pre-miRNA Information
pre-miRNA hsa-mir-548am   
Genomic Coordinates chrX: 16627012 - 16627085
Description Homo sapiens miR-548am stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548am-5p
Sequence 10| AAAAGUAAUUGCGGUUUUUGCC |31
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 3 X - 16627074 29233923 MiREDiBase
A-to-I 4 X - 16627073 29233923 MiREDiBase
A-to-I 7 X - 16627070 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs181147953 1 dbSNP
rs1023899452 12 dbSNP
rs1319380894 14 dbSNP
rs768483765 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PRRC1   
Synonyms -
Description proline rich coiled-coil 1
Transcript NM_130809   
Expression
Putative miRNA Targets on PRRC1
3'UTR of PRRC1
(miRNA target sites are highlighted)
>PRRC1|NM_130809|3'UTR
   1 GAGGAGACCTACCTGGGAGACTGAGACTTTCCCCCACTTTTAGCTTGATGTTAAAGAAGTGGTTGTACCTTCCTAAATCG
  81 AATAGTCTAAATGAATCCAGTAGTTTTTATCATTTTCCTGTAGCCTGCAATTTTTCTTTCTCTAGAAAGGCATCATGTCA
 161 TTCCAGGAGACAAAAAGAAACAAATCCTTTTTATAGTCATACCATTTCACCTATCATAGTACTCAAAAAAGAAAATATAC
 241 AAATCTATTTACAGCACAATTTAATATACCAGATTTATAAGGTGGAAATTCATGTGCAGAGACATTTAACTTAATGCCAT
 321 GTACTTGATTATTTTGTTCTTTAAAGAAGACATTATTAAAGAACATGTTGGTTGAATGTTTATAAAAGCATGATTTGCTT
 401 TGGCTTCATCTCTTTTCTGTCAGTCTTTGACTACTTTTGTATGTGCACACGATCTCAGGGCTGGTGCTGAGCAGCCTGCT
 481 CAACAGTCACTATAAGACACCTACTTGTCGGGAGATGTTCCACATTTCTGTGCATGTTTTCAGTAATATGGGCCAAAATA
 561 ATGGAATTGATTATTTTCCTTTTTGGCCATCACGTACACATGTAATCTGGAAAATCATACCTTTGTCAATTTTAAACATA
 641 ACTTTTGGCATTTCCCAGATTTATACTATGAACATTGGGGTAATACATTTTATTTTTTCATTGCTATATGACAGCTAAGG
 721 GGCAAATGATTCAAGTATATTTTAAATCAGAAGTATTCAAATTATTTTTGTATAATACTGTTCAGTACTTCCAAGAATAA
 801 GCTCTGACAACAGCCATTGTTTCTGCTTCCACTCATATTCTCTACACATTTTAATACAGAAATTTTTGAGAGGGGGTTAC
 881 TTTATTGCTTGTGGGTTAGTATGTCTCTTACTTCAATTAAGGTTACTTATTTGGTTTGCCTTAAGCATTACTTTTTTAAC
 961 TTTGTGCCATTTGGTCTTTACTTTTTATGGATGTTTTCAAAGAAACTATTTTATATTCAATCTAGTTTATTTAGTCTACT
1041 GTATTTCTATTTCGTGGAAGCCTTTTCCCCTCAAATAATATATTATATCATTTTTGGACTTATATAAATGATAATTAAAT
1121 AAATTTTTTTCTTAATACTGTTGGACTTTGTATATACAAGTTCAAATAACTTTTTCGAAGATAGTTTCTTATATAAATGT
1201 AATTTAATTTTTTTACTCTTCTATACAGTTCTTTAGATGTAAAAGAATTAGCACAATCTCTGGCAGTTTTATAAAAGCTG
1281 TTGAAGCTCTTGTCCTGCACTGTCTTTAGGTATCATAGGTATCAGGTTTGCTTTGTGTTAATGCCACTTCAAGTCATTAT
1361 TTGGTTTCTGCTATTTTTTTACCTGAGGATAAGAAGAATGAATATTAAATTTGAATATTAAATATATGTTACTTTCCAAG
1441 CACTGTATAATGACTGTTCAGTGAATATCAGACTTCCGTGTCATTAAAAGTCATGAGAGACAGCACAGAGAGGTTATAGG
1521 TTGCCTTGGTGTACTTTTGTCCAGGAGTAACAGGGACAGAATACTTTCTTTCTTTCCTTCAAGTACAAGAAGGCTTTCTC
1601 TACCATTTGCGTCTACACTTTATTTTAAAAGCTATCCTTTTCTAGTAGTATTTTATCATGGCAATGGCATGATGACAACA
1681 ACAGTCTTTCATTACAGACTGAAGGGAAGCATGTCCTTACTTAAAATAGTTCTGCTACTTTCCCTCCTATTATAAGGAAA
1761 TCTTACAGATTCTAAAAATACCTTAATTTTTCTTTGATTTTTATTTTACCAAGTCACAAATGTCTTTTTGATGTTTTGAG
1841 AATTGTTCTCATAGAATCACAAATACTGACATTTCATTAGATGATTATTTTCCTAGAATCCCCAAAGAGCAGTGGCAGTC
1921 CATGGCTTGGTTGAAGCTAGAAATTTTCCTGCCCCTGGTGACCTGGTAAGCCTCCTGCTCGGAACCGTGTGAGTGGGTGA
2001 GGAAGATGAGAGATGGTCAGATGGAAGAGAGAAATACATGAACTGCTCTGGCCTCTCTGGTTCTGTTCTTGGCCCAGAGT
2081 TTTTGAAAAGCAGCGGAGCATGACTGACTTCACATGCTCAGCTTTCTCAGCCTTTTGTTTATTTTGTTGTCCTTAGATTT
2161 CCCTGTTGTAAAAGGGGCAAGAAAAGTAACTCATCATCTCTAACACACCATGGCAGCTTAGCCAGGTAGTCTTAGTGGTG
2241 GTGTTTAGGCATAAGATATGCTGATCATCAGTCTCAGGCCACAGTTTCCTTCACTAATCGTCCAGCTTGAGTGTTCTGTT
2321 CTCTTCCTGCCCATTTCCTTGAACCTCCTGCTCTAGCCTTGGCGGAGGGAGAGTGCTATTTGCTTTTGTTCTCCCTCTGT
2401 CTTAGGAAAAGCCATCTTTAATATAGTTCTTCACCACTGTTGGGGTTGTTTTGTGATTTTTTTTTTCTTCCGAAGAACTC
2481 CTGGTTGTTATTGGATTTTGTATTTTAATACAAATTATTGAATTTTATAAGCTTGTACACAATATTTAATTAGTGTGAAA
2561 GGAAACAAAGAATGCAGGAAAAATAATTTAATATCAACCTCAGTTGACAAGGTGCTCAGATTATTCAATTCGGGATCCTC
2641 CTTTTGTTAGGTTTTTGAGACAACCCTAGACCTAAACTGTGTCACAGACTTCTGAATGTTTAGGCAGTGCTAGTAATTTC
2721 CTCGTAATGATTCTGTTATTACTTTCCTATTCTTTATTCCTCTTTCTTCTGAAGATTAATGAAGTTGAAAATTGAGGTGG
2801 ATAAATACAAAAAGGTAGTGTGATAGTATAAGTATCTAAGTGCAGATGAAAGTGTGTTATATACATCCATTCAAAATTAT
2881 GCAAGTTAGTAATTACTCAGGGTTAACTAAATTACTTTAATATGCTGTTGAATCTACTCTGTTCCTTGGCTAGAAAAAAT
2961 TATAAACAGGACTTTGTAGTTTGGGAAGCCAAATTGATAATATTCTATGTTCTAAAAGTTGGGCTATACATAAATTATTA
3041 AGAAATATGGATTTTTATTCCCAGGATATGGTGTTCATTTTATGATATTACGCAGGATGATGTATTGAGTAAAATCAGTT
