pre-miRNA Information
pre-miRNA hsa-mir-548am   
Genomic Coordinates chrX: 16627012 - 16627085
Description Homo sapiens miR-548am stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548am-5p
Sequence 10| AAAAGUAAUUGCGGUUUUUGCC |31
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 3 X - 16627074 29233923 MiREDiBase
A-to-I 4 X - 16627073 29233923 MiREDiBase
A-to-I 7 X - 16627070 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs181147953 1 dbSNP
rs1023899452 12 dbSNP
rs1319380894 14 dbSNP
rs768483765 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZNF711   
Synonyms CMPX1, MRX97, ZNF4, ZNF5, ZNF6, Zfp711, dJ75N13.1
Description zinc finger protein 711
Transcript NM_021998   
Expression
Putative miRNA Targets on ZNF711
3'UTR of ZNF711
(miRNA target sites are highlighted)
>ZNF711|NM_021998|3'UTR
   1 TAAGATCAATATAAAGAAAGAAGCTATTTAGGAGATATGATATGCTACTTGGGAGAAAACTCTCACTAACTGTCTCACCG
  81 GGTTTCAAAGCTTGATACTAAACCATGACTTTACATTCTTTGTATTAAAGATCTTAAAATATTTGAATTCACAGGGGATC
 161 CCATAGCCCTTTGAAAATTACTTAAAGAATTTAAGAAGCACTATAGAATGGTTACAGAAAAACTTCTTAAGTATCTGTGT
 241 AATAGTATTATATGCATACTTAAACTACAGAGGGGAAAAGCAAAGACAAATACTTTATTTGGCTGATTATGTTAGATACA
 321 AATGTTTCTGAGAAGAGAATACATAATTGAGTTTAGTGATGCTTTGCTATAGCAAGCAAACCCACTTTTATGCAATTTTA
 401 GAAATGGGGCAGGGAAACAAAATGTGGTCATTCATCAGTCACTTAGTCATTGAGCCTTTTATATTGTACCTGGAAATTAA
 481 ATTCCAGCAATGACAAAAGTTTTGTGTATTCATTAAAAGAAAACTAACTGGAAAACAGGTTAGATTAATTCAGTACTATT
 561 AAAAAAGAATTCAGAGCTGTTAATATTTTATCACAGGATAGGATACTTAAAATATAGCATTCTGTGCTGAGATCTAAGGT
 641 GAAGTCTATAAAGATTAAAGTTCCCTTTTTTCTGATGTTCAAGTTGATTGTTGTTCAGTATGGCATATATGACAAAAGTA
 721 TATTTGAGTCAAATGTGGCTTTCTAAAATGGATGCAACATTAGCGTTGCAAACAAAATCAGCACTATATTTCTTAATGAT
 801 CTAAAGATTAATTTGAGAGAACACAGTTTTCTTAAATATTATAATGTCTAGAGTTTTTTTAGGACAGTCTTAGCAAGTAT
 881 GATTGTTCTAGTCTTACTTGCTCTAATGTTTAAAGGTGCAATTTTATGCCATTATTGAAATTGATTTTTAAAATCTATAT
 961 ACCATATGATTAACATGCATTTTCAATATGAGGCAGTGTTTATGCAGTATTTAACAGAGCAATCTGCTGCCAATAGAGTT
1041 TGGAGGTGGATATTTAGTTTACAGTGTATAAACTTAAAATATGCATCCCTTTAACAACGCTTTGTGTTAGCATGCTGCAA
1121 ATCAAAATGGCACTTAATATTAAAAGCTGGTTTAGGGAAATTTTATGAAAATCCTGTTCATAAATGTAATGCATATGATA
1201 TGTACTTTTAAGTTTTAGTTGCTTCATGTTTACATTCAGCTGTTCAACATAATTAAAATGTAATTTTACTTCATGCTATA
1281 TTGTGGCTTTGTGTTTCAAATAATGTTCACCTTTCTGTTTTTGCACCAGATAAGAATCAGTTCCTTGAGAATAAATTTTT
1361 TATCTTTCTTAACTTCAGAATATTAAATTTGGAATATCTACTAAAATTGTGTGTTATGTGGCTGTAAATGATGTACACGC
1441 TGTAAAATAAGATCGCTACTGTTATGTGGGATTATTATTTCTAAATGTTACTCATTGAAATGAGCATACAATAAAAAGCA
1521 TTTATTGCACTTAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ccGUUUUUGGCGUUAAUGAAAa 5'
            ||||:|   ||| |||||| 
Target 5' agCAAAGA---CAAATACTTTa 3'
279 - 297 137.00 -10.30
2
miRNA  3' ccGUUUUUGGCG----UUAAUGAAaa 5'
            || |: || :    ||||||||  
Target 5' ccCATAGCCCTTTGAAAATTACTTaa 3'
160 - 185 134.00 -5.40
3
miRNA  3' ccGUUU---UUGGC---GUU--AAUGAAaa 5'
            |||:   :|::|   :|:  ||||||  
Target 5' agCAAGTATGATTGTTCTAGTCTTACTTgc 3'
872 - 901 122.00 -11.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
368748 48 ClinVar
368749 119 ClinVar
368750 123 ClinVar
368751 154 ClinVar
913215 170 ClinVar
368752 189 ClinVar
368753 273 ClinVar
914339 525 ClinVar
368754 541 ClinVar
368755 633 ClinVar
