344 dbSNP
rs1160765197 4346 dbSNP
rs1456734429 4356 dbSNP
rs116562947 4357 dbSNP
rs1020219041 4387 dbSNP
rs966316374 4398 dbSNP
rs1212548646 4402 dbSNP
rs546013105 4407 dbSNP
rs1488536555 4425 dbSNP
rs1265258901 4428 dbSNP
rs1207790646 4439 dbSNP
rs1355435614 4440 dbSNP
rs1250554534 4443 dbSNP
rs1050211823 4449 dbSNP
rs903670287 4451 dbSNP
rs141886349 4452 dbSNP
rs1052323674 4454 dbSNP
rs1474343936 4456 dbSNP
rs554566930 4470 dbSNP
rs909409267 4471 dbSNP
rs940853298 4473 dbSNP
rs1164033526 4479 dbSNP
rs1459698274 4483 dbSNP
rs1036916222 4495 dbSNP
rs115975942 4496 dbSNP
rs1013549484 4510 dbSNP
rs949635968 4530 dbSNP
rs1425651887 4542 dbSNP
rs1324001694 4544 dbSNP
rs1450809435 4566 dbSNP
rs190434266 4568 dbSNP
rs905516968 4569 dbSNP
rs905228816 4570 dbSNP
rs748923845 4571 dbSNP
rs1218669473 4578 dbSNP
rs1002688509 4580 dbSNP
rs1319435597 4584 dbSNP
rs1272409509 4597 dbSNP
rs1295195884 4601 dbSNP
rs1330877887 4602 dbSNP
rs562863885 4605 dbSNP
rs1443578713 4610 dbSNP
rs1001266726 4615 dbSNP
rs1330965402 4616 dbSNP
rs1324902640 4619 dbSNP
rs1466189817 4634 dbSNP
rs1235535243 4635 dbSNP
rs556827245 4651 dbSNP
rs1054144609 4660 dbSNP
rs1477620584 4662 dbSNP
rs1334801709 4666 dbSNP
rs952860297 4669 dbSNP
rs1437629468 4672 dbSNP
rs1232044907 4674 dbSNP
rs1004344854 4682 dbSNP
rs1237158806 4689 dbSNP
rs1015757034 4699 dbSNP
rs1198936963 4700 dbSNP
rs1458703232 4702 dbSNP
rs966009748 4704 dbSNP
rs977063709 4706 dbSNP
rs1010073771 4711 dbSNP
rs540682715 4716 dbSNP
rs1486596926 4718 dbSNP
rs953096144 4728 dbSNP
rs1308789606 4735 dbSNP
rs1205203871 4738 dbSNP
rs985853332 4740 dbSNP
rs1260622010 4752 dbSNP
rs925036155 4767 dbSNP
rs1332212285 4768 dbSNP
rs1029023100 4771 dbSNP
rs953346670 4772 dbSNP
rs1417607011 4778 dbSNP
rs984761493 4783 dbSNP
rs545979407 4786 dbSNP
rs909317346 4786 dbSNP
rs1235394236 4791 dbSNP
rs1186159526 4799 dbSNP
rs936456364 4804 dbSNP
rs368029245 4805 dbSNP
rs1052271524 4807 dbSNP
rs1213718215 4818 dbSNP
rs1351959344 4824 dbSNP
rs559254625 4825 dbSNP
rs1285679801 4827 dbSNP
rs1189821052 4837 dbSNP
rs1418250703 4843 dbSNP
rs972267600 4846 dbSNP
rs918072918 4859 dbSNP
rs913776760 4864 dbSNP
rs1282676184 4865 dbSNP
rs949683514 4866 dbSNP
rs1341197151 4868 dbSNP
rs1045710203 4883 dbSNP
rs1162763118 4884 dbSNP
rs1365448964 4886 dbSNP
rs926846727 4895 dbSNP
rs1454431314 4897 dbSNP
rs1288294928 4898 dbSNP
rs1158964425 4904 dbSNP
rs1402250840 4914 dbSNP
rs949320438 4923 dbSNP
rs1411127012 4924 dbSNP
rs937024311 4930 dbSNP
rs1046341409 4933 dbSNP
rs1268277634 4934 dbSNP
rs565240997 4934 dbSNP
rs775358477 4939 dbSNP
rs1190889696 4942 dbSNP
rs905175584 4943 dbSNP
rs1010393128 4945 dbSNP
rs573303387 4951 dbSNP
rs1319148334 4954 dbSNP
rs901656454 4957 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' agacagaaaacgAUGUGUAa 5'
                      ||||||| 
Target 5' -----------aUACACAUa 3'
 		1 - 9
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 54602.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' agacagaaaacgAUGUGUAa 5'
                      ||||||| 
Target 5' ----------uaUACACAUa 3'
 		1 - 10
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000218652.7 | 3UTR | AUACACAUAUAUAUACACACACACAUAUAUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000218652.7 | 3UTR | UAUACACAUAUAUAUACACACACACAUAUAUAUAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
