miRTarBase - #MIRT329381


—
pre-miRNA Information
pre-miRNA hsa-mir-8067   
Genomic Coordinates chr15: 62304658 - 62304734
Description Homo sapiens miR-8067 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-8067
Sequence 11| CCUAGAAACUGUAAACUUAGUC |32
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1439702395 3 dbSNP
rs973468045 19 dbSNP
rs1474855764 20 dbSNP
rs183845458 20 dbSNP
Putative Targets

Gene Information
Gene Symbol CCNG1   
Synonyms CCNG
Description cyclin G1
Transcript NM_004060   
Other Transcripts NM_199246   
Expression
Putative miRNA Targets on CCNG1
3'UTR of CCNG1
(miRNA target sites are highlighted)		 
>CCNG1|NM_004060|3'UTR
   1 CTGGATTATTACAGCACCAAAAAACTTCTCTGAAGCCTTTCTCCACAACCTTGTTCTATGGATTCCATAATGTTACAATG
  81 GATTTAAGCTATGAAGCCTCAAAACATCACGAGATAAGCATGATGGTCTCAGACTTGGGAAAACTGCCTAATATTATGCT
 161 GTAGTGGAATTATGTTTAGATTTGAATTCATCTGTGAAGCATTCAAATCAAAGCTAAAAGCCTAAATGTGAAATGCTAAT
 241 GACAAGCCTGAGAAGGTAAACTGTGAATCTTCATTTCTATCATTGATCTAACTTTAGATATTGGATCAATATATTTAGGT
 321 GGTATTGAAAATGCTATTGGAGGAGTCACACTAATACTATCAACTATCAGTCTTCCCACAGCTTCAATCACTGTCATTAT
 401 TCTAATCCTACTCCTACTTAAATTTTAAGTTATGAGGTTTATGTCAAAAGCAACATTTCACAAATGTACTTTTAAGGCAT
 481 AATAAGGGTTAACATTCTAGGCAGTATAAACACACCCCATAATGCAAGTAATAGGTAATCTAGAGATGTGGACTTTATTG
 561 CTATATGGGAATTACATTTAAATTTGAGGGCATTTTATATAAAGAAAAATACAGACCTATAAAGTTTGGCATATTCATTA
 641 AGTTATCTTTTAATATTTTTTTCTAGAAAACAGGTGACATTTGTATCTACGATAAAAATTTTTATACAGAACCTACTGCC
 721 TCAAACTGAATCCCATCAAGAAAACTAGTTTCTATTGTATTAGTAACTCAAAATAAATTATCACTTCGAAAACTTGCTTT
 801 CCCACACTAAGGTAAGTTCAGACTAGATTGAACACTCCAGAATTTTTTACTACAGACTGTTTTTAAGTTAGAAGTGATGG
 881 CAATTTTATAAATAGAGAATATACTTCCACTGATGCCCTTACTGTGCCAAAACAAAAATCTTAAGAAAAGCAAGTAGACA
 961 CCTTCATAACTATGAATGAAGCTGCTGAAGTAGTGTTTAGGATCCTCCATGGCAGTTAGTGAATGTAAGAAGTACAGTGT
1041 TAAAGTGTTGTAAACAGTTACTCAGTGCAATGTATAGCCTGAGTCTATCCATGATGGCTATATCCAATTTGACATCACGT
1121 TATGGATCAGTACACAATGAAAAACCAAAGAACCACAGTATATCTTATTCTTAACTTTTGTAAACCATGTTTTATGGGTA
1201 ACTTTTTAGTTTTCCCAAAAGGCTGATAAATTTCAATATTTTGAATACATCATTGTTAATTTTGAGTTGGCAGAGGTAAA
1281 CTAACCAACTACCATTATGTTTTAGTACTAAGGGATATACCTTTCAATAAAGTTAATGAAATTCAAAAAAAAAAAAAAAA
1361 AA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cugaUUCAAAUG-UCAAAGAUcc 5'
              |||   || ||||||||  
Target 5' catcAAGAAAACTAGTTTCTAtt 3'
 734 - 756 138.00 -6.70
2 
miRNA  3' cugAUU--CAAAUGUCAAAGAUCc 5'
             |||  ||| |||  |||||| 
Target 5' taaTAAGGGTTAACA--TTCTAGg 3'
 480 - 501 136.00 -12.30
3 
miRNA  3' cuGAUUC-AAAUGUC-----AAAGAUCc 5'
            | | | ||||::|     |||:||| 
Target 5' aaCCATGTTTTATGGGTAACTTTTTAGt 3'
 1183 - 1210 136.00 -5.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN22802298 478 COSMIC
COSN28186572 1091 COSMIC
COSN24404698 1130 COSMIC
COSN2083019 1138 COSMIC
COSN16641068 1279 COSMIC
COSN31579430 1324 COSMIC
COSN31551797 1410 COSMIC
COSN26636791 1439 COSMIC
