miRTarBase - #MIRT287408


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pre-miRNA Information
pre-miRNA hsa-mir-552   
Genomic Coordinates chr1: 34669599 - 34669694
Synonyms MIRN552, hsa-mir-552, MIR552
Description Homo sapiens miR-552 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-552-5p
Sequence 25| GUUUAACCUUUUGCCUGUUGG |45
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs76067517 2 dbSNP
rs1395509888 7 dbSNP
rs766113217 8 dbSNP
rs1390014269 9 dbSNP
rs763407724 13 dbSNP
rs921530704 15 dbSNP
rs1191461120 18 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol GPATCH8   
Synonyms GPATC8, KIAA0553
Description G-patch domain containing 8
Transcript NM_001002909   
Expression
Putative miRNA Targets on GPATCH8
3'UTR of GPATCH8
(miRNA target sites are highlighted)		 
>GPATCH8|NM_001002909|3'UTR
   1 GTTGGGGGATGGGATCCTAGGTAGGGCCAGGGGAGGAGACCCATAAATGTTCCCTTGGGGGTGTTGAGCCATTAATACCA
  81 GCAAGTAGAAGCTGGGATGGGCAGTGTCTGACAGCCAAAGAATTGAGTTTTGGCTTGCAGGGGTGGGTTTAGATTTGAAG
 161 TTTGCTTTCAGTTTACTATCAGGGATTTCTTTTTCCTGTCCTCCTCTCAATTTGTCCCTCCCTCTTCTGTGTTTCTAAGC
 241 TAGGGAACACCAGTAAGTGCTACCCACCCCTCTGCAGCAACATCTCCAAACTGTCAAGTTTAGATAATCCCCTCCTCCCT
 321 CTGCTTTTTTCCTCTGCTCTTCCCTTCTGTAAATTTTAAAACATTTTCCTCCCCTCTGGCCAGTGGGTTGTCACCAGAGC
 401 ACTTGCTGTGGGCCCATCTGGTCTTGCCTTCTCAGCGCCACAGGGAAGGCCAAGCTGTTCTAGTGGTGGAAGTGCCACCA
 481 TTTTGGGGTAGTATCTTTGACCATCTTTGGTGACGTTACGTTATCCCAGGTGAGGTGGAAAGCGTCTCACCTGGAACCTG
 561 ATATAACTCAGGCTGCAATTCCATCCAGTTCCCACATCAACGGAGCCACACATTTGGCACTGTTATCTTGGTATCCCTCA
 641 TCCCAGAAGAGGCATCTCCATATCCCAGAAAAGAAGATCCTATCATGAATAAAAGCTGTATGGCCCAGAGAGGAGCTCAT
 721 GTGTCTAAAGTGAAGGGTATATTTTCTTCTGTTGTGTTGATGTTTCCTTCTTAATTTATAGGATTTTTTTAATGTAAAAA
 801 ATTGCACTGAACTCTATAAACGTAAATGCTGCTTTTTGTAGCTCATATAAAAAAGGTTCCATATTTGTAGTATACTGCAA
 881 TAATATTTTTTACATCCAGCTCTTTAAGTGATCCTCGTTCTGGTGGCTTTGTGTAAATATGTTTGCCCTAGTTGAATTAA
 961 GAAACTCTAAAGGTTATAAAATGAAAACAAAAAATAAAATATTTGTTTTCTGCTAGATGCAAAACTGACTAAGCATGTAT
1041 ATTTTACCAAACTTATGTATTTTTTGAAGTTATGAACTATAAAATGTTAAAACATTTTTTGCTGGGACAAAATGTTAAGT
1121 AATTTGCAGTATGTAGTGCCCCCAGTATTGGGATTTTTGAGCTAATGGGCAGCAGTCAGCTGGGGGCTTCTGAGGGATGC
1201 TCATCTTTAACAGTCTCCCTCATGTACTTTTGCTGTTTTACACAGAGAAACAGGTAGACCCCACAGAGGAGAAGGAGGGG
1281 ATTCAACAGCTTTATTGTCTGGAAGCAGTGAGATTTGGTGATTGTCTGGGGGGATTCCTGGGTTTCCCTGGGTACCTTGT
1361 TCCAGGCAGTCAGTCCATTTGCCTTCCTAGTACTTAGCCCCCTCTGACAATTTTTTTTTTAATGTGCCTTTTGGGTTGGT
1441 AGAAACGGAAGTAGAAGTAGGCTGGAGGATGAGTTGGGACAGTCTTCCTTTTGTTGGGAGGTGAGCACATTTACAGATAT
1521 TTTGCTTCATAGTTTCCATGCCCTCTGCCCAGCTCAGTTTAGACAGTAAACGTTCCTTGTTTCTTTTCTCCCATGACACT
1601 GACAAGAGGAATTACCACCTCAGCCTCTTTTGCCCCTCTTCTTGCCTTTCACCCAGGCTCTCAGCCCTAATTAACACACT
1681 GACCCAAAGGTGCTTGTGTTGCAGGTCCCATCTCCTTTGATGAGGTTAACAATTCCCACTTTGGCATTTTCCTAACTATT
1761 CGTGTGGCTAGAATTGGTTGGTTGGTCACTTGACAAGAAAAACCATACTTACCTGGGCCAAGGCTCTGTTCCTGCCTTCG
1841 CAAATTCTCAAAAGAGTAAAGTTTATGAAAAGAAAGTGGCAGGCAAACACAACTCTTGACTGCCCTCCCACCCTCCTACC
1921 TGTTCAGTACTCATCTGATTCAGAAGCATCACTTCTTGGATAACTAGCACTGGAAAAATGAAATCATCTGTGTAAGTGAA
2001 GGGACTCATTTTTCTTTGCTTTCAGCCCATGTAAATAAATAATACAGTATTAACATTTTCGTGCTGCTTCCCATTAGCTT
2081 GTAGATTGAGCCATACTCTGGCTGCCTCTTTGCCTTCCTAGGGGCATTTTCTTTAACTTCCAGAATAGTGATTTTAAAAG
2161 TAAAAATAAAAATAAACCTTACTTACAAGCATAACAGATTGTATTTAACTTTATCACATATGATAGAGATATATATGCTG