239 hsa-miR-511-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT068303 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT072025 SCP2 sterol carrier protein 2 2 2
MIRT073626 IGF1R insulin like growth factor 1 receptor 2 2
MIRT080574 PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 2 8
MIRT094167 PCGF3 polycomb group ring finger 3 2 4
MIRT096536 LIFR LIF receptor alpha 2 2
MIRT156224 SLC25A12 solute carrier family 25 member 12 2 2
MIRT177714 ADO 2-aminoethanethiol dioxygenase 2 2
MIRT184922 ZNF268 zinc finger protein 268 2 2
MIRT185107 LYPLAL1 lysophospholipase like 1 2 2
MIRT193093 MAPK6 mitogen-activated protein kinase 6 2 2
MIRT213346 TADA2B transcriptional adaptor 2B 2 2
MIRT225350 SDCBP syndecan binding protein 2 2
MIRT226972 AKAP2 A-kinase anchoring protein 2 2 6
MIRT226977 PALM2-AKAP2 PALM2-AKAP2 readthrough 2 6
MIRT229844 YIPF6 Yip1 domain family member 6 2 2
MIRT230994 PRRG4 proline rich and Gla domain 4 2 2
MIRT270215 ATP2A2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 2 4
MIRT277060 NDFIP2 Nedd4 family interacting protein 2 2 4
MIRT278336 CFL2 cofilin 2 2 4
MIRT280390 CALM1 calmodulin 1 2 2
MIRT298042 BACH1 BTB domain and CNC homolog 1 2 2
MIRT302449 CLIP4 CAP-Gly domain containing linker protein family member 4 2 2
MIRT311937 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 4
MIRT329263 AIMP1 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 2 2
MIRT359186 F2RL1 F2R like trypsin receptor 1 2 6
MIRT363208 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT371124 YTHDC1 YTH domain containing 1 2 2
MIRT386755 TAOK1 TAO kinase 1 2 2
MIRT395122 BAHD1 bromo adjacent homology domain containing 1 2 2
MIRT396089 MKLN1 muskelin 1 2 2
MIRT443566 EVX2 even-skipped homeobox 2 2 2
MIRT447626 CUL3 cullin 3 2 2
MIRT447680 ZNF264 zinc finger protein 264 2 2
MIRT451053 NT5C1B 5'-nucleotidase, cytosolic IB 2 2
MIRT452048 NT5C1B-RDH14 NT5C1B-RDH14 readthrough 2 2
MIRT459890 KIAA1191 KIAA1191 2 4
MIRT464483 UGCG UDP-glucose ceramide glucosyltransferase 2 2
MIRT465264 TRIM44 tripartite motif containing 44 2 2
MIRT467570 SLITRK4 SLIT and NTRK like family member 4 2 2
MIRT467800 SLC2A14 solute carrier family 2 member 14 2 2
MIRT469543 RASAL2 RAS protein activator like 2 2 2
MIRT469931 PTPRJ protein tyrosine phosphatase, receptor type J 2 4
MIRT474056 LMNB2 lamin B2 2 2
MIRT474097 LMBR1L limb development membrane protein 1 like 2 2
MIRT475183 INSIG2 insulin induced gene 2 2 6
MIRT484264 FAM177A1 family with sequence similarity 177 member A1 2 2
MIRT487567 LOXL2 lysyl oxidase like 2 2 2
MIRT499080 CBWD1 COBW domain containing 1 2 6
MIRT499126 CBWD5 COBW domain containing 5 2 6
MIRT502093 KPNA5 karyopherin subunit alpha 5 2 8
MIRT503328 SOX5 SRY-box 5 2 6
MIRT503839 NCAM2 neural cell adhesion molecule 2 2 6
MIRT504030 CEP104 centrosomal protein 104 2 4
MIRT504314 LHFPL5 LHFPL tetraspan subfamily member 5 2 8
MIRT504525 BVES blood vessel epicardial substance 2 6
MIRT504680 CYGB cytoglobin 2 4
MIRT504815 DOCK7 dedicator of cytokinesis 7 2 4
MIRT505757 SENP1 SUMO1/sentrin specific peptidase 1 2 8
MIRT506151 PLEKHA3 pleckstrin homology domain containing A3 2 6
MIRT506908 KCNJ3 potassium voltage-gated channel subfamily J member 3 2 6