3121 TTGTAAATATGTAAATATGTCATAAATAAACAATGCTTTGACTTATTTCCAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ccGUUUUU--GGCGUUAAUGAAAa 5'
            :|| :|  |:|: |||||||| 
Target 5' cgTAATGATTCTGTTATTACTTTc 3'
2723 - 2746 158.00 -9.20
2
miRNA  3' ccguuuUUGGCGUUAAUGAAAa 5'
                |||:  ||||||||| 
Target 5' agggttAACT-AAATTACTTTa 3'
2899 - 2919 155.00 -9.10
3
miRNA  3' ccGUUUUUGG--------CGUUAAUGAAAa 5'
            ||:|||::        | ::||||||| 
Target 5' taCAGAAATTTTTGAGAGGGGGTTACTTTa 3'
855 - 884 150.00 -8.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30510553 14 COSMIC
COSN30139232 26 COSMIC
COSN31518236 28 COSMIC
COSN30480225 33 COSMIC
COSN31606286 57 COSMIC
COSN31603622 81 COSMIC
COSN30450567 87 COSMIC
COSN31517594 108 COSMIC
COSN31552847 109 COSMIC
COSN31567878 277 COSMIC
COSN28697223 352 COSMIC
COSN31487297 393 COSMIC
COSN20101769 493 COSMIC
COSN6510297 759 COSMIC
COSN21872068 906 COSMIC
COSN25252432 925 COSMIC
COSN21431110 999 COSMIC
COSN26583384 1020 COSMIC
COSN31546626 1075 COSMIC
COSN30542640 1097 COSMIC
COSN1306699 1167 COSMIC
COSN216976 1178 COSMIC
COSN32190117 1284 COSMIC
COSN28741512 1730 COSMIC
COSN21594999 1867 COSMIC
COSM9412013 1888 COSMIC
COSM9440733 1893 COSMIC
COSM9104498 1930 COSMIC
COSM8551131 1956 COSMIC
COSN31594551 2020 COSMIC
COSN28671743 2033 COSMIC
COSN31553289 2040 COSMIC
COSN30543341 2056 COSMIC
COSN22601374 2164 COSMIC
COSN28887062 2174 COSMIC
COSN28201925 2211 COSMIC
COSN9404042 2260 COSMIC
COSN4625177 2465 COSMIC
COSN20101770 2594 COSMIC
COSN17922949 2690 COSMIC
COSN14848309 2865 COSMIC
COSN14741900 2934 COSMIC
COSN8491798 2977 COSMIC
COSN22999467 3031 COSMIC
COSN15811107 3149 COSMIC
COSN31589057 3157 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1404573276 8 dbSNP
rs144042656 11 dbSNP
rs1452781714 11 dbSNP
rs749212893 16 dbSNP
rs1443072706 20 dbSNP
rs1280047411 23 dbSNP
rs371227454 24 dbSNP
rs1221858918 28 dbSNP
rs778465823 29 dbSNP
rs893952422 30 dbSNP
rs747698715 35 dbSNP
rs771843032 36 dbSNP
rs773053952 44 dbSNP
rs760413466 45 dbSNP
rs146441073 47 dbSNP
rs775748496 52 dbSNP
rs909676559 55 dbSNP
rs1169660959 56 dbSNP
rs941013785 61 dbSNP
rs111993178 63 dbSNP
rs1383675461 65 dbSNP
rs1183196144 66 dbSNP
rs779435427 70 dbSNP
rs371639690 72 dbSNP
rs1258333823 73 dbSNP
rs1399324481 80 dbSNP
rs751150229 81 dbSNP
rs139833536 84 dbSNP
rs1021184947 89 dbSNP
rs7729354 99 dbSNP
rs932210951 103 dbSNP
rs1314010064 104 dbSNP
rs1245044304 107 dbSNP
rs977082296 115 dbSNP
rs1304233609 118 dbSNP
rs1390269600 125 dbSNP
rs1302315256 130 dbSNP
rs768070236 143 dbSNP
rs1396445249 147 dbSNP
rs557186225 153 dbSNP
rs756557493 154 dbSNP
rs1364101618 156 dbSNP
rs954598712 168 dbSNP
rs1272808306 177 dbSNP
rs1458617495 185 dbSNP
rs75251877 193 dbSNP
rs1179790129 200 dbSNP
rs1219087107 201 dbSNP
rs1041804175 210 dbSNP
rs910393956 211 dbSNP
rs963211739 217 dbSNP
rs1456110084 225 dbSNP
rs904635935 239 dbSNP
rs117615821 243 dbSNP
rs1358062707 244 dbSNP
rs1034328309 246 dbSNP
rs1219616239 248 dbSNP
rs958961336 251 dbSNP
rs530794035 252 dbSNP
rs1450668139 253 dbSNP
rs544629642 256 dbSNP
rs1350539366 258 dbSNP
rs1375100912 260 dbSNP
rs1478437446 263 dbSNP
rs1412206225 266 dbSNP
rs1014138754 268 dbSNP
rs780372795 273 dbSNP
rs1406281683 278 dbSNP
rs1393206292 282 dbSNP
rs1170522978 289 dbSNP
rs1024679416 292 dbSNP
rs1046370576 294 dbSNP
rs1422093871 295 dbSNP
rs1453230455 299 dbSNP
rs1412779070 300 dbSNP
rs1161383177 303 dbSNP
rs928077953 305 dbSNP
rs951245962 308 dbSNP
rs1268043500 319 dbSNP
rs1463114592 344 dbSNP
rs10695 352 dbSNP
rs909730641 355 dbSNP
rs1204186196 357 dbSNP
rs1329319381 365 dbSNP
rs1269493169 366 dbSNP
rs962411664 369 dbSNP
rs1322073781 375 dbSNP
rs975133625 378 dbSNP
rs530261640 390 dbSNP
rs755223878 395 dbSNP
rs1042700814 406 dbSNP
rs761264105 409 dbSNP
rs1277560990 411 dbSNP
rs1315957214 413 dbSNP
rs1322676269 425 dbSNP
rs75897439 426 dbSNP
rs902759851 435 dbSNP
rs1428576042 438 dbSNP
rs1173062156 442 dbSNP
rs1478927482 445 dbSNP
rs933684617 446 dbSNP
rs560592089 447 dbSNP
rs199699023 449 dbSNP
rs946222297 451 dbSNP
rs1041881270 452 dbSNP
rs1249461102 457 dbSNP
rs1265812729 457 dbSNP
rs1201255817 461 dbSNP
rs954377751 466 dbSNP
rs1007732321 470 dbSNP
rs904711349 473 dbSNP
rs1017319222 481 dbSNP