2241 TAAAATGAGGGAAAGGAACTTTCTAATAAACCAATGATTTGTGGAAACTTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ggUUG-UCCGUUUUCCAAUUUg 5'
            ||| |  :|||| |||||| 
Target 5' tgAACTA--TAAAATGTTAAAa 3'
 1073 - 1092 131.00 -5.10
2 
miRNA  3' gguuguccgUUUUCCAAUUug 5'
                   | :|||||||  
Target 5' tctcctttgATGAGGTTAAca 3'
 1711 - 1731 128.00 -7.60
3 
miRNA  3' ggUUGUCCGUUUUCCAAUUUg 5'
            :| |  | |||||||| | 
Target 5' aaGAAACTCTAAAGGTTATAa 3'
 959 - 979 127.00 -6.82
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30448569 52 COSMIC
COSN30171871 105 COSMIC
COSN19658672 122 COSMIC
COSN30165209 125 COSMIC
COSN31507905 133 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs993326628 2 dbSNP
rs1395797854 6 dbSNP
rs762547138 8 dbSNP
rs1391505636 9 dbSNP
rs1467615794 11 dbSNP
rs1203092995 12 dbSNP
rs1165141003 13 dbSNP
rs867103452 14 dbSNP
rs775141892 21 dbSNP
rs1411795246 23 dbSNP
rs769229037 26 dbSNP
rs1473752335 29 dbSNP
rs200128147 31 dbSNP
rs1363693652 32 dbSNP
rs781177916 35 dbSNP
rs370530987 36 dbSNP
rs770824294 38 dbSNP
rs1434983818 41 dbSNP
rs369498242 43 dbSNP
rs1326480776 50 dbSNP
rs1267355137 52 dbSNP
rs569257493 53 dbSNP
rs758281471 57 dbSNP
rs530207828 58 dbSNP
rs561838924 60 dbSNP
rs748910017 62 dbSNP
rs779343082 64 dbSNP
rs1343848694 66 dbSNP
rs777431073 79 dbSNP
rs1388033844 80 dbSNP
rs1222344269 84 dbSNP
rs1008034749 86 dbSNP
rs1187890956 87 dbSNP
rs1459325581 95 dbSNP
rs914585691 98 dbSNP
rs755094128 103 dbSNP
rs1477485711 104 dbSNP
rs755892990 110 dbSNP
rs753911891 112 dbSNP
rs1463132059 113 dbSNP
rs766876139 114 dbSNP
rs1209253818 117 dbSNP
rs889136557 120 dbSNP
rs1454472286 128 dbSNP
rs1403844840 131 dbSNP
rs1336055463 138 dbSNP
rs1276227792 139 dbSNP
rs955972576 140 dbSNP
rs761043111 141 dbSNP
rs1386936029 142 dbSNP
rs750958709 143 dbSNP
rs1327181464 146 dbSNP
rs767815210 147 dbSNP
rs1390287557 148 dbSNP
rs762174859 153 dbSNP
rs1364513491 154 dbSNP
rs1321340789 157 dbSNP
rs971628239 160 dbSNP
rs1437901024 170 dbSNP
rs1404614850 173 dbSNP
rs1228654136 184 dbSNP
rs765260389 189 dbSNP
rs1156421532 198 dbSNP
rs1052164970 203 dbSNP
rs567097021 207 dbSNP
rs1012672645 208 dbSNP
rs1273795313 209 dbSNP
rs1489418781 211 dbSNP
rs1415337602 214 dbSNP
rs1427734868 217 dbSNP
rs1173921683 223 dbSNP
rs887491268 224 dbSNP
rs775123608 227 dbSNP
rs769494701 250 dbSNP
rs755532852 251 dbSNP
rs1472502093 252 dbSNP
rs1465872788 255 dbSNP
rs1241806075 256 dbSNP
rs78265957 262 dbSNP
rs1235598538 263 dbSNP
rs1209372458 264 dbSNP
rs550971153 265 dbSNP
rs192580684 267 dbSNP
rs1280526817 270 dbSNP
rs529039919 272 dbSNP
rs1293408574 275 dbSNP
rs1052674676 281 dbSNP
rs993145064 284 dbSNP
rs1409836002 287 dbSNP
rs1341799550 291 dbSNP
rs770507690 295 dbSNP
rs754278869 296 dbSNP
rs1227629205 299 dbSNP
rs1313119172 303 dbSNP
rs1323479464 304 dbSNP
rs1037682963 309 dbSNP
rs1377081356 309 dbSNP
rs1284083720 314 dbSNP
rs746862751 315 dbSNP
rs1264753169 319 dbSNP
rs1361239970 323 dbSNP
rs75756764 324 dbSNP
rs547168928 325 dbSNP
rs528704127 326 dbSNP
rs560253877 332 dbSNP
rs1189157314 344 dbSNP
rs1450748271 349 dbSNP
rs1416445213 359 dbSNP
rs545144890 363 dbSNP
rs1164701911 365 dbSNP
rs561561599 372 dbSNP
rs914638007 373 dbSNP
rs1473106927 374 dbSNP
rs1429895905 375 dbSNP
rs1238979648 380 dbSNP
rs915580703 382 dbSNP
