miRTarBase - #MIRT295740


—
pre-miRNA Information
pre-miRNA hsa-mir-4471   
Genomic Coordinates chr8: 100382763 - 100382845
Description Homo sapiens miR-4471 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4471
Sequence 49| UGGGAACUUAGUAGAGGUUUAA |70
Evidence Experimental
Experiments Illumina
Putative Targets

Gene Information
Gene Symbol KIF3B   
Synonyms FLA8, HH0048, KLP-11
Description kinesin family member 3B
Transcript NM_004798   
Expression
Putative miRNA Targets on KIF3B
3'UTR of KIF3B
(miRNA target sites are highlighted)		 
>KIF3B|NM_004798|3'UTR
   1 AGCCAGCTTCTCCTCTCCCAGGGCGGAAACAGCATTTGCCTTCTGAGAGAAGAGACTAGCAAAAAGCTGCAGAGAGGATT
  81 CGGCCCAAACTCAGAACTGTTCCCCTGAGGAGAAGCGGTGGCCTCTTTGCAGATCAACCAACTTAATCTGGTTGAACGTG
 161 CTGTTCCTAATCTGGCACTCAGCCCCTCTGGGAAACATCTTTTAATTAGCATCTCAGAAATGCATGGGTAAGGTAAAGTG
 241 CGATAGTTCAAGTGGAAAGCAAGAGAATGACCAGTGACCTTGCTTCCTTCCCCCTTGCCTTCTTCTCCCCCTTCCCCTGT
 321 GCTCCCTTTCTCTCCTCTCTCCTTTTCTAGCCTGTTCTTTACATGGGGCTCCCTTCTTGTTGAACAATAGGGCAGAATCA
 401 GGAGTCACCTTAGCAGGACCACATCTTTGGAGCCTCGGGATAAAATGACAGTGAGGTTGAAAAGTGAAAACCCTAGAACT
 481 TGAATAGGTGCCTGTTCTTGTAGGGAGAAATGAGAAATCGCATTTGGATCCAGGCCCCAGGTGGGCACCATCAGCAGTCT
 561 TGCTTCCATGCACCTCAGTAAGAAGTGGATCTGCCTTTGGGACCTGCTCAGTGAGGAAATCTCTTCCAATTTCTGCTTCT
 641 GAATGATTCAATGTTGGGAGCAATAGAAATAACATTCCCTTTGCCTTCTCTGAGTGTTTAGGGAAATAGCTTCTTTAAAA
 721 CCTCAAAACCATGACCATCCTGTCAAAGACCTAAGTCTGTAAGCTGGTGCCATGTCCATACACCATGTCACTTTACTCTT
 801 CATTTGTCACCATCTTTTCCCATGCACGCATACTCTGAACATCCTTGTGTGGGCCCATCCTCTGCATCCAGAGCATGCTC
 881 TGCAGTGGGCCTGTTTTGTGGAAGAAAGGAGGCTGTCTCTGCCTTCTCTGATGGGACTGGAGTTGAGGGAAGGAGCTGTA
 961 TTGTGGCACTTCTGAATTCCCCGTTTTGTTCCATATTGGTATAGAGAGCAGAAGAGTAGCTAGGCAGATGCAGAGATGGA
1041 GACATGAGACTCAGTGCAGTGGGCAGGGAAGACATAACAGATGGAAGCAAAGGAATCCTGCCTGCCTTCAGCAGAGAATT
1121 CACCGAATCCTAGAACTGTGGCTCCCTCCAGGCAGAGCCTAAGATGCTGGTGAAGAATAGCTGTGTGATTGAATAGGCTC
1201 AAAGGAGAGTTCAGAATTCCCATTTACATATTACTAGTTTGGTTTGTAAGTTTTAGTTCCTTGTATTATTGAGATTCAGA
1281 GCTTCATTTTATGTTGGTCATTAGGTGAATATTACTCATTTTCCCTCAAGAGAAGCTCATAAGTGTGTGTGGGTGTGAGA
1361 GCACGATGGTGCCTGTGTTCTGTGAATGTGTCCATATGTGTCTGTAAGAGAGACAGAGACCAAGAACTTGCCCAATTTTA
1441 GAAATACACTAATGTGCAGTTGTTGCCTTTTGTCTGTATTGAAGGCCCATTGAATGACTAATCCAGGCTGGAAGCATTCC
1521 CATGTGGGTGTCTGAGTCCATGAGCCAAGCCTGAGGGGACAGTGAGTCTCCAGGTCTGCCACACTGGTGCACCTTGCTGG
1601 CACGGTGCCTCAGGAAGGTGGCGACTCAGGTGGGCCTTGAGTTATATTTTAACTCAGCTGCTCAGTTCCCAGGGCACATT
1681 TCTGGATCAGAACCCATGGGAAACAGGAGGTACTAAGTGCAATGTCTTAGCATTCTGCAAAATGGAGATCTGTTGTCCAG
1761 CGGCTTATCTCCTTTTTAGTAACCCTTCTTTCTGAACCCAGGGCCCTTTTCAGCCTTCCCTCATATTTTCTTGAGATCAA
1841 ACTTTACTTCTTTCTTATTTACTAAGAATTTGCCTGTTTGAATAAGAACAAAACGCTAAGGTGGGTAGCCTAAGCTGATT
1921 TTCTGCTGGTTACACGTGTCTCTCACACCACATTTCCTCAAAGCTAATCTGAATTCTGTAGGCTAAAAATATTCATGTAG
2001 CAAATCTGAGAATTGAAAACTGCAGATAACCGGCCGGGTATGGTGACTCATGCCTGTAATCCTAGCACTTTGGGAGGCCG
2081 AGGTGGGTGGACCACCTGAGGTTAGGACTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCATCTGTACTAAAAATACA
2161 AAAATTTGCCTGGTGTGGTGGTGCATGCCTCTAGTCCTAGCTACTCGGGAGGCTGAGGCACGAGAATCACTTGAACCTGG
2241 GAGGCGGAGGTTGCAGTGAGTCGAGATAACACTACTGCATTCCAGCCTGGGTGACAGAGTGAGACTCCCCCTCAAAAAAA
2321 AAAAAAAAAAAAAAAAAAACAGAAAGAAAGAAAAAGAAAACTGCAGATAACCCTATACATTAATACTGGTATCTCGAGGT
2401 GACTCTTCTGACCAAGGGTGGTTAAGTGACACATAGAACTTTTCTAAGAGAAGACAGACAAGTTGACAGGCATGCCTTGT
2481 ACTCAGCTGTGTTCATGTGGTGGTCTGTGGAAAGAAAAGAAGACTCATTTGGAAATGAAGCTGTCCCTTTCCAAGCAGTC
2561 TCTGGTGCTTTTCTTCTCTCAAAATGGATCCGATAAATATTTGAATAGAGCAGATTGTAGAATGTCGTGCTGTCACCAGA