COSN9931419 1446 COSMIC
COSN31608013 1675 COSMIC
COSN28067905 1768 COSMIC
COSN31528003 1893 COSMIC
COSN31566152 1894 COSMIC
COSN31601089 1914 COSMIC
COSN31566627 2144 COSMIC
COSN31483591 2217 COSMIC
COSN20983069 2379 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1159356788 5 dbSNP
rs1387345244 6 dbSNP
rs866178200 6 dbSNP
rs1017722573 16 dbSNP
rs146472121 17 dbSNP
rs767507276 17 dbSNP
rs1399175673 18 dbSNP
rs773896011 22 dbSNP
rs1230235527 23 dbSNP
rs759171679 25 dbSNP
rs373723183 26 dbSNP
rs1047210367 29 dbSNP
rs1301932098 30 dbSNP
rs1329996791 32 dbSNP
rs1398080415 34 dbSNP
rs752293307 36 dbSNP
rs1261987920 44 dbSNP
rs760459789 47 dbSNP
rs763817081 48 dbSNP
rs1447430671 50 dbSNP
rs1005794435 55 dbSNP
rs1347603243 66 dbSNP
rs982725811 76 dbSNP
rs1023882958 92 dbSNP
rs1419036550 93 dbSNP
rs1170361223 101 dbSNP
rs908427300 105 dbSNP
rs1266039160 106 dbSNP
rs941049572 116 dbSNP
rs1358451901 121 dbSNP
rs1488236843 131 dbSNP
rs1245043566 134 dbSNP
rs1399258038 139 dbSNP
rs2069356 144 dbSNP
rs1341162702 147 dbSNP
rs1216620774 152 dbSNP
rs926402084 155 dbSNP
rs1384015143 163 dbSNP
rs1001124539 166 dbSNP
rs1278836551 174 dbSNP
rs1218557308 182 dbSNP
rs1299341773 184 dbSNP
rs1294707594 195 dbSNP
rs1436790110 199 dbSNP
rs1035330048 209 dbSNP
rs959792189 210 dbSNP
rs988987869 211 dbSNP
rs1020101213 214 dbSNP
rs1426229038 216 dbSNP
rs145304923 218 dbSNP
rs1234317799 220 dbSNP
rs1258080082 221 dbSNP
rs968989904 221 dbSNP
rs1351971572 223 dbSNP
rs1216473848 225 dbSNP
rs978673065 241 dbSNP
rs532214629 247 dbSNP
rs17881803 249 dbSNP
rs1458966863 261 dbSNP
rs1251611520 264 dbSNP
rs1209339428 275 dbSNP
rs942600421 276 dbSNP
rs976726786 284 dbSNP
rs896645983 285 dbSNP
rs922622284 287 dbSNP
rs1219354238 288 dbSNP
rs761146067 288 dbSNP
rs1306714912 289 dbSNP
rs535525236 289 dbSNP
rs567143917 297 dbSNP
rs2069357 300 dbSNP
rs1466010350 302 dbSNP
rs1357885473 311 dbSNP
rs1266136151 312 dbSNP
rs116208158 316 dbSNP
rs1379748023 317 dbSNP
rs1017604697 321 dbSNP
rs1200565360 324 dbSNP
rs1378178614 326 dbSNP
rs1418895641 328 dbSNP
rs1199614304 330 dbSNP
rs900608430 331 dbSNP
rs1159122416 333 dbSNP
rs1211505530 343 dbSNP
rs1362352469 344 dbSNP
rs190782335 363 dbSNP
rs1352417692 364 dbSNP
rs1283190899 369 dbSNP
rs941488637 370 dbSNP
rs1456364748 372 dbSNP
rs1489294167 374 dbSNP
rs538099031 376 dbSNP
rs1308192878 384 dbSNP
rs1395862970 385 dbSNP
rs1045219252 391 dbSNP
rs1291848404 395 dbSNP
rs1305168749 398 dbSNP
rs1435817529 403 dbSNP
rs1359980635 416 dbSNP
rs772230207 425 dbSNP
rs1003767116 428 dbSNP
rs1387504480 443 dbSNP
rs556609351 448 dbSNP
rs955236967 452 dbSNP
rs577723192 456 dbSNP
rs1421907350 465 dbSNP
rs544953545 467 dbSNP
rs2069358 468 dbSNP
rs1260455658 469 dbSNP
rs1009978922 474 dbSNP
rs1375084887 479 dbSNP
rs962587890 483 dbSNP
rs1264536198 484 dbSNP
rs572767045 498 dbSNP