368756 764 ClinVar
914340 966 ClinVar
368757 1261 ClinVar
368758 1412 ClinVar
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs979991291 7 dbSNP
rs1194291447 9 dbSNP
rs1257606663 14 dbSNP
rs756138833 21 dbSNP
rs1246526859 24 dbSNP
rs1206674474 25 dbSNP
rs1394143628 33 dbSNP
rs758841896 39 dbSNP
rs1475562288 41 dbSNP
rs1031090850 43 dbSNP
rs753972416 45 dbSNP
rs755503652 48 dbSNP
rs1271497044 53 dbSNP
rs958199161 59 dbSNP
rs1211510941 61 dbSNP
rs989701420 65 dbSNP
rs1196008391 66 dbSNP
rs183230087 72 dbSNP
rs187814241 80 dbSNP
rs1273786640 87 dbSNP
rs1340345452 96 dbSNP
rs1272713008 99 dbSNP
rs1057516015 119 dbSNP
rs907642064 119 dbSNP
rs755444976 123 dbSNP
rs1037745149 125 dbSNP
rs1441453422 143 dbSNP
rs759808176 148 dbSNP
rs2343388 154 dbSNP
rs1410276087 156 dbSNP
rs1393295226 158 dbSNP
rs748864329 158 dbSNP
rs1196055993 162 dbSNP
rs922612354 167 dbSNP
rs191037441 168 dbSNP
rs748560628 170 dbSNP
rs1008421604 187 dbSNP
rs1057516016 189 dbSNP
rs1398957204 195 dbSNP
rs1470101852 197 dbSNP
rs1464285824 206 dbSNP
rs752843499 211 dbSNP
rs891842990 215 dbSNP
rs1184440003 223 dbSNP
rs182454327 224 dbSNP
rs886390385 228 dbSNP
rs941844913 229 dbSNP
rs866825395 231 dbSNP
rs1212122276 251 dbSNP
rs894861460 252 dbSNP
rs1337201693 262 dbSNP
rs1012009325 272 dbSNP
rs187954106 273 dbSNP
rs1348484115 276 dbSNP
rs1281154489 282 dbSNP
rs1442671951 286 dbSNP
rs1370064495 292 dbSNP
rs1323616880 294 dbSNP
rs1442697579 312 dbSNP
rs1394714203 333 dbSNP
rs771861060 370 dbSNP
rs1157759634 375 dbSNP
rs1398389984 377 dbSNP
rs1265473166 384 dbSNP
rs1406425140 389 dbSNP
rs1160869698 394 dbSNP
rs956136 402 dbSNP
rs1001398730 409 dbSNP
rs1252820072 424 dbSNP
rs775155616 425 dbSNP
rs746910955 432 dbSNP
rs1329982513 435 dbSNP
rs1247463869 486 dbSNP
rs756198409 487 dbSNP
rs768536768 490 dbSNP
rs778223596 497 dbSNP
rs776691300 504 dbSNP
rs1240861548 513 dbSNP
rs1014774250 517 dbSNP
rs1347019216 520 dbSNP
rs1315627063 539 dbSNP
rs761918833 541 dbSNP
rs958313359 561 dbSNP
rs1371294250 575 dbSNP
rs973181319 577 dbSNP
rs920257322 595 dbSNP
rs878990041 602 dbSNP
rs1216082840 603 dbSNP
rs1428207870 604 dbSNP
rs1265941836 605 dbSNP
rs6653049 633 dbSNP
rs773369151 634 dbSNP
rs1394969934 647 dbSNP
rs778970642 649 dbSNP
rs911451299 654 dbSNP
rs1172192383 655 dbSNP
rs1374878064 660 dbSNP
rs1426142337 664 dbSNP
rs1186219774 671 dbSNP
rs1251650229 672 dbSNP
rs1476926696 676 dbSNP
rs1170320101 688 dbSNP
rs1018463567 693 dbSNP
rs964448135 708 dbSNP
rs976872068 709 dbSNP
rs944281817 717 dbSNP
rs1212755742 722 dbSNP
rs1312622781 726 dbSNP
rs922720612 733 dbSNP
rs1212490983 740 dbSNP
rs1363600317 741 dbSNP
rs1278315502 745 dbSNP
rs1462867700 753 dbSNP
rs1375391225 762 dbSNP
rs779266566 764 dbSNP
rs1437120080 765 dbSNP
rs1360167835 766 dbSNP
rs1170164171 770 dbSNP
rs982808476 787 dbSNP
rs907773312 795 dbSNP
rs1196962958 806 dbSNP
rs941976465 808 dbSNP
rs1474882920 809 dbSNP
rs763112022 810 dbSNP
rs891965381 815 dbSNP
rs1255481740 816 dbSNP
rs6623251 824 dbSNP
rs1043179981 827 dbSNP
rs1250592178 842 dbSNP
rs1337776063 849 dbSNP
rs904518707 851 dbSNP
rs916423638 852 dbSNP
rs1258243368 872 dbSNP
rs1001514880 874 dbSNP
rs1034332502 885 dbSNP
rs895709668 886 dbSNP
