miRTarBase - #MIRT294153


—
pre-miRNA Information
pre-miRNA hsa-mir-548ac   
Genomic Coordinates chr1: 116560024 - 116560111
Description Homo sapiens miR-548ac stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548ac
Sequence 53| CAAAAACCGGCAAUUACUUUUG |74
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 1 - 116560056 29233923 MiREDiBase
A-to-I 5 1 - 116560055 29233923 MiREDiBase
A-to-I 6 1 - 116560054 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1182074110 6 dbSNP
rs1392446444 6 dbSNP
rs1326234665 7 dbSNP
rs556579863 8 dbSNP
rs993390910 9 dbSNP
rs901450363 13 dbSNP
rs538553306 22 dbSNP
Putative Targets

Gene Information
Gene Symbol ZNF845   
Synonyms -
Description zinc finger protein 845
Transcript NM_138374   
Expression
Putative miRNA Targets on ZNF845
3'UTR of ZNF845
(miRNA target sites are highlighted)		 
>ZNF845|NM_138374|3'UTR
   1 AAATATGAAGAATGTGACAAAGTTTACAGTTGTAAATCAAGTCTTGAAAGACAGGAGAATTCATACTGGAGAGAAAGCTT
  81 ACAAATGTAAGAGTTTGTGACAAGAATCTTGGGCGTGATTCACACCTGGCCCAACAAACTAGAAGTCACACTGGAGAGAA
 161 ACCTTACAAGTGTACTGAGTGTGGCAAAGCCTTTAGTGGGCAGTCAACACTTATTCACCATCAGGCAATCCATGGTATAG
 241 GGAAACTTTACTAATGTAATGATTATCACAAAGTCTTCAGTAACACTACAACCGTTTCAAATCATTGGAGAATCCATAAT
 321 GAGAGATTTTGAAAGTGTAATAAATGTGGCAAATTTTTCAGACATTGTTCATACCTTGCAGTTCATCGGTGAACTCATGC
 401 TGGAGAGAAACCTTACAAATGTCATGATTGTGGCAAGGTCTTCAGTCTAGCTTCATCTTATGCAAAACAGGAGACTTCAT
 481 ACAGGAGACAAACTTCACAAGTATGATGATTGCAGCAAAGCCTTTACTTCACGTTCACACCTAATTAGACATCAGAGAAT
 561 CCATACTGGACAGAAATCTTACAAATGTCATCAGTGTGGCAAGGTCTTCAGTCTGAGATCACCCCTTAAGGAACATCAGA
 641 AAATTCATTTTTGAGATGATTGTTCCAAATGCAATGAGTATAGCAAACCATCAAGCATTAATTGGCATTAGAGTCAATTC
 721 AGCATTGACTTGAGTTTGAATTGACTTAACATTGAGTTCAAGCATTAATTGACATTAAAGTGTTTATGTTAAGAAGATTG
 801 GGCCAGGCGGGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGACCAATAGATCACTTGAGGTCAGGAGTTT
 881 GAGACCAGACTGGCCAACAGACATGAGTCACTTTTCCCACCCTGTATTTTGTTTCTTTAATAAAAACTGTTACGGGTTTT
 961 TATGGGTATCTGTTGAATCTAAATCACATTTGTTTGTATAATCATTCAACAATATTAAGACTTCCAATCCATCAATATGG
1041 GTTGTATGTCTATTTAGTTTTTTTGATCAATGTAGATTTCAAGGTACAAGCTTCTCACCTCCTTAATTCAGTTTATTTGT
1121 AAGTATTAAGTTTCATAGCAAATTGAAGTGTGTTCATAAGTTTCTTTAAACATTATTTATTGTTAATGTAAGGAAATTCA
1201 ACTAATTTTGGGTGCTGATTTTGTATTCTGCAAATACATTGAGTGGGTTTATTAGTATCAGTAAAATCTTGGTTGATTCT
1281 TTGTGATTTTCTTTCTTTTTTTTTTGAGACAGTCTCACTCTGTTACCCAGGCTCTTTTCTTTTTTTTTGAGAAGGAGTCT
1361 CACTCTTGTCACTTGGACTGGAGTACAATGGCACGATCTTGGCTCACTGCAGCCTCTGCCTTTCGGGTTTAAGTGATTCT
1441 CCTGCCTACTAACTGAGATTACAGGTGCCTGCCACCATGTCCGTATAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTC
1521 ACCATGTTGACCAGGTTTTTCTTGAACTCCTGACTTCAGGTGATCCGCCCCCATCAGCATCCCAAAGTTCTGGGATTACA
1601 GGTGTGAGCCACCGCACCCAGCCAGTGATTTTCTATATAGAATGTCGTATCATCTACAAGGAAATAATTTTTTTTTTTGA
1681 GACAATGTCTCTCTCTGTCGCCAGGCTAGAGTGCCGTGGAATGATCTTTGCTCACTGCAACCTCTGTCTCCCACGTCCAA
1761 GCAATTCTGTCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCATGTCACCACACCTAGCTAATTTATTTATTTTTTTTA
1841 TTTTAGTAAAGACGGGGTTTCACCATGTTGGCCCAGATGGTGGGCCAACATGGTGAGTACCTTGAAGAGAACTTGAAAGA
1921 ATATGTTAGATCGCCTAACCTCATTATCCGCCCACTTCGGACTTGCAAATTGCTGGGATTATGGGTGTGAGCCATGAGCC
2001 CGGCCCCAACAAATGTAATTTTACTTCTGTCTTTCTGATTTGGATGAGTTTTATTTCTTTTGCTATTTAATTGCTCTGCC
2081 TAGGACAGCCAGTATTTATTGAATATCAGGGGTGAGAGCATTCTTGCATCATGTGATATCCTACAGGAAAACCATTCCAT
2161 TTTCCTTCATTGGTTATTTCAGCTGTGGTCATTTCATGGATGATTTTTATATTTTTGAGGTAAAACTCTACCTATATTGT
2241 TTAGGATTTTTACGAAGAATGAATATTGAGTTCTGTGAAATGCTTTTTCTCTATCTATTGAGATAATGTGTTTTTTATCT
2321 GTCATTCTGTGCAAGTGTGTATCCCATTGATTTGAGTATGTTGAACCATCCTTGCATCCCATGAATAGGTAGCACTTGGA
2401 TGTTTACAATCCCTTTTTATATCCTCTTGAATACAGTTTGCTAGTATAAGGGTCTTCAAGAAGTTCATGGAAAAATACAT
2481 ATTATGAAAAATTTGTGCATAAATTTCACACTTTTTGTACCAAAATAAACC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' guUUUCAUUAACGGCCAAAAAc 5'
            ||| | :|| | ||||||| 
Target 5' aaAAACT-GTTACGGGTTTTTa 3'
 942 - 962 159.00 -6.80
2 
miRNA  3' guuuucauUAAC-GG-CCAAAAAc 5'
                  :||| || ||||||| 
Target 5' ttcaccatGTTGACCAGGTTTTTc 3'
 1518 - 1541 150.00 -8.70
3 
miRNA  3' guuUUCAU-UAA--CGGCCAAAAAc 5'
             || || |||  |: ||||| | 
Target 5' tgcAAATACATTGAGTGGGTTTATt 3'
 1229 - 1253 125.00 -5.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31610755 7 COSMIC
COSN24315274 8 COSMIC
COSN30103445 11 COSMIC
COSN31578151 58 COSMIC
COSN19730818 68 COSMIC
COSN30130776 85 COSMIC
COSN30484348 140 COSMIC
COSN25178791 151 COSMIC
COSN30533777 151 COSMIC
COSN25566722 158 COSMIC
COSN8262007 167 COSMIC
COSN2533371 170 COSMIC
COSN30187814 173 COSMIC
COSN30189614 184 COSMIC
COSN30515488 185 COSMIC
COSN30462991 220 COSMIC
COSN27006621 235 COSMIC
COSN27006623 236 COSMIC
COSN30533293 241 COSMIC
COSN31517820 243 COSMIC
COSN31552817 246 COSMIC
COSN30178667 262 COSMIC
COSN30450150 268 COSMIC
COSN17132158 295 COSMIC
COSN30166113 299 COSMIC
COSN30539564 315 COSMIC
COSN31554537 350 COSMIC
COSN30170090 353 COSMIC
COSN30181364 361 COSMIC
COSN31497146 362 COSMIC
COSN31558895 388 COSMIC
COSN30139834 434 COSMIC
COSN1218337 464 COSMIC
COSN30193977 488 COSMIC
COSN30502279 521 COSMIC
COSN31570082 522 COSMIC
COSN13826843 533 COSMIC
COSN13826844 534 COSMIC
COSN20121849 544 COSMIC
COSN30152057 554 COSMIC
COSN30493357 570 COSMIC
COSN15877070 580 COSMIC
COSN31579887 613 COSMIC
COSN30467598 666 COSMIC
COSN30462857 667 COSMIC