rs1380355735 393 dbSNP
rs1314288783 394 dbSNP
rs1202836892 398 dbSNP
rs1482615099 399 dbSNP
rs1275543312 402 dbSNP
rs1207602972 407 dbSNP
rs1319953607 408 dbSNP
rs990130623 409 dbSNP
rs1408813683 411 dbSNP
rs1229363650 413 dbSNP
rs562535266 415 dbSNP
rs959693689 418 dbSNP
rs1409521629 427 dbSNP
rs1351520944 433 dbSNP
rs1308207964 434 dbSNP
rs188060173 436 dbSNP
rs760944572 437 dbSNP
rs971938344 443 dbSNP
rs1272547691 444 dbSNP
rs573927607 445 dbSNP
rs555380310 449 dbSNP
rs1482490980 451 dbSNP
rs1419872215 455 dbSNP
rs1181622069 457 dbSNP
rs779946357 460 dbSNP
rs1472121674 463 dbSNP
rs1249258991 466 dbSNP
rs1252302488 467 dbSNP
rs1451844408 471 dbSNP
rs773060282 487 dbSNP
rs1487652743 488 dbSNP
rs767294512 497 dbSNP
rs1016482958 498 dbSNP
rs1222322971 502 dbSNP
rs1323585193 504 dbSNP
rs1023228689 505 dbSNP
rs1266737496 509 dbSNP
rs1228341876 510 dbSNP
rs991292019 515 dbSNP
rs1290637019 519 dbSNP
rs1247475483 520 dbSNP
rs761495097 533 dbSNP
rs1392766707 535 dbSNP
rs768083579 536 dbSNP
rs1292599553 540 dbSNP
rs540000623 542 dbSNP
rs750965213 543 dbSNP
rs1396076582 544 dbSNP
rs1007650951 550 dbSNP
rs1456687443 553 dbSNP
rs774033168 557 dbSNP
rs1412398284 561 dbSNP
rs1027393300 563 dbSNP
rs572719339 564 dbSNP
rs764838408 572 dbSNP
rs759072706 573 dbSNP
rs1290765455 575 dbSNP
rs776369178 578 dbSNP
rs1489477447 586 dbSNP
rs372057729 587 dbSNP
rs1246316393 591 dbSNP
rs1030407376 600 dbSNP
rs1465796815 601 dbSNP
rs768025834 605 dbSNP
rs1018574950 610 dbSNP
rs885757 611 dbSNP
rs885758 612 dbSNP
rs1231445178 614 dbSNP
rs1311981261 621 dbSNP
rs1293410808 622 dbSNP
rs760296741 626 dbSNP
rs1426879590 628 dbSNP
rs1052705429 639 dbSNP
rs1372516075 640 dbSNP
rs749284246 642 dbSNP
rs1434276736 644 dbSNP
rs1402736478 646 dbSNP
rs1049905206 649 dbSNP
rs1389362965 658 dbSNP
rs1458560461 659 dbSNP
rs1290565289 661 dbSNP
rs932801118 662 dbSNP
rs1376878743 665 dbSNP
rs773009678 674 dbSNP
rs1455774935 687 dbSNP
rs1388391705 695 dbSNP
rs893247991 698 dbSNP
rs775282622 700 dbSNP
rs1218883792 703 dbSNP
rs769685097 705 dbSNP
rs768034898 713 dbSNP
rs879921893 719 dbSNP
rs1483103261 721 dbSNP
rs1257008659 723 dbSNP
rs948245694 725 dbSNP
rs1349684696 727 dbSNP
rs772184433 734 dbSNP
rs1226954266 735 dbSNP
rs747917493 737 dbSNP
rs184802403 739 dbSNP
rs992579603 741 dbSNP
rs1473485940 746 dbSNP
rs1401196657 759 dbSNP
rs1303276508 760 dbSNP
rs1201788395 766 dbSNP
rs1436798864 770 dbSNP
rs1405855352 772 dbSNP
rs1489930076 773 dbSNP
rs915807351 781 dbSNP
rs991349566 790 dbSNP
rs1348236126 791 dbSNP
rs755179686 791 dbSNP
rs1366725600 792 dbSNP
rs1168201236 797 dbSNP
rs1205584338 801 dbSNP
rs1450123064 802 dbSNP
rs751926618 804 dbSNP
rs1374887783 805 dbSNP
rs1435764508 809 dbSNP
rs764413825 812 dbSNP
rs1423790130 813 dbSNP
rs1352549261 816 dbSNP
rs768592358 821 dbSNP
rs749410501 822 dbSNP
rs971969376 826 dbSNP
rs1271989118 834 dbSNP
rs963231086 838 dbSNP
rs1357438923 840 dbSNP
rs1204029351 845 dbSNP
rs536960858 846 dbSNP
rs1342224240 854 dbSNP
rs145310816 856 dbSNP
rs1242507420 860 dbSNP
rs533958974 873 dbSNP
rs986403161 877 dbSNP
rs1313357537 883 dbSNP
rs1416320291 886 dbSNP
rs567921280 893 dbSNP
rs756147407 896 dbSNP
rs372813786 898 dbSNP
rs746021383 914 dbSNP
rs557366304 915 dbSNP
rs535483665 916 dbSNP
rs192968633 917 dbSNP