MIRT508259 CD226 CD226 molecule 2 2
MIRT508307 XRCC3 X-ray repair cross complementing 3 2 4
MIRT508784 CDKL1 cyclin dependent kinase like 1 2 6
MIRT508897 C4orf29 abhydrolase domain containing 18 2 6
MIRT508967 TECRL trans-2,3-enoyl-CoA reductase like 2 4
MIRT508973 MLLT3 MLLT3, super elongation complex subunit 2 6
MIRT509149 TSC22D3 TSC22 domain family member 3 2 4
MIRT509188 TSPAN2 tetraspanin 2 2 4
MIRT509212 BRCC3 BRCA1/BRCA2-containing complex subunit 3 2 4
MIRT509214 SEC23IP SEC23 interacting protein 2 6
MIRT509237 PDE10A phosphodiesterase 10A 2 6
MIRT509248 OTX1 orthodenticle homeobox 1 2 6
MIRT509469 TRIM2 tripartite motif containing 2 2 4
MIRT509754 EFCAB11 EF-hand calcium binding domain 11 2 4
MIRT509805 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT509938 USP25 ubiquitin specific peptidase 25 2 4
MIRT509954 ITGA1 integrin subunit alpha 1 2 6
MIRT509965 KANSL1L KAT8 regulatory NSL complex subunit 1 like 2 4
MIRT509988 GTF2H1 general transcription factor IIH subunit 1 2 4
MIRT510036 NAA25 N(alpha)-acetyltransferase 25, NatB auxiliary subunit 2 6
MIRT510164 STARD8 StAR related lipid transfer domain containing 8 2 4
MIRT510199 CYP4F11 cytochrome P450 family 4 subfamily F member 11 2 9
MIRT510249 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 6
MIRT510502 YWHAQ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta 2 2
MIRT510906 PURA purine rich element binding protein A 2 4
MIRT511051 NRF1 nuclear respiratory factor 1 2 4
MIRT511273 KLHL23 kelch like family member 23 2 4
MIRT511368 IL6ST interleukin 6 signal transducer 2 4
MIRT511521 HMGB2 high mobility group box 2 2 4
MIRT512004 DUSP7 dual specificity phosphatase 7 2 4
MIRT512080 CSRNP3 cysteine and serine rich nuclear protein 3 2 8
MIRT514234 EPOR erythropoietin receptor 2 4
MIRT515327 SLC35E3 solute carrier family 35 member E3 2 4
MIRT515409 WDR72 WD repeat domain 72 2 8
MIRT515973 C9orf156 tRNA methyltransferase O 2 4
MIRT516015 NLGN3 neuroligin 3 2 4
MIRT516271 DBT dihydrolipoamide branched chain transacylase E2 2 10
MIRT516495 GLRX2 glutaredoxin 2 2 4
MIRT517272 ANG angiogenin 2 4
MIRT517511 KCNK12 potassium two pore domain channel subfamily K member 12 2 4
MIRT517555 VENTX VENT homeobox 2 4
MIRT519511 RBM22 RNA binding motif protein 22 2 4
MIRT520350 UBN2 ubinuclein 2 2 2
MIRT520687 TMED7 transmembrane p24 trafficking protein 7 2 4
MIRT520960 SRGAP2 SLIT-ROBO Rho GTPase activating protein 2 2 2
MIRT521759 PPIL1 peptidylprolyl isomerase like 1 2 6
MIRT522036 PAPSS2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 2 4
MIRT522127 NELL2 neural EGFL like 2 2 4
MIRT522624 MAP7D1 MAP7 domain containing 1 2 4
MIRT522761 LDLR low density lipoprotein receptor 2 6
MIRT522924 KAT6A lysine acetyltransferase 6A 2 6
MIRT523391 GRIN2B glutamate ionotropic receptor NMDA type subunit 2B 2 4
MIRT523851 ETV6 ETS variant 6 2 2
MIRT523890 EPHA5 EPH receptor A5 2 4
MIRT523945 E2F8 E2F transcription factor 8 2 4
MIRT524222 DCUN1D3 defective in cullin neddylation 1 domain containing 3 2 2
MIRT524410 CNTNAP5 contactin associated protein like 5 2 4
MIRT524568 CALML4 calmodulin like 4 2 4
MIRT524611 ENTHD1 ENTH domain containing 1 2 2
MIRT524907 AMMECR1 Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 2 4
MIRT525019 ABHD13 abhydrolase domain containing 13 2 6
