miRTarBase - #MIRT293253


—
pre-miRNA Information
pre-miRNA hsa-mir-4259   
Genomic Coordinates chr1: 159899979 - 159900079
Description Homo sapiens miR-4259 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4259
Sequence 70| CAGUUGGGUCUAGGGGUCAGGA |91
Evidence Experimental
Experiments SOLiD
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1237551241 4 dbSNP
rs772339482 8 dbSNP
rs1314022637 15 dbSNP
rs1414601728 19 dbSNP
rs746067692 20 dbSNP
rs779101228 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol DR1   
Synonyms NC2, NC2-BETA, NC2B, NCB2
Description down-regulator of transcription 1
Transcript NM_001938   
Expression
Putative miRNA Targets on DR1
3'UTR of DR1
(miRNA target sites are highlighted)		 
>DR1|NM_001938|3'UTR
   1 AATTCACCAGCTGAGTTTCTATTTCTTCTATAAATGTTTTTCCCTGCACAACAAAAACAGTGAAAGAAATGCTTATCTGT
  81 AATTTTGTATGCATCTTGGTGGACTTGTCATTGGTATTCTAGGGATGTCTGCTATTAAGTTTCATCTATTGTGTGCTATA
 161 CATGTAAAAACTGTCTCTTTGAACTATTGAAAATTTAAGGTTCAGTATAATATCAATTTTGAATTTTTAATGGTGTTTAT
 241 GAAATTTTAGATAGCAGCGAGTCCTTCGTTTGATCAATAAACAGTGTTACAGATAACTTCAAGTTTATAAAAATACAGTG
 321 AAATTTCTACAAAGCTCTAAATCTGCATTTGCATTTCCTCTGCCCTTTTAACTAAACTAAAACTTGTGAATTTTAAATTA
 401 TTAAGGGGGGGGTGCTGTGTGAATCAGTAGACATTGGATTGGGTTGGTGAAAGAGTTCAGTTCTGTAGTATCTGAATTTG
 481 TCTTTTAAAATGAGTACATATATAGGCAATAAATATATATGCTCAGATCAATATACTTGTTTAGAAAAACTTCAAGACAT
 561 TCAAAAACTAGGAAGGAGTATGTTTAATAGTATTTGTATAAATTTGGTGGTTATGTTTTTTTATTTTGTTTCTGTTTTGT
 641 GTAGAGGTAAAAACTATAGTTTTATTACAGCATAATTCATTTTGAGCTCCACTATGACATTTCAAAGACTGCCCAGTTTG
 721 GAAGTCTGTCATGATTTTTACTCTTTCACTCCAATTCAGTAATTGTTGATAGTATTACTTACCTAGTCCATCCATACTCA
 801 TATTATTCAAATATATAGGTGGTACTTTTGAAACAATTACATTGGTTCTCTTGGTTTAACTGAGGTTTATGAATATTCAA
 881 ACCTTTGCTGGGGGAAAGAAATGAAAGTTAATGAGCATGCTTGCTATGAGAGAGGGATTTTTAATTTAACTTGTAGTTAT
 961 AGTTTACTTATTGTTTTTAGAATTACTTTTACATTTTCCCAACTAGATGGCCTAGAGTCCAACATTACCTTTTGAGATGA
1041 CATTATTGTCTCCATAATTGAGTGATAGCTTTAAAAAAAAGATTAGTTTTGCTTAAGAAGTTATGTTACAACTGATCAGC
1121 CCTATATGAATTAACTGATCAGCCCTATATGAAACATAAGTTGTGTTATAACTTATCAGCCGTATATGGAACATAAATAG
1201 TTTCTACCTGCTTGTTAGAGAAGCTTTAATTTGGTTCTAATAAATACAGTATGGTAGTGTTTATAGGAATCCAGGATGTT
1281 GAAGAAATGGCATAATGTCTATATTTTGGAAACAGAAAGGAAAAGTCACTTAAGATAGTATTAAGTAATTAAATTCCTAT
1361 GTCAGTTGCCAAATCTTTTAAACTTATGTATTCACCAAGCCCAAAAATAGATTGTGGCTCCCAGGATTCCAATTTTAATT
1441 GGAGAGCTAAGTAAGTAAAGTTTTATAACTGTTAGGTTTCTTAATGATCATATTTTGCAGTTTTAGTAAAAGGGAAATAT
1521 TGTTATACATTTATTAAATATACTTCCCCCATGAAGTGAAAAGGTTAATTTTGCTGAATGTTTTAAGTTGAAGTTACTTC
1601 ATGGATGTCATACCCATGAAGTGCATTTGGATGAGATAGAAGAAATTGTTTTTTAAAAAGTTTAAGTACCAAAGGTAGTC
1681 TAGTCTAGAACGATAAGTTAATACGTGTTGGCTTTTCTAATTTGTACTGTAACATCCTTATACTTTCTATTTTAAGTATA