rs1310502509 506 dbSNP
rs1320302940 508 dbSNP
rs1319245711 511 dbSNP
rs540504264 512 dbSNP
rs1415970344 513 dbSNP
rs926287671 516 dbSNP
rs561882065 517 dbSNP
rs991932467 518 dbSNP
rs978556991 520 dbSNP
rs1018133415 521 dbSNP
rs1456530346 528 dbSNP
rs1369984045 530 dbSNP
rs980709155 532 dbSNP
rs1477470288 541 dbSNP
rs1235998676 549 dbSNP
rs917619881 550 dbSNP
rs1178985701 552 dbSNP
rs418358 556 dbSNP
rs386694408 560 dbSNP
rs62394890 561 dbSNP
rs426308 563 dbSNP
rs1317644499 570 dbSNP
rs2069359 572 dbSNP
rs1458495299 573 dbSNP
rs1328064402 578 dbSNP
rs1322897611 579 dbSNP
rs1398340093 581 dbSNP
rs1396905566 585 dbSNP
rs1326806679 600 dbSNP
rs867714446 601 dbSNP
rs11740842 602 dbSNP
rs963939741 603 dbSNP
rs1039094812 606 dbSNP
rs1332441422 608 dbSNP
rs2069360 609 dbSNP
rs1227037694 610 dbSNP
rs1312673777 611 dbSNP
rs551363419 612 dbSNP
rs2069361 616 dbSNP
rs982807560 617 dbSNP
rs1253283012 618 dbSNP
rs1197620586 626 dbSNP
rs527314867 628 dbSNP
rs941463033 630 dbSNP
rs1340628816 632 dbSNP
rs1239704963 636 dbSNP
rs1231225612 639 dbSNP
rs1482173200 639 dbSNP
rs1397850030 640 dbSNP
rs1412668956 640 dbSNP
rs1330589884 641 dbSNP
rs1045184856 642 dbSNP
rs1410483010 644 dbSNP
rs1401468522 647 dbSNP
rs766933142 652 dbSNP
rs2069362 664 dbSNP
rs1177641302 665 dbSNP
rs1414417880 672 dbSNP
rs939589405 673 dbSNP
rs299321 678 dbSNP
rs2069363 679 dbSNP
rs1010278567 680 dbSNP
rs1019955494 692 dbSNP
rs765176854 693 dbSNP
rs1171657579 696 dbSNP
rs999970429 702 dbSNP
rs375134030 703 dbSNP
rs1302679564 704 dbSNP
rs1033981986 705 dbSNP
rs1339649607 705 dbSNP
rs959074325 706 dbSNP
rs571378148 710 dbSNP
rs546294526 711 dbSNP
rs1157489285 713 dbSNP
rs998100616 714 dbSNP
rs992213949 720 dbSNP
rs1275697452 726 dbSNP
rs1316758708 727 dbSNP
rs565891313 729 dbSNP
rs1274709089 733 dbSNP
rs1310126337 735 dbSNP
rs1186049933 738 dbSNP
rs1209127460 742 dbSNP
rs1216042851 743 dbSNP
rs1237910619 745 dbSNP
rs1486604828 746 dbSNP
rs1224528224 747 dbSNP
rs1286689942 747 dbSNP
rs1297482222 747 dbSNP
rs1346454715 747 dbSNP
rs1355961285 747 dbSNP
rs1397640892 747 dbSNP
rs1416579391 747 dbSNP
rs35396845 747 dbSNP
rs1029956891 749 dbSNP
rs77154908 750 dbSNP
rs1477553923 751 dbSNP
rs966437354 755 dbSNP
rs1421882651 757 dbSNP
rs1163160927 758 dbSNP
rs1476376896 759 dbSNP
rs553883852 760 dbSNP
rs983161229 761 dbSNP
rs1193567198 762 dbSNP
rs369945382 764 dbSNP
rs1036406357 765 dbSNP
rs925440318 765 dbSNP
rs909904462 766 dbSNP
rs1287498573 768 dbSNP
rs1234960373 770 dbSNP
rs962748659 772 dbSNP
rs1437055215 773 dbSNP
rs919019217 774 dbSNP
rs980848296 775 dbSNP
rs1216713451 791 dbSNP
rs926784462 796 dbSNP
rs1288898498 797 dbSNP
rs1435329124 798 dbSNP
rs182432020 798 dbSNP
rs542697608 803 dbSNP
rs34378390 808 dbSNP
rs1347805302 818 dbSNP
rs939559596 821 dbSNP
rs1327462273 826 dbSNP
rs1463404994 827 dbSNP
rs1395652446 836 dbSNP