rs1014181245 919 dbSNP
rs746578641 920 dbSNP
rs772252407 927 dbSNP
rs1293591016 930 dbSNP
rs751882595 958 dbSNP
rs1297986312 962 dbSNP
rs755495184 964 dbSNP
rs1460734137 967 dbSNP
rs1402735893 984 dbSNP
rs1247494500 987 dbSNP
rs549651534 988 dbSNP
rs973556508 998 dbSNP
rs906326882 1005 dbSNP
rs1415830434 1010 dbSNP
rs1167149882 1023 dbSNP
rs1264082707 1050 dbSNP
rs999134576 1058 dbSNP
rs1249677226 1066 dbSNP
rs768389225 1067 dbSNP
rs1175283534 1069 dbSNP
rs768204597 1076 dbSNP
rs1052073636 1091 dbSNP
rs1238558128 1098 dbSNP
rs894028206 1099 dbSNP
rs1488408728 1117 dbSNP
rs1011172148 1130 dbSNP
rs1018826775 1131 dbSNP
rs753377609 1140 dbSNP
rs1322864935 1154 dbSNP
rs1306830300 1162 dbSNP
rs1206245961 1165 dbSNP
rs1265422595 1169 dbSNP
rs1379646117 1181 dbSNP
rs1027436034 1191 dbSNP
rs1440492106 1198 dbSNP
rs998387743 1202 dbSNP
rs1165098927 1203 dbSNP
rs756780052 1210 dbSNP
rs1193195111 1216 dbSNP
rs1363165180 1227 dbSNP
rs1156918693 1243 dbSNP
rs1420795353 1258 dbSNP
rs73234669 1261 dbSNP
rs747660886 1263 dbSNP
rs1162376265 1270 dbSNP
rs187493107 1277 dbSNP
rs1209916708 1278 dbSNP
rs1454185900 1303 dbSNP
rs944246150 1305 dbSNP
rs1258414427 1307 dbSNP
rs192825862 1311 dbSNP
rs1290625956 1319 dbSNP
rs1310484932 1327 dbSNP
rs1233963472 1331 dbSNP
rs1369071070 1339 dbSNP
rs1358055003 1344 dbSNP
rs977070169 1345 dbSNP
rs913381683 1352 dbSNP
rs1384421310 1356 dbSNP
rs946264825 1362 dbSNP
rs909896709 1365 dbSNP
rs1398902549 1398 dbSNP
rs1361047441 1404 dbSNP
rs1243520809 1410 dbSNP
rs779890560 1412 dbSNP
rs963591583 1422 dbSNP
rs1379149687 1433 dbSNP
rs1199200196 1434 dbSNP
rs973346226 1439 dbSNP
rs1259101282 1440 dbSNP
rs1356929276 1444 dbSNP
rs1489568569 1452 dbSNP
rs1287299875 1453 dbSNP
rs773265211 1455 dbSNP
rs1346253015 1456 dbSNP
rs1234307506 1458 dbSNP
rs762997004 1465 dbSNP
rs1293566279 1466 dbSNP
rs1055689879 1477 dbSNP
rs1046244989 1487 dbSNP
rs895825839 1494 dbSNP
rs1178511052 1496 dbSNP
rs1014586554 1503 dbSNP
rs1404145358 1518 dbSNP
rs1172914576 1523 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 7552.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065670. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM1065670
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / 4-thiouridine, 3_ML_LG
Location of target site ENST00000360700.4 | 3UTR | ACAAAUACUUUAUUUGGCUGAUUAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
184 hsa-miR-548am-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057132 DDIT4 DNA damage inducible transcript 4 2 4
MIRT063379 ETNK1 ethanolamine kinase 1 2 2
MIRT072501 RAB8B RAB8B, member RAS oncogene family 2 2
MIRT082193 ACTN4 actinin alpha 4 2 6
MIRT083043 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT085196 SLC5A3 solute carrier family 5 member 3 2 4
MIRT088913 FOXN2 forkhead box N2 2 4
MIRT089506 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 6
MIRT092047 ABHD5 abhydrolase domain containing 5 2 2
MIRT094692 FEM1C fem-1 homolog C 2 2
MIRT095403 UBE2D2 ubiquitin conjugating enzyme E2 D2 2 2
MIRT096509 BRIX1 BRX1, biogenesis of ribosomes 2 2
MIRT101303 FAM135A family with sequence similarity 135 member A 2 2
MIRT103366 CBX3 chromobox 3 2 2
MIRT103883 FOXK1 forkhead box K1 2 2