COSN30121865 740 COSMIC
COSN30167272 756 COSMIC
COSN28521111 799 COSMIC
COSN31588514 804 COSMIC
COSN15300376 1536 COSMIC
COSN20738837 1612 COSMIC
COSN6147055 1701 COSMIC
COSN22227190 1771 COSMIC
COSN29335247 1951 COSMIC
COSN21077378 2196 COSMIC
COSN25248927 2223 COSMIC
COSN8975701 2233 COSMIC
COSN22763614 2461 COSMIC
COSN22834004 2465 COSMIC
COSN29546323 2535 COSMIC
COSN5439323 2651 COSMIC
COSN5439324 2676 COSMIC
COSN5184934 2986 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1213162318 1 dbSNP
rs1287249377 3 dbSNP
rs1430516119 4 dbSNP
rs182891493 5 dbSNP
rs974789592 7 dbSNP
rs1416780473 11 dbSNP
rs370651682 12 dbSNP
rs777608109 15 dbSNP
rs913202223 16 dbSNP
rs1394268705 19 dbSNP
rs1278168328 27 dbSNP
rs746825853 28 dbSNP
rs1342737163 30 dbSNP
rs1227061289 33 dbSNP
rs770865753 35 dbSNP
rs971906184 36 dbSNP
rs1349608207 37 dbSNP
rs1331361338 41 dbSNP
rs1439594820 49 dbSNP
rs1210386178 51 dbSNP
rs1392195087 51 dbSNP
rs1167062400 53 dbSNP
rs1461746990 56 dbSNP
rs981546665 57 dbSNP
rs1406909386 58 dbSNP
rs571036371 62 dbSNP
rs1048576338 67 dbSNP
rs908712559 69 dbSNP
rs937191836 73 dbSNP
rs1467231067 74 dbSNP
rs1256278388 79 dbSNP
rs1214814373 88 dbSNP
rs1038208472 114 dbSNP
rs919840360 115 dbSNP
rs1225845461 116 dbSNP
rs187236586 117 dbSNP
rs929878207 120 dbSNP
rs1309616194 126 dbSNP
rs1232886282 129 dbSNP
rs1368206164 138 dbSNP
rs1327355550 140 dbSNP
rs1437053388 140 dbSNP
rs1440203341 141 dbSNP
rs1057202657 150 dbSNP
rs1315950354 151 dbSNP
rs556860832 152 dbSNP
rs1402302713 157 dbSNP
rs753622378 159 dbSNP
rs1173302366 173 dbSNP
rs1012938819 186 dbSNP
rs1452834169 188 dbSNP
rs113229413 196 dbSNP
rs1194344964 197 dbSNP
rs1044379584 201 dbSNP
rs1240925140 202 dbSNP
rs1218376674 212 dbSNP
rs1233119297 215 dbSNP
rs890775951 219 dbSNP
rs1447975338 226 dbSNP
rs1286254083 246 dbSNP
rs568647869 247 dbSNP
rs1209642063 250 dbSNP
rs774907574 252 dbSNP
rs1304902675 256 dbSNP
rs1219367630 257 dbSNP
rs904448117 259 dbSNP
rs1007833135 260 dbSNP
rs535875238 275 dbSNP
rs1268389591 281 dbSNP
rs1432614789 285 dbSNP
rs1039460141 286 dbSNP
rs553728548 292 dbSNP
rs1312084994 293 dbSNP
rs1435326081 294 dbSNP
rs140015571 295 dbSNP
rs1176862076 301 dbSNP
rs764000412 307 dbSNP
rs778673729 316 dbSNP
rs1033144864 320 dbSNP
rs1417954213 327 dbSNP
rs1484970080 332 dbSNP
rs545907778 338 dbSNP
rs115328202 339 dbSNP
rs1373478939 339 dbSNP
rs955883615 344 dbSNP
rs373737706 347 dbSNP
rs191683588 353 dbSNP
rs920251592 362 dbSNP
rs1336622117 364 dbSNP
rs1270303226 368 dbSNP
rs1010463792 375 dbSNP
rs1341060314 376 dbSNP
rs1292386747 381 dbSNP
rs1196392433 388 dbSNP
rs149857287 389 dbSNP
rs754992836 392 dbSNP
rs1235399909 398 dbSNP
rs1352784236 402 dbSNP
rs1172658883 405 dbSNP
rs145692283 406 dbSNP
rs1466537123 407 dbSNP
rs1417786658 411 dbSNP
rs1280262066 414 dbSNP
rs940216054 425 dbSNP
rs1343424318 432 dbSNP
rs981433574 435 dbSNP
rs927400709 437 dbSNP
rs1197064419 440 dbSNP
rs1273056807 451 dbSNP
rs958741318 457 dbSNP
rs755958183 458 dbSNP
rs1206026591 461 dbSNP
rs183894313 462 dbSNP
rs1272541636 480 dbSNP
rs1231190291 499 dbSNP
rs919742608 501 dbSNP
rs948780992 503 dbSNP
rs1313186236 508 dbSNP
rs929902528 509 dbSNP
rs1047000031 512 dbSNP
rs1371457263 523 dbSNP
rs912458862 533 dbSNP
rs943743881 534 dbSNP
rs570057073 542 dbSNP
rs1394354905 549 dbSNP
rs1163466396 558 dbSNP
rs559409516 560 dbSNP
rs1463499743 562 dbSNP
rs1369375357 577 dbSNP
rs78076459 583 dbSNP
rs1375889014 585 dbSNP
rs10413231 598 dbSNP
rs1457852881 599 dbSNP
rs1169777833 600 dbSNP
rs1397286749 604 dbSNP
rs1465364551 618 dbSNP
rs1053012730 622 dbSNP
rs34321725 628 dbSNP
rs1469788944 632 dbSNP
rs748952471 636 dbSNP
rs891680247 638 dbSNP
rs1329572061 647 dbSNP
rs1396895234 648 dbSNP
rs1008732683 650 dbSNP
rs1324010893 654 dbSNP
rs1442133267 669 dbSNP
rs1288643312 674 dbSNP
rs1452171663 679 dbSNP
rs1303076208 682 dbSNP
rs368711279 689 dbSNP
rs551506073 693 dbSNP
rs189121411 694 dbSNP
rs1160134693 697 dbSNP
rs1439944201 698 dbSNP
rs1230228134 705 dbSNP
rs1270324885 710 dbSNP
rs1019157823 714 dbSNP
rs1434773998 715 dbSNP
rs879468964 717 dbSNP
rs1196136622 718 dbSNP
rs1055051453 720 dbSNP
rs1274677151 722 dbSNP
rs1193293338 741 dbSNP
rs893327528 742 dbSNP
rs1468604009 746 dbSNP
rs900282055 753 dbSNP
rs144243733 762 dbSNP
rs1347440457 770 dbSNP
rs373345604 778 dbSNP
rs1332175609 787 dbSNP
rs1448726091 788 dbSNP
rs1380861979 791 dbSNP
rs1193808635 792 dbSNP
rs1387535501 797 dbSNP
rs1299226027 803 dbSNP
rs879632593 805 dbSNP
rs1419855441 806 dbSNP
rs971636900 809 dbSNP
rs1015865078 810 dbSNP
rs1002877564 811 dbSNP
rs754745321 821 dbSNP
rs193296112 822 dbSNP
rs1426698475 829 dbSNP
rs1264983861 831 dbSNP
rs555610696 836 dbSNP
rs1194135717 838 dbSNP
rs917398383 843 dbSNP
rs1293358046 845 dbSNP
rs573710515 854 dbSNP
rs980166465 855 dbSNP
rs925975082 856 dbSNP
rs372769005 857 dbSNP
rs1225825192 858 dbSNP
rs535766711 861 dbSNP
rs936001881 862 dbSNP
rs1414610917 863 dbSNP
rs1310735434 870 dbSNP
rs376113016 871 dbSNP
rs761594497 872 dbSNP
rs1402247250 873 dbSNP
rs1053086405 874 dbSNP
rs1425762245 878 dbSNP
rs1171119952 888 dbSNP
rs185550557 890 dbSNP
rs891718111 896 dbSNP
rs1174768830 899 dbSNP
rs944611483 903 dbSNP
rs951278220 903 dbSNP
rs756378658 905 dbSNP
rs912482122 909 dbSNP