rs1056637495 838 dbSNP
rs1170609911 842 dbSNP
rs936941386 849 dbSNP
rs772982129 855 dbSNP
rs1400061410 859 dbSNP
rs1421781906 864 dbSNP
rs1187134997 870 dbSNP
rs1477728137 879 dbSNP
rs375228155 879 dbSNP
rs2069364 883 dbSNP
rs1215786953 889 dbSNP
rs1468796033 895 dbSNP
rs1365047597 902 dbSNP
rs922152775 912 dbSNP
rs2069365 921 dbSNP
rs144016678 923 dbSNP
rs1041752723 924 dbSNP
rs1305251610 924 dbSNP
rs567560390 928 dbSNP
rs1004918056 929 dbSNP
rs999939017 941 dbSNP
rs1395676495 953 dbSNP
rs1214306997 955 dbSNP
rs1460938778 959 dbSNP
rs1356843760 960 dbSNP
rs1036858345 970 dbSNP
rs1285248944 977 dbSNP
rs1039513267 981 dbSNP
rs1195751839 988 dbSNP
rs1454826496 989 dbSNP
rs1237362638 990 dbSNP
rs17881666 992 dbSNP
rs1193948677 998 dbSNP
rs1481473127 1000 dbSNP
rs1251884495 1005 dbSNP
rs1209317680 1006 dbSNP
rs533200121 1014 dbSNP
rs1345135295 1015 dbSNP
rs995263436 1025 dbSNP
rs997987658 1026 dbSNP
rs2069366 1027 dbSNP
rs1375634149 1030 dbSNP
rs758692122 1039 dbSNP
rs951352955 1041 dbSNP
rs1306602977 1044 dbSNP
rs1390069124 1050 dbSNP
rs1375979883 1052 dbSNP
rs1299304701 1056 dbSNP
rs1273558465 1065 dbSNP
rs2069367 1066 dbSNP
rs1211739643 1069 dbSNP
rs1373718669 1074 dbSNP
rs1266661507 1081 dbSNP
rs576642275 1083 dbSNP
rs1182538343 1087 dbSNP
rs1365641422 1088 dbSNP
rs1435389570 1092 dbSNP
rs1229234086 1094 dbSNP
rs1157186035 1109 dbSNP
rs1471707461 1109 dbSNP
rs1158774005 1110 dbSNP
rs1181212066 1119 dbSNP
rs1395635271 1128 dbSNP
rs760879982 1130 dbSNP
rs867994245 1131 dbSNP
rs962717622 1138 dbSNP
rs980817794 1139 dbSNP
rs1013284298 1142 dbSNP
rs1025044288 1143 dbSNP
rs1352295733 1147 dbSNP
rs1392511481 1150 dbSNP
rs926670034 1154 dbSNP
rs2069368 1156 dbSNP
rs548708771 1160 dbSNP
rs1333527361 1164 dbSNP
rs766545484 1165 dbSNP
rs992706892 1166 dbSNP
rs1336654028 1167 dbSNP
rs1231161046 1173 dbSNP
rs1319123414 1175 dbSNP
rs751747655 1178 dbSNP
rs1437839527 1181 dbSNP
rs1480897631 1182 dbSNP
rs1197510445 1184 dbSNP
rs1235371464 1185 dbSNP
rs914091666 1186 dbSNP
rs766343551 1188 dbSNP
rs191618240 1198 dbSNP
rs1359963149 1203 dbSNP
rs1287347396 1216 dbSNP
rs565093529 1217 dbSNP
rs925608643 1231 dbSNP
rs1474090876 1236 dbSNP
rs935614299 1243 dbSNP
rs1032061398 1250 dbSNP
rs958210827 1251 dbSNP
rs1258990311 1254 dbSNP
rs1206535614 1260 dbSNP
rs1039397240 1261 dbSNP
rs550314620 1263 dbSNP
rs1485969950 1264 dbSNP
rs1261707219 1265 dbSNP
rs571492146 1269 dbSNP
rs899555959 1273 dbSNP
rs997966972 1283 dbSNP
rs1237660922 1285 dbSNP
rs538874609 1289 dbSNP
rs1295712359 1310 dbSNP
rs751080292 1321 dbSNP
rs1354317569 1329 dbSNP
rs547476702 1336 dbSNP
rs987526549 1341 dbSNP
rs1004527203 1345 dbSNP
rs746775628 1358 dbSNP
rs1384157969 1361 dbSNP
rs759039482 1364 dbSNP
rs940659906 1369 dbSNP
rs1459742185 1370 dbSNP
rs1037754610 1379 dbSNP
rs1165583424 1379 dbSNP
rs1477418165 1383 dbSNP
rs1194640585 1385 dbSNP