rs936031462 484 dbSNP
rs200480403 489 dbSNP
rs1366225328 493 dbSNP
rs1322779545 496 dbSNP
rs1450597559 507 dbSNP
rs1358651983 509 dbSNP
rs552324854 510 dbSNP
rs569224009 511 dbSNP
rs919207793 525 dbSNP
rs894471135 534 dbSNP
rs1165611698 535 dbSNP
rs950619637 537 dbSNP
rs1014712675 550 dbSNP
rs1181363372 553 dbSNP
rs1024209482 558 dbSNP
rs887054927 574 dbSNP
rs779057603 575 dbSNP
rs190031798 578 dbSNP
rs1444662465 581 dbSNP
rs1016682448 595 dbSNP
rs962523927 604 dbSNP
rs975121921 612 dbSNP
rs550576780 620 dbSNP
rs1204823922 636 dbSNP
rs1300182827 638 dbSNP
rs1244043035 639 dbSNP
rs567146463 639 dbSNP
rs927982870 643 dbSNP
rs1028530301 658 dbSNP
rs1284859730 660 dbSNP
rs375172596 666 dbSNP
rs1250081669 669 dbSNP
rs1055621726 671 dbSNP
rs955048346 674 dbSNP
rs1430241767 680 dbSNP
rs747625284 683 dbSNP
rs986900173 686 dbSNP
rs1161379312 689 dbSNP
rs145719480 693 dbSNP
rs913580127 696 dbSNP
rs756550494 701 dbSNP
rs977673942 704 dbSNP
rs536386226 707 dbSNP
rs1051316904 710 dbSNP
rs1182086408 716 dbSNP
rs936188108 720 dbSNP
rs1287801434 721 dbSNP
rs890125017 735 dbSNP
rs1007185804 736 dbSNP
rs1321386073 737 dbSNP
rs1055889379 741 dbSNP
rs1290804298 749 dbSNP
rs1353944021 751 dbSNP
rs1216369207 760 dbSNP
rs366515 762 dbSNP
rs749137423 770 dbSNP
rs963148464 771 dbSNP
rs994655071 773 dbSNP
rs1256047679 775 dbSNP
rs950068924 776 dbSNP
rs1422202259 778 dbSNP
rs1301096868 779 dbSNP
rs572949836 781 dbSNP
rs1166430382 786 dbSNP
rs1350158567 786 dbSNP
rs1046119826 788 dbSNP
rs1410570417 789 dbSNP
rs1159184965 805 dbSNP
rs1381207997 809 dbSNP
rs1419279316 811 dbSNP
rs538854254 812 dbSNP
rs1004049953 816 dbSNP
rs1016837558 820 dbSNP
rs982002512 834 dbSNP
rs898330980 836 dbSNP
rs959677850 843 dbSNP
rs1358321689 844 dbSNP
rs1267585347 846 dbSNP
rs745786196 857 dbSNP
rs1303417163 858 dbSNP
rs1331166197 868 dbSNP
rs1281276054 870 dbSNP
rs1401407580 871 dbSNP
rs1368033367 891 dbSNP
rs1294985197 895 dbSNP
rs1428232538 896 dbSNP
rs1393835300 899 dbSNP
rs769668561 903 dbSNP
rs1028058673 904 dbSNP
rs1320679017 906 dbSNP
rs1458318092 907 dbSNP
rs1377220340 908 dbSNP
rs955270196 911 dbSNP
rs1174542051 912 dbSNP
rs1433039360 915 dbSNP
rs915339229 917 dbSNP
rs986587281 922 dbSNP
rs1463734343 924 dbSNP
rs978146649 928 dbSNP
rs149665448 931 dbSNP
rs966375386 934 dbSNP
rs1261250513 943 dbSNP
rs934111019 946 dbSNP
rs1312645200 950 dbSNP
rs1211255053 951 dbSNP
rs1303143229 961 dbSNP
rs977662514 965 dbSNP
rs1364042116 975 dbSNP
rs1255960695 976 dbSNP
rs1297853544 977 dbSNP
rs1436700737 978 dbSNP
rs1482551806 991 dbSNP
rs539936610 995 dbSNP
rs1301688360 1002 dbSNP
rs364981 1002 dbSNP
rs1178712493 1004 dbSNP
rs1448020609 1005 dbSNP
rs890039645 1007 dbSNP
rs1439326653 1019 dbSNP
rs943059343 1020 dbSNP
rs145422063 1021 dbSNP
rs1199877747 1022 dbSNP
rs1427511682 1023 dbSNP
rs898805587 1025 dbSNP
rs192276707 1042 dbSNP
rs1025986276 1045 dbSNP
rs916096216 1050 dbSNP
rs495916 1054 dbSNP
rs1332797890 1055 dbSNP
rs370490327 1068 dbSNP
rs1445382384 1070 dbSNP
rs908528472 1072 dbSNP
rs139986598 1079 dbSNP
rs560233995 1081 dbSNP
rs1220223112 1084 dbSNP
rs1169559774 1085 dbSNP
rs1366897092 1086 dbSNP
rs496004 1086 dbSNP
rs1186960658 1098 dbSNP
rs1424454824 1100 dbSNP
rs978177361 1102 dbSNP
rs552384534 1104 dbSNP
rs923981658 1105 dbSNP
rs556605 1111 dbSNP
rs566037597 1112 dbSNP
rs1196825256 1116 dbSNP
rs531926434 1116 dbSNP
rs911489061 1121 dbSNP
rs996732025 1122 dbSNP
rs1248716478 1123 dbSNP
rs1322993440 1124 dbSNP
rs1488917933 1124 dbSNP
rs1315502752 1125 dbSNP
rs1050001865 1126 dbSNP
rs890965246 1127 dbSNP
rs115145647 1133 dbSNP
rs1309053221 1134 dbSNP
rs1038999689 1138 dbSNP
rs773330357 1141 dbSNP
rs1479422726 1143 dbSNP
rs1162862895 1144 dbSNP
rs1458539265 1153 dbSNP
rs898844171 1158 dbSNP
rs1424238518 1159 dbSNP
rs425532 1166 dbSNP
rs1000559907 1177 dbSNP
rs886182105 1178 dbSNP
rs1266314709 1183 dbSNP
rs1210049545 1193 dbSNP
rs1489223763 1195 dbSNP
rs565327436 1199 dbSNP
rs189374962 1201 dbSNP
rs1033252135 1208 dbSNP
rs957582648 1209 dbSNP
rs1293316417 1217 dbSNP
rs550238562 1219 dbSNP
rs534649239 1221 dbSNP
rs1323212648 1224 dbSNP
rs546543193 1240 dbSNP
rs1393092626 1243 dbSNP
rs410877 1245 dbSNP
rs971621276 1254 dbSNP