rs1194161603 942 dbSNP
rs1040244087 949 dbSNP
rs1259340117 950 dbSNP
rs1216279863 952 dbSNP
rs548503769 954 dbSNP
rs1286358853 955 dbSNP
rs1246453378 960 dbSNP
rs975059915 963 dbSNP
rs920905157 969 dbSNP
rs936321461 976 dbSNP
rs190453721 986 dbSNP
rs1327587566 989 dbSNP
rs1389247054 998 dbSNP
rs1335132179 1000 dbSNP
rs1402333264 1001 dbSNP
rs1232289169 1009 dbSNP
rs1460875950 1028 dbSNP
rs557872091 1036 dbSNP
rs1164786177 1037 dbSNP
rs1027372086 1041 dbSNP
rs1363494660 1042 dbSNP
rs1263529752 1045 dbSNP
rs1179741199 1052 dbSNP
rs1459173494 1058 dbSNP
rs887503597 1061 dbSNP
rs1213573306 1066 dbSNP
rs1467533915 1068 dbSNP
rs1427747355 1069 dbSNP
rs1229312718 1075 dbSNP
rs1356607962 1081 dbSNP
rs1053569224 1085 dbSNP
rs576443824 1092 dbSNP
rs1237299405 1099 dbSNP
rs1378409949 1102 dbSNP
rs1014970941 1105 dbSNP
rs1439990913 1120 dbSNP
rs1205447437 1126 dbSNP
rs1325260480 1128 dbSNP
rs1405803374 1141 dbSNP
rs1384485145 1149 dbSNP
rs946276187 1150 dbSNP
rs1042239345 1155 dbSNP
rs1380928916 1161 dbSNP
rs767834399 1172 dbSNP
rs961685591 1173 dbSNP
rs1249034902 1180 dbSNP
rs907462628 1182 dbSNP
rs1003099779 1189 dbSNP
rs1024502489 1197 dbSNP
rs1034370761 1201 dbSNP
rs1475689467 1202 dbSNP
rs181571832 1221 dbSNP
rs1366871843 1222 dbSNP
rs1286035167 1223 dbSNP
rs555296606 1225 dbSNP
rs771352051 1234 dbSNP
rs1365395916 1235 dbSNP
rs926047194 1236 dbSNP
rs1276583979 1238 dbSNP
rs7256235 1240 dbSNP
rs1296121891 1244 dbSNP
rs1360484739 1262 dbSNP
rs541344588 1272 dbSNP
rs1173090234 1283 dbSNP
rs982642396 1286 dbSNP
rs1192235123 1296 dbSNP
rs1427841849 1296 dbSNP
rs988860894 1296 dbSNP
rs117451038 1298 dbSNP
rs965282786 1306 dbSNP
rs1196312463 1307 dbSNP
rs1040681326 1311 dbSNP
rs1314235090 1317 dbSNP
rs1286371021 1328 dbSNP
rs921842617 1333 dbSNP
rs931834904 1334 dbSNP
rs1355533865 1337 dbSNP
rs185721930 1338 dbSNP
rs578031036 1340 dbSNP
rs545009228 1341 dbSNP
rs1401684968 1343 dbSNP
rs1341331823 1350 dbSNP
rs1312555875 1353 dbSNP
rs1446122960 1356 dbSNP
rs1360928511 1357 dbSNP
rs921166882 1360 dbSNP
rs1318293510 1364 dbSNP
rs1176882375 1366 dbSNP
rs563428972 1369 dbSNP
rs1239537533 1370 dbSNP
rs1004581018 1371 dbSNP
rs188620216 1376 dbSNP
rs867040520 1392 dbSNP
rs896123151 1395 dbSNP
rs989548183 1396 dbSNP
rs1482088325 1397 dbSNP
rs1238646802 1422 dbSNP
rs146591045 1425 dbSNP
rs1282648490 1426 dbSNP
rs760378740 1427 dbSNP
rs1024992111 1428 dbSNP
rs376904919 1429 dbSNP
rs1318276032 1440 dbSNP
rs970276502 1443 dbSNP
rs568576719 1449 dbSNP
rs763692015 1451 dbSNP
rs140337951 1473 dbSNP
rs181101214 1483 dbSNP
rs530364590 1484 dbSNP
rs1398697990 1489 dbSNP
rs894725051 1499 dbSNP
rs957479489 1500 dbSNP
rs373119603 1505 dbSNP
rs1027365059 1513 dbSNP
rs1466621025 1513 dbSNP
rs989281960 1514 dbSNP
rs1418478830 1517 dbSNP
rs887211236 1534 dbSNP
rs1004679920 1536 dbSNP
rs1019637505 1543 dbSNP
rs1181904721 1543 dbSNP
rs1456971976 1544 dbSNP
rs566024898 1544 dbSNP
rs965211872 1546 dbSNP
rs771453750 1551 dbSNP
rs966452849 1564 dbSNP
rs976085260 1565 dbSNP
rs539483323 1567 dbSNP
rs777228980 1568 dbSNP
rs186219946 1569 dbSNP
rs1391593974 1570 dbSNP
rs1308342028 1572 dbSNP
rs1223272677 1575 dbSNP
rs537657555 1580 dbSNP
rs958155365 1584 dbSNP
rs1236139603 1588 dbSNP
rs10420481 1590 dbSNP
rs537168033 1591 dbSNP
rs966505879 1594 dbSNP
rs1459806257 1599 dbSNP
rs1351236758 1604 dbSNP
rs1164981870 1605 dbSNP
rs1438732917 1607 dbSNP
rs981882047 1613 dbSNP
rs555794039 1614 dbSNP
rs573886527 1615 dbSNP
rs938867963 1617 dbSNP
rs11668369 1618 dbSNP
rs1189210803 1624 dbSNP
rs1196597730 1630 dbSNP
rs10420503 1632 dbSNP
rs931526813 1636 dbSNP
rs1215279341 1638 dbSNP
rs1044699265 1647 dbSNP
rs577985958 1648 dbSNP
rs1433078038 1653 dbSNP
rs1173408951 1657 dbSNP
rs1033201383 1668 dbSNP
rs1299879727 1668 dbSNP
rs561134089 1668 dbSNP
rs368983967 1673 dbSNP
rs1368703646 1680 dbSNP
rs1288663932 1685 dbSNP
rs1004203340 1686 dbSNP
rs1462239948 1688 dbSNP
rs957511267 1691 dbSNP
rs1419817940 1692 dbSNP
rs1376972586 1696 dbSNP
rs1010374112 1698 dbSNP
rs758387849 1700 dbSNP
rs1041144955 1701 dbSNP
rs1303825166 1704 dbSNP
rs1487429583 1711 dbSNP
rs1366872449 1712 dbSNP
rs901262674 1716 dbSNP
rs1344338078 1717 dbSNP
rs1254373472 1726 dbSNP
rs1235987776 1732 dbSNP
rs1313313703 1740 dbSNP
rs1295292309 1741 dbSNP
rs1217393318 1752 dbSNP
rs996637419 1753 dbSNP
rs10419050 1754 dbSNP
rs143570130 1755 dbSNP
rs575142651 1756 dbSNP
rs1378201888 1757 dbSNP
rs1020853666 1758 dbSNP
rs1456577710 1761 dbSNP
rs1476747201 1767 dbSNP
rs542367992 1770 dbSNP
rs909080194 1773 dbSNP
rs981767414 1778 dbSNP
rs768911990 1783 dbSNP
rs1254105804 1787 dbSNP
rs1483860971 1788 dbSNP
rs1258022417 1789 dbSNP
rs560990199 1798 dbSNP
rs1320387133 1800 dbSNP
rs927740099 1802 dbSNP
rs529490861 1803 dbSNP
rs917663893 1805 dbSNP
rs534588833 1816 dbSNP
rs949132153 1817 dbSNP
rs1044790798 1819 dbSNP
rs904838603 1821 dbSNP
rs1422191905 1829 dbSNP
rs1054723667 1832 dbSNP
rs1248806253 1832 dbSNP
rs547569876 1832 dbSNP
rs1367010182 1836 dbSNP
rs916039307 1836 dbSNP
rs190741715 1840 dbSNP
rs931479037 1841 dbSNP
rs1049149004 1844 dbSNP
rs533467688 1848 dbSNP
rs908785289 1849 dbSNP
rs1237663654 1854 dbSNP
rs12609466 1854 dbSNP
rs761980874 1855 dbSNP
rs574386956 1857 dbSNP
rs901273965 1859 dbSNP
rs749535019 1860 dbSNP