rs898419201 1386 dbSNP
rs1002125349 1388 dbSNP
rs1253847014 1394 dbSNP
rs767105467 1405 dbSNP
rs1211419178 1406 dbSNP
rs960754561 1410 dbSNP
rs2069369 1415 dbSNP
rs931164033 1418 dbSNP
rs1055356076 1422 dbSNP
rs1250103173 1424 dbSNP
rs1229756775 1429 dbSNP
rs1455781755 1439 dbSNP
rs1303027257 1442 dbSNP
rs1438909957 1443 dbSNP
rs1177156176 1444 dbSNP
rs1326292771 1449 dbSNP
rs1465063467 1462 dbSNP
rs992278729 1463 dbSNP
rs1169570764 1465 dbSNP
rs1462113827 1476 dbSNP
rs766423181 1486 dbSNP
rs1191378404 1488 dbSNP
rs754546531 1493 dbSNP
rs1455268834 1496 dbSNP
rs895087859 1498 dbSNP
rs1194698907 1511 dbSNP
rs1013918775 1525 dbSNP
rs1380137808 1529 dbSNP
rs1470766309 1530 dbSNP
rs1340156756 1539 dbSNP
rs1279622793 1547 dbSNP
rs1160805626 1568 dbSNP
rs1232395466 1571 dbSNP
rs1231832067 1572 dbSNP
rs565847062 1586 dbSNP
rs1021533521 1593 dbSNP
rs1410937208 1599 dbSNP
rs1404266020 1600 dbSNP
rs1441290137 1612 dbSNP
rs2291790 1615 dbSNP
rs980013359 1628 dbSNP
rs1391842333 1639 dbSNP
rs149348306 1640 dbSNP
rs943617302 1662 dbSNP
rs1032106676 1681 dbSNP
rs1444205555 1682 dbSNP
rs1330405788 1688 dbSNP
rs1470005955 1694 dbSNP
rs1377377682 1701 dbSNP
rs1231467619 1706 dbSNP
rs1184616423 1711 dbSNP
rs1438847834 1719 dbSNP
rs756560845 1723 dbSNP
rs957761278 1725 dbSNP
rs1486679435 1726 dbSNP
rs371481198 1732 dbSNP
rs1348295575 1734 dbSNP
rs1282380664 1735 dbSNP
rs376581128 1735 dbSNP
rs1355619120 1737 dbSNP
rs574467199 1743 dbSNP
rs1239722671 1745 dbSNP
rs1273968273 1750 dbSNP
rs1354788431 1750 dbSNP
rs1029570505 1752 dbSNP
rs17883523 1753 dbSNP
rs1237886526 1760 dbSNP
rs1317201429 1761 dbSNP
rs1438783709 1765 dbSNP
rs1050896730 1768 dbSNP
rs1406265449 1772 dbSNP
rs1160613571 1780 dbSNP
rs955015812 1782 dbSNP
rs1236203713 1783 dbSNP
rs1417831781 1784 dbSNP
rs988134922 1796 dbSNP
rs754246739 1797 dbSNP
rs1165003747 1803 dbSNP
rs908093092 1810 dbSNP
rs1419462170 1817 dbSNP
rs537736408 1826 dbSNP
rs886937533 1828 dbSNP
rs757742297 1830 dbSNP
rs973349574 1841 dbSNP
rs1286572652 1844 dbSNP
rs1205552345 1847 dbSNP
rs1463681303 1851 dbSNP
rs1169520265 1852 dbSNP
rs1333871794 1858 dbSNP
rs939829571 1858 dbSNP
rs1396884561 1862 dbSNP
rs920709878 1873 dbSNP
rs1392898381 1881 dbSNP
rs1355555181 1885 dbSNP
rs1269028025 1889 dbSNP
rs188233605 1893 dbSNP
rs898388260 1894 dbSNP
rs1055005899 1912 dbSNP
rs894964538 1913 dbSNP
rs193188036 1918 dbSNP
rs545261408 1921 dbSNP
rs1163422646 1934 dbSNP
rs1476447043 1940 dbSNP
rs1414667875 1946 dbSNP
rs949214090 1948 dbSNP
rs1046747597 1954 dbSNP
rs1244114500 1954 dbSNP
rs1033622254 1956 dbSNP
rs1194163447 1958 dbSNP
rs1467872115 1965 dbSNP
rs902401376 1965 dbSNP
rs1215507751 1978 dbSNP
rs1335347959 1982 dbSNP
rs1315292227 1996 dbSNP
rs185471595 2002 dbSNP
rs1272162753 2007 dbSNP
rs1293927504 2008 dbSNP
rs1337049848 2010 dbSNP
rs1270419245 2021 dbSNP
rs1370751057 2033 dbSNP