MIRT104343 CLDN12 claudin 12 2 2
MIRT104508 PEG10 paternally expressed 10 2 6
MIRT111808 MPZL1 myelin protein zero like 1 2 2
MIRT177246 BMI1 BMI1 proto-oncogene, polycomb ring finger 2 2
MIRT177281 COMMD3-BMI1 COMMD3-BMI1 readthrough 2 2
MIRT177633 UBE2D1 ubiquitin conjugating enzyme E2 D1 2 6
MIRT178049 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT179109 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 2 6
MIRT179594 CAPZA1 capping actin protein of muscle Z-line alpha subunit 1 2 6
MIRT195307 LEPROT leptin receptor overlapping transcript 2 2
MIRT203152 BACH1 BTB domain and CNC homolog 1 2 2
MIRT208437 ZBTB38 zinc finger and BTB domain containing 38 2 2
MIRT214585 SMAD5 SMAD family member 5 2 4
MIRT216112 IL6ST interleukin 6 signal transducer 2 2
MIRT216363 CCNB1 cyclin B1 2 4
MIRT220059 MDFIC MyoD family inhibitor domain containing 2 2
MIRT226737 ANP32B acidic nuclear phosphoprotein 32 family member B 2 4
MIRT227706 TBC1D13 TBC1 domain family member 13 2 2
MIRT230079 SH3BGRL SH3 domain binding glutamate rich protein like 2 2
MIRT248644 HMGN2 high mobility group nucleosomal binding domain 2 2 4
MIRT254799 XRCC6 X-ray repair cross complementing 6 2 6
MIRT264388 YAP1 Yes associated protein 1 2 2
MIRT266982 LRRC55 leucine rich repeat containing 55 2 4
MIRT273957 SPRYD4 SPRY domain containing 4 2 2
MIRT281809 MAP2K1 mitogen-activated protein kinase kinase 1 2 2
MIRT293262 DR1 down-regulator of transcription 1 2 2
MIRT297105 RGPD4 RANBP2-like and GRIP domain containing 4 2 2
MIRT308178 PDE12 phosphodiesterase 12 2 2
MIRT309022 USP53 ubiquitin specific peptidase 53 2 2
MIRT311477 PRRC1 proline rich coiled-coil 1 2 2
MIRT312595 G3BP1 G3BP stress granule assembly factor 1 2 4
MIRT328137 ZNF711 zinc finger protein 711 2 2
MIRT329321 FAM53C family with sequence similarity 53 member C 2 2
MIRT334649 NEK7 NIMA related kinase 7 2 2
MIRT340680 THRAP3 thyroid hormone receptor associated protein 3 2 2
MIRT378865 ITGB8 integrin subunit beta 8 2 2
MIRT395798 SPCS3 signal peptidase complex subunit 3 2 2
MIRT405648 WBP4 WW domain binding protein 4 2 4
MIRT408294 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT442112 ZNRF2 zinc and ring finger 2 2 8
MIRT442855 GTF2H5 general transcription factor IIH subunit 5 2 2
MIRT443131 VLDLR very low density lipoprotein receptor 2 2
MIRT443162 ZDHHC21 zinc finger DHHC-type containing 21 2 2
MIRT443313 PRPS1L1 phosphoribosyl pyrophosphate synthetase 1-like 1 2 2
MIRT445095 ZNF207 zinc finger protein 207 2 2
MIRT445399 PTCHD1 patched domain containing 1 2 4
MIRT447085 MCC mutated in colorectal cancers 2 2
MIRT447315 ZNF562 zinc finger protein 562 2 2
MIRT447528 MRPS5 mitochondrial ribosomal protein S5 2 2
MIRT449526 TM6SF1 transmembrane 6 superfamily member 1 2 2
MIRT449917 C11orf34 placenta expressed transcript 1 1 2
MIRT450566 SHFM1 SEM1, 26S proteasome complex subunit 2 2
MIRT450734 PVRL3 nectin cell adhesion molecule 3 2 2
MIRT454938 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 12
MIRT455907 KIF2C kinesin family member 2C 2 2
MIRT463747 YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon 2 8
MIRT471197 PHB2 prohibitin 2 2 2
MIRT472779 MTMR6 myotubularin related protein 6 2 8