rs997607506 1866 dbSNP
rs1028974672 1867 dbSNP
rs1049568344 1868 dbSNP
rs1246563981 1870 dbSNP
rs893655518 1875 dbSNP
rs953367163 1876 dbSNP
rs985269875 1877 dbSNP
rs148055218 1878 dbSNP
rs1021325910 1880 dbSNP
rs961951599 1893 dbSNP
rs1326388671 1896 dbSNP
rs34363036 1916 dbSNP
rs1404589024 1918 dbSNP
rs972317526 1919 dbSNP
rs1165164561 1920 dbSNP
rs1458629465 1922 dbSNP
rs767444818 1933 dbSNP
rs537407390 1934 dbSNP
rs1442071094 1936 dbSNP
rs1239388820 1939 dbSNP
rs1433947770 1940 dbSNP
rs1450188178 1942 dbSNP
rs1292508818 1944 dbSNP
rs757492686 1950 dbSNP
rs1034653515 1951 dbSNP
rs1237414203 1955 dbSNP
rs936339932 1959 dbSNP
rs571370418 1960 dbSNP
rs1325280492 1964 dbSNP
rs1316343179 1967 dbSNP
rs893387177 1968 dbSNP
rs1156925442 1969 dbSNP
rs990588704 1978 dbSNP
rs1172464328 1986 dbSNP
rs1477329342 1987 dbSNP
rs946311851 1990 dbSNP
rs1200099531 1992 dbSNP
rs1235358446 1995 dbSNP
rs1355161389 1998 dbSNP
rs1284377940 1999 dbSNP
rs1027379130 2001 dbSNP
rs368599097 2002 dbSNP
rs901991579 2003 dbSNP
rs1276380850 2004 dbSNP
rs997586631 2005 dbSNP
rs1340083685 2010 dbSNP
rs1029048113 2043 dbSNP
rs984267812 2049 dbSNP
rs1402117053 2059 dbSNP
rs889177740 2068 dbSNP
rs772757492 2076 dbSNP
rs1413257311 2093 dbSNP
rs940269999 2095 dbSNP
rs750385823 2098 dbSNP
rs1173498024 2105 dbSNP
rs976750383 2110 dbSNP
rs1477729305 2120 dbSNP
rs1421957365 2128 dbSNP
rs1191001727 2131 dbSNP
rs1489068043 2133 dbSNP
rs922586899 2140 dbSNP
rs1242128673 2144 dbSNP
rs140868984 2145 dbSNP
rs760621994 2152 dbSNP
rs1440623100 2154 dbSNP
rs1260378879 2155 dbSNP
rs1224074184 2159 dbSNP
rs182587165 2160 dbSNP
rs1165200665 2174 dbSNP
rs893855541 2176 dbSNP
rs946543228 2179 dbSNP
rs1220635221 2191 dbSNP
rs1042218770 2196 dbSNP
rs1025254971 2199 dbSNP
rs970598447 2200 dbSNP
rs902459752 2201 dbSNP
rs980575195 2204 dbSNP
rs1337905986 2205 dbSNP
rs1465586240 2212 dbSNP
rs1003445528 2218 dbSNP
rs1034914263 2219 dbSNP
rs1429911843 2221 dbSNP
rs957740430 2227 dbSNP
rs1160966189 2240 dbSNP
rs1180740391 2243 dbSNP
rs894828168 2254 dbSNP
rs913565523 2255 dbSNP
rs1011885791 2261 dbSNP
rs1027821028 2264 dbSNP
rs951827043 2275 dbSNP
rs1255905129 2278 dbSNP
rs1200380828 2280 dbSNP
rs984729443 2281 dbSNP
rs1338519764 2284 dbSNP
rs1015749237 2285 dbSNP
rs1308271573 2286 dbSNP
rs1312343808 2290 dbSNP
rs767082999 2290 dbSNP
rs946314558 2292 dbSNP
rs1416629500 2294 dbSNP
rs961628929 2298 dbSNP
rs1446620204 2307 dbSNP
rs1375400227 2331 dbSNP
rs576587643 2333 dbSNP
rs922827523 2334 dbSNP
rs1354730804 2335 dbSNP
rs1163585261 2338 dbSNP
rs12609817 2342 dbSNP
rs889209032 2344 dbSNP
rs985436645 2348 dbSNP
rs1439003924 2350 dbSNP
rs1006256605 2353 dbSNP
rs1286746102 2360 dbSNP
rs915348988 2378 dbSNP
rs1323742823 2382 dbSNP
rs1292568444 2392 dbSNP
rs1355106749 2404 dbSNP
rs946811366 2410 dbSNP
rs1352105605 2413 dbSNP
rs1312160478 2414 dbSNP
rs1042639979 2429 dbSNP
rs902368448 2433 dbSNP
rs1392500551 2436 dbSNP
rs1038128758 2441 dbSNP
rs1284418244 2472 dbSNP
rs897810340 2478 dbSNP
rs1406819703 2480 dbSNP
rs1163636687 2482 dbSNP
rs1486374159 2488 dbSNP
rs879250043 2490 dbSNP
rs1024909341 2492 dbSNP
rs1377977103 2512 dbSNP
rs1236566080 2517 dbSNP
rs939140206 2518 dbSNP
rs1056404799 2520 dbSNP
rs1419602720 2523 dbSNP
rs1266332714 2532 dbSNP
rs561701639 2547 dbSNP
rs1490899825 2548 dbSNP
rs1215955681 2549 dbSNP
rs895026111 2551 dbSNP
rs1012366472 2552 dbSNP
rs1002044432 2554 dbSNP
rs1048715651 2562 dbSNP
rs1419096690 2580 dbSNP
rs1156785542 2584 dbSNP
rs887552140 2587 dbSNP
rs187186800 2610 dbSNP
rs1399050970 2615 dbSNP
rs1357992644 2625 dbSNP
rs1334874687 2633 dbSNP
rs1290126385 2637 dbSNP
rs1454234193 2642 dbSNP
rs550611247 2653 dbSNP
rs746479271 2660 dbSNP
rs1446061489 2663 dbSNP
rs569920452 2664 dbSNP
rs1193166389 2666 dbSNP
rs966416739 2673 dbSNP
rs1263928286 2676 dbSNP
rs1205862905 2677 dbSNP
rs1029870326 2679 dbSNP
rs954289992 2684 dbSNP
rs1254814093 2686 dbSNP
rs976802369 2687 dbSNP
rs1324671649 2702 dbSNP
rs923551165 2703 dbSNP
rs933541484 2704 dbSNP
rs147720936 2705 dbSNP
rs985896681 2705 dbSNP
rs1297089331 2707 dbSNP
rs1382335569 2708 dbSNP
rs915229365 2709 dbSNP
rs968431866 2712 dbSNP
rs1300958470 2716 dbSNP
rs754798815 2718 dbSNP
rs538571122 2720 dbSNP
rs1037801574 2721 dbSNP
rs1307738936 2723 dbSNP
rs555672225 2732 dbSNP
rs1476962607 2733 dbSNP
rs993513808 2736 dbSNP
rs923989813 2738 dbSNP
rs1200572266 2740 dbSNP
rs1423271917 2752 dbSNP
rs939171162 2763 dbSNP
rs1440390756 2764 dbSNP
rs1206172749 2768 dbSNP
rs1238341576 2769 dbSNP
rs1462163608 2770 dbSNP
rs1257804682 2772 dbSNP
rs1197214345 2776 dbSNP
rs1337005669 2781 dbSNP
rs1252751298 2784 dbSNP
rs1339329107 2793 dbSNP
rs1438871806 2793 dbSNP
rs1056309161 2799 dbSNP
rs780667472 2799 dbSNP
rs557178566 2802 dbSNP
rs575134163 2810 dbSNP
rs1463916058 2811 dbSNP
rs567594735 2812 dbSNP
rs916536123 2820 dbSNP
rs947983662 2823 dbSNP
rs893631786 2829 dbSNP
rs1049228184 2839 dbSNP
rs887469369 2842 dbSNP
rs1424535340 2845 dbSNP
rs1185555674 2850 dbSNP
rs1004925102 2865 dbSNP
rs1036077889 2866 dbSNP
rs901560379 2878 dbSNP
rs542605083 2890 dbSNP
rs1413048623 2891 dbSNP
rs1331144557 2893 dbSNP
rs966824205 2895 dbSNP
rs1251727931 2897 dbSNP
rs1195952641 2898 dbSNP
rs1446545873 2899 dbSNP
rs1355223573 2908 dbSNP
rs1329687655 2911 dbSNP