2641 AAGCTGCTGTTTTGGGTTCTGCATTGAGCCAAATATGTAGAGGACCTACCAAGCCCACTGAGGGACTAGGTTTTCATGTC
2721 TCTAGTCATACCTAGAATGTTCTGAGCCGTCTGAGGGCCTTCATGCCGGCAGCAGCTAGCAAAGCCAGAAAGCAAGTCTA
2801 ACAGGATCTAAGATGACCATCAGGAGAAGGAGTTTGAGACTGTGTATGCAACCCCCAATAGACCCCCTTTTACTCTGATC
2881 TGGAGAATGTATCTGGCTTCATATTTTCAAGTCACATGTCTCTCAGACCCCTGGATTCAGAACCCAAGGCCACAAATCAT
2961 AGGCATGAAGCACTTTCTTAAGACTGACCTAACGCTGGATTATTTCCCGTCCAATGCCTGCATGCTGCTTGAATTGCTCC
3041 ACCCACACCTCCATGACCAAGGGCGCCAGAGTGCTGCAACTGGGGCGTGGGCCGCTCTCTGCTTTTCCTGTCTGACTCTG
3121 ACAAGTCCTCCCTCACTGAATGTAGAATCGTTGCCAAGTTTCTGAGAAGTGTCGATTCCCTGTTAACATGGATATCAGTT
3201 CTGCCTCACATTTCCCACTTGAGGTTGAGGCGTACTGGAGACAACACCTCAGACCATCTGAACCCCATCAGTGGACGAAA
3281 ATGGGGCTGTTAATATACTCTAAAAGCCATACTAAAAATGCTCTGAGGGAACTGGCTAAGAATAGTGGGCCTGGTGATTG
3361 TCTATCACGCAAGGCTTTGTTTTGTACTGTTCAGAAATCTGTCACCTTTCTGCCTGCCCTTGTTTCCTGAATGAAATGCT
3441 TCTGGGGTTATTTATGAAAGGAGTGATCCTGGGGCAGGCAGGAGGCAGTGGGCTTCATGGCTCCTTGAAGTTATTACTGA
3521 TCTTGACCTTCTCTTTGGCTACCTTTAGACAAAGAATACGCCAATCAATACTTGGGGCTCTAAGTTTTACAATTGATATT
3601 TATTTGTATCATCTCTTTGTCTAGGAATGTAAAAGTGATTCTAAACTAAGATGTGTAATAAAAATCAATCAGATTTATTG
3681 TACCTACAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' aauUUGG--AGAUGAUUCAAGGGu 5'
             |||:   ||:|| ||||||| 
Target 5' tttAACTCAGCTGCTCAGTTCCCa 3'
 1648 - 1671 161.00 -19.90
2 
miRNA  3' aaUUUGGAGAUGAUUCAAGGGu 5'
            :||:| :|:| |||||:|: 
Target 5' taGAATCGTTGCCAAGTTTCTg 3'
 3143 - 3164 136.00 -11.70
3 
miRNA  3' aauUUGGAGAU---GAUUCAAGGGu 5'
             ::::| ||   :| ||||||: 
Target 5' tttGGTTTGTAAGTTTTAGTTCCTt 3'
 1238 - 1262 131.00 -9.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31533455 4 COSMIC
COSN32055676 5 COSMIC
COSN32055677 6 COSMIC
COSN31535791 39 COSMIC
COSN30173988 48 COSMIC
COSN30173980 50 COSMIC
COSN30120477 55 COSMIC
COSN18743240 62 COSMIC
COSN31489545 73 COSMIC
COSN30186065 74 COSMIC
COSN30105636 177 COSMIC
COSN8898439 280 COSMIC
COSN7998357 658 COSMIC
COSN21988689 659 COSMIC
COSN31489544 667 COSMIC
COSN31779281 820 COSMIC
COSN31482588 829 COSMIC
COSN5764149 848 COSMIC
COSN31961841 869 COSMIC
COSN21988690 1047 COSMIC
COSN9125761 1523 COSMIC
COSN26320270 1583 COSMIC
COSN23886000 1612 COSMIC
COSN26603156 1618 COSMIC
COSN28658857 1826 COSMIC
COSN32168197 1851 COSMIC
COSN24294835 2247 COSMIC
COSN20116376 2341 COSMIC
COSN20093748 2347 COSMIC
COSN20093751 2351 COSMIC
COSN20093754 2357 COSMIC
COSN20310709 2467 COSMIC
COSN19321489 2473 COSMIC
COSN31479694 2485 COSMIC
COSN19663902 2547 COSMIC
COSN31568671 2592 COSMIC
COSN31531609 2656 COSMIC
COSN31562105 2658 COSMIC
COSN9125762 2681 COSMIC
COSN31534308 2700 COSMIC
COSN28672595 2725 COSMIC
COSN31489606 2946 COSMIC
COSN21590918 2958 COSMIC
COSN24294836 3066 COSMIC
COSN31487141 3088 COSMIC
COSN26553273 3090 COSMIC
COSN31556026 3114 COSMIC
COSN23593571 3119 COSMIC
COSN31593871 3213 COSMIC
COSN28631092 3277 COSMIC
COSN6686530 3278 COSMIC
COSN1869733 3315 COSMIC
COSN32168198 3361 COSMIC
COSN17261145 3529 COSMIC
COSN31490782 3596 COSMIC
COSN5968739 3665 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1446937184 10 dbSNP
rs765757410 13 dbSNP
rs1174706029 16 dbSNP
rs775937476 17 dbSNP
rs1478580437 19 dbSNP
rs1171008615 24 dbSNP
rs367743069 25 dbSNP
rs764215915 26 dbSNP
rs943869051 29 dbSNP
rs1460616582 30 dbSNP
rs775386469 33 dbSNP
rs570155764 35 dbSNP
rs767783403 37 dbSNP
rs750262607 39 dbSNP
rs1342191014 40 dbSNP
rs755930353 44 dbSNP
rs1300922683 45 dbSNP
rs537690539 46 dbSNP
rs749212201 47 dbSNP
rs372070800 51 dbSNP
rs187778886 61 dbSNP
