miRTarBase - #MIRT312967


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pre-miRNA Information
pre-miRNA hsa-mir-629   
Genomic Coordinates chr15: 70079372 - 70079468
Synonyms MIRN629, hsa-mir-629, MIR629
Description Homo sapiens miR-629 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-629-3p
Sequence 61| GUUCUCCCAACGUAAGCCCAGC |82
Evidence Experimental
Experiments SAGE
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN26582616 16 COSMIC
COSN26958009 18 COSMIC
COSN8407437 22 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1242457085 1 dbSNP
rs1344122972 2 dbSNP
rs557636399 8 dbSNP
rs1233555233 9 dbSNP
rs377379255 10 dbSNP
rs756998503 11 dbSNP
rs753617436 12 dbSNP
rs1455005717 13 dbSNP
rs1363921181 14 dbSNP
rs373092208 19 dbSNP
rs755974356 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Biomarker Information
Biomarker ID Name Type Discovered From Mode Level Source Testing Methods
BKD83G miR-629 Safety Biomarker (SAF) Clinical/Experimental Data Expression Decrease Blood TaqMan OpenArray panels
Gene Information
Gene Symbol STC2   
Synonyms STC-2, STCRP
Description stanniocalcin 2
Transcript NM_003714   
Expression
Putative miRNA Targets on STC2
3'UTR of STC2
(miRNA target sites are highlighted)		 
>STC2|NM_003714|3'UTR
   1 AATGAAAGGCCTGGCCACGAAATCTTTCCTCCACGCCGTCCATTTTCTTATCTATGGACATTCCAAAACATTTACCATTA
  81 GAGAGGGGGGATGTCACACGCAGGATTCTGTGGGGACTGTGGACTTCATCGAGGTGTGTGTTCGCGGAACGGACAGGTGA
 161 GATGGAGACCCCTGGGGCCGTGGGGTCTCAGGGGTGCCTGGTGAATTCTGCACTTACACGTACTCAAGGGAGCGCGCCCG
 241 CGTTATCCTCGTACCTTTGTCTTCTTTCCATCTGTGGAGTCAGTGGGTGTCGGCCGCTCTGTTGTGGGGGAGGTGAACCA
 321 GGGAGGGGCAGGGCAAGGCAGGGCCCCCAGAGCTGGGCCACACAGTGGGTGCTGGGCCTCGCCCCGAAGCTTCTGGTGCA
 401 GCAGCCTCTGGTGCTGTCTCCGCGGAAGTCAGGGCGGCTGGATTCCAGGACAGGAGTGAATGTAAAAATAAATATCGCTT
 481 AGAATGCAGGAGAAGGGTGGAGAGGAGGCAGGGGCCGAGGGGGTGCTTGGTGCCAAACTGAAATTCAGTTTCTTGTGTGG
 561 GGCCTTGCGGTTCAGAGCTCTTGGCGAGGGTGGAGGGAGGAGTGTCATTTCTATGTGTAATTTCTGAGCCATTGTACTGT
 641 CTGGGCTGGGGGGGACACTGTCCAAGGGAGTGGCCCCTATGAGTTTATATTTTAACCACTGCTTCAAATCTCGATTTCAC
 721 TTTTTTTATTTATCCAGTTATATCTACATATCTGTCATCTAAATAAATGGCTTTCAAACAAAGCAACTGGGTCATTAAAA
 801 CCAGCTCAAAGGGGGTTTAAAAAAAAAAAACCAGCCCATCCTTTGAGGCTGATTTTTCTTTTTTTTAAGTTCTATTTTAA
 881 AAGCTATCAAACAGCGACATAGCCATACATCTGACTGCCTGACATGGACTCCTGCCCACTTGGGGGAAACCTTATACCCA
 961 GAGGAAAATACACACCTGGGGAGTACATTTGACAAATTTCCCTTAGGATTTCGTTATCTCACCTTGACCCTCAGCCAAGA
1041 TTGGTAAAGCTGCGTCCTGGCGATTCCAGGAGACCCAGCTGGAAACCTGGCTTCTCCATGTGAGGGGATGGGAAAGGAAA
1121 GAAGAGAATGAAGACTACTTAGTAATTCCCATCAGGAAATGCTGACCTTTTACATAAAATCAAGGAGACTGCTGAAAATC
1201 TCTAAGGGACAGGATTTTCCAGATCCTAATTGGAAATTTAGCAATAAGGAGAGGAGTCCAAGGGGACAAATAAAGGCAGA
1281 GAGAAGAGACAGAACTAAAAATACGAGGAAAGGAGAGTGAGGATTTTCATTAAAAGTCTCAGCAGTGGGTTTCTTGGGTT
1361 ATTTAAAACATCACCTAAATAGGCCTTTTCTTCCTAATTGGCCATCAAATTAAAGCCTATCCTTTCTCAAGCAGGAGCTG
1441 GTATTGTAGGGAGTGGCCGGGTATTCTGGGCTGGGCTCTTCTGGAGTAGGGGGTCAGCAAACATTGTCTGCAAAGGGCCA
1521 GATACTGAATCCAGTACTTTCAGTTTGGCGAGCCGTGAGGTCTCTGTCGAAACTACTCAACTCTGCCGTCCTAGCACAAA
1601 AGCAGCCATAGACAACACACAAACGAGAGGGCTTGGCTCCCTTCCAGGAAGATTTATTTAACAGGCTCCCAGCTGAATTT
1681 CACTCACAGGACACAGTTTACTGATCTCTGTTCTAGTGAGTGGGTCAAAAAGCATATGCATCCTTATCCGTCAACTCATC
1761 AGCTCTTCCTCAAGGCAACCTGAGGCCAGACACCAAGAAACCAAGCGTATCTGCTCTAAAATGACTTGTTCCTGGGGAAT
1841 GCCTTCAACCAAAACACAGCTAGTATTTCTATGCCCCAAATCCAATCCCAGTCTTTCATGATCCATGCCGGCGGTTGGGT
1921 GGGGAGGGGAATCATTGGTTGGGGGAAGGGAGGAAACCCCACCTCCAGCCCCCGCCACCGGGCTCCCTGGGCACCCAGCA
2001 AGATCTGGGGCTGCAGAGAACAGAAGAGCTGGTGCACTTAATCCAGCTCTGCCCTTGGGGGGAGGAGGACCTGTGTGTCA
2081 GGCTCTGCCATGGGAACGAGTGTAAACCGTGGCTGTCTCCTGCAGTGAGCCACCGCGGCAGGCACGTTGACTGTTTTACT
2161 GACATCACTCAAAAGCTAAAGCAATAACATTCTCCTGCGTTGCTGAGTCAGCTGTTCATTTGTCCGCCAGCTCCTGGACT
2241 GGATGTGTGAAAGGCATCACATTTCCATTTTCCTCCGTGTAAATGTTTTATGTGTTCGCCTACTGATCCCATTCGTTGCT
2321 TCTATTGTAAATATTTGTCATTTGTATTTATTATCTCTGTGTTTTCCCCCTAAGGCATAAAATGGTTTACTGTGTTCATT
2401 TGAACCCATTTACTGATCTCTGTTGTATATTTTTCATGCCACTGCTTTGTTTTCTCCTCAGAAGTCGGGTAGATAGCATT
2481 TCTATCCCATCCCTCACGTTATTGGAAGCATGCAACAGTATTTATTGCTCAGGGTCTTCTGCTTAAAACTGAGGAAGGTC
2561 CACATTCCTGCAAGCATTGATTGAGACATTTGCACAATCTAAAATGTAAGCAAAGTAGTCATTAAAAATACACCCTCTAC
2641 TTGGGCTTTATACTGCATACAAATTTACTCATGAGCCTTCCTTTGAGGAAGGATGTGGATCTCCAAATAAAGATTTAGTG
2721 TTTATTTTGAGCTCTGCATCTTAACAAGATGATCTGAACACCTCTCCTTTGTATCAATAAATAGCCCTGTTATTCTGAAG
2801 TGAGAGGACCAAGTATAGTAAAATGCTGACATCTAAAACTAAATAAATAGAAAACACCAGGCCAGAACTATAGTCATACT
2881 CACACAAAGGGAGAAATTTAAACTCGAACCAAGCAAAAGGCTTCACGGAAATAGCATGGAAAAACAATGCTTCCAGTGGC
2961 CACTTCCTAAGGAGGAACAACCCCGTCTGATCTCAGAATTGGCACCACGTGAGCTTGCTAAGTGATAATATCTGTTTCTA
3041 CTACGGATTTAGGCAACAGGACCTGTACATTGTCACATTGCATTATTTTTCTTCAAGCGTTAATAAAAGTTTTAAATAAA
3121 TGGCAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cgaCCC---GAAUGCAACCCUCUUg 5'
             |||   | |  ||||||:||| 
Target 5' gagGGGAATCATTGGTTGGGGGAAg 3'
 1924 - 1948 143.00 -18.60
2 
miRNA  3' cgACCCGA--AUG---CAACCCUCUUg 5'
            ||| ||  |:|    |||||:||| 
Target 5' caTGGACTCCTGCCCACTTGGGGGAAa 3'
 923 - 949 142.00 -15.10
3 
miRNA  3' cgacccgaaUGCAACCCUCUUg 5'
                   ||   ||||||| 
Target 5' catactcacACAAAGGGAGAAa 3'
 2875 - 2896 141.00 -10.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31610512 3 COSMIC
COSN14157092 18 COSMIC
COSN30179275 18 COSMIC
COSN30480807 19 COSMIC
COSN14157091 34 COSMIC