MIRT525211 C19orf12 chromosome 19 open reading frame 12 2 2
MIRT528253 BMS1 BMS1, ribosome biogenesis factor 2 2
MIRT528294 ZNF76 zinc finger protein 76 2 2
MIRT531898 INVS inversin 2 4
MIRT535962 MOGAT1 monoacylglycerol O-acyltransferase 1 2 2
MIRT540823 SSPN sarcospan 2 4
MIRT541836 CDON cell adhesion associated, oncogene regulated 2 4
MIRT541914 BMPR1A bone morphogenetic protein receptor type 1A 2 4
MIRT542156 KIAA2018 upstream transcription factor family member 3 2 6
MIRT542175 SERTM1 serine rich and transmembrane domain containing 1 2 6
MIRT542217 IRS1 insulin receptor substrate 1 2 4
MIRT542225 UGT2B4 UDP glucuronosyltransferase family 2 member B4 2 6
MIRT543654 PLEKHM3 pleckstrin homology domain containing M3 2 2
MIRT544097 EDA2R ectodysplasin A2 receptor 2 2
MIRT544533 SPPL3 signal peptide peptidase like 3 2 2
MIRT544954 TUB tubby bipartite transcription factor 2 4
MIRT545027 PLP1 proteolipid protein 1 2 2
MIRT546524 SERTAD3 SERTA domain containing 3 2 2
MIRT547242 OSBPL9 oxysterol binding protein like 9 2 4
MIRT548198 FNIP1 folliculin interacting protein 1 2 2
MIRT548272 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT549480 ACBD5 acyl-CoA binding domain containing 5 2 2
MIRT549498 ABI2 abl interactor 2 2 2
MIRT550325 SMAD9 SMAD family member 9 2 2
MIRT550563 CYP4V2 cytochrome P450 family 4 subfamily V member 2 2 6
MIRT550642 AR androgen receptor 2 2
MIRT550945 CTSE cathepsin E 2 4
MIRT550961 POT1 protection of telomeres 1 2 2
MIRT551178 ATP7A ATPase copper transporting alpha 2 2
MIRT551416 LRRC31 leucine rich repeat containing 31 2 2
MIRT551507 ADH1B alcohol dehydrogenase 1B (class I), beta polypeptide 2 2
MIRT551517 MMADHC methylmalonic aciduria and homocystinuria, cblD type 2 2
MIRT551550 TMEM133 transmembrane protein 133 2 2
MIRT551757 TRIM42 tripartite motif containing 42 2 2
MIRT551872 TMEM47 transmembrane protein 47 2 2
MIRT551882 EPHA1 EPH receptor A1 2 2
MIRT551917 IGLON5 IgLON family member 5 2 2
MIRT552377 ZNF562 zinc finger protein 562 2 2
MIRT552543 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT553419 TRAF5 TNF receptor associated factor 5 2 2
MIRT554080 SNX4 sorting nexin 4 2 4
MIRT554588 RRAGC Ras related GTP binding C 2 2
MIRT554887 RCC2 regulator of chromosome condensation 2 2 2
MIRT555568 PLCB1 phospholipase C beta 1 2 2
MIRT555819 PCDH11Y protocadherin 11 Y-linked 2 4
MIRT555969 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT556028 MXD1 MAX dimerization protein 1 2 2
MIRT556206 MBNL2 muscleblind like splicing regulator 2 2 2
MIRT556251 MARCH3 membrane associated ring-CH-type finger 3 2 2
MIRT557265 HMGN3 high mobility group nucleosomal binding domain 3 2 2
MIRT557334 HHIP hedgehog interacting protein 2 2
MIRT557427 GXYLT2 glucoside xylosyltransferase 2 2 4
MIRT557537 GPBP1L1 GC-rich promoter binding protein 1 like 1 2 2
MIRT557797 FREM2 FRAS1 related extracellular matrix protein 2 2 2
MIRT557805 FOXP1 forkhead box P1 2 2
MIRT558569 CRIM1 cysteine rich transmembrane BMP regulator 1 2 2
MIRT558734 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT558878 CCSER2 coiled-coil serine rich protein 2 2 2
MIRT558933 CBX1 chromobox 1 2 2
MIRT559133 BTG3 BTG anti-proliferation factor 3 2 4
MIRT559168 BRWD3 bromodomain and WD repeat domain containing 3 2 4