rs1029116 62 dbSNP
rs768905829 68 dbSNP
rs1272915266 72 dbSNP
rs1226842270 77 dbSNP
rs41288642 78 dbSNP
rs1452137942 80 dbSNP
rs996925431 82 dbSNP
rs1173742704 84 dbSNP
rs1304860474 91 dbSNP
rs1358481876 93 dbSNP
rs753293870 100 dbSNP
rs1448832189 113 dbSNP
rs1354082226 116 dbSNP
rs1448603895 117 dbSNP
rs1026903382 118 dbSNP
rs192442265 132 dbSNP
rs1168953538 133 dbSNP
rs1443826426 136 dbSNP
rs1004392287 142 dbSNP
rs1183302121 150 dbSNP
rs1015863649 152 dbSNP
rs960589819 155 dbSNP
rs992995671 158 dbSNP
rs185816205 159 dbSNP
rs1484340427 161 dbSNP
rs1352687106 165 dbSNP
rs1276024978 167 dbSNP
rs1245674524 172 dbSNP
rs1320356280 173 dbSNP
rs189123038 179 dbSNP
rs3746608 182 dbSNP
rs1278305980 188 dbSNP
rs1372629563 190 dbSNP
rs1313188652 191 dbSNP
rs1212779199 198 dbSNP
rs1240882413 201 dbSNP
rs1487997041 205 dbSNP
rs546286350 207 dbSNP
rs1372302664 208 dbSNP
rs774551489 209 dbSNP
rs1308615609 214 dbSNP
rs1194561590 218 dbSNP
rs554290140 222 dbSNP
rs575683531 228 dbSNP
rs761937238 231 dbSNP
rs543612348 232 dbSNP
rs1423758893 235 dbSNP
rs1265569919 236 dbSNP
rs570346888 238 dbSNP
rs1166398656 241 dbSNP
rs564896177 242 dbSNP
rs1424051650 243 dbSNP
rs917570514 247 dbSNP
rs949186349 249 dbSNP
rs924913665 254 dbSNP
rs957711569 263 dbSNP
rs988236628 266 dbSNP
rs1440309643 273 dbSNP
rs1178067981 279 dbSNP
rs1222489601 290 dbSNP
rs532458437 291 dbSNP
rs926363548 294 dbSNP
rs961023463 295 dbSNP
rs1054587943 311 dbSNP
rs893399151 315 dbSNP
rs1351252517 316 dbSNP
rs1288829704 317 dbSNP
rs1418553111 318 dbSNP
rs1386152087 325 dbSNP
rs913807344 326 dbSNP
rs1041745256 338 dbSNP
rs1458256943 352 dbSNP
rs1344216025 353 dbSNP
rs1156579864 355 dbSNP
rs764836006 364 dbSNP
rs540995308 366 dbSNP
rs1412075064 368 dbSNP
rs1199258614 372 dbSNP
rs1431972426 373 dbSNP
rs1269868293 383 dbSNP
rs559670375 388 dbSNP
rs1485776895 392 dbSNP
rs1433810656 394 dbSNP
rs1266465579 412 dbSNP
rs1273888943 413 dbSNP
rs375268394 418 dbSNP
rs1329867804 420 dbSNP
rs1262613229 423 dbSNP
rs1232389621 426 dbSNP
rs1368680210 433 dbSNP
rs1303381634 435 dbSNP
rs1040881030 437 dbSNP
rs750400311 438 dbSNP
rs1221353314 439 dbSNP
rs932704374 449 dbSNP
rs1458503276 458 dbSNP
rs1284500382 472 dbSNP
rs368987613 487 dbSNP
rs995309129 489 dbSNP
rs1048474801 495 dbSNP
rs761273468 501 dbSNP
rs181067293 511 dbSNP
rs1037467230 521 dbSNP
rs1177504772 529 dbSNP
rs548601327 536 dbSNP
rs1428216201 539 dbSNP
rs983086251 541 dbSNP
rs1190700222 549 dbSNP
rs766742840 551 dbSNP
rs970812647 553 dbSNP
rs1489888908 558 dbSNP
rs1198780609 563 dbSNP
rs754274443 569 dbSNP
rs528346969 571 dbSNP
rs936369632 572 dbSNP
rs970229114 574 dbSNP
rs1001932883 578 dbSNP
rs1032077333 581 dbSNP
rs1333157784 591 dbSNP
rs1478224214 597 dbSNP
rs1403722085 604 dbSNP
rs570168230 613 dbSNP
rs1192769042 614 dbSNP
rs957803991 630 dbSNP
rs546531424 637 dbSNP
rs1170838205 652 dbSNP
rs1450534988 661 dbSNP
rs1438958428 670 dbSNP
rs867776798 678 dbSNP
rs1042376404 686 dbSNP
rs1444138692 702 dbSNP
rs751246133 707 dbSNP
rs756914838 716 dbSNP
rs977082960 731 dbSNP
rs921067249 732 dbSNP
rs1200916439 735 dbSNP
rs932504142 743 dbSNP
rs184571941 749 dbSNP
rs6058646 768 dbSNP
rs147114862 773 dbSNP
rs1283167838 774 dbSNP
rs1350178533 784 dbSNP
rs995547847 786 dbSNP
rs1341686020 787 dbSNP
rs1334277464 788 dbSNP
rs1037030218 795 dbSNP
rs1026798268 799 dbSNP
rs1369221561 802 dbSNP
rs1307595189 809 dbSNP
rs753107518 812 dbSNP
rs886928186 818 dbSNP
rs1390473326 821 dbSNP
rs758772246 828 dbSNP
rs1473911483 841 dbSNP