COSN30450362 41 COSMIC
COSN31593883 77 COSMIC
COSN30453187 87 COSMIC
COSN30487387 89 COSMIC
COSN26997219 99 COSMIC
COSN30458120 103 COSMIC
COSN31575823 126 COSMIC
COSN26997218 141 COSMIC
COSN30121966 144 COSMIC
COSN16037726 145 COSMIC
COSN510961 150 COSMIC
COSN30535974 151 COSMIC
COSN31603042 165 COSMIC
COSN24301371 185 COSMIC
COSN1312057 329 COSMIC
COSN31523050 357 COSMIC
COSN22761910 385 COSMIC
COSN26563906 515 COSMIC
COSN30543568 563 COSMIC
COSN25854833 597 COSMIC
COSN28632414 604 COSMIC
COSN8492341 604 COSMIC
COSN31545069 611 COSMIC
COSN28377186 647 COSMIC
COSN26633574 658 COSMIC
COSN31828206 721 COSMIC
COSN28201563 754 COSMIC
COSN22876997 954 COSMIC
COSN22995909 1569 COSMIC
COSN9933833 1632 COSMIC
COSN2471762 1816 COSMIC
COSN21360106 1936 COSMIC
COSN24537733 1943 COSMIC
COSN22884446 2216 COSMIC
COSN16242412 2259 COSMIC
COSN27939110 2436 COSMIC
COSN8209004 2476 COSMIC
COSN2510644 2759 COSMIC
COSN26628168 3065 COSMIC
COSN15663029 3076 COSMIC
COSN22814272 3101 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs201211199 1 dbSNP
rs202203608 5 dbSNP
rs774339789 11 dbSNP
rs770405032 13 dbSNP
rs1401167631 16 dbSNP
rs748809585 18 dbSNP
rs1442251687 19 dbSNP
rs777437742 21 dbSNP
rs755791430 23 dbSNP
rs747747040 28 dbSNP
rs1341509971 29 dbSNP
rs1382487037 30 dbSNP
rs781543591 31 dbSNP
rs755368543 34 dbSNP
rs752068244 35 dbSNP
rs1296743704 36 dbSNP
rs946032869 37 dbSNP
rs766892241 38 dbSNP
rs1019221233 39 dbSNP
rs758448239 42 dbSNP
rs750548205 46 dbSNP
rs1406759578 49 dbSNP
rs769326646 50 dbSNP
rs1285101806 55 dbSNP
rs1486356207 66 dbSNP
rs558813520 77 dbSNP
rs879016804 86 dbSNP
rs1201771281 91 dbSNP
rs1265474752 91 dbSNP
rs1278158208 91 dbSNP
rs1396965815 93 dbSNP
rs990546633 99 dbSNP
rs1291709265 100 dbSNP
rs1158551814 107 dbSNP
rs936293215 108 dbSNP
rs538701026 129 dbSNP
rs569993864 130 dbSNP
rs1290276193 131 dbSNP
rs966156304 134 dbSNP
rs549866127 135 dbSNP
rs1004857507 139 dbSNP
rs983125386 143 dbSNP
rs745334225 150 dbSNP
rs886995126 151 dbSNP
rs1308391758 152 dbSNP
rs112878564 168 dbSNP
rs780725452 170 dbSNP
rs536320108 171 dbSNP
rs1263906800 175 dbSNP
rs567536873 176 dbSNP
rs950469534 179 dbSNP
rs1027357861 180 dbSNP
rs915741391 181 dbSNP
rs1255019933 186 dbSNP
rs994899374 194 dbSNP
rs895087941 196 dbSNP
rs1033991604 197 dbSNP
rs1381407612 213 dbSNP
rs1421251093 217 dbSNP
rs935726503 217 dbSNP
rs188186746 219 dbSNP
rs1457136324 220 dbSNP
rs1326127408 230 dbSNP
rs1396070766 232 dbSNP
rs527881531 234 dbSNP
rs1308463799 235 dbSNP
rs565481069 236 dbSNP
rs17075790 240 dbSNP
rs748530795 241 dbSNP
rs143534668 250 dbSNP
rs1234179318 251 dbSNP
rs1398341302 255 dbSNP
rs1456522294 268 dbSNP
rs1054483286 270 dbSNP
rs935975090 274 dbSNP
rs953791656 277 dbSNP
rs1481938973 279 dbSNP
rs369834323 281 dbSNP
rs1413575710 285 dbSNP
rs1461670160 286 dbSNP
rs1371619295 287 dbSNP
rs1165223555 289 dbSNP
rs922218720 290 dbSNP
rs1178605669 295 dbSNP
rs995417535 296 dbSNP
rs1354600908 298 dbSNP
rs1444355080 299 dbSNP
rs1480807888 305 dbSNP
rs371161766 306 dbSNP
rs944880165 307 dbSNP
rs1004949128 310 dbSNP
rs1218230667 311 dbSNP
rs906523704 314 dbSNP
rs1024969481 318 dbSNP
rs1014140448 321 dbSNP
rs1208678502 333 dbSNP
rs1440095107 343 dbSNP
rs1251681639 344 dbSNP
rs1195645370 346 dbSNP
rs543556293 358 dbSNP
rs894386725 361 dbSNP
rs1261475123 372 dbSNP
rs1476670077 375 dbSNP
rs912102734 378 dbSNP
rs1419665179 380 dbSNP
rs935848153 381 dbSNP
rs529847188 385 dbSNP
rs1224766728 386 dbSNP
rs950500095 408 dbSNP
rs560946407 414 dbSNP
rs1314552349 415 dbSNP
rs1041469252 420 dbSNP
rs536224700 421 dbSNP
rs565450893 422 dbSNP
rs1364198256 423 dbSNP
rs541276187 424 dbSNP
rs1349319583 427 dbSNP
rs779325205 433 dbSNP
rs1213630071 435 dbSNP
rs959263789 436 dbSNP
rs1337539925 437 dbSNP
rs1192068341 449 dbSNP
rs1242292091 451 dbSNP
rs1476118787 453 dbSNP
rs1307943592 455 dbSNP
rs1189013670 456 dbSNP
rs987549845 457 dbSNP
rs1435315556 458 dbSNP
rs1175400907 461 dbSNP
rs1358422619 462 dbSNP
rs1319243120 465 dbSNP
rs1033603696 467 dbSNP
rs572198913 468 dbSNP
rs1390619653 473 dbSNP
rs1003499690 481 dbSNP
rs1274398665 482 dbSNP
rs970624841 487 dbSNP
rs1020826864 488 dbSNP
rs558589182 491 dbSNP
rs932212498 496 dbSNP
rs1353471168 500 dbSNP
rs1394519790 500 dbSNP
rs891894595 507 dbSNP
rs1470317877 512 dbSNP
rs1428645295 515 dbSNP
rs755579552 517 dbSNP
rs1251877237 523 dbSNP
rs1454300294 530 dbSNP
rs754424637 533 dbSNP
rs146704729 546 dbSNP
rs879758886 555 dbSNP
rs143246171 562 dbSNP
rs1039009682 568 dbSNP
rs944996135 569 dbSNP
rs556105465 574 dbSNP
rs536231101 575 dbSNP
rs1443133938 577 dbSNP
rs567465705 580 dbSNP
rs1376729963 585 dbSNP
rs766939151 586 dbSNP
rs1240366173 594 dbSNP
rs1024894417 596 dbSNP
rs920371371 601 dbSNP
rs1226285671 611 dbSNP
rs973522236 613 dbSNP
rs959149005 615 dbSNP
rs926314686 634 dbSNP
rs553838984 637 dbSNP
rs1468548175 639 dbSNP
rs1235922349 640 dbSNP
rs970654408 645 dbSNP
rs1214940748 647 dbSNP
rs1034670056 648 dbSNP
rs534138992 650 dbSNP
rs1461524605 654 dbSNP
rs1365364967 655 dbSNP
rs1471666257 662 dbSNP
rs904355586 674 dbSNP
rs1418778048 676 dbSNP
rs1041607754 679 dbSNP
rs1261965472 686 dbSNP
rs1168707121 703 dbSNP
rs1395830439 708 dbSNP
rs571764274 712 dbSNP
rs551806009 713 dbSNP
rs767698392 714 dbSNP
rs890211462 719 dbSNP
rs1051412821 720 dbSNP
rs931653019 724 dbSNP
rs921644178 727 dbSNP