1761 TCTGTTTCTTAAGTAAACAACTTAGATATTTTCCACACCTTTTTTTTTTTTTCTGATGCAGAGTTCAGGTTAATATTTTA
1841 CTGCATCTGATAATGTATTATACGTTTGAAGCCTAGTGACTTTTCATTTTGACATTCTTGTGATTTCATATGCTGTATTC
1921 TTCAAGCAATAAAATTGTGATGTGTTTTATAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' aggACUGGGGAUCU----GGGUUGAc 5'
             | ||:::|| |    ||||||| 
Target 5' gaaTTACTTTTACATTTTCCCAACTa 3'
 980 - 1005 153.00 -11.80
2 
miRNA  3' aggACUGGGGAUCU--GGGUUGAc 5'
             ||:|:|| ||:  :||||:| 
Target 5' ttgTGGCTCCCAGGATTCCAATTt 3'
 1412 - 1435 133.00 -17.40
3 
miRNA  3' agGACUGGGGAUCU-GGGUUGAc 5'
            :| ||:|:|  | :||||:| 
Target 5' ttTTTACTCTTTCACTCCAATTc 3'
 735 - 757 124.00 -11.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30110316 18 COSMIC
COSN30487982 20 COSMIC
COSN31525669 26 COSMIC
COSN1110225 63 COSMIC
COSN1110226 64 COSMIC
COSN30148159 67 COSMIC
COSN31606278 67 COSMIC
COSN30106978 80 COSMIC
COSN30504238 85 COSMIC
COSN30151177 94 COSMIC
COSN1463826 111 COSMIC
COSN31526037 178 COSMIC
COSN31519420 311 COSMIC
COSN31488598 361 COSMIC
COSN20095050 413 COSMIC
COSN26551306 481 COSMIC
COSN31515672 514 COSMIC
COSN10056401 515 COSMIC
COSN9027110 583 COSMIC
COSN31527443 591 COSMIC
COSN31570361 1069 COSMIC
COSN31544815 1090 COSMIC
COSN28805525 1105 COSMIC
COSN31530174 1106 COSMIC
COSN6050653 1196 COSMIC
COSN31607450 1201 COSMIC
COSN30173207 1267 COSMIC
COSN31482825 1364 COSMIC
COSN31527836 1376 COSMIC
COSN8638888 1382 COSMIC
COSN8638889 1496 COSMIC
COSN26465004 1755 COSMIC
COSN20090283 1798 COSMIC
COSN26669819 1799 COSMIC
COSN20095056 1813 COSMIC
COSN31547974 1865 COSMIC
COSN31597510 1865 COSMIC
COSN26544541 2161 COSMIC
COSN17480564 2188 COSMIC
COSN6952895 2197 COSMIC
COSN6952896 2200 COSMIC
COSN25715374 2239 COSMIC
COSN21014921 2284 COSMIC
COSN8521779 2547 COSMIC
COSN6050654 3074 COSMIC
COSN24355327 4144 COSMIC
COSN27193190 4159 COSMIC
COSN28914860 4159 COSMIC
COSN15592809 4217 COSMIC
COSN8521780 5039 COSMIC
COSN6952897 5106 COSMIC
COSN2480328 5117 COSMIC
COSN24996633 5289 COSMIC
COSN6952898 5958 COSMIC
COSN6952899 5960 COSMIC
COSN6952900 6368 COSMIC
COSN16533014 6580 COSMIC
COSN19383135 6715 COSMIC
COSN1463827 6790 COSMIC
COSN25866978 6875 COSMIC
COSN10056402 7346 COSMIC
COSN25522096 8297 COSMIC
COSN21490281 8423 COSMIC
rs4847412 3053 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1306182117 8 dbSNP
rs1227155670 11 dbSNP
rs1322439626 12 dbSNP
rs1364082462 18 dbSNP
rs367910460 19 dbSNP
rs779029076 22 dbSNP
rs1220484587 23 dbSNP
rs1379181158 31 dbSNP
rs186067633 33 dbSNP
rs758545007 34 dbSNP
rs1253977020 37 dbSNP
rs190835113 42 dbSNP
rs1421562985 48 dbSNP
rs183185754 51 dbSNP
rs1193724143 59 dbSNP
rs1271254550 63 dbSNP
rs1439944583 67 dbSNP
rs1050007100 82 dbSNP
rs1214747778 91 dbSNP