rs1014482794 848 dbSNP
rs553402219 850 dbSNP
rs1312101732 855 dbSNP
rs138515212 870 dbSNP
rs1249519485 875 dbSNP
rs906139540 886 dbSNP
rs1000353805 897 dbSNP
rs1290850528 900 dbSNP
rs970629374 902 dbSNP
rs745332692 905 dbSNP
rs1207655724 909 dbSNP
rs980851296 910 dbSNP
rs1236098179 913 dbSNP
rs369539059 914 dbSNP
rs1179117601 927 dbSNP
rs535893144 931 dbSNP
rs1410986914 937 dbSNP
rs1382161317 943 dbSNP
rs1009734597 946 dbSNP
rs1322030918 952 dbSNP
rs769792610 954 dbSNP
rs1020583977 962 dbSNP
rs73906118 963 dbSNP
rs1391659239 967 dbSNP
rs1158717911 983 dbSNP
rs1455711470 984 dbSNP
rs1162174034 997 dbSNP
rs1414043099 1003 dbSNP
rs1184233449 1015 dbSNP
rs779834187 1020 dbSNP
rs1328909703 1023 dbSNP
rs1028177648 1029 dbSNP
rs1399936543 1034 dbSNP
rs1196423842 1038 dbSNP
rs1453127727 1040 dbSNP
rs535107644 1044 dbSNP
rs1207797200 1047 dbSNP
rs1333935755 1056 dbSNP
rs1339292005 1061 dbSNP
rs1229515739 1074 dbSNP
rs113170709 1081 dbSNP
rs62206867 1086 dbSNP
rs909756603 1093 dbSNP
rs1284900114 1094 dbSNP
rs757660682 1098 dbSNP
rs1438975748 1102 dbSNP
rs1332041668 1105 dbSNP
rs977581023 1109 dbSNP
rs1433234858 1113 dbSNP
rs1358606765 1122 dbSNP
rs558592489 1125 dbSNP
rs774071773 1126 dbSNP
rs1216961847 1137 dbSNP
rs940079094 1138 dbSNP
rs568877818 1142 dbSNP
rs541178699 1147 dbSNP
rs559688347 1150 dbSNP
rs1199112037 1154 dbSNP
rs1187516748 1156 dbSNP
rs1252544184 1159 dbSNP
rs931425840 1162 dbSNP
rs1186778668 1165 dbSNP
rs1048474875 1171 dbSNP
rs917236195 1185 dbSNP
rs1297382278 1190 dbSNP
rs1004453762 1210 dbSNP
rs1367562503 1215 dbSNP
rs950076478 1219 dbSNP
rs1447302054 1220 dbSNP
rs1357567924 1245 dbSNP
rs530010859 1247 dbSNP
rs865800490 1250 dbSNP
rs189893101 1251 dbSNP
rs1237512830 1261 dbSNP
rs1002123156 1270 dbSNP
rs1395421244 1274 dbSNP
rs906106944 1282 dbSNP
rs878881977 1292 dbSNP
rs773360132 1299 dbSNP
rs1466464892 1301 dbSNP
rs1186744277 1306 dbSNP
rs1054589719 1319 dbSNP
rs1033375789 1324 dbSNP
rs1173323379 1326 dbSNP
rs1212825319 1328 dbSNP
rs1400659007 1328 dbSNP
rs891967388 1330 dbSNP
rs1274584737 1333 dbSNP
rs1226576278 1340 dbSNP
rs1344765563 1344 dbSNP
rs34091034 1351 dbSNP
rs989125552 1353 dbSNP
rs760645178 1355 dbSNP
rs745915882 1364 dbSNP
rs1021141303 1365 dbSNP
rs978028108 1366 dbSNP
rs1448888317 1370 dbSNP
rs1375936134 1376 dbSNP
rs1307353143 1378 dbSNP
rs1427505422 1398 dbSNP
rs1277806125 1407 dbSNP
rs1372247219 1407 dbSNP
rs1318923887 1410 dbSNP
rs1170687781 1417 dbSNP
rs900943236 1425 dbSNP
rs1252802025 1446 dbSNP
rs1183051479 1448 dbSNP
rs1342651031 1451 dbSNP
rs1475257540 1451 dbSNP
rs150237564 1456 dbSNP
rs140971522 1468 dbSNP
rs975621866 1474 dbSNP
rs1221069289 1475 dbSNP
rs921486287 1487 dbSNP
rs1292316780 1508 dbSNP
rs137996507 1509 dbSNP
rs953959114 1515 dbSNP
rs1048340638 1519 dbSNP
rs887198139 1521 dbSNP
rs1352068342 1523 dbSNP
rs376284736 1528 dbSNP
rs1457239661 1531 dbSNP
rs1347697574 1533 dbSNP
rs1166482437 1544 dbSNP
rs780410167 1548 dbSNP
rs767551592 1552 dbSNP
rs1261977661 1558 dbSNP
rs1046698577 1559 dbSNP
rs906347192 1560 dbSNP
rs539579591 1561 dbSNP
rs1180623198 1563 dbSNP
rs1473880810 1564 dbSNP
rs1016741613 1566 dbSNP
rs961523652 1573 dbSNP
rs972616892 1593 dbSNP
rs41289844 1604 dbSNP
rs753046698 1605 dbSNP
rs1010584026 1609 dbSNP
rs1328553430 1612 dbSNP
rs1266364930 1615 dbSNP
rs1465871150 1618 dbSNP
rs950197089 1622 dbSNP
rs149479277 1623 dbSNP
rs11555356 1624 dbSNP
rs1020229929 1628 dbSNP
rs114698913 1631 dbSNP
rs1054725232 1632 dbSNP
rs1297714119 1636 dbSNP