rs1288955510 2923 dbSNP
rs1029775323 2924 dbSNP
rs1247587177 2928 dbSNP
rs150168930 2931 dbSNP
rs1234581694 2932 dbSNP
rs1273797617 2938 dbSNP
rs1342272327 2943 dbSNP
rs1007163102 2946 dbSNP
rs1329315437 2948 dbSNP
rs955000542 2952 dbSNP
rs1258333362 2956 dbSNP
rs764927360 2974 dbSNP
rs1022942664 2981 dbSNP
rs1425433292 2982 dbSNP
rs1157339822 2983 dbSNP
rs190636820 2983 dbSNP
rs773039369 2985 dbSNP
rs978460241 2989 dbSNP
rs1198683354 2993 dbSNP
rs1450655397 2997 dbSNP
rs1266394974 2998 dbSNP
rs1452167335 3014 dbSNP
rs1198074363 3019 dbSNP
rs1490359863 3021 dbSNP
rs973939774 3023 dbSNP
rs919356369 3025 dbSNP
rs924063367 3031 dbSNP
rs960774849 3032 dbSNP
rs929372924 3034 dbSNP
rs553082754 3035 dbSNP
rs572582413 3036 dbSNP
rs1343847556 3047 dbSNP
rs1046431682 3050 dbSNP
rs1405813400 3058 dbSNP
rs1359906048 3061 dbSNP
rs992022543 3064 dbSNP
rs906514803 3065 dbSNP
rs1409405270 3067 dbSNP
rs190901856 3068 dbSNP
rs577928255 3069 dbSNP
rs183112546 3070 dbSNP
rs1169057124 3072 dbSNP
rs909087800 3073 dbSNP
rs1448627024 3074 dbSNP
rs940371048 3075 dbSNP
rs1021174115 3076 dbSNP
rs1387634346 3077 dbSNP
rs551791669 3080 dbSNP
rs564008160 3081 dbSNP
rs1432327630 3083 dbSNP
rs933055925 3085 dbSNP
rs1316975472 3087 dbSNP
rs377283582 3088 dbSNP
rs1334036469 3089 dbSNP
rs530852539 3092 dbSNP
rs1274889779 3094 dbSNP
rs777092990 3095 dbSNP
rs1356794039 3096 dbSNP
rs1422531521 3099 dbSNP
rs1184239524 3100 dbSNP
rs1208968538 3101 dbSNP
rs985066627 3102 dbSNP
rs1459936655 3103 dbSNP
rs1448628435 3104 dbSNP
rs187447242 3108 dbSNP
rs190394050 3109 dbSNP
rs1271087201 3111 dbSNP
rs182969383 3113 dbSNP
rs746393973 3114 dbSNP
rs547079146 3115 dbSNP
rs1191779588 3116 dbSNP
rs561195437 3117 dbSNP
rs571475307 3118 dbSNP
rs1162999636 3120 dbSNP
rs538777549 3124 dbSNP
rs188061709 3125 dbSNP
rs893736698 3132 dbSNP
rs946620132 3134 dbSNP
rs1042265656 3136 dbSNP
rs569123582 3137 dbSNP
rs535897881 3138 dbSNP
rs540266761 3139 dbSNP
rs1243914199 3141 dbSNP
rs1294770076 3143 dbSNP
rs1316292563 3144 dbSNP
rs530469197 3145 dbSNP
rs192340966 3146 dbSNP
rs984990870 3147 dbSNP
rs909169413 3149 dbSNP
rs532087374 3150 dbSNP
rs572472711 3151 dbSNP
rs950961898 3151 dbSNP
rs1352817459 3152 dbSNP
rs940594383 3153 dbSNP
rs928038098 3154 dbSNP
rs62115345 3155 dbSNP
rs990855245 3156 dbSNP
rs7248434 3157 dbSNP
rs922920410 3158 dbSNP
rs62115346 3159 dbSNP
rs1402721813 3162 dbSNP
rs1424587071 3165 dbSNP
rs867446566 3166 dbSNP
rs923855011 3168 dbSNP
rs7248544 3169 dbSNP
rs188829918 3170 dbSNP
rs1419406887 3171 dbSNP
rs889565914 3172 dbSNP
rs867550708 3174 dbSNP
rs1269681883 3175 dbSNP
rs1006591551 3178 dbSNP
rs1204698133 3178 dbSNP
rs1044277290 3180 dbSNP
rs1038023585 3181 dbSNP
rs1217172362 3182 dbSNP
rs898141912 3184 dbSNP
rs1347076304 3185 dbSNP
rs904135748 3185 dbSNP
rs1360385094 3186 dbSNP
rs1417352276 3187 dbSNP
rs1359286216 3190 dbSNP
rs1027000862 3191 dbSNP
rs950958151 3192 dbSNP
rs1405013036 3196 dbSNP
rs531211056 3198 dbSNP
rs1471076655 3200 dbSNP
rs1035180287 3202 dbSNP
rs1031235715 3203 dbSNP
rs138047017 3204 dbSNP
rs541402927 3206 dbSNP
rs915276723 3209 dbSNP
rs968458079 3210 dbSNP
rs7248548 3211 dbSNP
rs867002283 3213 dbSNP
rs547117947 3214 dbSNP
rs969874724 3215 dbSNP
rs1226282921 3220 dbSNP
rs1324108581 3222 dbSNP
rs1257815214 3224 dbSNP
rs1382031383 3227 dbSNP
rs1334414512 3230 dbSNP
rs933897743 3232 dbSNP
rs1483735198 3233 dbSNP
rs984672634 3234 dbSNP
rs113965695 3235 dbSNP
rs961956933 3236 dbSNP
rs1459381344 3241 dbSNP
rs911052622 3244 dbSNP
rs368081661 3249 dbSNP
rs1185983833 3252 dbSNP
rs1462018751 3255 dbSNP
rs1250269250 3256 dbSNP
rs532246924 3256 dbSNP
rs1038092529 3258 dbSNP
rs148774302 3259 dbSNP
rs371578493 3260 dbSNP
rs929649284 3261 dbSNP
rs1228553272 3266 dbSNP
rs1312770091 3267 dbSNP
rs1377690193 3267 dbSNP
rs766579707 3267 dbSNP
rs1383180138 3268 dbSNP
rs954382966 3269 dbSNP
rs886718275 3270 dbSNP
rs1003777744 3271 dbSNP
rs1424039965 3273 dbSNP
rs1300726862 3274 dbSNP
rs1401959604 3275 dbSNP
rs1447290486 3282 dbSNP
rs1363573857 3283 dbSNP
rs1180194166 3285 dbSNP
rs142436435 3291 dbSNP
rs1252291748 3292 dbSNP
rs150905929 3297 dbSNP
rs1490032400 3298 dbSNP
rs1288975224 3299 dbSNP
rs1220864032 3300 dbSNP
rs1357047108 3300 dbSNP
rs1303583119 3301 dbSNP
rs1312852675 3302 dbSNP
rs1236672924 3305 dbSNP
rs781132263 3309 dbSNP
rs1232551240 3311 dbSNP
rs1337331782 3312 dbSNP
rs1254509470 3319 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048187. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_control ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' guuuUCAUUAACGG--CCAAAaac 5'
              ||||:  | |  |||||   
Target 5' uuuuAGUAG-AGACGGGGUUUcac 3'
 		2 - 24
Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
CLIP-seq Support 1 for dataset GSM1048187
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_control
Location of target site ENST00000458035.1 | 3UTR | UUUUUAGUAGAGACGGGGUUUCACCAUGUUGACCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
275 hsa-miR-548ac Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055863 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT074959 LEPROT leptin receptor overlapping transcript 2 2
MIRT076823 SUZ12 SUZ12 polycomb repressive complex 2 subunit 2 4