rs1257395501 96 dbSNP
rs904385013 101 dbSNP
rs1248234164 104 dbSNP
rs1000494221 105 dbSNP
rs1339286149 105 dbSNP
rs1474541581 120 dbSNP
rs8489 124 dbSNP
rs1418750287 128 dbSNP
rs751569121 132 dbSNP
rs1296688454 136 dbSNP
rs139161339 149 dbSNP
rs1359469761 154 dbSNP
rs754758914 156 dbSNP
rs1009581231 161 dbSNP
rs547743140 165 dbSNP
rs1166382047 171 dbSNP
rs1421322095 172 dbSNP
rs1025017855 199 dbSNP
rs1214135706 200 dbSNP
rs1488113824 207 dbSNP
rs970781833 212 dbSNP
rs1312089579 214 dbSNP
rs1002321041 217 dbSNP
rs1416620329 224 dbSNP
rs1354339812 228 dbSNP
rs1264883713 231 dbSNP
rs867163388 236 dbSNP
rs1034233645 240 dbSNP
rs780895884 249 dbSNP
rs1276746080 250 dbSNP
rs1399763158 253 dbSNP
rs1339510267 259 dbSNP
rs8561 260 dbSNP
rs1406679601 263 dbSNP
rs1224734474 268 dbSNP
rs1387973374 269 dbSNP
rs1162081294 274 dbSNP
rs1271601578 282 dbSNP
rs536283420 292 dbSNP
rs1215502409 301 dbSNP
rs1280142020 304 dbSNP
rs908806015 309 dbSNP
rs961639278 320 dbSNP
rs554425002 322 dbSNP
rs1484973673 334 dbSNP
rs1450036166 338 dbSNP
rs569652672 340 dbSNP
rs1213646938 342 dbSNP
rs1258244864 368 dbSNP
rs1320684851 375 dbSNP
rs536807377 379 dbSNP
rs1218486360 382 dbSNP
rs976385687 387 dbSNP
rs1285526367 399 dbSNP
rs1438205087 402 dbSNP
rs1191246003 404 dbSNP
rs1342509691 405 dbSNP
rs139722860 405 dbSNP
rs1432961184 405 dbSNP
rs386367691 406 dbSNP
rs1412535424 407 dbSNP
rs74104014 407 dbSNP
rs1233539051 408 dbSNP
rs1378575045 408 dbSNP
rs1355357186 409 dbSNP
rs200476160 409 dbSNP
rs1053414526 410 dbSNP
rs553856339 411 dbSNP
rs1002673818 412 dbSNP
rs1421791430 412 dbSNP
rs1180638366 413 dbSNP
rs71311970 413 dbSNP
rs892047275 414 dbSNP
rs1243086950 416 dbSNP
rs1393045300 416 dbSNP
rs1489095909 418 dbSNP
rs866165198 418 dbSNP
rs1174213240 422 dbSNP
rs1321801134 426 dbSNP
rs1383568321 437 dbSNP
rs1291336292 439 dbSNP
rs1226563509 448 dbSNP
rs1378303265 454 dbSNP
rs1278657018 480 dbSNP
rs559138462 483 dbSNP
rs952955442 498 dbSNP
rs1297822861 499 dbSNP
rs1005710987 514 dbSNP
rs1015755117 516 dbSNP
rs1439790797 518 dbSNP
rs1173349454 532 dbSNP
rs1303047932 532 dbSNP
rs1477045061 552 dbSNP
rs1262822355 553 dbSNP
rs1346184601 559 dbSNP
rs961589695 560 dbSNP
rs977002052 563 dbSNP
rs922243875 572 dbSNP
rs1320533810 575 dbSNP
rs953758086 581 dbSNP
rs985575962 599 dbSNP
rs1281702211 611 dbSNP
rs1277234278 614 dbSNP
rs925736217 616 dbSNP
rs1370220153 642 dbSNP
rs1292242579 655 dbSNP
rs1436406347 657 dbSNP
rs1401034825 659 dbSNP
rs1350633879 660 dbSNP
rs1203441262 667 dbSNP
rs1264015417 670 dbSNP
rs1423151477 681 dbSNP
rs1447733970 689 dbSNP
rs935786211 692 dbSNP
rs1250858102 695 dbSNP
rs1455448425 699 dbSNP
rs1238780451 706 dbSNP
rs1199960745 711 dbSNP