rs975526875 1637 dbSNP
rs1364819658 1640 dbSNP
rs891940144 1646 dbSNP
rs946187560 1656 dbSNP
rs921517891 1660 dbSNP
rs1341235245 1661 dbSNP
rs952932250 1664 dbSNP
rs1194477742 1673 dbSNP
rs1402037513 1677 dbSNP
rs1464584724 1679 dbSNP
rs1246453025 1680 dbSNP
rs1210608792 1686 dbSNP
rs1299469904 1705 dbSNP
rs1261237060 1710 dbSNP
rs1040575092 1721 dbSNP
rs984119946 1722 dbSNP
rs1329079748 1723 dbSNP
rs908536765 1727 dbSNP
rs940122306 1728 dbSNP
rs1318139699 1730 dbSNP
rs900909251 1732 dbSNP
rs1383345113 1733 dbSNP
rs1275364358 1742 dbSNP
rs997928251 1748 dbSNP
rs1302760588 1762 dbSNP
rs1350009873 1763 dbSNP
rs1027904521 1772 dbSNP
rs1284619664 1777 dbSNP
rs1488347693 1795 dbSNP
rs757002811 1802 dbSNP
rs546788486 1820 dbSNP
rs1388483864 1824 dbSNP
rs2151437 1826 dbSNP
rs772824106 1841 dbSNP
rs937831156 1845 dbSNP
rs1432966136 1858 dbSNP
rs1199777066 1861 dbSNP
rs1005404176 1864 dbSNP
rs1282411972 1867 dbSNP
rs1294935791 1875 dbSNP
rs6119240 1875 dbSNP
rs1229224917 1882 dbSNP
rs1326479291 1887 dbSNP
rs554171907 1895 dbSNP
rs1010827749 1896 dbSNP
rs1377740905 1902 dbSNP
rs1438332991 1904 dbSNP
rs994401564 1916 dbSNP
rs1042101043 1917 dbSNP
rs1024181941 1936 dbSNP
rs902165037 1952 dbSNP
rs1368147169 1953 dbSNP
rs760682700 1964 dbSNP
rs980190971 1967 dbSNP
rs1259443414 1968 dbSNP
rs927250246 1970 dbSNP
rs112706154 1973 dbSNP
rs145950841 1977 dbSNP
rs913460245 1983 dbSNP
rs946352806 1989 dbSNP
rs996975934 1992 dbSNP
rs1264510789 1993 dbSNP
rs1028439575 1994 dbSNP
rs755574403 1995 dbSNP
rs1294432350 1996 dbSNP
rs1409802517 1998 dbSNP
rs1385978528 2009 dbSNP
rs534484595 2016 dbSNP
rs1372933974 2017 dbSNP
rs1348983553 2023 dbSNP
rs1040938543 2025 dbSNP
rs556104168 2026 dbSNP
rs933706089 2032 dbSNP
rs953004049 2033 dbSNP
rs1308467075 2036 dbSNP
rs1049488088 2037 dbSNP
rs889557978 2039 dbSNP
rs558377382 2041 dbSNP
rs1418734317 2045 dbSNP
rs1188538544 2046 dbSNP
rs1472244927 2050 dbSNP
rs1353788122 2055 dbSNP
rs1240649018 2067 dbSNP
rs1038075206 2071 dbSNP
rs897062414 2080 dbSNP
rs1160849705 2081 dbSNP
rs994102306 2086 dbSNP
rs908564263 2102 dbSNP
rs1487982739 2105 dbSNP
rs576823970 2109 dbSNP
rs1255242432 2112 dbSNP
rs961420061 2114 dbSNP
rs1443297565 2116 dbSNP
rs1330953736 2119 dbSNP
rs1321814166 2129 dbSNP
rs749234518 2130 dbSNP
rs971232485 2131 dbSNP
rs1158466597 2132 dbSNP
rs1455728833 2137 dbSNP
rs1178503551 2143 dbSNP
rs768511575 2168 dbSNP
rs1160299301 2171 dbSNP
rs1470384918 2175 dbSNP
rs982483002 2179 dbSNP
rs928078787 2184 dbSNP
rs778707995 2186 dbSNP
rs1253266890 2190 dbSNP
rs1207486303 2196 dbSNP
rs1463163102 2198 dbSNP
rs1286952269 2204 dbSNP
rs1001595965 2207 dbSNP
rs1420951282 2208 dbSNP
rs139816293 2222 dbSNP
rs1368089081 2223 dbSNP
rs1129058 2236 dbSNP
rs957469781 2246 dbSNP
rs1458558264 2247 dbSNP
rs1055006924 2248 dbSNP
rs374043250 2250 dbSNP
rs574818027 2254 dbSNP
rs915061536 2257 dbSNP
rs542120042 2263 dbSNP
rs772382288 2264 dbSNP
rs976366613 2271 dbSNP
rs923411075 2272 dbSNP
rs1171472103 2274 dbSNP
rs1455432955 2284 dbSNP
rs149741013 2288 dbSNP
rs1395239347 2296 dbSNP
rs1377608996 2304 dbSNP
rs1392607683 2306 dbSNP
rs1474133093 2308 dbSNP
rs13036263 2310 dbSNP
rs1320630030 2311 dbSNP
rs1457087279 2313 dbSNP
rs1163091690 2314 dbSNP
rs1167545602 2314 dbSNP
rs1256022651 2314 dbSNP
rs1270805622 2314 dbSNP
rs1278837680 2314 dbSNP
rs1310997337 2314 dbSNP
rs1358449309 2314 dbSNP
rs1375899326 2314 dbSNP
rs1407895016 2314 dbSNP
rs1417152867 2314 dbSNP
rs1421239899 2314 dbSNP
rs1436348114 2314 dbSNP