MIRT078708 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT099610 ID4 inhibitor of DNA binding 4, HLH protein 2 4
MIRT103362 CBX3 chromobox 3 2 2
MIRT111801 MPZL1 myelin protein zero like 1 2 2
MIRT114050 AKAP11 A-kinase anchoring protein 11 2 12
MIRT133719 SKI SKI proto-oncogene 2 2
MIRT136817 NHLRC3 NHL repeat containing 3 2 6
MIRT149926 LDLR low density lipoprotein receptor 2 2
MIRT166915 TNPO1 transportin 1 2 2
MIRT168142 SOX4 SRY-box 4 2 10
MIRT190787 STRN3 striatin 3 2 4
MIRT207471 RMND5A required for meiotic nuclear division 5 homolog A 2 2
MIRT250951 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT271993 ARF1 ADP ribosylation factor 1 2 4
MIRT282618 IGF1R insulin like growth factor 1 receptor 2 8
MIRT294153 ZNF845 zinc finger protein 845 2 2
MIRT309060 C4ORF3 chromosome 4 open reading frame 3 2 2
MIRT318548 SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein 2 2
MIRT319752 LUC7L2 LUC7 like 2, pre-mRNA splicing factor 2 2
MIRT331324 TM9SF3 transmembrane 9 superfamily member 3 2 2
MIRT337204 TOMM20 translocase of outer mitochondrial membrane 20 2 6
MIRT346145 ALYREF Aly/REF export factor 2 2
MIRT347727 LSM14A LSM14A, mRNA processing body assembly factor 2 2
MIRT350503 MRGBP MRG domain binding protein 2 6
MIRT356409 RBPJ recombination signal binding protein for immunoglobulin kappa J region 2 2
MIRT357986 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT374399 M6PR mannose-6-phosphate receptor, cation dependent 2 6
MIRT442727 TMEM158 transmembrane protein 158 (gene/pseudogene) 2 2
MIRT443411 HMX3 H6 family homeobox 3 2 2
MIRT444408 FRMD5 FERM domain containing 5 2 2
MIRT444469 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT444650 HSBP1 heat shock factor binding protein 1 2 2
MIRT444861 EXD2 exonuclease 3'-5' domain containing 2 2 2
MIRT445685 TNFSF15 TNF superfamily member 15 2 2
MIRT446001 CD1D CD1d molecule 2 2
MIRT446074 RABIF RAB interacting factor 2 2
MIRT446308 ACSL3 acyl-CoA synthetase long chain family member 3 2 2
MIRT446432 ABHD2 abhydrolase domain containing 2 2 2
MIRT447269 C3orf30 chromosome 3 open reading frame 30 2 2
MIRT447759 TMCC3 transmembrane and coiled-coil domain family 3 2 2
MIRT448161 P2RY10 purinergic receptor P2Y10 2 2
MIRT449049 ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif 5 2 2
MIRT449275 PALM2 paralemmin 2 2 2
MIRT450122 IMP3 IMP3, U3 small nucleolar ribonucleoprotein 2 2
MIRT450155 GABRB3 gamma-aminobutyric acid type A receptor beta3 subunit 2 2
MIRT451289 ZNF101 zinc finger protein 101 2 2
MIRT459253 ADRBK1 G protein-coupled receptor kinase 2 2 2
MIRT462554 NUDT19 nudix hydrolase 19 2 2
MIRT464470 UGCG UDP-glucose ceramide glucosyltransferase 2 2
MIRT465120 TSC22D2 TSC22 domain family member 2 2 4
MIRT467996 SKIL SKI like proto-oncogene 2 2
MIRT468718 SDC4 syndecan 4 2 2
MIRT469269 RHOB ras homolog family member B 2 2
MIRT470675 POLR2D RNA polymerase II subunit D 2 4
MIRT470723 POGK pogo transposable element derived with KRAB domain 2 2
MIRT471438 PDIA6 protein disulfide isomerase family A member 6 2 2
MIRT471502 PDE4D phosphodiesterase 4D 2 4
MIRT471988 NR2F2 nuclear receptor subfamily 2 group F member 2 2 4
MIRT472386 NEK7 NIMA related kinase 7 2 2
MIRT475028 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT479411 CDKN1B cyclin dependent kinase inhibitor 1B 2 10
MIRT480514 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT481700 AR androgen receptor 2 2
MIRT482543 ACTB actin beta 2 4
MIRT482627 ABCE1 ATP binding cassette subfamily E member 1 2 2
MIRT484725 INHBA inhibin beta A subunit 2 12
MIRT487778 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT491883 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT494653 ARNTL aryl hydrocarbon receptor nuclear translocator like 2 2
MIRT497366 SF1 splicing factor 1 2 2
MIRT499156 HSPA1B heat shock protein family A (Hsp70) member 1B 2 8
MIRT502830 CELSR3 cadherin EGF LAG seven-pass G-type receptor 3 2 6
MIRT502944 CDC37L1 cell division cycle 37 like 1 2 8
MIRT503942 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT504235 MYO6 myosin VI 2 2
MIRT504453 MC2R melanocortin 2 receptor 2 2
MIRT506022 PURA purine rich element binding protein A 2 2
MIRT508028 BCAT1 branched chain amino acid transaminase 1 2 4
MIRT508299 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 4
MIRT511515 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT512307 AMER1 APC membrane recruitment protein 1 2 6
MIRT514565 XRCC3 X-ray repair cross complementing 3 2 4
MIRT515657 MYBPC1 myosin binding protein C, slow type 2 2
MIRT518429 SSU72 SSU72 homolog, RNA polymerase II CTD phosphatase 2 2
MIRT520378 UBE2D1 ubiquitin conjugating enzyme E2 D1 2 4
MIRT521604 PSMA2 proteasome subunit alpha 2 2 4
MIRT521725 PPP3R1 protein phosphatase 3 regulatory subunit B, alpha 2 4
MIRT522579 MBNL3 muscleblind like splicing regulator 3 2 4
MIRT522731 LRRC55 leucine rich repeat containing 55 2 8
MIRT524547 CDC5L cell division cycle 5 like 2 4
MIRT525371 SYNM synemin 2 2
MIRT526489 PPIA peptidylprolyl isomerase A 2 4
MIRT527197 CLASP1 cytoplasmic linker associated protein 1 2 2
MIRT527285 FBLN2 fibulin 2 2 2
MIRT527383 MGARP mitochondria localized glutamic acid rich protein 2 2
MIRT527409 SMU1 DNA replication regulator and spliceosomal factor 2 6