rs981928565 1261 dbSNP
rs1279460891 1265 dbSNP
rs538715604 1282 dbSNP
rs1476952143 1285 dbSNP
rs10055438 1311 dbSNP
rs1199220080 1317 dbSNP
rs1216929919 1320 dbSNP
rs940012041 1351 dbSNP
rs1207612321 1356 dbSNP
rs968041230 1356 dbSNP
rs1464931680 1360 dbSNP
rs1269400838 1368 dbSNP
rs1207398580 1373 dbSNP
rs1343421117 1373 dbSNP
rs1234355105 1374 dbSNP
rs569754280 1374 dbSNP
rs1373526171 1377 dbSNP
rs868331273 1385 dbSNP
rs1295634804 1391 dbSNP
rs1434546651 1397 dbSNP
rs1245187335 1399 dbSNP
rs1389453255 1399 dbSNP
rs867182315 1403 dbSNP
rs932523164 1410 dbSNP
rs1031123587 1416 dbSNP
rs1172969184 1422 dbSNP
rs1049676285 1426 dbSNP
rs1299940810 1437 dbSNP
rs1387983051 1438 dbSNP
rs1263874397 1440 dbSNP
rs1187540187 1446 dbSNP
rs1449608084 1451 dbSNP
rs563455077 1457 dbSNP
rs987267560 1467 dbSNP
rs1441211373 1477 dbSNP
rs890946783 1478 dbSNP
rs1165686126 1479 dbSNP
rs181829445 1511 dbSNP
rs1272823200 1512 dbSNP
rs1008101381 1513 dbSNP
rs1405613612 1517 dbSNP
rs1366114807 1520 dbSNP
rs1272030534 1534 dbSNP
rs974354661 1538 dbSNP
rs72792019 1543 dbSNP
rs1421947543 1552 dbSNP
rs930346917 1555 dbSNP
rs1368461735 1560 dbSNP
rs1299164667 1561 dbSNP
rs902294955 1562 dbSNP
rs1047371938 1564 dbSNP
rs767085072 1564 dbSNP
rs907652703 1565 dbSNP
rs1472158915 1567 dbSNP
rs1000632073 1568 dbSNP
rs1237475415 1570 dbSNP
rs1429153043 1571 dbSNP
rs1486906440 1573 dbSNP
rs397415 1574 dbSNP
rs1204834674 1584 dbSNP
rs959032430 1595 dbSNP
rs1343165374 1597 dbSNP
rs1275354290 1599 dbSNP
rs111651218 1601 dbSNP
rs116445834 1612 dbSNP
rs971952144 1614 dbSNP
rs1012452107 1619 dbSNP
rs1043685202 1622 dbSNP
rs903762201 1624 dbSNP
rs1348484345 1626 dbSNP
rs1307219805 1637 dbSNP
rs143376099 1647 dbSNP
rs981661519 1648 dbSNP
rs1356092894 1649 dbSNP
rs577446378 1649 dbSNP
rs1218545492 1652 dbSNP
rs777681254 1656 dbSNP
rs1476489864 1662 dbSNP
rs1410334762 1664 dbSNP
rs1286420746 1665 dbSNP
rs1487926408 1669 dbSNP
rs1234884101 1675 dbSNP
rs146637545 1675 dbSNP
rs961417418 1676 dbSNP
rs955332368 1690 dbSNP
rs1290689747 1695 dbSNP
rs1235175040 1698 dbSNP
rs1190869926 1702 dbSNP
rs1239122377 1709 dbSNP
rs974130104 1712 dbSNP
rs1291512957 1716 dbSNP
rs1180742323 1721 dbSNP
rs1435311693 1722 dbSNP
rs1350066085 1726 dbSNP
rs762537080 1732 dbSNP
rs1383054021 1747 dbSNP
rs919894457 1751 dbSNP
rs1441109138 1754 dbSNP
rs435795 1763 dbSNP
rs985778847 1767 dbSNP
rs553448486 1773 dbSNP
rs1189776132 1774 dbSNP
rs778540460 1774 dbSNP
rs778233782 1782 dbSNP
rs943858233 1783 dbSNP
rs1042218469 1787 dbSNP
rs1215675475 1789 dbSNP
rs1463594002 1798 dbSNP
rs964283486 1806 dbSNP
rs974640844 1818 dbSNP
rs1298962138 1825 dbSNP
rs902367060 1825 dbSNP
rs920207560 1834 dbSNP
rs763467604 1841 dbSNP
rs764555821 1846 dbSNP
rs1386273409 1849 dbSNP
rs936369680 1851 dbSNP
rs1305135868 1852 dbSNP
rs1424215722 1853 dbSNP
rs1179262839 1865 dbSNP
rs1161871186 1871 dbSNP
rs1372695087 1872 dbSNP
rs372606389 1875 dbSNP
rs951612612 1876 dbSNP
rs73333200 1883 dbSNP
rs1335032256 1885 dbSNP
rs907559895 1887 dbSNP
rs866697033 1893 dbSNP
rs1347426166 1895 dbSNP
rs35551860 1900 dbSNP
rs1439956168 1902 dbSNP
rs894799096 1907 dbSNP
rs1316826710 1913 dbSNP
rs1383292601 1914 dbSNP
rs761939593 1920 dbSNP
rs938981110 1923 dbSNP
rs1341106429 1925 dbSNP
rs1195867891 1927 dbSNP
rs1056217409 1931 dbSNP
rs1271684990 1931 dbSNP
rs1331883574 1932 dbSNP
rs1187142692 1933 dbSNP
rs1011935737 1934 dbSNP
rs562779839 1938 dbSNP
rs1244339792 1941 dbSNP
rs1254151636 1953 dbSNP
rs947945692 1954 dbSNP
rs1182195823 1955 dbSNP
rs1043564730 1958 dbSNP
rs531820925 1967 dbSNP
rs768561894 1969 dbSNP
rs1389417597 1975 dbSNP
rs1023624912 1976 dbSNP
rs774217136 1981 dbSNP
rs147931114 1982 dbSNP
rs1406796532 1985 dbSNP
rs1451626981 1986 dbSNP
rs141708541 1987 dbSNP
rs147072598 1988 dbSNP
rs779853951 1989 dbSNP
rs1269039303 1994 dbSNP
rs1252364648 1997 dbSNP
rs753628475 1998 dbSNP
rs754915709 2000 dbSNP
rs546646425 2005 dbSNP
rs1264289295 2007 dbSNP
rs1461319807 2008 dbSNP
rs961533316 2009 dbSNP
rs1008643426 2015 dbSNP
rs778780080 2020 dbSNP
rs974121828 2022 dbSNP
rs747645976 2026 dbSNP
rs1192783143 2030 dbSNP
rs418657 2033 dbSNP
rs1254079306 2038 dbSNP
rs1481445385 2041 dbSNP
rs954166710 2044 dbSNP
rs985508652 2049 dbSNP