rs1410788080 918 dbSNP
rs1457833352 920 dbSNP
rs546340018 921 dbSNP
rs1369494639 922 dbSNP
rs1167744928 926 dbSNP
rs1008542743 937 dbSNP
rs955839975 939 dbSNP
rs1028516522 940 dbSNP
rs1251608591 940 dbSNP
rs148844931 941 dbSNP
rs1438111857 950 dbSNP
rs528669072 952 dbSNP
rs1252027387 956 dbSNP
rs1207489940 959 dbSNP
rs779099307 960 dbSNP
rs1355042863 962 dbSNP
rs187337402 964 dbSNP
rs1235086664 965 dbSNP
rs752093968 966 dbSNP
rs374419419 973 dbSNP
rs757841956 973 dbSNP
rs1343614293 982 dbSNP
rs1287538291 983 dbSNP
rs1410666529 994 dbSNP
rs1202624253 995 dbSNP
rs548169366 995 dbSNP
rs1178707834 1002 dbSNP
rs764394790 1002 dbSNP
rs1337815723 1004 dbSNP
rs1321846422 1005 dbSNP
rs1235731462 1022 dbSNP
rs780225432 1031 dbSNP
rs999351878 1031 dbSNP
rs1386218282 1033 dbSNP
rs1030971914 1037 dbSNP
rs1001117245 1041 dbSNP
rs950067814 1043 dbSNP
rs904142744 1047 dbSNP
rs1416585782 1048 dbSNP
rs915864890 1053 dbSNP
rs1436489773 1055 dbSNP
rs778019612 1055 dbSNP
rs371861723 1056 dbSNP
rs1045314907 1057 dbSNP
rs1160441702 1069 dbSNP
rs1183253459 1070 dbSNP
rs753425838 1072 dbSNP
rs1055718293 1073 dbSNP
rs930508774 1076 dbSNP
rs1196340963 1078 dbSNP
rs1012861050 1079 dbSNP
rs920436082 1086 dbSNP
rs1248170242 1087 dbSNP
rs896635917 1088 dbSNP
rs766113266 1092 dbSNP
rs971896011 1093 dbSNP
rs1253144219 1094 dbSNP
rs756549462 1101 dbSNP
rs183442963 1102 dbSNP
rs772885894 1105 dbSNP
rs754437748 1106 dbSNP
rs1378464563 1110 dbSNP
rs1352580266 1122 dbSNP
rs938405670 1123 dbSNP
rs1273262169 1125 dbSNP
rs1232869427 1132 dbSNP
rs766783789 1133 dbSNP
rs767163653 1137 dbSNP
rs1458036868 1138 dbSNP
rs1035947712 1141 dbSNP
rs1323157240 1144 dbSNP
rs941698323 1145 dbSNP
rs1387076723 1146 dbSNP
rs1380095956 1150 dbSNP
rs1330801043 1159 dbSNP
rs1388468940 1161 dbSNP
rs909149541 1162 dbSNP
rs1331132038 1164 dbSNP
rs371782273 1166 dbSNP
rs1288580931 1173 dbSNP
rs986046058 1184 dbSNP
rs1240813969 1187 dbSNP
rs1337842627 1189 dbSNP
rs1402759238 1193 dbSNP
rs533086533 1194 dbSNP
rs1170426056 1196 dbSNP
rs1322571967 1199 dbSNP
rs997056225 1201 dbSNP
rs1403507416 1202 dbSNP
rs774440476 1222 dbSNP
rs562338757 1223 dbSNP
rs749176137 1226 dbSNP
rs544150537 1227 dbSNP
rs1447147867 1233 dbSNP
rs1247269455 1238 dbSNP
rs957582511 1249 dbSNP
rs956733992 1256 dbSNP
rs1216451999 1261 dbSNP
rs1428790439 1263 dbSNP
rs756590008 1265 dbSNP
rs903290384 1270 dbSNP
rs1410451764 1271 dbSNP
rs1276290597 1272 dbSNP
rs1453647576 1275 dbSNP
rs1200086844 1288 dbSNP
rs192512074 1297 dbSNP
rs1000903815 1298 dbSNP
rs1305912251 1304 dbSNP
rs561617530 1305 dbSNP
rs1045808792 1306 dbSNP
rs1226184318 1307 dbSNP
rs968066195 1312 dbSNP
rs775566598 1315 dbSNP
rs1024332772 1318 dbSNP
rs770107270 1319 dbSNP
rs1357757182 1322 dbSNP
rs540159966 1324 dbSNP
rs1387945052 1325 dbSNP
rs572680991 1326 dbSNP
rs1344467674 1327 dbSNP
rs1014710989 1328 dbSNP
rs766113388 1329 dbSNP
rs1375615824 1330 dbSNP
rs1314856332 1332 dbSNP
rs557567368 1333 dbSNP
rs1265890980 1334 dbSNP
rs1455546681 1334 dbSNP
rs757352480 1341 dbSNP
rs1389038351 1349 dbSNP
rs930561086 1351 dbSNP
rs540302167 1362 dbSNP
rs1235505159 1367 dbSNP
rs896661278 1368 dbSNP
rs1184848363 1373 dbSNP
rs1056523641 1390 dbSNP
rs1418794896 1394 dbSNP
rs758554667 1394 dbSNP
rs1485878845 1399 dbSNP
rs1282688018 1401 dbSNP