rs999220016 2033 dbSNP
rs1216990011 2048 dbSNP
rs896519936 2052 dbSNP
rs1170345176 2053 dbSNP
rs1014085108 2056 dbSNP
rs1189470073 2062 dbSNP
rs1197888481 2067 dbSNP
rs1277031750 2068 dbSNP
rs1442336689 2080 dbSNP
rs1189283718 2082 dbSNP
rs1020999567 2083 dbSNP
rs967204973 2086 dbSNP
rs369896651 2091 dbSNP
rs571921717 2092 dbSNP
rs1028705124 2096 dbSNP
rs1202346757 2110 dbSNP
rs1308766644 2113 dbSNP
rs955046302 2114 dbSNP
rs1233154189 2116 dbSNP
rs560246257 2121 dbSNP
rs1015145022 2123 dbSNP
rs962258420 2127 dbSNP
rs1298109171 2131 dbSNP
rs1368743076 2131 dbSNP
rs1440571257 2150 dbSNP
rs17883275 2154 dbSNP
rs1356375356 2165 dbSNP
rs1463262977 2169 dbSNP
rs1434148884 2173 dbSNP
rs973401967 2174 dbSNP
rs1175739515 2178 dbSNP
rs779450810 2189 dbSNP
rs572046790 2193 dbSNP
rs12657994 2197 dbSNP
rs1406907166 2201 dbSNP
rs1401255218 2207 dbSNP
rs958852779 2217 dbSNP
rs975023210 2222 dbSNP
rs920921860 2224 dbSNP
rs190798116 2225 dbSNP
rs986873915 2228 dbSNP
rs1282101142 2235 dbSNP
rs112172238 2241 dbSNP
rs1313164838 2243 dbSNP
rs923877142 2249 dbSNP
rs1398201802 2259 dbSNP
rs908250717 2260 dbSNP
rs1376214439 2263 dbSNP
rs192535026 2271 dbSNP
rs1373701189 2275 dbSNP
rs756949850 2277 dbSNP
rs1315006621 2284 dbSNP
rs1804633 2290 dbSNP
rs1053481657 2306 dbSNP
rs1327240177 2312 dbSNP
rs565278287 2315 dbSNP
rs1229964311 2327 dbSNP
rs1038144142 2334 dbSNP
rs1420635880 2341 dbSNP
rs893481582 2347 dbSNP
rs898357254 2355 dbSNP
rs1254571653 2358 dbSNP
rs532529210 2359 dbSNP
rs534968287 2375 dbSNP
rs547589899 2381 dbSNP
rs1258934994 2382 dbSNP
rs1200697051 2384 dbSNP
rs1050616118 2391 dbSNP
rs1055006009 2416 dbSNP
rs1212171520 2419 dbSNP
rs896397036 2420 dbSNP
rs1214151788 2436 dbSNP
rs1013554593 2452 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 900.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000340828.2 | 3UTR | UAUCUUUUAAUAUUUUUUUCUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
68 hsa-miR-8067 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT084581 BCL2L11 BCL2 like 11 2 4
MIRT088215 NUP50 nucleoporin 50 2 2
MIRT092085 ABHD5 abhydrolase domain containing 5 2 2
MIRT135269 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 8
MIRT175259 PSAT1 phosphoserine aminotransferase 1 2 6
MIRT182508 KLHL20 kelch like family member 20 2 2
MIRT286224 TMEM97 transmembrane protein 97 2 4
MIRT301718 TEF TEF, PAR bZIP transcription factor 2 2
MIRT329381 CCNG1 cyclin G1 2 2
MIRT362146 MTRNR2L6 MT-RNR2-like 6 2 4
MIRT366561 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT442002 NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 2 2
MIRT442039 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT443045 HPS4 HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 2 2
MIRT446861 SAMD9L sterile alpha motif domain containing 9 like 2 2