rs1194072732 712 dbSNP
rs1363136036 713 dbSNP
rs1233550248 730 dbSNP
rs1314250578 732 dbSNP
rs1299648734 734 dbSNP
rs988622931 740 dbSNP
rs1378275928 744 dbSNP
rs1334006476 747 dbSNP
rs1444613050 762 dbSNP
rs1399680879 766 dbSNP
rs1303589928 772 dbSNP
rs1467782775 783 dbSNP
rs1357712905 789 dbSNP
rs1173681687 791 dbSNP
rs1453626480 794 dbSNP
rs1380808479 795 dbSNP
rs1159791146 798 dbSNP
rs1180466335 799 dbSNP
rs1385054986 801 dbSNP
rs1237045357 832 dbSNP
rs1460538875 835 dbSNP
rs913096647 837 dbSNP
rs777514365 842 dbSNP
rs949918337 846 dbSNP
rs1312043059 848 dbSNP
rs368678468 851 dbSNP
rs748720672 855 dbSNP
rs1045695188 866 dbSNP
rs1302468095 870 dbSNP
rs1313530951 874 dbSNP
rs1397922920 877 dbSNP
rs1335670622 880 dbSNP
rs906493597 895 dbSNP
rs938032982 901 dbSNP
rs1360956423 902 dbSNP
rs190902555 910 dbSNP
rs182662770 913 dbSNP
rs1363222107 922 dbSNP
rs1213261051 928 dbSNP
rs1425087150 932 dbSNP
rs1006073170 936 dbSNP
rs1180952294 945 dbSNP
rs1488791573 952 dbSNP
rs1288614183 953 dbSNP
rs1470032395 956 dbSNP
rs1194017259 957 dbSNP
rs1266597291 960 dbSNP
rs541893111 962 dbSNP
rs1338810142 967 dbSNP
rs1312218858 968 dbSNP
rs35185235 972 dbSNP
rs897343919 972 dbSNP
rs1183918734 993 dbSNP
rs1340825727 994 dbSNP
rs1299800426 1008 dbSNP
rs35565878 1016 dbSNP
rs546616592 1016 dbSNP
rs561556694 1016 dbSNP
rs1029873534 1019 dbSNP
rs1363821755 1022 dbSNP
rs371498397 1023 dbSNP
rs985138271 1024 dbSNP
rs1477943122 1028 dbSNP
rs1396188140 1035 dbSNP
rs1264960098 1054 dbSNP
rs1033133069 1068 dbSNP
rs187544424 1069 dbSNP
rs1268622409 1071 dbSNP
rs1212177166 1073 dbSNP
rs1461691696 1073 dbSNP
rs1264943443 1080 dbSNP
rs144108388 1084 dbSNP
rs1294481579 1094 dbSNP
rs957129213 1095 dbSNP
rs988570634 1104 dbSNP
rs17131741 1105 dbSNP
rs949864673 1106 dbSNP
rs936632383 1110 dbSNP
rs1324067468 1119 dbSNP
rs1388457877 1125 dbSNP
rs1388579586 1127 dbSNP
rs1324623907 1140 dbSNP
rs1351695322 1141 dbSNP
rs1465736770 1142 dbSNP
rs115794714 1157 dbSNP
rs1168137535 1169 dbSNP
rs559827550 1176 dbSNP
rs1337223190 1182 dbSNP
rs868093247 1183 dbSNP
rs1450391410 1184 dbSNP
rs1252985990 1194 dbSNP
rs1199325549 1195 dbSNP
rs888474661 1197 dbSNP
rs941426762 1207 dbSNP
rs1250493056 1208 dbSNP
rs1218271115 1234 dbSNP
rs530036723 1235 dbSNP
rs897291714 1244 dbSNP
rs1251114658 1245 dbSNP
rs998318366 1248 dbSNP
rs1029822619 1249 dbSNP
rs1185137106 1257 dbSNP
rs890043131 1258 dbSNP
rs771457 1261 dbSNP
rs569565538 1262 dbSNP
rs1475299215 1273 dbSNP
rs769291875 1281 dbSNP
rs1328796947 1284 dbSNP
rs1169338876 1290 dbSNP
rs1409016367 1293 dbSNP
rs777079360 1294 dbSNP
rs1174664039 1295 dbSNP
rs1032647724 1297 dbSNP
rs1372830146 1302 dbSNP
rs957278171 1308 dbSNP
rs1460761773 1314 dbSNP