MIRT474472 KLHL11 kelch like family member 11 2 8
MIRT476000 GTPBP2 GTP binding protein 2 2 2
MIRT482291 AGO2 argonaute 2, RISC catalytic component 2 4
MIRT485873 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT486207 ERH ERH, mRNA splicing and mitosis factor 2 4
MIRT488624 FAM3C family with sequence similarity 3 member C 2 6
MIRT489999 DDB1 damage specific DNA binding protein 1 2 2
MIRT493491 IPMK inositol polyphosphate multikinase 2 2
MIRT494295 CEP120 centrosomal protein 120 2 2
MIRT498007 ZBTB20 zinc finger and BTB domain containing 20 2 2
MIRT498488 PTBP2 polypyrimidine tract binding protein 2 2 10
MIRT498575 TMEM30B transmembrane protein 30B 2 2
MIRT499882 SVOP SV2 related protein 2 10
MIRT500235 INHBA inhibin beta A subunit 2 10
MIRT500709 TRIM37 tripartite motif containing 37 2 2
MIRT501003 SPPL2A signal peptide peptidase like 2A 2 4
MIRT501038 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502751 CLIP1 CAP-Gly domain containing linker protein 1 2 8
MIRT502813 CELSR3 cadherin EGF LAG seven-pass G-type receptor 3 2 6
MIRT502903 CDK4 cyclin dependent kinase 4 2 8
MIRT503498 ZNF154 zinc finger protein 154 2 6
MIRT503732 GRM5 glutamate metabotropic receptor 5 2 2
MIRT505152 YOD1 YOD1 deubiquitinase 2 2
MIRT505817 RSBN1 round spermatid basic protein 1 2 8
MIRT505856 POLR1B RNA polymerase I subunit B 2 4
MIRT509299 NPM3 nucleophosmin/nucleoplasmin 3 2 6
MIRT516844 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT520534 TRA2B transformer 2 beta homolog 2 2
MIRT520738 TM9SF3 transmembrane 9 superfamily member 3 2 6
MIRT525418 SHISA9 shisa family member 9 2 4
MIRT525882 ARL13B ADP ribosylation factor like GTPase 13B 2 2
MIRT526028 RBM4B RNA binding motif protein 4B 2 2
MIRT526099 TMEM41B transmembrane protein 41B 2 2
MIRT527946 FRY FRY microtubule binding protein 2 2
MIRT528833 RAB32 RAB32, member RAS oncogene family 2 2
MIRT531077 SLC9A4 solute carrier family 9 member A4 2 4
MIRT535510 PANX1 pannexin 1 2 2
MIRT536697 IKZF5 IKAROS family zinc finger 5 2 2
MIRT536850 HMBOX1 homeobox containing 1 2 2
MIRT537217 GDE1 glycerophosphodiester phosphodiesterase 1 2 4
MIRT537849 EFNA5 ephrin A5 2 2
MIRT538360 CSE1L chromosome segregation 1 like 2 4
MIRT541257 GPC4 glypican 4 2 2
MIRT543250 PEX7 peroxisomal biogenesis factor 7 2 2
MIRT543465 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT543726 XKR9 XK related 9 2 2
MIRT543922 ESYT1 extended synaptotagmin 1 2 2
MIRT544014 KLRC3 killer cell lectin like receptor C3 2 2
MIRT544085 METTL8 methyltransferase like 8 2 2
MIRT544202 ANGPTL3 angiopoietin like 3 2 2
MIRT544823 ACSM2B acyl-CoA synthetase medium chain family member 2B 2 2
MIRT545061 PRELID1 PRELI domain containing 1 2 2
MIRT545229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT545304 SPC25 SPC25, NDC80 kinetochore complex component 2 2
MIRT545565 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT546512 SIK1 salt inducible kinase 1 2 2
MIRT546929 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 2
MIRT547690 KPNA1 karyopherin subunit alpha 1 2 4
MIRT547783 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT548702 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 2