rs186478482 2050 dbSNP
rs1202716589 2072 dbSNP
rs771662878 2074 dbSNP
rs772621603 2094 dbSNP
rs912568780 2095 dbSNP
rs1027127528 2096 dbSNP
rs552313152 2097 dbSNP
rs1228253207 2098 dbSNP
rs1356613808 2101 dbSNP
rs1315210263 2107 dbSNP
rs1276345769 2109 dbSNP
rs1345674718 2111 dbSNP
rs1222757497 2119 dbSNP
rs878890721 2121 dbSNP
rs375542601 2137 dbSNP
rs1458761640 2143 dbSNP
rs879154153 2145 dbSNP
rs1298954968 2150 dbSNP
rs978007387 2152 dbSNP
rs923759419 2164 dbSNP
rs1164093451 2166 dbSNP
rs760192366 2172 dbSNP
rs1419882756 2174 dbSNP
rs542166247 2178 dbSNP
rs1482589966 2182 dbSNP
rs115900754 2186 dbSNP
rs1247585026 2187 dbSNP
rs947815874 2193 dbSNP
rs979149624 2201 dbSNP
rs373715583 2205 dbSNP
rs537664915 2211 dbSNP
rs947809156 2225 dbSNP
rs1046042450 2227 dbSNP
rs1466248043 2232 dbSNP
rs1052391635 2233 dbSNP
rs1227013841 2241 dbSNP
rs754284290 2242 dbSNP
rs1350240833 2245 dbSNP
rs1170030040 2247 dbSNP
rs1308083290 2248 dbSNP
rs906192399 2256 dbSNP
rs1388704013 2259 dbSNP
rs1388797995 2259 dbSNP
rs1293042668 2267 dbSNP
rs891029806 2271 dbSNP
rs138389909 2272 dbSNP
rs1325287841 2273 dbSNP
rs1003044887 2274 dbSNP
rs1364162770 2279 dbSNP
rs944081839 2293 dbSNP
rs1331523701 2300 dbSNP
rs17164810 2301 dbSNP
rs897327750 2302 dbSNP
rs187257513 2310 dbSNP
rs1319879401 2317 dbSNP
rs1218732341 2318 dbSNP
rs1275664262 2323 dbSNP
rs1356317005 2327 dbSNP
rs1350505896 2336 dbSNP
rs1250224545 2346 dbSNP
rs575865601 2350 dbSNP
rs1211203355 2351 dbSNP
rs576816777 2354 dbSNP
rs1007407111 2355 dbSNP
rs887279320 2357 dbSNP
rs544508770 2358 dbSNP
rs758523851 2364 dbSNP
rs965769576 2365 dbSNP
rs1456666532 2371 dbSNP
rs1385515852 2373 dbSNP
rs1160132973 2374 dbSNP
rs432672 2379 dbSNP
rs1455260704 2385 dbSNP
rs1245671304 2392 dbSNP
rs1266041047 2395 dbSNP
rs1187344274 2406 dbSNP
rs1446956471 2420 dbSNP
rs1285552442 2423 dbSNP
rs1478408889 2424 dbSNP
rs1343312468 2432 dbSNP
rs1193084704 2437 dbSNP
rs1279957845 2438 dbSNP
rs400035 2439 dbSNP
rs1295520510 2440 dbSNP
rs143860589 2440 dbSNP
rs989283844 2441 dbSNP
rs1326993160 2445 dbSNP
rs1320201620 2447 dbSNP
rs1394132278 2448 dbSNP
rs1374640236 2452 dbSNP
rs1173960682 2454 dbSNP
rs1023736123 2457 dbSNP
rs1387886223 2457 dbSNP
rs201646085 2457 dbSNP
rs772882464 2457 dbSNP
rs1475440024 2462 dbSNP
rs1243270672 2468 dbSNP
rs1195942491 2469 dbSNP
rs1164115462 2471 dbSNP
rs916417770 2472 dbSNP
rs1390244966 2473 dbSNP
rs1211980163 2474 dbSNP
rs1486803671 2477 dbSNP
rs1272712763 2478 dbSNP
rs1214127344 2480 dbSNP
rs542093572 2491 dbSNP
rs757359162 2492 dbSNP
rs562286973 2501 dbSNP
rs947789672 2507 dbSNP
rs1354697845 2508 dbSNP
rs1313287444 2512 dbSNP
rs1416371648 2515 dbSNP
rs1046579320 2517 dbSNP
rs925024594 2518 dbSNP
rs1342324088 2521 dbSNP
rs1400462041 2526 dbSNP
rs780202777 2534 dbSNP
rs987960410 2536 dbSNP
rs1417743988 2538 dbSNP
rs369382341 2541 dbSNP
rs1324235496 2543 dbSNP
rs940401857 2543 dbSNP
rs1249961594 2544 dbSNP
rs943969721 2546 dbSNP
rs1438542693 2549 dbSNP
rs1275245355 2550 dbSNP
rs1208088307 2551 dbSNP
rs1265705177 2554 dbSNP
rs1358258463 2555 dbSNP
rs1037227349 2560 dbSNP
rs150188499 2561 dbSNP
rs1288554519 2564 dbSNP
rs1293801222 2573 dbSNP
rs899839176 2574 dbSNP
rs138685338 2575 dbSNP
rs931274018 2582 dbSNP
rs1355867652 2584 dbSNP
rs1442520395 2584 dbSNP
rs1205001841 2587 dbSNP
rs1321063441 2589 dbSNP
rs1460436753 2590 dbSNP
rs34875917 2591 dbSNP
rs201273984 2592 dbSNP
rs202215662 2593 dbSNP
rs1476435597 2594 dbSNP
rs199717968 2594 dbSNP
rs887182488 2595 dbSNP
rs995730463 2596 dbSNP
rs1425673292 2598 dbSNP
rs1450373654 2611 dbSNP
rs1188302277 2617 dbSNP
rs1048534535 2618 dbSNP
rs1004364637 2620 dbSNP
rs1196908840 2632 dbSNP
rs1468077519 2636 dbSNP
rs889955517 2641 dbSNP
rs1006943763 2642 dbSNP
rs1326911319 2643 dbSNP
rs1057478688 2644 dbSNP
rs895957840 2665 dbSNP
rs1375141612 2669 dbSNP
rs1272705822 2672 dbSNP
rs1439611989 2673 dbSNP
rs1371100312 2680 dbSNP
rs1020154532 2681 dbSNP
rs1161447428 2693 dbSNP
rs149329028 2694 dbSNP
rs1023180078 2703 dbSNP
rs552172737 2705 dbSNP
rs568873557 2707 dbSNP
rs1000525760 2724 dbSNP
rs768615006 2725 dbSNP
rs144578158 2732 dbSNP
rs1312754385 2735 dbSNP
rs375145495 2738 dbSNP
rs139317539 2740 dbSNP