rs1203306101 1402 dbSNP
rs1244858062 1403 dbSNP
rs1341517253 1403 dbSNP
rs1273855347 1408 dbSNP
rs1216826095 1410 dbSNP
rs1377704197 1411 dbSNP
rs940524940 1413 dbSNP
rs1364622927 1420 dbSNP
rs1370919506 1421 dbSNP
rs750617614 1421 dbSNP
rs765540121 1421 dbSNP
rs1284140406 1422 dbSNP
rs1390550655 1423 dbSNP
rs1415714164 1424 dbSNP
rs1357796155 1426 dbSNP
rs1314282427 1427 dbSNP
rs112724419 1434 dbSNP
rs931692459 1435 dbSNP
rs1353408088 1438 dbSNP
rs778317561 1446 dbSNP
rs1002581559 1447 dbSNP
rs749942391 1449 dbSNP
rs1231336490 1461 dbSNP
rs758674790 1466 dbSNP
rs1480543645 1470 dbSNP
rs989076933 1477 dbSNP
rs1411450613 1494 dbSNP
rs957636312 1500 dbSNP
rs897619589 1509 dbSNP
rs753154316 1510 dbSNP
rs187567430 1513 dbSNP
rs1180253601 1514 dbSNP
rs779541210 1519 dbSNP
rs537489505 1520 dbSNP
rs755748909 1531 dbSNP
rs1470316900 1536 dbSNP
rs1206643587 1539 dbSNP
rs1320008812 1541 dbSNP
rs1289746891 1546 dbSNP
rs1234468408 1547 dbSNP
rs941723019 1554 dbSNP
rs1337383957 1556 dbSNP
rs1286915867 1564 dbSNP
rs1314244838 1565 dbSNP
rs1407598030 1566 dbSNP
rs1372083416 1571 dbSNP
rs1366037113 1572 dbSNP
rs908852611 1576 dbSNP
rs967569385 1578 dbSNP
rs1050783708 1579 dbSNP
rs1024855829 1580 dbSNP
rs1211318596 1587 dbSNP
rs750824617 1590 dbSNP
rs145537920 1591 dbSNP
rs1460225360 1594 dbSNP
rs1298395642 1598 dbSNP
rs762215401 1606 dbSNP
rs894536010 1606 dbSNP
rs750119243 1608 dbSNP
rs767957402 1616 dbSNP
rs866093714 1618 dbSNP
rs1325111873 1619 dbSNP
rs1461929918 1623 dbSNP
rs767075918 1625 dbSNP
rs1419758723 1626 dbSNP
rs923099435 1628 dbSNP
rs1034370883 1632 dbSNP
rs1156757404 1633 dbSNP
rs761409961 1635 dbSNP
rs1408903426 1636 dbSNP
rs1417000554 1644 dbSNP
rs751540757 1649 dbSNP
rs1176274094 1650 dbSNP
rs1360716221 1650 dbSNP
rs1487520782 1655 dbSNP
rs557182307 1657 dbSNP
rs535806687 1660 dbSNP
rs1268466535 1663 dbSNP
rs899112577 1668 dbSNP
rs1266793070 1669 dbSNP
rs762636968 1674 dbSNP
rs761603593 1676 dbSNP
rs1307202652 1680 dbSNP
rs940556914 1684 dbSNP
rs1364835554 1686 dbSNP
rs1203422864 1689 dbSNP
rs1302144993 1690 dbSNP
rs1441528712 1692 dbSNP
rs1396524206 1693 dbSNP
rs769507905 1700 dbSNP
rs924053658 1703 dbSNP
rs1345593689 1705 dbSNP
rs112471632 1710 dbSNP
rs1051998568 1713 dbSNP
rs1431703847 1714 dbSNP
rs1394541978 1715 dbSNP
rs1194273966 1724 dbSNP
rs931744985 1725 dbSNP
rs968472816 1732 dbSNP
rs553678621 1736 dbSNP
rs1246680537 1742 dbSNP
rs1412678032 1744 dbSNP
rs1458770902 1745 dbSNP
rs1208673841 1752 dbSNP
rs1486384869 1754 dbSNP
rs1344687954 1757 dbSNP
rs1437215812 1758 dbSNP
rs770993057 1762 dbSNP
rs368133857 1764 dbSNP
rs1217489182 1770 dbSNP
rs1343872506 1780 dbSNP
rs1310136704 1782 dbSNP
rs1279180432 1786 dbSNP
rs1234298725 1787 dbSNP
rs1443937425 1788 dbSNP
rs796643443 1790 dbSNP
rs1295254926 1794 dbSNP
rs1381632029 1797 dbSNP
rs1289353325 1800 dbSNP
rs1331612328 1804 dbSNP
rs747147869 1810 dbSNP
rs1290484907 1812 dbSNP
rs1284103275 1815 dbSNP
rs936327876 1819 dbSNP
rs568923129 1820 dbSNP
rs1464367589 1831 dbSNP
rs1375002186 1832 dbSNP
rs1221657387 1836 dbSNP
rs1174526695 1839 dbSNP
rs551890058 1840 dbSNP
rs1388451587 1843 dbSNP
rs1432806805 1850 dbSNP
rs1193060568 1851 dbSNP
rs1470998978 1854 dbSNP
rs1429694348 1855 dbSNP
rs1260607971 1859 dbSNP
rs1156753401 1861 dbSNP
rs1264285685 1861 dbSNP