MIRT527454 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT528348 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529104 ZNF100 zinc finger protein 100 2 2
MIRT529317 ATRNL1 attractin like 1 2 2
MIRT529328 PDE5A phosphodiesterase 5A 2 2
MIRT529750 SEL1L SEL1L ERAD E3 ligase adaptor subunit 2 2
MIRT530277 MKRN3 makorin ring finger protein 3 2 2
MIRT531415 TMEM18 transmembrane protein 18 2 2
MIRT532544 WDR13 WD repeat domain 13 2 2
MIRT533245 VKORC1L1 vitamin K epoxide reductase complex subunit 1 like 1 2 2
MIRT534659 RNF20 ring finger protein 20 2 2
MIRT534818 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT537492 FAM169A family with sequence similarity 169 member A 2 2
MIRT538778 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT539122 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT540964 SLC25A43 solute carrier family 25 member 43 2 2
MIRT541403 CDC27 cell division cycle 27 2 2
MIRT543353 ZNF829 zinc finger protein 829 2 2
MIRT543623 MFAP3 microfibril associated protein 3 2 2
MIRT543649 YY2 YY2 transcription factor 2 2
MIRT544945 SNCB synuclein beta 2 2
MIRT545327 SPC25 SPC25, NDC80 kinetochore complex component 2 2
MIRT546094 VEZF1 vascular endothelial zinc finger 1 2 2
MIRT548605 DCUN1D3 defective in cullin neddylation 1 domain containing 3 2 2
MIRT548638 DAZAP1 DAZ associated protein 1 2 4
MIRT550318 ZNF681 zinc finger protein 681 2 2
MIRT550412 SLC29A1 solute carrier family 29 member 1 (Augustine blood group) 2 4
MIRT551034 SPPL3 signal peptide peptidase like 3 2 2
MIRT551602 HDGFRP2 HDGF like 2 2 2
MIRT552064 ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 2 4
MIRT552803 YAF2 YY1 associated factor 2 2 2
MIRT553274 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT553303 TSPAN3 tetraspanin 3 2 2
MIRT553570 NPM3 nucleophosmin/nucleoplasmin 3 2 2
MIRT554844 RECK reversion inducing cysteine rich protein with kazal motifs 2 2
MIRT556069 MTF2 metal response element binding transcription factor 2 2 4
MIRT556898 ITGA2 integrin subunit alpha 2 2 2
MIRT558680 CNIH cornichon family AMPA receptor auxiliary protein 1 1 1
MIRT559032 C20orf24 chromosome 20 open reading frame 24 2 2
MIRT559108 C18orf25 chromosome 18 open reading frame 25 2 2
MIRT559864 GSKIP GSK3B interacting protein 2 2
MIRT560868 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT562268 GRB2 growth factor receptor bound protein 2 2 2
MIRT562419 EIF2S2 eukaryotic translation initiation factor 2 subunit beta 2 2
MIRT562652 ARID1A AT-rich interaction domain 1A 2 4
MIRT563771 ZNF678 zinc finger protein 678 2 2
MIRT564279 DEPDC1B DEP domain containing 1B 2 2
MIRT565253 TRA2B transformer 2 beta homolog 2 4
MIRT565307 TMEM64 transmembrane protein 64 2 2
MIRT566034 RFX1 regulatory factor X1 2 2
MIRT566714 MTMR3 myotubularin related protein 3 2 2
MIRT568087 CELF2 CUGBP Elav-like family member 2 2 2
MIRT568417 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT568766 MYBL1 MYB proto-oncogene like 1 2 2
MIRT569516 THYN1 thymocyte nuclear protein 1 2 2
MIRT571823 PHF19 PHD finger protein 19 2 2
MIRT571995 HOXA9 homeobox A9 2 2
MIRT572174 CELF1 CUGBP Elav-like family member 1 2 2
MIRT572637 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT573756 KHSRP KH-type splicing regulatory protein 2 2
MIRT574089 CCDC132 VPS50, EARP/GARPII complex subunit 2 6
MIRT574311 CMTM6 CKLF like MARVEL transmembrane domain containing 6 2 2
MIRT574512 PSAT1 phosphoserine aminotransferase 1 2 2
MIRT574559 NRBF2 nuclear receptor binding factor 2 2 2
MIRT576686 H6pd hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) 2 2
MIRT608491 NKTR natural killer cell triggering receptor 2 6
MIRT608640 ATP9A ATPase phospholipid transporting 9A (putative) 2 6
MIRT609231 TMEM189 transmembrane protein 189 2 2
MIRT609561 TCEAL4 transcription elongation factor A like 4 2 2
MIRT610193 FAM49A family with sequence similarity 49 member A 2 2
MIRT610681 SYT2 synaptotagmin 2 2 4
MIRT610725 NAV2 neuron navigator 2 2 2
MIRT610813 SGOL2 shugoshin 2 2 2
MIRT610993 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 2
MIRT611030 KCNK10 potassium two pore domain channel subfamily K member 10 2 2
MIRT611339 SLC2A4 solute carrier family 2 member 4 2 2
MIRT611511 HIPK3 homeodomain interacting protein kinase 3 2 2
MIRT611638 EDIL3 EGF like repeats and discoidin domains 3 2 2
MIRT611856 RPL3L ribosomal protein L3 like 2 2
MIRT611905 TRPC3 transient receptor potential cation channel subfamily C member 3 2 2
MIRT612047 PCNXL2 pecanex homolog 2 2 6
MIRT612340 TRIB2 tribbles pseudokinase 2 2 2
MIRT612870 INO80C INO80 complex subunit C 2 2
MIRT613555 AMPD3 adenosine monophosphate deaminase 3 2 2
MIRT614490 MMS22L MMS22 like, DNA repair protein 2 2
MIRT615098 BRD4 bromodomain containing 4 2 2
MIRT616228 PTPN11 protein tyrosine phosphatase, non-receptor type 11 2 2
MIRT617220 GDPGP1 GDP-D-glucose phosphorylase 1 2 2
MIRT617884 ESR1 estrogen receptor 1 2 2
MIRT618344 CD59 CD59 molecule (CD59 blood group) 2 2
MIRT620264 RAPH1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 2 2
MIRT620660 CCDC108 cilia and flagella associated protein 65 2 2
MIRT620761 CCR5 C-C motif chemokine receptor 5 (gene/pseudogene) 2 2
MIRT621416 TXNL1 thioredoxin like 1 2 2