rs987867032 2743 dbSNP
rs1195540767 2748 dbSNP
rs1243240603 2753 dbSNP
rs1463522897 2759 dbSNP
rs1241428313 2761 dbSNP
rs912396759 2762 dbSNP
rs1354952878 2764 dbSNP
rs965206708 2777 dbSNP
rs1233128186 2809 dbSNP
rs376525481 2809 dbSNP
rs957916265 2811 dbSNP
rs921189361 2813 dbSNP
rs1432222953 2817 dbSNP
rs568242270 2819 dbSNP
rs1259531032 2823 dbSNP
rs931345706 2825 dbSNP
rs541402596 2828 dbSNP
rs916382445 2829 dbSNP
rs773279569 2830 dbSNP
rs763044154 2833 dbSNP
rs981882265 2833 dbSNP
rs148258615 2836 dbSNP
rs778552907 2836 dbSNP
rs1460160548 2848 dbSNP
rs533874252 2853 dbSNP
rs1172095588 2864 dbSNP
rs441265 2865 dbSNP
rs189818915 2880 dbSNP
rs1035958625 2881 dbSNP
rs1175661310 2886 dbSNP
rs920281122 2890 dbSNP
rs1418801902 2903 dbSNP
rs765501747 2903 dbSNP
rs931527362 2911 dbSNP
rs1209840947 2912 dbSNP
rs1362015488 2912 dbSNP
rs1281992387 2926 dbSNP
rs384556 2934 dbSNP
rs1306408957 2937 dbSNP
rs889955059 2943 dbSNP
rs1215676507 2959 dbSNP
rs1364634886 2967 dbSNP
rs1007492062 2968 dbSNP
rs556123862 2976 dbSNP
rs901227230 2980 dbSNP
rs1315004229 2985 dbSNP
rs1460600020 2995 dbSNP
rs576488779 3006 dbSNP
rs1354026744 3008 dbSNP
rs904763638 3010 dbSNP
rs1430269790 3014 dbSNP
rs1404648564 3024 dbSNP
rs999629026 3030 dbSNP
rs1187017360 3039 dbSNP
rs76487993 3043 dbSNP
rs868715304 3046 dbSNP
rs760191699 3049 dbSNP
rs956329764 3050 dbSNP
rs1251402038 3051 dbSNP
rs1010815728 3058 dbSNP
rs1223598966 3059 dbSNP
rs1205954335 3062 dbSNP
rs1320686941 3067 dbSNP
rs753162819 3070 dbSNP
rs1291968576 3074 dbSNP
rs1305252390 3081 dbSNP
rs1024012703 3086 dbSNP
rs969230765 3092 dbSNP
rs770414577 3093 dbSNP
rs1389913250 3094 dbSNP
rs1263046669 3110 dbSNP
rs555727260 3113 dbSNP
rs1395992294 3122 dbSNP
rs1298860450 3124 dbSNP
rs982384728 3131 dbSNP
rs1321581800 3135 dbSNP
rs1392272940 3142 dbSNP
rs965628395 3143 dbSNP
rs1034829869 3144 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ccguuuuuggcguUAAUGAAAa 5'
                       |||||||| 
Target 5' ------------cAUUACUUUu 3'
1 - 10
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000296666.8 | 3UTR | CAUUACUUUUUUAACUUUGUGCCAUUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
184 hsa-miR-548am-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057132 DDIT4 DNA damage inducible transcript 4 2 4
MIRT063379 ETNK1 ethanolamine kinase 1 2 2
MIRT072501 RAB8B RAB8B, member RAS oncogene family 2 2
MIRT082193 ACTN4 actinin alpha 4 2 6
MIRT083043 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT085196 SLC5A3 solute carrier family 5 member 3 2 4
MIRT088913 FOXN2 forkhead box N2 2 4
MIRT089506 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 6
MIRT092047 ABHD5 abhydrolase domain containing 5 2 2
MIRT094692 FEM1C fem-1 homolog C 2 2
MIRT095403 UBE2D2 ubiquitin conjugating enzyme E2 D2 2 2
MIRT096509 BRIX1 BRX1, biogenesis of ribosomes 2 2
MIRT101303 FAM135A family with sequence similarity 135 member A 2 2
MIRT103366 CBX3 chromobox 3 2 2
MIRT103883 FOXK1 forkhead box K1 2 2
MIRT104343 CLDN12 claudin 12 2 2
MIRT104508 PEG10 paternally expressed 10 2 6
MIRT111808 MPZL1 myelin protein zero like 1 2 2
MIRT177246 BMI1 BMI1 proto-oncogene, polycomb ring finger 2 2
MIRT177281 COMMD3-BMI1 COMMD3-BMI1 readthrough 2 2
MIRT177633 UBE2D1 ubiquitin conjugating enzyme E2 D1 2 6
MIRT178049 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT179109 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 2 6
MIRT179594 CAPZA1 capping actin protein of muscle Z-line alpha subunit 1 2 6
MIRT195307 LEPROT leptin receptor overlapping transcript 2 2
MIRT203152 BACH1 BTB domain and CNC homolog 1 2 2
MIRT208437 ZBTB38 zinc finger and BTB domain containing 38 2 2
MIRT214585 SMAD5 SMAD family member 5 2 4
MIRT216112 IL6ST interleukin 6 signal transducer 2 2
MIRT216363 CCNB1 cyclin B1 2 4
MIRT220059 MDFIC MyoD family inhibitor domain containing 2 2
MIRT226737 ANP32B acidic nuclear phosphoprotein 32 family member B 2 4
MIRT227706 TBC1D13 TBC1 domain family member 13 2 2
MIRT230079 SH3BGRL SH3 domain binding glutamate rich protein like 2 2
MIRT248644 HMGN2 high mobility group nucleosomal binding domain 2 2 4
MIRT254799 XRCC6 X-ray repair cross complementing 6 2 6