rs1407151368 1861 dbSNP
rs1180424480 1865 dbSNP
rs960951132 1868 dbSNP
rs1035232877 1869 dbSNP
rs1406097563 1871 dbSNP
rs1485552487 1874 dbSNP
rs1279115337 1875 dbSNP
rs1360546302 1877 dbSNP
rs1364003736 1879 dbSNP
rs1211189188 1882 dbSNP
rs535371881 1888 dbSNP
rs754382178 1892 dbSNP
rs1349396000 1900 dbSNP
rs926238185 1902 dbSNP
rs977705500 1903 dbSNP
rs1244375004 1905 dbSNP
rs1226604022 1907 dbSNP
rs182637174 1918 dbSNP
rs968001165 1920 dbSNP
rs1024491189 1924 dbSNP
rs775489270 1925 dbSNP
rs1014644523 1926 dbSNP
rs1307943441 1927 dbSNP
rs778119729 1932 dbSNP
rs1394023482 1936 dbSNP
rs1354601953 1938 dbSNP
rs1313688496 1941 dbSNP
rs1416898999 1947 dbSNP
rs1005939946 1948 dbSNP
rs1221278844 1950 dbSNP
rs1018357 1955 dbSNP
rs1439406638 1957 dbSNP
rs1359387190 1964 dbSNP
rs1368782062 1969 dbSNP
rs552848418 1972 dbSNP
rs14977 1976 dbSNP
rs958803884 1992 dbSNP
rs772673963 1995 dbSNP
rs1163329961 2001 dbSNP
rs1034423247 2002 dbSNP
rs1383504387 2003 dbSNP
rs1258720910 2005 dbSNP
rs1424023268 2006 dbSNP
rs1169481672 2008 dbSNP
rs1188188777 2013 dbSNP
rs1486487842 2016 dbSNP
rs1247792531 2017 dbSNP
rs764576709 2018 dbSNP
rs765355306 2028 dbSNP
rs774112681 2030 dbSNP
rs748630793 2039 dbSNP
rs1405793549 2040 dbSNP
rs759100375 2043 dbSNP
rs1450852066 2044 dbSNP
rs887447847 2046 dbSNP
rs763725094 2055 dbSNP
rs755308375 2059 dbSNP
rs762353311 2060 dbSNP
rs140718505 2061 dbSNP
rs568895402 2064 dbSNP
rs1292273659 2067 dbSNP
rs901790366 2079 dbSNP
rs1423824046 2090 dbSNP
rs756816661 2093 dbSNP
rs1167627775 2100 dbSNP
rs769620858 2117 dbSNP
rs1193910825 2125 dbSNP
rs1471815801 2127 dbSNP
rs1015298060 2135 dbSNP
rs1040303542 2145 dbSNP
rs1180670679 2147 dbSNP
rs1437880568 2151 dbSNP
rs1004808695 2156 dbSNP
rs1442749905 2156 dbSNP
rs935177722 2160 dbSNP
rs1444148749 2166 dbSNP
rs1211737090 2167 dbSNP
rs1390678525 2172 dbSNP
rs745765168 2175 dbSNP
rs1375050772 2177 dbSNP
rs751168416 2177 dbSNP
rs1273751772 2179 dbSNP
rs773861720 2187 dbSNP
rs1167513288 2189 dbSNP
rs979527502 2191 dbSNP
rs1215262249 2197 dbSNP
rs532156150 2199 dbSNP
rs946788544 2204 dbSNP
rs1240091094 2209 dbSNP
rs1337583645 2214 dbSNP
rs1299375166 2219 dbSNP
rs1372017592 2220 dbSNP
rs900289576 2221 dbSNP
rs763911152 2225 dbSNP
rs1053465158 2227 dbSNP
rs1328552235 2228 dbSNP
rs1224827548 2230 dbSNP
rs936386541 2231 dbSNP
rs923639440 2232 dbSNP
rs1384756064 2233 dbSNP
rs1225104896 2235 dbSNP
rs776432226 2236 dbSNP
rs1157596360 2237 dbSNP
rs1042418692 2242 dbSNP
rs916572559 2247 dbSNP
rs990876004 2255 dbSNP
rs1263981849 2256 dbSNP
rs1365014378 2260 dbSNP
rs946339676 2262 dbSNP
rs1220685579 2266 dbSNP
rs1191143701 2272 dbSNP
rs917473717 2274 dbSNP
rs960983322 2288 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000591680.1 | 3UTR | UUAAAACAUUUUUUGCUGGGACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
118 hsa-miR-552-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT060509 PPP6R3 protein phosphatase 6 regulatory subunit 3 2 2
MIRT061011 C1ORF21 chromosome 1 open reading frame 21 2 6
MIRT090823 MBNL1 muscleblind like splicing regulator 1 2 4
MIRT126569 MASTL microtubule associated serine/threonine kinase like 2 2
MIRT147688 CBX4 chromobox 4 2 4
MIRT191746 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT202397 GPCPD1 glycerophosphocholine phosphodiesterase 1 2 2