MIRT450346 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT454306 ZNF134 zinc finger protein 134 2 2
MIRT481951 ANKRD11 ankyrin repeat domain 11 2 2
MIRT484816 ZNFX1 zinc finger NFX1-type containing 1 2 2
MIRT497596 EBAG9 estrogen receptor binding site associated, antigen, 9 2 2
MIRT498620 MTRNR2L10 MT-RNR2-like 10 2 12
MIRT501852 MTRNR2L8 MT-RNR2-like 8 2 15
MIRT502628 DDX3X DEAD-box helicase 3, X-linked 2 8
MIRT503298 GTF2A1 general transcription factor IIA subunit 1 2 6
MIRT506789 KLHL15 kelch like family member 15 2 6
MIRT515069 PLA2G2C phospholipase A2 group IIC 2 2
MIRT521334 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT523692 FHL2 four and a half LIM domains 2 2 4
MIRT524416 CNOT6L CCR4-NOT transcription complex subunit 6 like 2 4
MIRT525526 FSIP2 fibrous sheath interacting protein 2 2 2
MIRT525771 SOD2 superoxide dismutase 2 2 2
MIRT526262 CCDC169 coiled-coil domain containing 169 2 2
MIRT526545 MDM2 MDM2 proto-oncogene 2 2
MIRT527522 CD59 CD59 molecule (CD59 blood group) 2 2
MIRT530875 TRUB1 TruB pseudouridine synthase family member 1 2 4
MIRT532991 ZKSCAN8 zinc finger with KRAB and SCAN domains 8 2 2
MIRT535581 NUP35 nucleoporin 35 2 2
MIRT536922 HEPHL1 hephaestin like 1 2 2
MIRT540004 NT5DC3 5'-nucleotidase domain containing 3 2 2
MIRT540779 SCO1 SCO1, cytochrome c oxidase assembly protein 2 2
MIRT541006 ZNF136 zinc finger protein 136 2 2
MIRT542072 ASS1 argininosuccinate synthase 1 2 6
MIRT544103 IPMK inositol polyphosphate multikinase 2 2
MIRT547669 KPNA1 karyopherin subunit alpha 1 2 4
MIRT549914 MRPS30 mitochondrial ribosomal protein S30 2 2
MIRT551741 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT556374 LUZP1 leucine zipper protein 1 2 2
MIRT557320 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT561442 TOB2 transducer of ERBB2, 2 2 2
MIRT563938 TAF7 TATA-box binding protein associated factor 7 2 2
MIRT622315 SEH1L SEH1 like nucleoporin 2 2
MIRT622334 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT627928 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT636122 YPEL1 yippee like 1 2 2
MIRT644871 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT645105 LANCL3 LanC like 3 2 2
MIRT650430 BBS9 Bardet-Biedl syndrome 9 2 2
MIRT653330 SMIM18 small integral membrane protein 18 2 2
MIRT658101 FOXN3 forkhead box N3 2 2
MIRT690032 CCDC90B coiled-coil domain containing 90B 2 2
MIRT697283 ZNF800 zinc finger protein 800 2 2
MIRT700266 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT700310 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT705431 ATP11A ATPase phospholipid transporting 11A 2 2
MIRT706193 MED24 mediator complex subunit 24 2 2
MIRT707928 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT716123 RPL24 ribosomal protein L24 2 2
MIRT720940 PPP1R3E protein phosphatase 1 regulatory subunit 3E 2 2

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