rs1033102281 732 dbSNP
rs1374417246 736 dbSNP
rs1252519183 737 dbSNP
rs1440501529 745 dbSNP
rs974042967 752 dbSNP
rs1000729018 784 dbSNP
rs900578474 786 dbSNP
rs1316961133 787 dbSNP
rs1257965886 792 dbSNP
rs1476345111 795 dbSNP
rs1453648743 804 dbSNP
rs531995657 806 dbSNP
rs1008836202 808 dbSNP
rs908040672 810 dbSNP
rs1402527648 812 dbSNP
rs1462515807 814 dbSNP
rs1386258190 815 dbSNP
rs1400610037 816 dbSNP
rs377477137 818 dbSNP
rs199672520 830 dbSNP
rs1297460424 831 dbSNP
rs34875079 831 dbSNP
rs529713044 831 dbSNP
rs796072792 831 dbSNP
rs1469096412 832 dbSNP
rs929493417 832 dbSNP
rs959617987 833 dbSNP
rs1032384189 836 dbSNP
rs140848272 838 dbSNP
rs1037864571 840 dbSNP
rs146419510 843 dbSNP
rs1261222893 844 dbSNP
rs926341085 860 dbSNP
rs1010090944 867 dbSNP
rs1375994884 867 dbSNP
rs778313609 867 dbSNP
rs890180099 867 dbSNP
rs1174789762 879 dbSNP
rs1418210042 895 dbSNP
rs527498214 896 dbSNP
rs1383719652 898 dbSNP
rs1448258913 902 dbSNP
rs1361550101 913 dbSNP
rs770419742 917 dbSNP
rs565062899 921 dbSNP
rs900161700 923 dbSNP
rs1304020054 924 dbSNP
rs981790270 925 dbSNP
rs113160827 939 dbSNP
rs111496515 940 dbSNP
rs796924023 941 dbSNP
rs575967733 942 dbSNP
rs1207088557 943 dbSNP
rs1293655727 948 dbSNP
rs774061024 963 dbSNP
rs116368798 970 dbSNP
rs1194837772 971 dbSNP
rs763846539 981 dbSNP
rs1032625633 986 dbSNP
rs1416743583 993 dbSNP
rs1158907968 1004 dbSNP
rs975262856 1009 dbSNP
rs1364730660 1012 dbSNP
rs116122247 1013 dbSNP
rs1017621714 1020 dbSNP
rs1439439635 1027 dbSNP
rs1008867148 1033 dbSNP
rs959519039 1039 dbSNP
rs1373178105 1040 dbSNP
rs890422220 1053 dbSNP
rs775428770 1054 dbSNP
rs1306074477 1055 dbSNP
rs769661328 1061 dbSNP
rs1317767709 1079 dbSNP
rs1418405498 1084 dbSNP
rs749245145 1093 dbSNP
rs994189420 1098 dbSNP
rs899400646 1100 dbSNP
rs4868255 1101 dbSNP
rs573657470 1110 dbSNP
rs1164546692 1111 dbSNP
rs938167571 1115 dbSNP
rs1421213223 1116 dbSNP
rs904954760 1121 dbSNP
rs1160851367 1130 dbSNP
rs1020226276 1138 dbSNP
rs17676033 1156 dbSNP
rs1165101929 1172 dbSNP
rs954680817 1173 dbSNP
rs1395994860 1176 dbSNP
rs1439995959 1182 dbSNP
rs1297488604 1183 dbSNP
rs949033786 1187 dbSNP
rs534267520 1188 dbSNP
rs148763144 1199 dbSNP
rs1161119755 1202 dbSNP
rs996319607 1203 dbSNP
rs1234122239 1204 dbSNP
rs1275165307 1210 dbSNP
rs900256103 1233 dbSNP
rs1204483232 1235 dbSNP
rs1037752025 1238 dbSNP
rs776203809 1244 dbSNP
rs73804145 1249 dbSNP
rs1191918294 1250 dbSNP
rs1474700258 1256 dbSNP
rs987819062 1257 dbSNP
rs1419418329 1264 dbSNP
rs1270966827 1265 dbSNP
rs1222900750 1266 dbSNP
rs1358487365 1277 dbSNP
rs558362571 1285 dbSNP
rs1287521857 1286 dbSNP
rs1135097 1290 dbSNP
rs1407672521 1291 dbSNP
rs1169661356 1295 dbSNP
rs538030509 1295 dbSNP
rs770550351 1297 dbSNP
rs569620175 1304 dbSNP
rs975671954 1305 dbSNP
rs1415673664 1312 dbSNP
rs1269662685 1332 dbSNP
rs1295294311 1333 dbSNP
rs1055307108 1338 dbSNP
rs74992533 1345 dbSNP
rs1017651412 1358 dbSNP
rs1273794226 1377 dbSNP
rs987555379 1391 dbSNP
rs925408569 1392 dbSNP
rs1304313587 1398 dbSNP
rs1404668767 1404 dbSNP
rs1238778034 1416 dbSNP
rs752513616 1423 dbSNP
rs529726142 1432 dbSNP
rs979398220 1440 dbSNP
rs1419602425 1441 dbSNP
rs567226887 1444 dbSNP
rs993494103 1447 dbSNP
rs1171654016 1455 dbSNP
rs777524951 1457 dbSNP
rs1419802760 1458 dbSNP
rs139938653 1459 dbSNP
rs988721338 1460 dbSNP
rs1343716004 1468 dbSNP
rs1430276697 1469 dbSNP
rs1270888400 1479 dbSNP
rs1217878799 1481 dbSNP
rs191266094 1485 dbSNP
rs954681985 1485 dbSNP
rs974604162 1494 dbSNP
rs771211001 1498 dbSNP
rs1002790283 1503 dbSNP
rs905320036 1505 dbSNP
rs1282579171 1506 dbSNP
rs564815291 1507 dbSNP
rs527684983 1519 dbSNP
rs1242240568 1544 dbSNP
rs1465818384 1545 dbSNP
rs1191698962 1547 dbSNP
rs1013377799 1548 dbSNP
rs896822713 1549 dbSNP
rs749603364 1550 dbSNP
rs531392067 1553 dbSNP
rs936327563 1554 dbSNP
rs370360827 1555 dbSNP
rs1347070173 1556 dbSNP
rs1206437394 1557 dbSNP
rs1039590063 1559 dbSNP
rs942539827 1560 dbSNP
rs867411075 1562 dbSNP
rs938205267 1568 dbSNP
rs986583244 1569 dbSNP
rs1350380125 1574 dbSNP
rs150673127 1574 dbSNP
rs1284466735 1577 dbSNP
rs1422544298 1587 dbSNP
rs369676744 1588 dbSNP
rs919325629 1591 dbSNP
rs945480502 1592 dbSNP
rs1468894887 1597 dbSNP
rs1378807277 1602 dbSNP
rs1200888841 1609 dbSNP
rs913894507 1617 dbSNP
rs1469402340 1620 dbSNP
rs972486152 1624 dbSNP
rs573716581 1625 dbSNP
rs375180856 1629 dbSNP
rs1284060828 1644 dbSNP
rs1223404017 1646 dbSNP
rs1016928610 1649 dbSNP
rs1327378992 1652 dbSNP
rs1335575148 1657 dbSNP
rs1443295096 1663 dbSNP
rs1281628466 1665 dbSNP
rs933192556 1677 dbSNP
rs1002496407 1701 dbSNP
rs969623516 1702 dbSNP
rs923228257 1704 dbSNP
rs1334870215 1706 dbSNP
rs750524683 1713 dbSNP
rs142905526 1715 dbSNP
rs569110291 1723 dbSNP
rs540247451 1737 dbSNP
rs1354708831 1738 dbSNP
rs1330287824 1740 dbSNP
rs758578577 1747 dbSNP
rs1253695880 1748 dbSNP
rs964559970 1749 dbSNP
rs578067513 1750 dbSNP
rs757462061 1755 dbSNP
rs1459468175 1757 dbSNP
rs866936308 1760 dbSNP
rs750609417 1765 dbSNP
rs1166663477 1768 dbSNP
rs1407615120 1775 dbSNP
rs1016092722 1782 dbSNP
rs114918415 1785 dbSNP
rs112090748 1786 dbSNP
rs751840556 1787 dbSNP
rs1178657629 1794 dbSNP
rs912461032 1798 dbSNP
rs1355547730 1801 dbSNP
rs1246279493 1804 dbSNP
rs1267882823 1805 dbSNP
rs1338743498 1806 dbSNP
rs1470408508 1807 dbSNP