rs192532641 1317 dbSNP
rs1300319603 1320 dbSNP
rs1371700070 1328 dbSNP
rs184844692 1330 dbSNP
rs1311072999 1337 dbSNP
rs1443204747 1338 dbSNP
rs570537881 1345 dbSNP
rs1451376208 1347 dbSNP
rs1200508054 1357 dbSNP
rs1020053301 1359 dbSNP
rs1240805030 1361 dbSNP
rs1378391344 1361 dbSNP
rs150978110 1362 dbSNP
rs1440913311 1365 dbSNP
rs1340677646 1372 dbSNP
rs1335823728 1377 dbSNP
rs1413079981 1384 dbSNP
rs1375241896 1388 dbSNP
rs552790379 1403 dbSNP
rs1159716868 1405 dbSNP
rs981269751 1413 dbSNP
rs1379067477 1468 dbSNP
rs187347274 1475 dbSNP
rs927142789 1483 dbSNP
rs1229053911 1485 dbSNP
rs1295164620 1486 dbSNP
rs958636778 1488 dbSNP
rs1229306245 1498 dbSNP
rs1275153661 1499 dbSNP
rs1347051073 1507 dbSNP
rs1208642609 1513 dbSNP
rs1279349093 1518 dbSNP
rs368572063 1528 dbSNP
rs1258949586 1536 dbSNP
rs1355748767 1537 dbSNP
rs1282124039 1539 dbSNP
rs985126353 1542 dbSNP
rs1356474233 1550 dbSNP
rs1285538411 1552 dbSNP
rs1156258971 1554 dbSNP
rs1185475325 1558 dbSNP
rs1355142860 1559 dbSNP
rs1299180693 1560 dbSNP
rs535400280 1565 dbSNP
rs909861862 1568 dbSNP
rs111977698 1569 dbSNP
rs765344597 1578 dbSNP
rs1475001310 1579 dbSNP
rs918664499 1591 dbSNP
rs1194088312 1598 dbSNP
rs1489170383 1599 dbSNP
rs1240242053 1600 dbSNP
rs1215004920 1613 dbSNP
rs1451619705 1616 dbSNP
rs1291403619 1624 dbSNP
rs934118593 1636 dbSNP
rs11809347 1637 dbSNP
rs1220808582 1638 dbSNP
rs889962130 1638 dbSNP
rs1360344359 1643 dbSNP
rs1288740239 1655 dbSNP
rs1391175197 1660 dbSNP
rs1352186389 1667 dbSNP
rs1007117083 1668 dbSNP
rs1172338380 1674 dbSNP
rs1461032042 1683 dbSNP
rs543777834 1684 dbSNP
rs10621 1689 dbSNP
rs773531948 1692 dbSNP
rs1173132217 1693 dbSNP
rs762925488 1694 dbSNP
rs1360113737 1698 dbSNP
rs1478311597 1702 dbSNP
rs1248439887 1705 dbSNP
rs192203137 1706 dbSNP
rs577347189 1712 dbSNP
rs1467665123 1724 dbSNP
rs1258254453 1734 dbSNP
rs1297971591 1734 dbSNP
rs1346914253 1737 dbSNP
rs1231945878 1748 dbSNP
rs1282347159 1759 dbSNP
rs1312756470 1761 dbSNP
rs1214443881 1762 dbSNP
rs1258506546 1772 dbSNP
rs1370332087 1775 dbSNP
rs148736303 1796 dbSNP
rs1301932094 1797 dbSNP
rs890855112 1798 dbSNP
rs1169466901 1800 dbSNP
rs1354232611 1800 dbSNP
rs1433602333 1800 dbSNP
rs35736597 1800 dbSNP
rs1248980050 1801 dbSNP
rs1055117804 1804 dbSNP
rs1191697955 1805 dbSNP
rs1453210158 1811 dbSNP
rs1238256070 1812 dbSNP
rs397714493 1813 dbSNP
rs78747956 1814 dbSNP
rs1192196589 1816 dbSNP
rs1211222281 1817 dbSNP
rs1427840714 1818 dbSNP
rs1415598663 1819 dbSNP
rs1158467760 1823 dbSNP
rs892766196 1831 dbSNP
rs1343510508 1855 dbSNP
rs1278752638 1856 dbSNP
rs1234216752 1857 dbSNP
rs1377650492 1858 dbSNP
rs1009898280 1861 dbSNP
rs1020000871 1862 dbSNP
rs1372843364 1864 dbSNP