rs1472184288 2314 dbSNP
rs71187110 2314 dbSNP
rs1190774138 2327 dbSNP
rs1274680114 2327 dbSNP
rs1316432727 2328 dbSNP
rs1198488019 2329 dbSNP
rs1274427080 2329 dbSNP
rs1309434919 2330 dbSNP
rs1273992990 2331 dbSNP
rs1227747920 2332 dbSNP
rs1054051378 2333 dbSNP
rs549926934 2333 dbSNP
rs1416596218 2334 dbSNP
rs946646140 2334 dbSNP
rs1439777813 2336 dbSNP
rs568190368 2336 dbSNP
rs1165517875 2337 dbSNP
rs1042319358 2338 dbSNP
rs1481933226 2339 dbSNP
rs1404231218 2340 dbSNP
rs867235933 2340 dbSNP
rs1167701977 2341 dbSNP
rs879204527 2341 dbSNP
rs1180646157 2342 dbSNP
rs879561748 2343 dbSNP
rs1251757903 2345 dbSNP
rs1424475343 2345 dbSNP
rs1167359035 2347 dbSNP
rs902403956 2348 dbSNP
rs563542734 2349 dbSNP
rs1421847395 2351 dbSNP
rs1463840811 2356 dbSNP
rs879134038 2357 dbSNP
rs932135585 2362 dbSNP
rs1354919613 2365 dbSNP
rs1050585953 2366 dbSNP
rs1234006590 2369 dbSNP
rs1335336345 2372 dbSNP
rs910964311 2376 dbSNP
rs941155467 2377 dbSNP
rs1389390824 2378 dbSNP
rs1375336037 2380 dbSNP
rs1301019351 2392 dbSNP
rs1038405595 2396 dbSNP
rs559661766 2397 dbSNP
rs1414928528 2400 dbSNP
rs1327273644 2406 dbSNP
rs944388458 2416 dbSNP
rs1411789154 2429 dbSNP
rs1157642646 2433 dbSNP
rs1421235965 2435 dbSNP
rs1294741303 2437 dbSNP
rs76384879 2443 dbSNP
rs900294555 2450 dbSNP
rs1467278677 2483 dbSNP
rs995879339 2496 dbSNP
rs1214333398 2498 dbSNP
rs1464501180 2499 dbSNP
rs1028470641 2501 dbSNP
rs888600129 2502 dbSNP
rs1218384210 2510 dbSNP
rs773271886 2514 dbSNP
rs377469195 2516 dbSNP
rs1307396841 2527 dbSNP
rs1259050650 2534 dbSNP
rs1309661848 2546 dbSNP
rs1305182446 2548 dbSNP
rs1208554941 2551 dbSNP
rs907142072 2557 dbSNP
rs1001355886 2560 dbSNP
rs1383687784 2569 dbSNP
rs1005653004 2577 dbSNP
rs185958923 2580 dbSNP
rs893222487 2585 dbSNP
rs1175733633 2586 dbSNP
rs1452973781 2592 dbSNP
rs1483618621 2593 dbSNP
rs1194573021 2594 dbSNP
rs1190203917 2602 dbSNP
rs1448919611 2610 dbSNP
rs1011662180 2626 dbSNP
rs1020668428 2627 dbSNP
rs6058647 2628 dbSNP
rs1194695385 2633 dbSNP
rs62206868 2649 dbSNP
rs1305160113 2650 dbSNP
rs1234629707 2655 dbSNP
rs1411464324 2656 dbSNP
rs1292769713 2658 dbSNP
rs1030528738 2677 dbSNP
rs953666733 2686 dbSNP
rs770906099 2689 dbSNP
rs79778302 2698 dbSNP
rs1434764349 2700 dbSNP
rs1433239414 2703 dbSNP
rs3813921 2725 dbSNP
rs1174466984 2732 dbSNP
rs1429307875 2736 dbSNP
rs941073201 2740 dbSNP
rs868680763 2748 dbSNP
rs973863845 2749 dbSNP
rs918225401 2750 dbSNP
rs1429204622 2759 dbSNP
rs1398960142 2768 dbSNP
rs1187208653 2769 dbSNP
rs372338761 2772 dbSNP
rs1282250029 2773 dbSNP
rs1364450470 2777 dbSNP
rs1217905753 2787 dbSNP
rs1249271529 2791 dbSNP
rs377611124 2805 dbSNP
rs1228883581 2811 dbSNP
rs1307637291 2815 dbSNP
rs1045452270 2819 dbSNP
rs907111016 2826 dbSNP
rs1313352033 2843 dbSNP
rs1213674712 2844 dbSNP
rs1357952830 2847 dbSNP
rs550877957 2849 dbSNP
rs1394519538 2856 dbSNP
rs760127539 2861 dbSNP
rs774477375 2863 dbSNP
rs1462551350 2870 dbSNP
rs1040078598 2876 dbSNP
rs900158757 2884 dbSNP
rs1474161346 2885 dbSNP
rs931761186 2889 dbSNP
rs1188320715 2897 dbSNP
rs765800995 2902 dbSNP
rs1247969649 2903 dbSNP
rs1197240872 2914 dbSNP
rs1055595486 2917 dbSNP
rs1339446034 2919 dbSNP
rs1271946514 2923 dbSNP
rs1476267587 2930 dbSNP
rs1360353172 2932 dbSNP
rs1337515141 2933 dbSNP
rs892979653 2934 dbSNP
rs1189290393 2936 dbSNP
rs887490498 2938 dbSNP
rs73241234 2941 dbSNP
rs1016170620 2942 dbSNP
rs1392226817 2946 dbSNP
rs1394064404 2947 dbSNP
rs1235576874 2950 dbSNP
rs897445689 2960 dbSNP
rs1004187798 2961 dbSNP