MIRT264388 YAP1 Yes associated protein 1 2 2
MIRT266982 LRRC55 leucine rich repeat containing 55 2 4
MIRT273957 SPRYD4 SPRY domain containing 4 2 2
MIRT281809 MAP2K1 mitogen-activated protein kinase kinase 1 2 2
MIRT293262 DR1 down-regulator of transcription 1 2 2
MIRT297105 RGPD4 RANBP2-like and GRIP domain containing 4 2 2
MIRT308178 PDE12 phosphodiesterase 12 2 2
MIRT309022 USP53 ubiquitin specific peptidase 53 2 2
MIRT311477 PRRC1 proline rich coiled-coil 1 2 2
MIRT312595 G3BP1 G3BP stress granule assembly factor 1 2 4
MIRT328137 ZNF711 zinc finger protein 711 2 2
MIRT329321 FAM53C family with sequence similarity 53 member C 2 2
MIRT334649 NEK7 NIMA related kinase 7 2 2
MIRT340680 THRAP3 thyroid hormone receptor associated protein 3 2 2
MIRT378865 ITGB8 integrin subunit beta 8 2 2
MIRT395798 SPCS3 signal peptidase complex subunit 3 2 2
MIRT405648 WBP4 WW domain binding protein 4 2 4
MIRT408294 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT442112 ZNRF2 zinc and ring finger 2 2 8
MIRT442855 GTF2H5 general transcription factor IIH subunit 5 2 2
MIRT443131 VLDLR very low density lipoprotein receptor 2 2
MIRT443162 ZDHHC21 zinc finger DHHC-type containing 21 2 2
MIRT443313 PRPS1L1 phosphoribosyl pyrophosphate synthetase 1-like 1 2 2
MIRT445095 ZNF207 zinc finger protein 207 2 2
MIRT445399 PTCHD1 patched domain containing 1 2 4
MIRT447085 MCC mutated in colorectal cancers 2 2
MIRT447315 ZNF562 zinc finger protein 562 2 2
MIRT447528 MRPS5 mitochondrial ribosomal protein S5 2 2
MIRT449526 TM6SF1 transmembrane 6 superfamily member 1 2 2
MIRT449917 C11orf34 placenta expressed transcript 1 1 2
MIRT450566 SHFM1 SEM1, 26S proteasome complex subunit 2 2
MIRT450734 PVRL3 nectin cell adhesion molecule 3 2 2
MIRT454938 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 12
MIRT455907 KIF2C kinesin family member 2C 2 2
MIRT463747 YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon 2 8
MIRT471197 PHB2 prohibitin 2 2 2
MIRT472779 MTMR6 myotubularin related protein 6 2 8
MIRT474472 KLHL11 kelch like family member 11 2 8
MIRT476000 GTPBP2 GTP binding protein 2 2 2
MIRT482291 AGO2 argonaute 2, RISC catalytic component 2 4
MIRT485873 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT486207 ERH ERH, mRNA splicing and mitosis factor 2 4
MIRT488624 FAM3C family with sequence similarity 3 member C 2 6
MIRT489999 DDB1 damage specific DNA binding protein 1 2 2
MIRT493491 IPMK inositol polyphosphate multikinase 2 2
MIRT494295 CEP120 centrosomal protein 120 2 2
MIRT498007 ZBTB20 zinc finger and BTB domain containing 20 2 2
MIRT498488 PTBP2 polypyrimidine tract binding protein 2 2 10
MIRT498575 TMEM30B transmembrane protein 30B 2 2
MIRT499882 SVOP SV2 related protein 2 10
MIRT500235 INHBA inhibin beta A subunit 2 10
MIRT500709 TRIM37 tripartite motif containing 37 2 2
MIRT501003 SPPL2A signal peptide peptidase like 2A 2 4
MIRT501038 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502751 CLIP1 CAP-Gly domain containing linker protein 1 2 8
MIRT502813 CELSR3 cadherin EGF LAG seven-pass G-type receptor 3 2 6
MIRT502903 CDK4 cyclin dependent kinase 4 2 8
MIRT503498 ZNF154 zinc finger protein 154 2 6
MIRT503732 GRM5 glutamate metabotropic receptor 5 2 2
MIRT505152 YOD1 YOD1 deubiquitinase 2 2
MIRT505817 RSBN1 round spermatid basic protein 1 2 8
MIRT505856 POLR1B RNA polymerase I subunit B 2 4
MIRT509299 NPM3 nucleophosmin/nucleoplasmin 3 2 6
MIRT516844 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT520534 TRA2B transformer 2 beta homolog 2 2
MIRT520738 TM9SF3 transmembrane 9 superfamily member 3 2 6
MIRT525418 SHISA9 shisa family member 9 2 4
MIRT525882 ARL13B ADP ribosylation factor like GTPase 13B 2 2
MIRT526028 RBM4B RNA binding motif protein 4B 2 2
MIRT526099 TMEM41B transmembrane protein 41B 2 2
MIRT527946 FRY FRY microtubule binding protein 2 2
MIRT528833 RAB32 RAB32, member RAS oncogene family 2 2
MIRT531077 SLC9A4 solute carrier family 9 member A4 2 4
MIRT535510 PANX1 pannexin 1 2 2
MIRT536697 IKZF5 IKAROS family zinc finger 5 2 2
MIRT536850 HMBOX1 homeobox containing 1 2 2
MIRT537217 GDE1 glycerophosphodiester phosphodiesterase 1 2 4
MIRT537849 EFNA5 ephrin A5 2 2
MIRT538360 CSE1L chromosome segregation 1 like 2 4