rs1303678620 1865 dbSNP
rs1466319879 1867 dbSNP
rs971117860 1869 dbSNP
rs1370586401 1873 dbSNP
rs1171612667 1877 dbSNP
rs1002652805 1879 dbSNP
rs1380903819 1880 dbSNP
rs1034159243 1881 dbSNP
rs1416831478 1884 dbSNP
rs1305432102 1895 dbSNP
rs958806113 1899 dbSNP
rs1484408021 1901 dbSNP
rs541660473 1909 dbSNP
rs1210696736 1922 dbSNP
rs1355032350 1930 dbSNP
rs1288839004 1938 dbSNP
rs559378256 1950 dbSNP
rs1316438153 1965 dbSNP
rs909131543 1966 dbSNP
rs961971171 1970 dbSNP
rs115884203 1972 dbSNP
rs918613536 1991 dbSNP
rs548148607 1995 dbSNP
rs1010568062 1997 dbSNP
rs1043617523 2000 dbSNP
rs766543083 2001 dbSNP
rs752205669 2009 dbSNP
rs1051632912 2025 dbSNP
rs751641459 2026 dbSNP
rs1450934642 2027 dbSNP
rs1362722654 2034 dbSNP
rs1208920451 2039 dbSNP
rs1029471176 2043 dbSNP
rs563356401 2046 dbSNP
rs955459051 2051 dbSNP
rs1187648718 2052 dbSNP
rs1488843221 2053 dbSNP
rs1004704615 2060 dbSNP
rs911352725 2062 dbSNP
rs942869613 2063 dbSNP
rs1015716169 2072 dbSNP
rs963023451 2079 dbSNP
rs1247158743 2088 dbSNP
rs1332931286 2098 dbSNP
rs754848799 2102 dbSNP
rs767467881 2107 dbSNP
rs974097973 2108 dbSNP
rs1248882509 2117 dbSNP
rs1478602343 2131 dbSNP
rs1177146096 2139 dbSNP
rs1320139644 2140 dbSNP
rs1380461230 2143 dbSNP
rs1384243317 2145 dbSNP
rs1405818601 2148 dbSNP
rs1293587094 2157 dbSNP
rs1473597720 2162 dbSNP
rs1462603856 2168 dbSNP
rs1006580335 2173 dbSNP
rs1478321396 2179 dbSNP
rs1191574026 2181 dbSNP
rs867318778 2181 dbSNP
rs375709959 2184 dbSNP
rs376736406 2185 dbSNP
rs1350268917 2186 dbSNP
rs1441333329 2187 dbSNP
rs1166494036 2188 dbSNP
rs1179411479 2188 dbSNP
rs1196081980 2188 dbSNP
rs1225037784 2188 dbSNP
rs1252454174 2188 dbSNP
rs1301940699 2188 dbSNP
rs1324726487 2188 dbSNP
rs1325758249 2188 dbSNP
rs1378679097 2188 dbSNP
rs1391670725 2188 dbSNP
rs1442413887 2188 dbSNP
rs1452592554 2188 dbSNP
rs1461043641 2188 dbSNP
rs1461582974 2188 dbSNP
rs1461832760 2188 dbSNP
rs1465817559 2188 dbSNP
rs148471850 2188 dbSNP
rs55792701 2188 dbSNP
rs66674738 2188 dbSNP
rs755332474 2188 dbSNP
rs765793010 2188 dbSNP
rs767244184 2188 dbSNP
rs767561307 2188 dbSNP
rs869102630 2188 dbSNP
rs10541348 2189 dbSNP
rs1010516556 2193 dbSNP
rs1277733290 2194 dbSNP
rs1271202639 2195 dbSNP
rs1375494496 2196 dbSNP
rs1228448582 2197 dbSNP
rs1292198132 2198 dbSNP
rs1236416200 2199 dbSNP
rs1332207872 2201 dbSNP
rs1302052291 2202 dbSNP
rs1234750297 2203 dbSNP
rs1337131984 2205 dbSNP
rs1326482323 2206 dbSNP
rs1041390719 2207 dbSNP
rs1292392558 2214 dbSNP
rs1176002533 2215 dbSNP
rs1452570695 2215 dbSNP
rs1389818828 2216 dbSNP
rs1433396765 2216 dbSNP
rs1204319014 2218 dbSNP
rs1231652048 2219 dbSNP
rs1304632221 2220 dbSNP
rs1387104250 2220 dbSNP
rs12095277 2226 dbSNP