rs1276567493 1808 dbSNP
rs764251803 1809 dbSNP
rs896700716 1823 dbSNP
rs1210473339 1828 dbSNP
rs1033921152 1839 dbSNP
rs1462858084 1841 dbSNP
rs929780868 1842 dbSNP
rs904020328 1846 dbSNP
rs1043949856 1850 dbSNP
rs945406910 1851 dbSNP
rs892555291 1855 dbSNP
rs762750562 1863 dbSNP
rs775203283 1866 dbSNP
rs575870248 1871 dbSNP
rs376528799 1874 dbSNP
rs868367616 1889 dbSNP
rs933995046 1893 dbSNP
rs1229076351 1907 dbSNP
rs1299675879 1908 dbSNP
rs372684094 1909 dbSNP
rs963789720 1910 dbSNP
rs6861507 1912 dbSNP
rs974687453 1913 dbSNP
rs1484384388 1914 dbSNP
rs943317659 1917 dbSNP
rs1373024069 1920 dbSNP
rs1261159679 1923 dbSNP
rs980756630 1925 dbSNP
rs1447615904 1935 dbSNP
rs1307582928 1939 dbSNP
rs567286129 1943 dbSNP
rs909016414 1945 dbSNP
rs969654848 1947 dbSNP
rs1407917181 1969 dbSNP
rs1393749246 1970 dbSNP
rs547404327 1972 dbSNP
rs1336753292 1973 dbSNP
rs759506220 1974 dbSNP
rs533533517 1976 dbSNP
rs950448179 1978 dbSNP
rs10035377 1980 dbSNP
rs1467303873 1980 dbSNP
rs992346357 1985 dbSNP
rs956861933 1996 dbSNP
rs1322479477 1999 dbSNP
rs1031171852 2010 dbSNP
rs1000661026 2023 dbSNP
rs143109453 2024 dbSNP
rs1313694723 2031 dbSNP
rs1237201158 2033 dbSNP
rs1260294666 2034 dbSNP
rs1379424614 2047 dbSNP
rs1017962220 2049 dbSNP
rs1022429886 2051 dbSNP
rs1251211002 2052 dbSNP
rs1468457609 2056 dbSNP
rs1446659648 2057 dbSNP
rs531406085 2058 dbSNP
rs891055424 2059 dbSNP
rs1482328359 2061 dbSNP
rs188888021 2062 dbSNP
rs1391628757 2063 dbSNP
rs372775652 2063 dbSNP
rs1217091408 2065 dbSNP
rs929811981 2074 dbSNP
rs1369473261 2082 dbSNP
rs897024443 2083 dbSNP
rs909153264 2086 dbSNP
rs1316911792 2090 dbSNP
rs1199319723 2097 dbSNP
rs761812773 2098 dbSNP
rs1248639421 2101 dbSNP
rs929128079 2102 dbSNP
rs919114582 2108 dbSNP
rs1479868223 2109 dbSNP
rs562313994 2121 dbSNP
rs1394898331 2124 dbSNP
rs1472744096 2127 dbSNP
rs1183837255 2134 dbSNP
rs771779796 2135 dbSNP
rs548878422 2136 dbSNP
rs1290162772 2137 dbSNP
rs374651046 2145 dbSNP
rs529181506 2145 dbSNP
rs565923884 2145 dbSNP
rs980789278 2146 dbSNP
rs560165060 2148 dbSNP
rs948009900 2150 dbSNP
rs1156537062 2158 dbSNP
rs918180960 2164 dbSNP
rs992373146 2170 dbSNP
rs957175534 2175 dbSNP
rs1460402362 2176 dbSNP
rs980846302 2181 dbSNP
rs968264612 2191 dbSNP
rs1426347967 2192 dbSNP
rs1291623529 2193 dbSNP
rs1031197376 2195 dbSNP
rs1386036422 2196 dbSNP
rs979990447 2198 dbSNP
rs754402456 2199 dbSNP
rs1263938327 2203 dbSNP
rs540666757 2206 dbSNP
rs1187241531 2214 dbSNP
rs577950408 2225 dbSNP
rs780552853 2226 dbSNP
rs1275830214 2233 dbSNP
rs764564384 2241 dbSNP
rs1261663484 2245 dbSNP
rs761068505 2250 dbSNP
rs1206862082 2253 dbSNP
rs770251596 2254 dbSNP
rs564615687 2256 dbSNP
rs544673434 2260 dbSNP
rs1291569873 2261 dbSNP
rs1243578795 2262 dbSNP
rs1426710319 2266 dbSNP
rs1006518291 2267 dbSNP
rs575934688 2269 dbSNP
rs1390592969 2271 dbSNP
rs1431331386 2273 dbSNP
rs1038420959 2275 dbSNP
rs139081944 2276 dbSNP
rs183982266 2277 dbSNP
rs192928998 2290 dbSNP
rs1296286872 2292 dbSNP
rs1359901374 2292 dbSNP
rs1038231577 2297 dbSNP
rs941169720 2298 dbSNP
rs746353012 2303 dbSNP
rs1280060590 2306 dbSNP
rs775748816 2308 dbSNP
rs887883747 2314 dbSNP
rs1210362546 2315 dbSNP
rs899918908 2327 dbSNP
rs1484584384 2347 dbSNP
rs780973554 2355 dbSNP
rs1187858904 2363 dbSNP
rs1248501952 2366 dbSNP
rs1039685638 2368 dbSNP
rs1456570065 2369 dbSNP
rs1375015595 2371 dbSNP
rs1171143433 2372 dbSNP
rs552308936 2372 dbSNP
rs1045139858 2396 dbSNP
rs144209084 2409 dbSNP
rs1202200230 2415 dbSNP
rs1321284611 2418 dbSNP
rs1490668053 2418 dbSNP
rs1368054824 2424 dbSNP
rs369598700 2425 dbSNP
rs1439305242 2427 dbSNP
rs1303195486 2428 dbSNP
rs888477686 2430 dbSNP
rs566597838 2440 dbSNP
rs1487269772 2442 dbSNP
rs935620127 2450 dbSNP
rs1252731929 2452 dbSNP
rs1314626618 2454 dbSNP
rs1207616466 2455 dbSNP
rs1218657570 2460 dbSNP
rs546706101 2461 dbSNP
rs1316718706 2466 dbSNP
rs1466227998 2467 dbSNP
rs1191643172 2484 dbSNP
rs751535970 2486 dbSNP
rs571108479 2497 dbSNP
rs188542601 2498 dbSNP
rs1346137814 2500 dbSNP
rs1056706086 2501 dbSNP
rs1456910766 2502 dbSNP
rs1489058735 2508 dbSNP
rs113122883 2512 dbSNP
rs968587330 2524 dbSNP
rs1384864215 2532 dbSNP
rs926381876 2534 dbSNP
rs1325771800 2544 dbSNP
rs1398859361 2551 dbSNP
rs1298986246 2567 dbSNP
rs568593609 2571 dbSNP
rs752549941 2575 dbSNP
rs1370809578 2576 dbSNP
rs548792313 2577 dbSNP
rs530088484 2581 dbSNP
rs1029311546 2589 dbSNP
rs1481045076 2594 dbSNP
rs1288990739 2595 dbSNP
rs1377573482 2598 dbSNP
rs754832179 2607 dbSNP
rs956952943 2615 dbSNP
rs994222192 2617 dbSNP
rs1414318978 2618 dbSNP
rs182685483 2631 dbSNP
rs369985449 2640 dbSNP
rs1017237236 2641 dbSNP
rs1018764452 2644 dbSNP
rs1005395155 2653 dbSNP
rs1198845732 2655 dbSNP
rs905655424 2659 dbSNP
rs1457091763 2662 dbSNP
rs1255590487 2668 dbSNP
rs1370312747 2670 dbSNP
rs1044249410 2673 dbSNP
rs1205032725 2678 dbSNP
rs1351816062 2685 dbSNP
rs1230991129 2695 dbSNP
rs1345543726 2698 dbSNP
rs888443358 2703 dbSNP
rs1229939750 2707 dbSNP
rs1270652771 2731 dbSNP
rs1274215174 2733 dbSNP
rs1025631511 2738 dbSNP
rs1012372744 2741 dbSNP
rs1484805867 2744 dbSNP
rs759208293 2758 dbSNP
rs1369095386 2765 dbSNP
rs1474085636 2771 dbSNP
rs1166611227 2775 dbSNP
rs149567765 2782 dbSNP
rs896553672 2782 dbSNP
rs897738755 2783 dbSNP
rs1310229277 2785 dbSNP
rs1056496497 2786 dbSNP
rs1372098956 2791 dbSNP