MIRT541257 GPC4 glypican 4 2 2
MIRT543250 PEX7 peroxisomal biogenesis factor 7 2 2
MIRT543465 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT543726 XKR9 XK related 9 2 2
MIRT543922 ESYT1 extended synaptotagmin 1 2 2
MIRT544014 KLRC3 killer cell lectin like receptor C3 2 2
MIRT544085 METTL8 methyltransferase like 8 2 2
MIRT544202 ANGPTL3 angiopoietin like 3 2 2
MIRT544823 ACSM2B acyl-CoA synthetase medium chain family member 2B 2 2
MIRT545061 PRELID1 PRELI domain containing 1 2 2
MIRT545229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT545304 SPC25 SPC25, NDC80 kinetochore complex component 2 2
MIRT545565 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT546512 SIK1 salt inducible kinase 1 2 2
MIRT546929 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 2
MIRT547690 KPNA1 karyopherin subunit alpha 1 2 4
MIRT547783 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT548702 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 2
MIRT548916 CHEK2 checkpoint kinase 2 2 4
MIRT549972 RPL7L1 ribosomal protein L7 like 1 2 4
MIRT550504 TMEM241 transmembrane protein 241 2 2
MIRT551064 MKLN1 muskelin 1 2 2
MIRT552826 XIAP X-linked inhibitor of apoptosis 2 4
MIRT553160 UBE2H ubiquitin conjugating enzyme E2 H 2 2
MIRT553845 SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein 2 2
MIRT554273 SIX4 SIX homeobox 4 2 2
MIRT555796 PCMTD1 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 2 2
MIRT556333 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT556514 LIPA lipase A, lysosomal acid type 2 2
MIRT556708 KLHL28 kelch like family member 28 2 2
MIRT556767 KLF7 Kruppel like factor 7 2 2
MIRT557005 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557161 HOXA13 homeobox A13 2 2
MIRT557502 GPR27 G protein-coupled receptor 27 2 4
MIRT558117 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 2 2
MIRT559359 ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) 2 2
MIRT560350 ZWINT ZW10 interacting kinetochore protein 2 2
MIRT561314 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT561898 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 2
MIRT561942 MFSD9 major facilitator superfamily domain containing 9 2 2
MIRT562950 TNIP2 TNFAIP3 interacting protein 2 2 2
MIRT563306 BBS10 Bardet-Biedl syndrome 10 2 2
MIRT563420 KIF3A kinesin family member 3A 2 2
MIRT563577 KIAA1586 KIAA1586 2 2
MIRT565891 NHS NHS actin remodeling regulator 2 2
MIRT566096 RCC2 regulator of chromosome condensation 2 2 2
MIRT566411 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT567274 HSP90AA1 heat shock protein 90 alpha family class A member 1 2 2
MIRT571483 CCDC80 coiled-coil domain containing 80 2 2
MIRT572954 VDAC2 voltage dependent anion channel 2 2 2
MIRT573643 ZNF724P zinc finger protein 724 2 2
MIRT573732 KHSRP KH-type splicing regulatory protein 2 2
MIRT609103 SMIM15 small integral membrane protein 15 2 6
MIRT617951 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT618394 PRKG2 protein kinase, cGMP-dependent, type II 2 2
MIRT619642 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 2 2
MIRT623470 KDM5A lysine demethylase 5A 2 2
MIRT629160 CTCFL CCCTC-binding factor like 2 2
MIRT638536 LYRM2 LYR motif containing 2 2 2
MIRT649498 CLDN16 claudin 16 2 2
MIRT683163 MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 2 2
MIRT691675 SLC43A3 solute carrier family 43 member 3 2 2
MIRT693216 MKI67 marker of proliferation Ki-67 2 2
MIRT695349 AQP3 aquaporin 3 (Gill blood group) 2 2
MIRT701038 PCGF5 polycomb group ring finger 5 2 2
MIRT708768 RYBP RING1 and YY1 binding protein 2 2
MIRT717573 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT719301 SETD7 SET domain containing lysine methyltransferase 7 2 2
MIRT725187 SDAD1 SDA1 domain containing 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-548am-5p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549, HCC827)
hsa-miR-548am-5p Gefitinib 123631 NSC715055 approved resistant High Non-Small Cell Lung Cancer cell line (A549, HCC827)
hsa-miR-548am-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-548am-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)

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