MIRT548916 CHEK2 checkpoint kinase 2 2 4
MIRT549972 RPL7L1 ribosomal protein L7 like 1 2 4
MIRT550504 TMEM241 transmembrane protein 241 2 2
MIRT551064 MKLN1 muskelin 1 2 2
MIRT552826 XIAP X-linked inhibitor of apoptosis 2 4
MIRT553160 UBE2H ubiquitin conjugating enzyme E2 H 2 2
MIRT553845 SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein 2 2
MIRT554273 SIX4 SIX homeobox 4 2 2
MIRT555796 PCMTD1 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 2 2
MIRT556333 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT556514 LIPA lipase A, lysosomal acid type 2 2
MIRT556708 KLHL28 kelch like family member 28 2 2
MIRT556767 KLF7 Kruppel like factor 7 2 2
MIRT557005 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557161 HOXA13 homeobox A13 2 2
MIRT557502 GPR27 G protein-coupled receptor 27 2 4
MIRT558117 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 2 2
MIRT559359 ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) 2 2
MIRT560350 ZWINT ZW10 interacting kinetochore protein 2 2
MIRT561314 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT561898 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 2
MIRT561942 MFSD9 major facilitator superfamily domain containing 9 2 2
MIRT562950 TNIP2 TNFAIP3 interacting protein 2 2 2
MIRT563306 BBS10 Bardet-Biedl syndrome 10 2 2
MIRT563420 KIF3A kinesin family member 3A 2 2
MIRT563577 KIAA1586 KIAA1586 2 2
MIRT565891 NHS NHS actin remodeling regulator 2 2
MIRT566096 RCC2 regulator of chromosome condensation 2 2 2
MIRT566411 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT567274 HSP90AA1 heat shock protein 90 alpha family class A member 1 2 2
MIRT571483 CCDC80 coiled-coil domain containing 80 2 2
MIRT572954 VDAC2 voltage dependent anion channel 2 2 2
MIRT573643 ZNF724P zinc finger protein 724 2 2
MIRT573732 KHSRP KH-type splicing regulatory protein 2 2
MIRT609103 SMIM15 small integral membrane protein 15 2 6
MIRT617951 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT618394 PRKG2 protein kinase, cGMP-dependent, type II 2 2
MIRT619642 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 2 2
MIRT623470 KDM5A lysine demethylase 5A 2 2
MIRT629160 CTCFL CCCTC-binding factor like 2 2
MIRT638536 LYRM2 LYR motif containing 2 2 2
MIRT649498 CLDN16 claudin 16 2 2
MIRT683163 MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 2 2
MIRT691675 SLC43A3 solute carrier family 43 member 3 2 2
MIRT693216 MKI67 marker of proliferation Ki-67 2 2
MIRT695349 AQP3 aquaporin 3 (Gill blood group) 2 2
MIRT701038 PCGF5 polycomb group ring finger 5 2 2
MIRT708768 RYBP RING1 and YY1 binding protein 2 2
MIRT717573 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT719301 SETD7 SET domain containing lysine methyltransferase 7 2 2
MIRT725187 SDAD1 SDA1 domain containing 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-548am-5p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549, HCC827)
hsa-miR-548am-5p Gefitinib 123631 NSC715055 approved resistant High Non-Small Cell Lung Cancer cell line (A549, HCC827)
hsa-miR-548am-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-548am-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)

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