rs1393900086 2795 dbSNP
rs753833899 2802 dbSNP
rs939193465 2804 dbSNP
rs1246944597 2807 dbSNP
rs924224290 2808 dbSNP
rs1044835131 2812 dbSNP
rs772437401 2813 dbSNP
rs946984616 2824 dbSNP
rs1276506675 2832 dbSNP
rs1375035670 2842 dbSNP
rs911423073 2846 dbSNP
rs914876709 2856 dbSNP
rs1338720796 2858 dbSNP
rs987808611 2863 dbSNP
rs935576086 2870 dbSNP
rs1470348294 2884 dbSNP
rs1191685100 2890 dbSNP
rs985578081 2897 dbSNP
rs955150046 2905 dbSNP
rs922860935 2906 dbSNP
rs1170923148 2914 dbSNP
rs977062203 2916 dbSNP
rs546538622 2920 dbSNP
rs1171310578 2926 dbSNP
rs533368456 2927 dbSNP
rs1364730614 2934 dbSNP
rs1178473938 2937 dbSNP
rs1317938815 2938 dbSNP
rs961301458 2942 dbSNP
rs1016854790 2947 dbSNP
rs984160708 2956 dbSNP
rs1438631882 2957 dbSNP
rs564298301 2964 dbSNP
rs952803717 2966 dbSNP
rs1005921015 2967 dbSNP
rs1347383747 2969 dbSNP
rs1203539547 2972 dbSNP
rs969955971 2973 dbSNP
rs1267552455 2977 dbSNP
rs1465789642 2984 dbSNP
rs78566432 2985 dbSNP
rs1251559251 2992 dbSNP
rs1014072483 2997 dbSNP
rs1442519729 3005 dbSNP
rs1197738687 3006 dbSNP
rs994147584 3009 dbSNP
rs897712053 3010 dbSNP
rs896584745 3013 dbSNP
rs773989982 3027 dbSNP
rs1387247741 3028 dbSNP
rs1457722488 3038 dbSNP
rs780816042 3040 dbSNP
rs1056917122 3043 dbSNP
rs1246260896 3044 dbSNP
rs999535407 3045 dbSNP
rs770411340 3049 dbSNP
rs1301716777 3050 dbSNP
rs1003503461 3054 dbSNP
rs902549770 3055 dbSNP
rs1043722431 3068 dbSNP
rs905018719 3072 dbSNP
rs115441495 3078 dbSNP
rs772843190 3098 dbSNP
rs562142562 3099 dbSNP
rs1271761289 3104 dbSNP
rs1488431585 3105 dbSNP
rs1210879089 3108 dbSNP
rs1049905154 3123 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084066. RNA binding protein: AGO2. Condition:CLIP_noemetine_SantaCruzAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' cgacccgaaugcaaCCCUCUUg 5'
                        ||||||| 
Target 5' ------------aaGGGAGAAa 3'
 		1 - 10
Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084066
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SantaCruzAb
Location of target site ENST00000265087.4 | 3UTR | AAGGGAGAAAUUUAAAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE32688 Pancreatic cancer 0.494 2.0e-3 0.476 2.9e-3 32 Click to see details
GSE19536 Breast cancer 0.276 2.7e-3 0.220 1.4e-2 100 Click to see details
GSE19783 ER- ER- breast cancer 0.301 3.5e-3 0.274 7.3e-3 79 Click to see details
GSE42095 Differentiated embryonic stem cells 0.409 2.6e-2 0.298 8.4e-2 23 Click to see details
GSE28260 Renal cortex and medulla -0.545 2.7e-2 -0.423 7.5e-2 13 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.347 4.5e-2 -0.248 1.2e-1 25 Click to see details
GSE28544 Breast cancer 0.346 4.9e-2 0.293 8.2e-2 24 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.299 7.3e-2 0.485 7.0e-3 25 Click to see details
GSE19783 ER+ ER+ breast cancer -0.331 7.7e-2 -0.364 5.7e-2 20 Click to see details
GSE38226 Liver fibrosis 0.322 7.7e-2 0.276 1.1e-1 21 Click to see details
GSE14794 Lymphoblastoid cells 0.146 8.5e-2 0.029 3.9e-1 90 Click to see details
GSE21687 Ependynoma primary tumors -0.157 1.1e-1 -0.192 6.4e-2 64 Click to see details
GSE26953 Aortic valvular endothelial cells -0.241 1.3e-1 -0.175 2.1e-1 24 Click to see details
GSE17306 Multiple myeloma -0.126 1.9e-1 -0.033 4.1e-1 49 Click to see details
GSE27834 Pluripotent stem cells -0.224 2.0e-1 -0.309 1.2e-1 16 Click to see details
GSE21032 Prostate cancer 0.091 2.1e-1 0.086 2.2e-1 83 Click to see details
GSE19350 CNS germ cell tumors -0.248 2.2e-1 -0.140 3.3e-1 12 Click to see details
GSE15076 Monocyte-derived dendritic cells -0.267 2.4e-1 -0.267 2.4e-1 9 Click to see details
GSE17498 Multiple myeloma -0.085 3.0e-1 -0.047 3.9e-1 40 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.013 4.8e-1 -0.008 4.9e-1 20 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.013 4.8e-1 -0.008 4.9e-1 20 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
HNSC -0.459 0 -0.387 0.01 42 Click to see details
UCEC -0.555 0.01 -0.488 0.02 17 Click to see details
STAD -0.409 0.02 -0.363 0.03 28 Click to see details
BRCA -0.235 0.02 -0.190 0.05 79 Click to see details
KIRC -0.186 0.07 -0.126 0.16 66 Click to see details
PRAD -0.125 0.2 -0.189 0.1 47 Click to see details
ESCA -0.202 0.28 -0.136 0.35 11 Click to see details
KIRP -0.11 0.28 -0.138 0.23 31 Click to see details
KICH -0.115 0.29 -0.198 0.17 25 Click to see details
LUSC 0.091 0.29 0.119 0.24 38 Click to see details
THCA 0.05 0.35 0.028 0.42 59 Click to see details
PAAD -0.238 0.38 -0.400 0.3 4 Click to see details
LIHC -0.037 0.4 -0.085 0.28 48 Click to see details
CESC 0.257 0.42 0.500 0.33 3 Click to see details
CHOL -0.078 0.42 0.067 0.43 9 Click to see details
BLCA -0.04 0.45 -0.169 0.28 14 Click to see details
LUAD -0.04 0.46 0.167 0.33 9 Click to see details
COAD 0.025 0.48 0.024 0.48 8 Click to see details
PCPG 1 0.5 1.000 0.5 3 Click to see details
PCPG 1 0.5 1.000 0.5 3 Click to see details
PCPG 1 0.5 1.000 0.5 3 Click to see details
191 hsa-miR-629-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT039582 DDX3X DEAD-box helicase 3, X-linked 1 1
MIRT039583 ATP5B ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 1 1
MIRT069646 BCL2L2-PABPN1 BCL2L2-PABPN1 readthrough 2 2
MIRT069658 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT078218 DYNLL2 dynein light chain LC8-type 2 2 2