rs1231353110 2227 dbSNP
rs1484358360 2228 dbSNP
rs568863102 2234 dbSNP
rs1417256842 2237 dbSNP
rs1474316616 2239 dbSNP
rs1345617832 2240 dbSNP
rs1279572297 2244 dbSNP
rs1352247874 2254 dbSNP
rs763772398 2254 dbSNP
rs1414203614 2258 dbSNP
rs906881676 2259 dbSNP
rs1441030237 2263 dbSNP
rs1409120673 2268 dbSNP
rs1023203770 2278 dbSNP
rs1315162204 2280 dbSNP
rs1372315547 2281 dbSNP
rs1413371610 2291 dbSNP
rs1375336837 2292 dbSNP
rs753738111 2293 dbSNP
rs12095319 2302 dbSNP
rs1402469776 2304 dbSNP
rs1405893869 2307 dbSNP
rs7525248 2328 dbSNP
rs928803205 2334 dbSNP
rs958533178 2345 dbSNP
rs1006460648 2357 dbSNP
rs1016140318 2367 dbSNP
rs939075822 2368 dbSNP
rs1216430151 2369 dbSNP
rs184816986 2373 dbSNP
rs1308685808 2381 dbSNP
rs1281517952 2383 dbSNP
rs988293804 2390 dbSNP
rs1335050984 2392 dbSNP
rs1294785785 2399 dbSNP
rs913686448 2401 dbSNP
rs150163836 2403 dbSNP
rs558073913 2412 dbSNP
rs899738360 2418 dbSNP
rs932586258 2420 dbSNP
rs768952880 2425 dbSNP
rs139287427 2426 dbSNP
rs749028365 2427 dbSNP
rs1344853280 2428 dbSNP
rs1344011350 2436 dbSNP
rs1317703730 2438 dbSNP
rs1206519250 2462 dbSNP
rs1025574063 2477 dbSNP
rs1396912123 2488 dbSNP
rs367886497 2490 dbSNP
rs1163082408 2491 dbSNP
rs1256837445 2494 dbSNP
rs534508201 2505 dbSNP
rs1004082212 2506 dbSNP
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rs577759802 5840 dbSNP
rs1296748736 5842 dbSNP
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rs1023678697 8688 dbSNP
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rs1003480991 8701 dbSNP
rs1242782596 8710 dbSNP
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rs1375219004 8726 dbSNP
rs776320178 8727 dbSNP
rs1298097229 8739 dbSNP
rs565594926 8750 dbSNP
rs918725253 8753 dbSNP
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rs1431788784 8758 dbSNP
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rs1434271669 8762 dbSNP
rs1034701839 8767 dbSNP
rs1375908090 8769 dbSNP
rs1470115697 8778 dbSNP
rs1158239297 8786 dbSNP
rs960462005 8787 dbSNP
rs911475787 8792 dbSNP
rs1473098672 8798 dbSNP
rs1238662065 8804 dbSNP
rs374637210 8814 dbSNP
rs1455297213 8817 dbSNP
rs1288893476 8820 dbSNP
rs547950779 8824 dbSNP
rs1020582655 8832 dbSNP
rs968150503 8835 dbSNP
rs1485106844 8837 dbSNP
rs1366329491 8848 dbSNP
rs1402612467 8853 dbSNP
rs1218421560 8854 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 1810.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' aggACUGGGGAUCU----GGGUUGAc 5'
             | ||:::|| |    ||||||| 
Target 5' -aaUUACUUUUACAUUUUCCCAACUa 3'
 		1 - 25
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
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CLIP-seq Support 1 for dataset GSM714645