MIRT231334 XRRA1 X-ray radiation resistance associated 1 2 8
MIRT241355 SLC16A1 solute carrier family 16 member 1 2 2
MIRT280627 BCL11B B-cell CLL/lymphoma 11B 2 2
MIRT287408 GPATCH8 G-patch domain containing 8 2 2
MIRT314310 FCHO2 FCH domain only 2 2 2
MIRT321751 ANKRD46 ankyrin repeat domain 46 2 2
MIRT329335 ETF1 eukaryotic translation termination factor 1 2 2
MIRT346611 PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 2 6
MIRT349189 ZNF557 zinc finger protein 557 2 2
MIRT357416 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT359670 NUS1 NUS1 dehydrodolichyl diphosphate synthase subunit 2 2
MIRT442751 PLAG1 PLAG1 zinc finger 2 6
MIRT446639 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT450820 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT452304 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 2
MIRT468814 RSRC2 arginine and serine rich coiled-coil 2 2 6
MIRT471878 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 6
MIRT472681 MYCBP MYC binding protein 2 4
MIRT473123 MLLT10 MLLT10, histone lysine methyltransferase DOT1L cofactor 2 2
MIRT477434 EML4 echinoderm microtubule associated protein like 4 2 4
MIRT501254 SECISBP2L SECIS binding protein 2 like 2 2
MIRT501586 PLCG1 phospholipase C gamma 1 2 2
MIRT503371 SCAMP1 secretory carrier membrane protein 1 2 2
MIRT504358 ARID1B AT-rich interaction domain 1B 2 6
MIRT504421 SHC4 SHC adaptor protein 4 2 6
MIRT505497 SRSF1 serine and arginine rich splicing factor 1 2 4
MIRT505792 RSBN1 round spermatid basic protein 1 2 8
MIRT506471 NAA25 N(alpha)-acetyltransferase 25, NatB auxiliary subunit 2 4
MIRT507372 EPS8 epidermal growth factor receptor pathway substrate 8 2 2
MIRT510850 RAN RAN, member RAS oncogene family 2 8
MIRT510986 PER1 period circadian clock 1 2 4
MIRT512987 SEZ6L seizure related 6 homolog like 2 4
MIRT514937 GPR141 G protein-coupled receptor 141 2 2
MIRT522131 NRBF2 nuclear receptor binding factor 2 2 6
MIRT524300 CTC1 CST telomere replication complex component 1 2 8
MIRT526363 LSAMP limbic system-associated membrane protein 2 2
MIRT526441 RBM48 RNA binding motif protein 48 2 2
MIRT526534 MDM2 MDM2 proto-oncogene 2 4
MIRT528065 HES2 hes family bHLH transcription factor 2 2 2
MIRT531043 TIPARP TCDD inducible poly(ADP-ribose) polymerase 2 2
MIRT532313 FKBP9 FK506 binding protein 9 2 4
MIRT533196 WASF3 WAS protein family member 3 2 4
MIRT535701 NAV1 neuron navigator 1 2 5
MIRT536791 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT537228 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT538247 CUX2 cut like homeobox 2 2 2
MIRT538476 CLOCK clock circadian regulator 2 2
MIRT538798 C2CD5 C2 calcium dependent domain containing 5 2 2
MIRT539031 ATXN7L1 ataxin 7 like 1 2 2
MIRT542043 SLC25A46 solute carrier family 25 member 46 2 2
MIRT543093 TNFRSF11A TNF receptor superfamily member 11a 2 2
MIRT543545 INTS2 integrator complex subunit 2 2 2
MIRT554332 SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 2 4
MIRT556070 MRFAP1 Morf4 family associated protein 1 2 2
MIRT558125 ENPP4 ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative) 2 2
MIRT559132 BTG3 BTG anti-proliferation factor 3 2 4
MIRT559423 ASF1A anti-silencing function 1A histone chaperone 2 2