MIRT082346 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 2
MIRT107793 SLC1A1 solute carrier family 1 member 1 2 2
MIRT161354 MBNL1 muscleblind like splicing regulator 1 2 2
MIRT228097 BNC2 basonuclin 2 2 2
MIRT312967 STC2 stanniocalcin 2 2 2
MIRT338797 STMN1 stathmin 1 2 2
MIRT454524 RABL2A RAB, member of RAS oncogene family like 2A 2 2
MIRT457233 RABL2B RAB, member of RAS oncogene family like 2B 2 2
MIRT461303 MRPS27 mitochondrial ribosomal protein S27 2 2
MIRT463194 ZNF148 zinc finger protein 148 2 4
MIRT477013 FAM217B family with sequence similarity 217 member B 2 2
MIRT484037 CMKLR1 chemerin chemokine-like receptor 1 2 6
MIRT489367 RAB11B RAB11B, member RAS oncogene family 2 2
MIRT493927 FAM127A retrotransposon Gag like 8C 2 4
MIRT494841 RPAP2 RNA polymerase II associated protein 2 2 2
MIRT494970 TMEM233 transmembrane protein 233 2 2
MIRT496633 SLC46A1 solute carrier family 46 member 1 2 2
MIRT498517 ZNF83 zinc finger protein 83 2 8
MIRT499461 ZNF669 zinc finger protein 669 2 8
MIRT500254 ZNF791 zinc finger protein 791 2 6
MIRT500271 ZNF781 zinc finger protein 781 2 8
MIRT500327 ZNF487P zinc finger protein 487 1 3
MIRT502556 EBAG9 estrogen receptor binding site associated, antigen, 9 2 2
MIRT503658 ZNF138 zinc finger protein 138 2 6
MIRT504010 ACSL6 acyl-CoA synthetase long chain family member 6 2 2
MIRT504592 ZNF440 zinc finger protein 440 2 4
MIRT504827 EREG epiregulin 2 2
MIRT513587 DCTN6 dynactin subunit 6 2 2
MIRT515145 ZNF732 zinc finger protein 732 2 8
MIRT519375 FKBP14 FK506 binding protein 14 2 2
MIRT519635 ZNF772 zinc finger protein 772 2 4
MIRT525273 C18orf32 chromosome 18 open reading frame 32 2 2
MIRT525446 GPATCH2L G-patch domain containing 2 like 2 2
MIRT526165 ANKRD65 ankyrin repeat domain 65 2 2
MIRT526580 CCDC43 coiled-coil domain containing 43 2 2
MIRT528010 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT528140 LRRC38 leucine rich repeat containing 38 2 2
MIRT528641 NEURL neuralized E3 ubiquitin protein ligase 1 1 1
MIRT529290 AGK acylglycerol kinase 2 2
MIRT532739 CMTM6 CKLF like MARVEL transmembrane domain containing 6 2 2
MIRT534299 SKIDA1 SKI/DACH domain containing 1 2 2
MIRT534335 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT537952 DSE dermatan sulfate epimerase 2 2
MIRT538789 C3orf52 chromosome 3 open reading frame 52 2 2
MIRT544379 ZNF266 zinc finger protein 266 2 2
MIRT544450 KRBOX4 KRAB box domain containing 4 2 2
MIRT545375 PM20D2 peptidase M20 domain containing 2 2 2
MIRT548154 FRAT2 FRAT2, WNT signaling pathway regulator 2 2
MIRT552477 ZNF202 zinc finger protein 202 2 2
MIRT557714 GABARAPL1 GABA type A receptor associated protein like 1 2 2
MIRT558897 CCDC58 coiled-coil domain containing 58 2 2
MIRT562727 ZNF468 zinc finger protein 468 2 2
MIRT563640 ZNF675 zinc finger protein 675 2 2
MIRT563672 ZNF254 zinc finger protein 254 2 2
MIRT563682 RPS26 ribosomal protein S26 2 2
MIRT563722 ZNF107 zinc finger protein 107 2 2
MIRT563947 ZNF431 zinc finger protein 431 2 4
MIRT565266 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT566218 PTMA prothymosin, alpha 2 4
MIRT568330 BACH1 BTB domain and CNC homolog 1 2 2
MIRT570862 ZNF525 zinc finger protein 525 2 2
MIRT570871 ZFP1 ZFP1 zinc finger protein 2 2
MIRT571513 ZNF625 zinc finger protein 625 2 2
MIRT572286 ZNF584 zinc finger protein 584 2 2
MIRT572896 RUNDC3B RUN domain containing 3B 2 2
MIRT573083 APLN apelin 2 2
MIRT611739 SERPING1 serpin family G member 1 2 4
MIRT612667 POU2F1 POU class 2 homeobox 1 2 4
MIRT612738 MYOCD myocardin 2 2
MIRT614005 PAOX polyamine oxidase 2 2
MIRT616522 URM1 ubiquitin related modifier 1 2 2
MIRT617811 EMX2 empty spiracles homeobox 2 2 2
MIRT618630 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT619753 MYO1F myosin IF 2 2
MIRT619971 ZSCAN22 zinc finger and SCAN domain containing 22 2 2
MIRT621350 GUCA1B guanylate cyclase activator 1B 2 2
MIRT621379 CLNK cytokine dependent hematopoietic cell linker 2 2
MIRT621510 ZNF638 zinc finger protein 638 2 2
MIRT621536 ZNF500 zinc finger protein 500 2 2
MIRT621616 UHRF1BP1L UHRF1 binding protein 1 like 2 2
MIRT621771 TMEM87B transmembrane protein 87B 2 2
MIRT623498 KCNQ3 potassium voltage-gated channel subfamily Q member 3 2 2
MIRT624079 DR1 down-regulator of transcription 1 2 2
MIRT627001 LINC00598 long intergenic non-protein coding RNA 598 2 4
MIRT628435 ANTXR2 anthrax toxin receptor 2 2 2
MIRT635439 SLC25A44 solute carrier family 25 member 44 2 2
MIRT637161 TMEM50A transmembrane protein 50A 2 2
MIRT638482 OTUB2 OTU deubiquitinase, ubiquitin aldehyde binding 2 2 4
MIRT639287 TFAP2A transcription factor AP-2 alpha 2 4
MIRT639395 NEURL1B neuralized E3 ubiquitin protein ligase 1B 2 2
MIRT641046 PTPRB protein tyrosine phosphatase, receptor type B 2 2
MIRT642576 PSTPIP1 proline-serine-threonine phosphatase interacting protein 1 2 2
MIRT644206 CBS cystathionine-beta-synthase 2 2
MIRT645321 GPR158 G protein-coupled receptor 158 2 2
MIRT645682 TBC1D13 TBC1 domain family member 13 2 2
MIRT646633 COA4 cytochrome c oxidase assembly factor 4 homolog 2 2
MIRT647269 AADACL3 arylacetamide deacetylase like 3 2 2
MIRT648384 ZNF22 zinc finger protein 22 2 2
MIRT648626 LEMD2 LEM domain containing 2 2 2
MIRT650077 MTL5 testis expressed metallothionein like protein 2 2