rs536644946 2964 dbSNP
rs1175469592 2965 dbSNP
rs1035058703 2967 dbSNP
rs1020384307 2974 dbSNP
rs1377871126 2974 dbSNP
rs903297132 2981 dbSNP
rs959375727 2989 dbSNP
rs536695850 2994 dbSNP
rs1318549905 2999 dbSNP
rs997520721 3009 dbSNP
rs41289846 3010 dbSNP
rs953593993 3014 dbSNP
rs986354557 3017 dbSNP
rs1293257861 3021 dbSNP
rs1274344263 3023 dbSNP
rs1205113441 3025 dbSNP
rs1348947803 3026 dbSNP
rs968088609 3033 dbSNP
rs189052175 3034 dbSNP
rs764544936 3035 dbSNP
rs1370448258 3038 dbSNP
rs1301526458 3042 dbSNP
rs1443190897 3045 dbSNP
rs1395386302 3054 dbSNP
rs1016358044 3056 dbSNP
rs963598585 3065 dbSNP
rs1382729129 3066 dbSNP
rs1160027124 3068 dbSNP
rs534689344 3076 dbSNP
rs1372225832 3079 dbSNP
rs976391232 3080 dbSNP
rs1237059677 3081 dbSNP
rs572246723 3083 dbSNP
rs918329286 3087 dbSNP
rs763205993 3088 dbSNP
rs1307728316 3093 dbSNP
rs981100816 3094 dbSNP
rs761654631 3095 dbSNP
rs767240062 3097 dbSNP
rs937204834 3098 dbSNP
rs1055731506 3100 dbSNP
rs1224471580 3103 dbSNP
rs371004695 3114 dbSNP
rs1428740756 3129 dbSNP
rs1324547357 3140 dbSNP
rs1320286182 3147 dbSNP
rs909001582 3150 dbSNP
rs892935050 3151 dbSNP
rs574703715 3155 dbSNP
rs1450135063 3161 dbSNP
rs1041977119 3166 dbSNP
rs41289848 3174 dbSNP
rs375115950 3175 dbSNP
rs755734629 3189 dbSNP
rs535606869 3199 dbSNP
rs1185369449 3200 dbSNP
rs146278650 3215 dbSNP
rs1056752565 3216 dbSNP
rs1349960859 3218 dbSNP
rs1195105532 3219 dbSNP
rs889128816 3222 dbSNP
rs1485536125 3223 dbSNP
rs1438511817 3226 dbSNP
rs1255894844 3232 dbSNP
rs1158696271 3233 dbSNP
rs1409560021 3237 dbSNP
rs1312935136 3242 dbSNP
rs1272568392 3243 dbSNP
rs1212876936 3245 dbSNP
rs575492977 3246 dbSNP
rs1403207228 3255 dbSNP
rs1163642753 3272 dbSNP
rs1271839543 3276 dbSNP
rs14353 3277 dbSNP
rs13111 3278 dbSNP
rs1416402711 3294 dbSNP
rs1022294441 3296 dbSNP
rs573286105 3297 dbSNP
rs1169386030 3299 dbSNP
rs1376861764 3309 dbSNP
rs145619662 3314 dbSNP
rs968198155 3321 dbSNP
rs1171970961 3328 dbSNP
rs1475143191 3330 dbSNP
rs963994399 3338 dbSNP
rs1190433871 3343 dbSNP
rs540349868 3346 dbSNP
rs993672407 3347 dbSNP
rs1232506256 3349 dbSNP
rs999999585 3355 dbSNP
rs1439604816 3357 dbSNP
rs1026938491 3358 dbSNP
rs951124033 3365 dbSNP
rs981193952 3367 dbSNP
rs749540746 3369 dbSNP
rs755105611 3370 dbSNP
rs1234896399 3371 dbSNP
rs1227886554 3372 dbSNP
rs1274050192 3374 dbSNP
rs1379688733 3384 dbSNP
rs1335220681 3393 dbSNP
rs958375977 3396 dbSNP
rs561856337 3398 dbSNP
rs1355948424 3408 dbSNP
rs778795752 3413 dbSNP
rs953289260 3420 dbSNP
rs747974112 3423 dbSNP
rs1182482186 3445 dbSNP
rs1424738085 3448 dbSNP
rs1041515987 3456 dbSNP
rs908864677 3469 dbSNP
rs75177702 3478 dbSNP
rs1239035076 3483 dbSNP
rs1213073649 3485 dbSNP
rs529455543 3494 dbSNP
rs1180911002 3498 dbSNP
rs940482430 3504 dbSNP
rs1271177084 3505 dbSNP
rs17123202 3514 dbSNP
rs777653029 3515 dbSNP
rs928382130 3518 dbSNP
rs1305973979 3549 dbSNP
rs1221879114 3550 dbSNP
rs939518634 3553 dbSNP
rs1056610775 3561 dbSNP
rs1410978705 3562 dbSNP
rs778119936 3563 dbSNP
rs1338712300 3581 dbSNP
rs895432033 3583 dbSNP
rs1012500333 3586 dbSNP
rs933379615 3593 dbSNP
rs903839276 3594 dbSNP
rs1294128681 3598 dbSNP
rs879048321 3599 dbSNP
rs563084470 3600 dbSNP
rs1402809812 3606 dbSNP
rs1051815726 3616 dbSNP
rs1193299228 3618 dbSNP
rs1217061103 3624 dbSNP
rs533665914 3627 dbSNP
rs1031521735 3648 dbSNP
rs966121596 3653 dbSNP
rs770901164 3663 dbSNP
rs868619377 3669 dbSNP
rs1260086298 3671 dbSNP
rs747212189 3681 dbSNP