MIRT559618 AMER1 APC membrane recruitment protein 1 2 2
MIRT561627 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT561971 LRRC59 leucine rich repeat containing 59 2 2
MIRT563049 ZNF138 zinc finger protein 138 2 2
MIRT563432 TRIM13 tripartite motif containing 13 2 4
MIRT563540 RBM41 RNA binding motif protein 41 2 2
MIRT564647 ZNF544 zinc finger protein 544 2 2
MIRT567674 EIF5 eukaryotic translation initiation factor 5 2 2
MIRT567755 DLC1 DLC1 Rho GTPase activating protein 2 2
MIRT568267 BICD2 BICD cargo adaptor 2 2 2
MIRT569160 SIGMAR1 sigma non-opioid intracellular receptor 1 2 2
MIRT569179 DMD dystrophin 2 2
MIRT569427 DCAF8 DDB1 and CUL4 associated factor 8 2 2
MIRT569853 RGS5 regulator of G protein signaling 5 2 2
MIRT570554 PLAG1 PLAG1 zinc finger 2 2
MIRT571233 SYT9 synaptotagmin 9 2 2
MIRT572276 KCNJ6 potassium voltage-gated channel subfamily J member 6 2 2
MIRT572539 ZFHX2 zinc finger homeobox 2 2 2
MIRT574271 ZNF350 zinc finger protein 350 2 2
MIRT574428 SMC1A structural maintenance of chromosomes 1A 2 2
MIRT574671 HNRNPDL heterogeneous nuclear ribonucleoprotein D like 2 2
MIRT576699 Hps3 HPS3, biogenesis of lysosomal organelles complex 2 subunit 1 2 2
MIRT607889 SATB1 SATB homeobox 1 2 2
MIRT608846 FGF14 fibroblast growth factor 14 2 6
MIRT608854 SPATA6 spermatogenesis associated 6 2 2
MIRT608879 CNTF ciliary neurotrophic factor 2 6
MIRT608899 ZNF860 zinc finger protein 860 2 2
MIRT608948 C12orf60 chromosome 12 open reading frame 60 2 2
MIRT609029 CDH6 cadherin 6 2 2
MIRT609063 LPP LIM domain containing preferred translocation partner in lipoma 2 4
MIRT612277 ZNF280B zinc finger protein 280B 2 2
MIRT612520 SEPT7 septin 7 2 2
MIRT617202 GREM1 gremlin 1, DAN family BMP antagonist 2 2
MIRT618700 KIF13A kinesin family member 13A 2 2
MIRT619141 AFF2 AF4/FMR2 family member 2 2 2
MIRT621071 RAB11FIP3 RAB11 family interacting protein 3 2 6
MIRT627811 PTCHD1 patched domain containing 1 2 4
MIRT641782 ZBTB20 zinc finger and BTB domain containing 20 2 2
MIRT657645 GPRC5A G protein-coupled receptor class C group 5 member A 2 2
MIRT669313 C16orf72 chromosome 16 open reading frame 72 2 2
MIRT674602 PHKA1 phosphorylase kinase regulatory subunit alpha 1 2 2
MIRT684064 CPPED1 calcineurin like phosphoesterase domain containing 1 2 2
MIRT685149 TACR3 tachykinin receptor 3 2 2
MIRT693446 PIK3CG phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma 2 2
MIRT693808 WDR3 WD repeat domain 3 2 2
MIRT703845 ETV3 ETS variant 3 2 2
MIRT707100 ZNF850 zinc finger protein 850 2 2
MIRT707375 SVIP small VCP interacting protein 2 2
MIRT707467 ROCK2 Rho associated coiled-coil containing protein kinase 2 2 2
MIRT707514 PPP1R16B protein phosphatase 1 regulatory subunit 16B 2 2
MIRT707542 ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif 9 2 2
MIRT707560 CLVS2 clavesin 2 2 2
MIRT708113 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT708217 ADD2 adducin 2 2 2
MIRT710678 MX2 MX dynamin like GTPase 2 2 2
MIRT755898 ZFPM2-AS1 ZFPM2 antisense RNA 1 3 1
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-511-3p Doxorubicin 31703 NSC123127 approved resistant High Anaplastic Thyroid Cancer tissue
hsa-miR-511-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)

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