MIRT650138 ZNF426 zinc finger protein 426 2 2
MIRT650240 CD68 CD68 molecule 2 2
MIRT650836 SEMA4G semaphorin 4G 2 2
MIRT651100 ZNF48 zinc finger protein 48 2 2
MIRT651128 ZNF398 zinc finger protein 398 2 4
MIRT651638 WASF2 WAS protein family member 2 2 2
MIRT652315 TNPO3 transportin 3 2 2
MIRT652753 TET3 tet methylcytosine dioxygenase 3 2 2
MIRT653200 SP9 Sp9 transcription factor 2 2
MIRT653388 SLIT1 slit guidance ligand 1 2 2
MIRT653714 SLC25A32 solute carrier family 25 member 32 2 2
MIRT654498 RABIF RAB interacting factor 2 2
MIRT654811 PPP3R1 protein phosphatase 3 regulatory subunit B, alpha 2 2
MIRT655161 PHF20L1 PHD finger protein 20 like 1 2 2
MIRT655426 PALM2-AKAP2 PALM2-AKAP2 readthrough 2 2
MIRT655538 PADI2 peptidyl arginine deiminase 2 2 4
MIRT656247 MEX3A mex-3 RNA binding family member A 2 2
MIRT656377 MCU mitochondrial calcium uniporter 2 2
MIRT656579 LSAMP limbic system-associated membrane protein 2 2
MIRT656871 KIF26B kinesin family member 26B 2 2
MIRT656972 KDM5B lysine demethylase 5B 2 2
MIRT657211 IGF1R insulin like growth factor 1 receptor 2 2
MIRT657822 GJD3 gap junction protein delta 3 2 2
MIRT658427 FAM175B abraxas 2, BRISC complex subunit 2 2
MIRT658462 FAM102B family with sequence similarity 102 member B 2 2
MIRT658638 ENAH ENAH, actin regulator 2 2
MIRT660047 C12orf5 TP53 induced glycolysis regulatory phosphatase 1 1
MIRT660418 ATXN1L ataxin 1 like 2 2
MIRT660625 ANKRD52 ankyrin repeat domain 52 2 2
MIRT660771 AKAP2 A-kinase anchoring protein 2 2 2
MIRT660978 ABHD2 abhydrolase domain containing 2 2 2
MIRT660999 ABHD10 abhydrolase domain containing 10 2 2
MIRT662146 IPO11 importin 11 2 2
MIRT662558 IL2RA interleukin 2 receptor subunit alpha 2 2
MIRT663289 TECPR2 tectonin beta-propeller repeat containing 2 2 2
MIRT663809 RNF128 ring finger protein 128, E3 ubiquitin protein ligase 2 2
MIRT663820 NLRP12 NLR family pyrin domain containing 12 2 2
MIRT666963 PITPNM3 PITPNM family member 3 2 2
MIRT668239 FZD2 frizzled class receptor 2 2 2
MIRT669328 BSND barttin CLCNK type accessory beta subunit 2 2
MIRT679289 SSBP2 single stranded DNA binding protein 2 2 2
MIRT687506 NCKAP1 NCK associated protein 1 2 2
MIRT697018 EPDR1 ependymin related 1 2 2
MIRT698929 SPATA2 spermatogenesis associated 2 2 2
MIRT700850 PERP PERP, TP53 apoptosis effector 2 2
MIRT702425 KIAA1958 KIAA1958 2 2
MIRT703937 EPB41L1 erythrocyte membrane protein band 4.1 like 1 2 2
MIRT705374 ATP1B3 ATPase Na+/K+ transporting subunit beta 3 2 2
MIRT708308 CDH8 cadherin 8 2 2
MIRT708644 LYRM7 LYR motif containing 7 2 2
MIRT708960 SLC12A3 solute carrier family 12 member 3 2 2
MIRT709460 KRTAP19-1 keratin associated protein 19-1 2 2
MIRT709944 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT710089 FAM229B family with sequence similarity 229 member B 2 2
MIRT711120 CYYR1 cysteine and tyrosine rich 1 2 2
MIRT711553 FAM20B FAM20B, glycosaminoglycan xylosylkinase 2 2
MIRT711575 ASPA aspartoacylase 2 2
MIRT712231 RCC2 regulator of chromosome condensation 2 2 2
MIRT712401 MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 2 2
MIRT713193 WNK2 WNK lysine deficient protein kinase 2 2 2
MIRT713316 TMEM44 transmembrane protein 44 2 2
MIRT713508 PAFAH2 platelet activating factor acetylhydrolase 2 2 2
MIRT713615 MED8 mediator complex subunit 8 2 2
MIRT713956 BCL2L13 BCL2 like 13 2 2
MIRT714347 CES2 carboxylesterase 2 2 2
MIRT714987 TSPAN11 tetraspanin 11 2 2
MIRT715165 MAPK14 mitogen-activated protein kinase 14 2 2
MIRT715433 RGS6 regulator of G protein signaling 6 2 2
MIRT715465 NEGR1 neuronal growth regulator 1 2 2
MIRT715886 GNG2 G protein subunit gamma 2 2 2
MIRT716089 HARS histidyl-tRNA synthetase 2 2
MIRT717379 RBM41 RNA binding motif protein 41 2 2
MIRT717395 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT717964 PXMP4 peroxisomal membrane protein 4 2 2
MIRT719212 CAMK4 calcium/calmodulin dependent protein kinase IV 2 2
MIRT720580 FAM9C family with sequence similarity 9 member C 2 2
MIRT720712 RAPGEF6 Rap guanine nucleotide exchange factor 6 2 2
MIRT721069 TGFBI transforming growth factor beta induced 2 2
MIRT721326 IFNAR2 interferon alpha and beta receptor subunit 2 2 2
MIRT721473 BTN3A2 butyrophilin subfamily 3 member A2 2 2
MIRT721734 SDK2 sidekick cell adhesion molecule 2 2 2
MIRT723545 ZDHHC22 zinc finger DHHC-type containing 22 2 2
MIRT723745 AIFM2 apoptosis inducing factor, mitochondria associated 2 2 2
MIRT723787 MUC17 mucin 17, cell surface associated 2 2
MIRT725499 GANAB glucosidase II alpha subunit 2 2
MIRT735726 FOXO3 forkhead box O3 2 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-629 Glucose NULL 5793 Microarray endothelial cells 24394957 2014 up-regulated
miR-629 Ascorbate approved 54670067 Microarray Metastatic melanoma cell lines 25202679 2014 up-regualted
miR-629 Vorinostat (SAHA) approved 5311 Microarray A549 human non-small cell lung cancer cells 19513533 2009 up-regulated
miR-629 Sorafenib approved 216239 Quantitative real-time PCR hepatocellular carcinoma 21530512 2011 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-629 Paroxetine 43815 approved sensitive High Normal lymphoblastoid cell line