rs1275102361 3684 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 9371.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' aauUUGG--AGAUGAUUCAAGGGu 5'
             |||:   ||:|| ||||||| 
Target 5' uuuAACUCAGCUGCUCAGUUCCCa 3'
 		7 - 30
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000375712.3 | 3UTR | UUAUAUUUUAACUCAGCUGCUCAGUUCCCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
51 hsa-miR-4471 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT082398 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 4
MIRT295740 KIF3B kinesin family member 3B 2 2
MIRT453005 CCDC115 coiled-coil domain containing 115 2 16
MIRT456180 ZDHHC6 zinc finger DHHC-type containing 6 2 2
MIRT457455 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT464992 TUBB2A tubulin beta 2A class IIa 2 10
MIRT467615 SLC7A5 solute carrier family 7 member 5 2 2
MIRT468602 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT470070 PTGES2 prostaglandin E synthase 2 2 2
MIRT470562 POU2F1 POU class 2 homeobox 1 2 2
MIRT472274 NFIB nuclear factor I B 2 2
MIRT473471 MCFD2 multiple coagulation factor deficiency 2 2 2
MIRT477892 DVL3 dishevelled segment polarity protein 3 2 4
MIRT486345 TACC2 transforming acidic coiled-coil containing protein 2 2 6
MIRT487190 NFASC neurofascin 2 4
MIRT488690 NAT9 N-acetyltransferase 9 (putative) 2 2
MIRT492106 TAB2 TGF-beta activated kinase 1/MAP3K7 binding protein 2 2 2
MIRT495216 DSCR3 DSCR3 arrestin fold containing 2 2
MIRT495666 TUBAL3 tubulin alpha like 3 2 2
MIRT501833 NCOA2 nuclear receptor coactivator 2 2 2
MIRT507147 GATAD2B GATA zinc finger domain containing 2B 2 4
MIRT508522 GDI1 GDP dissociation inhibitor 1 2 2
MIRT513839 KCTD15 potassium channel tetramerization domain containing 15 2 4
MIRT513883 GTF2IRD2 GTF2I repeat domain containing 2 2 4
MIRT527336 COL18A1 collagen type XVIII alpha 1 chain 2 2
MIRT537390 FGD6 FYVE, RhoGEF and PH domain containing 6 2 2
MIRT538879 BTBD1 BTB domain containing 1 2 2
MIRT539044 ATXN1L ataxin 1 like 2 4
MIRT554387 SERTAD3 SERTA domain containing 3 2 2
MIRT554936 RAP1A RAP1A, member of RAS oncogene family 2 2
MIRT567517 FOXC1 forkhead box C1 2 2
MIRT573598 CERS1 ceramide synthase 1 2 2
MIRT642417 CILP2 cartilage intermediate layer protein 2 2 2
MIRT643296 PHKG1 phosphorylase kinase catalytic subunit gamma 1 2 2
MIRT652883 SYVN1 synoviolin 1 2 2
MIRT657928 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT660302 BHLHE40 basic helix-loop-helix family member e40 2 2
MIRT664717 SLC7A6OS solute carrier family 7 member 6 opposite strand 2 2
MIRT698889 SPTBN2 spectrin beta, non-erythrocytic 2 2 2
MIRT702007 MIDN midnolin 2 2
MIRT706808 APOL4 apolipoprotein L4 2 2
MIRT708330 DERL2 derlin 2 2 2
MIRT709885 ERCC6L ERCC excision repair 6 like, spindle assembly checkpoint helicase 2 2
MIRT711887 INSIG2 insulin induced gene 2 2 2
MIRT711956 CYP27B1 cytochrome P450 family 27 subfamily B member 1 2 2
MIRT715081 PRKAB2 protein kinase AMP-activated non-catalytic subunit beta 2 2 2
MIRT716218 TRIM17 tripartite motif containing 17 2 2
MIRT718124 CHST4 carbohydrate sulfotransferase 4 2 2
MIRT718725 VWA9 integrator complex subunit 14 2 2
MIRT719450 APBA1 amyloid beta precursor protein binding family A member 1 2 2
MIRT725666 ABI2 abl interactor 2 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4471 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-4471 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-miR-4471 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

Error report submission