MIRT621676 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 2
MIRT622231 SLC25A51 solute carrier family 25 member 51 2 2
MIRT622377 SALL1 spalt like transcription factor 1 2 2
MIRT622404 RRAGC Ras related GTP binding C 2 2
MIRT622494 RC3H1 ring finger and CCCH-type domains 1 2 2
MIRT623064 NRXN1 neurexin 1 2 2
MIRT623295 MAX MYC associated factor X 2 2
MIRT623691 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT623930 FMNL3 formin like 3 2 2
MIRT623984 FAM208A family with sequence similarity 208 member A 2 2
MIRT624513 C7orf55-LUC7L2 C7orf55-LUC7L2 readthrough 2 2
MIRT624668 ARID4A AT-rich interaction domain 4A 2 2
MIRT624756 ANGPTL2 angiopoietin like 2 2 2
MIRT624949 MARCH2 membrane associated ring-CH-type finger 2 2 2
MIRT625968 RNF2 ring finger protein 2 2 2
MIRT626415 KIAA2018 upstream transcription factor family member 3 2 2
MIRT626882 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627157 ZNF652 zinc finger protein 652 2 2
MIRT627613 SFT2D2 SFT2 domain containing 2 2 2
MIRT627744 RAP2B RAP2B, member of RAS oncogene family 2 4
MIRT627808 PTEN phosphatase and tensin homolog 2 2
MIRT627820 PRR3 proline rich 3 2 2
MIRT630935 UNC93A unc-93 homolog A 2 2
MIRT635930 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638301 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT638437 PNRC1 proline rich nuclear receptor coactivator 1 2 2
MIRT640281 TCF24 transcription factor 24 2 2
MIRT641979 PCMTD2 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 2 2
MIRT644179 GIN1 gypsy retrotransposon integrase 1 2 2
MIRT644439 VDR vitamin D receptor 2 2
MIRT644974 STEAP4 STEAP4 metalloreductase 2 2
MIRT647653 B3GALNT1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 2 2
MIRT648702 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT650120 ZCCHC9 zinc finger CCHC-type containing 9 2 2
MIRT650505 UFM1 ubiquitin fold modifier 1 2 2
MIRT650701 CLNK cytokine dependent hematopoietic cell linker 2 2
MIRT651083 ZNF518B zinc finger protein 518B 2 4
MIRT653644 SLC30A1 solute carrier family 30 member 1 2 2
MIRT653788 SIX4 SIX homeobox 4 2 2
MIRT656773 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT656949 KIAA1456 KIAA1456 2 2
MIRT656981 KDM5A lysine demethylase 5A 2 2
MIRT657225 TOR1AIP2 torsin 1A interacting protein 2 2 4
MIRT657706 GPC5 glypican 5 2 2
MIRT660107 BTBD3 BTB domain containing 3 2 2
MIRT662817 C9orf64 chromosome 9 open reading frame 64 2 2
MIRT665889 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT668140 GINS2 GINS complex subunit 2 2 2
MIRT668566 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT669718 AAGAB alpha and gamma adaptin binding protein 2 2
MIRT685693 TRIM45 tripartite motif containing 45 2 2
MIRT686579 TMPPE transmembrane protein with metallophosphoesterase domain 2 2
MIRT687491 NHLRC2 NHL repeat containing 2 2 2
MIRT687805 KCNJ15 potassium voltage-gated channel subfamily J member 15 2 2
MIRT687968 HHIP hedgehog interacting protein 2 2
MIRT689487 SCIMP SLP adaptor and CSK interacting membrane protein 2 2
MIRT689595 NUDT7 nudix hydrolase 7 2 2
MIRT690501 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT692290 XRN2 5'-3' exoribonuclease 2 2 2
MIRT693060 KIAA1324 KIAA1324 2 2
MIRT697443 ZFHX3 zinc finger homeobox 3 2 2
MIRT698475 TJP1 tight junction protein 1 2 2
MIRT699033 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699785 SEMA4D semaphorin 4D 2 2
MIRT701463 NEO1 neogenin 1 2 2
MIRT701869 MRO maestro 2 2
MIRT702158 MAP3K1 mitogen-activated protein kinase kinase kinase 1 2 2
MIRT703750 FAM126B family with sequence similarity 126 member B 2 2
MIRT704277 DGS2 DiGeorge syndrome/velocardiofacial syndrome complex 2 2 2
MIRT707956 PGM3 phosphoglucomutase 3 2 2
MIRT712747 LAMTOR1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 2 2
MIRT712848 RHOA ras homolog family member A 2 2
MIRT712954 CCBE1 collagen and calcium binding EGF domains 1 2 2
MIRT713119 U2SURP U2 snRNP associated SURP domain containing 2 2
MIRT713148 PKIA cAMP-dependent protein kinase inhibitor alpha 2 2
MIRT715394 TADA3 transcriptional adaptor 3 2 2
MIRT715475 NEGR1 neuronal growth regulator 1 2 2
MIRT715535 G2E3 G2/M-phase specific E3 ubiquitin protein ligase 2 2
MIRT721159 MYOCD myocardin 2 2
MIRT722719 ZNF460 zinc finger protein 460 2 2
MIRT723130 GTF2F2 general transcription factor IIF subunit 2 2 2
MIRT723259 TMLHE trimethyllysine hydroxylase, epsilon 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-54 Nicotine approved 89594 Microarray Caenorhabditis elegans 23765240 2013 up-regualted
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548ac Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-548ac Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-548ac Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-548ac Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-548ac Paclitaxel 36314 NSC125973 approved sensitive cell line (HS578T)
hsa-miR-548ac Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-548ac Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-548ac Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-548ac Tamoxifen+Fulvestrant resistant cell line (LCC9)
hsa-miR-548ac Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)

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