MIRT560026 ZNF780A zinc finger protein 780A 2 2
MIRT566128 RACGAP1 Rac GTPase activating protein 1 2 2
MIRT566441 PHF13 PHD finger protein 13 2 2
MIRT568541 AKT3 AKT serine/threonine kinase 3 2 2
MIRT568626 ACVR2A activin A receptor type 2A 2 2
MIRT576599 Nav1 neuron navigator 1 2 4
MIRT609438 USP27X ubiquitin specific peptidase 27, X-linked 2 2
MIRT611441 NRIP3 nuclear receptor interacting protein 3 2 2
MIRT613007 GABRB1 gamma-aminobutyric acid type A receptor beta1 subunit 2 2
MIRT614149 CEP97 centrosomal protein 97 2 2
MIRT614580 LHX1 LIM homeobox 1 2 2
MIRT615631 ATF6 activating transcription factor 6 2 4
MIRT616115 NDUFS1 NADH:ubiquinone oxidoreductase core subunit S1 2 2
MIRT620351 WDR75 WD repeat domain 75 2 2
MIRT621733 TNPO2 transportin 2 2 2
MIRT623718 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT626107 MYLIP myosin regulatory light chain interacting protein 2 2
MIRT630779 CRLS1 cardiolipin synthase 1 2 2
MIRT632585 PLCL1 phospholipase C like 1 (inactive) 2 2
MIRT635161 HOXD12 homeobox D12 2 2
MIRT635878 SIX3 SIX homeobox 3 2 2
MIRT636941 LIMS3 LIM zinc finger domain containing 3 2 2
MIRT637007 LIMS3L LIM zinc finger domain containing 4 2 2
MIRT639202 LRRC9 leucine rich repeat containing 9 2 4
MIRT639388 PKHD1 PKHD1, fibrocystin/polyductin 2 2
MIRT639543 SMCR7L mitochondrial elongation factor 1 1 1
MIRT642071 FUT11 fucosyltransferase 11 2 2
MIRT642567 GDPGP1 GDP-D-glucose phosphorylase 1 2 2
MIRT643035 SNX24 sorting nexin 24 2 2
MIRT648372 SMPD1 sphingomyelin phosphodiesterase 1 2 2
MIRT648529 KIAA1143 KIAA1143 2 2
MIRT652184 TRIM44 tripartite motif containing 44 2 2
MIRT652945 SYNC syncoilin, intermediate filament protein 2 2
MIRT657012 KCNK5 potassium two pore domain channel subfamily K member 5 2 2
MIRT658993 DIP2C disco interacting protein 2 homolog C 2 2
MIRT659629 CDKN2AIP CDKN2A interacting protein 2 2
MIRT659769 CCBE1 collagen and calcium binding EGF domains 1 2 2
MIRT660527 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 2
MIRT668526 ERP44 endoplasmic reticulum protein 44 2 2
MIRT687184 PRKAR1A protein kinase cAMP-dependent type I regulatory subunit alpha 2 2
MIRT696280 IER3IP1 immediate early response 3 interacting protein 1 2 2
MIRT697673 WASL Wiskott-Aldrich syndrome like 2 2
MIRT697716 VKORC1L1 vitamin K epoxide reductase complex subunit 1 like 1 2 2
MIRT699719 SESTD1 SEC14 and spectrin domain containing 1 2 2
MIRT701220 OGDH oxoglutarate dehydrogenase 2 2
MIRT701436 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT701554 NANOS1 nanos C2HC-type zinc finger 1 2 2
MIRT707559 CLVS2 clavesin 2 2 2
MIRT707925 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT711148 NAA15 N(alpha)-acetyltransferase 15, NatA auxiliary subunit 2 2
MIRT719256 CD44 CD44 molecule (Indian blood group) 2 2
MIRT719810 TXNDC17 thioredoxin domain containing 17 2 2
MIRT722650 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT723901 PEX11A peroxisomal biogenesis factor 11 alpha 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-552 Ursodeoxycholic acid (UDCA) approved 31401 Microarray rat Liver 20689055 2010 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-552 Fluorouracil 3385 NSC19893 approved resistant cell line (KYSE)

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