hsa-mir-629 Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-629 Doxorubicin 31703 NSC123127 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-629 Verapamil 2520 NSC272366 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-629 Daunorubicin 30323 NSC82151 approved resistant High Lymphoblastic Leukemia tissue
hsa-miR-629 Vincristine 5978 approved resistant High Lymphoblastic Leukemia tissue
hsa-miR-629 L-Asparaginase resistant High Lymphoblastic Leukemia tissue
hsa-miR-629 Prednisolone 5755 NSC9120 approved resistant High Lymphoblastic Leukemia tissue
hsa-miR-629 Paroxetine 43815 approved resistant High Normal lymphoblastoid cell line
hsa-miR-629 Sunitinib 5329102 NSC750690 approved sensitive High Renal Cell Cancer tissue
hsa-miR-629 Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-miR-629 Fluorouracil 3385 NSC19893 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-miR-629 Cisplatin 5460033 NSC119875 approved sensitive High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-629 1'-Acetoxychavicol acetate 119104 NSC711510 resistant Low Cervical Cancer cell line (Ca Ski, SiHa)
hsa-miR-629 Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-629 Sunitinib 5329102 NSC750690 approved sensitive High Renal Cell Cancer tissue
hsa-mir-629 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-629 Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-629 Androstenedione+Anastrozole sensitive cell line (MCF-7)
hsa-mir-629 Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-mir-629 Cisplatin 5460033 NSC119875 approved resistant cell line (KYSE)
hsa-mir-629 Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-miR-629 Paclitaxel 36314 NSC125973 approved resistant cell line (HeyA8)
hsa-miR-629 Testosterone+Exemestane sensitive cell line (MCF-7)
hsa-miR-629 Testosterone+Tamoxifen sensitive cell line (MCF-7)
hsa-miR-629 Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-629 Cisplatin 5460033 NSC119875 approved resistant cell line (RPMI2650)
hsa-miR-629 Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-629 Paclitaxel 36314 NSC125973 approved resistant cell line (SKOV3)
hsa-miR-629 Pegylated interferon alpha+Ribavirin sensitive tissue (chronic hepatitis C)
hsa-miR-629 Cisplatin 5460033 NSC119875 approved sensitive cell line (IGROV-1)
hsa-miR-629 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-629 Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR3)
hsa-miR-629 Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR4)
hsa-miR-629 Cisplatin 5460033 NSC119875 approved sensitive cell line (H23)
hsa-miR-629 Cisplatin 5460033 NSC119875 approved resistant cell line (OVCAR3)
hsa-miR-629 Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide/Methotrexate/Gemcitabine resistant cell line (Bats-72)
hsa-miR-629-3p Paroxetine 43815 approved resistant High Normal lymphoblastoid cell line
hsa-miR-629-3p Chemotherapy sensitive High Epithelial Ovarian Cancer tissue
hsa-miR-629-3p Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (A375)
hsa-miR-629-3p Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (TAMR4)
hsa-miR-629-3p Cisplatin 5460033 NSC119875 approved resistant High Gallbladder Cancer cell line (GBC-SD, NOZ)
hsa-miR-629-3p Ponatinib 24826799 NSC758487 approved resistant High Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-629-3p Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-629-3p Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-629-3p Oxaliplatin 6857599 NSC266046 approved sensitive Low Colorectal Cancer cell line (HCT-116)
hsa-miR-629-3p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-629-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-629-3p Rituximab sensitive High Diffuse Large B-Cell Lymphoma cell line (DB, NU-DHL-1, NU-DUL-1, MC-116, SU-DHL-4, SU-DHL-5, FARAGE, HBL-1, OCI-Ly3, OCI-Ly7, OCI-Ly8, OCI-Ly19, RIVA, SU-DHL-8, U2932)
hsa-miR-629-3p Cisplatin 5460033 NSC119875 approved resistant Low Oral Cancer cell line (SAS, HSC-3, HSC-4)
hsa-miR-629-3p Cisplatin 5460033 NSC119875 approved resistant High Hypopharyngeal Cancer cell line (FaDu)
hsa-miR-629-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-629-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-629-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CAL-27) (mitochondrial RNA)
hsa-miR-629-3p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-629-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-629-3p Tamoxifen+Fulvestrant sensitive cell line (LCC9)
hsa-miR-629-3p Leuprorelin/Goserelin + Bicalutamide sensitive tissue (prostate cancer)
hsa-miR-629-3p 4-Hydroxytamoxifen+Tamoxifen sensitive cell line (LY2)
hsa-miR-629-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-629-3p Pegylated interferon alpha+Ribavirin sensitive tissue (chronic hepatitis C)
hsa-miR-629-3p Tamoxifen 2733525 NSC180973 approved resistant cell line (TamR4)
hsa-miR-629-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (IGROV-1)
hsa-miR-629-3p Gemcitabine 60750 NSC613327 approved resistant cell line (MDA-231)
hsa-miR-629-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-629-3p Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-miR-629-3p Cisplatin 5460033 NSC119875 approved resistant cell line (H460)
hsa-miR-629-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (OVCAR3)
hsa-miR-629-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (H23)

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