miRTarBase - #MIRT329432


—
pre-miRNA Information
pre-miRNA hsa-mir-3170   
Genomic Coordinates chr13: 98208524 - 98208600
Description Homo sapiens miR-3170 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3170
Sequence 10| CUGGGGUUCUGAGACAGACAGU |31
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1393550535 3 dbSNP
rs1477436820 6 dbSNP
rs1291786017 11 dbSNP
rs528268116 15 dbSNP
rs1425176334 18 dbSNP
rs1351740752 19 dbSNP
rs1465654929 19 dbSNP
rs147240207 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol C5orf51   
Synonyms -
Description chromosome 5 open reading frame 51
Transcript NM_175921   
Expression
Putative miRNA Targets on C5orf51
3'UTR of C5orf51
(miRNA target sites are highlighted)		 
>C5orf51|NM_175921|3'UTR
   1 TAAGTTCATCTAGTCCTTTTCAAATAGAAAAACAACAAAACCCATGAAATGGAAAAGAGAGTTCCAAAAAAGAAGACCTG
  81 TTGATACTGAATATGAGAACATTACACTGCATAAAGATATCCAGCTTGGGTACCCTACTAAAACAACATCACCATCTTTT
 161 TCATTATATATTAGTAAACCTATGAAGGGATGATTCTTTAATTTCTAAAGTGTTGTTCAAACTCACCTTAAAATACAGAT
 241 GTTATGTCACTAATAATGAGTAGTAACCCAATTTAGCTTTACAAAGATTTTTTCTATTACTTTTTTTTTTTATTGTGGTA
 321 TATGTAACACAAGTTTACCATTTTTATCATCTTTAGATTATTTTTAAATCTCACTACCTTGAAGTTTGCCATGCTTCAGA
 401 AATTAAAGTCAAGTTACTTCACTGCTTTGAATACATACTATGGATATAAATGTAGGCAAAATGAAAGATTATGACTAATA
 481 TTCAGATTCCATTTTCAATAAGGTAAATAATGAAAGATCTCACAAAGGAATCATTGTGTTTAATTATTTTGCCATGTATT
 561 ACTAATTGTATTTAAAATTTCTACTTCCCTTAGGCATTTTATAAAAATTTAAAAATTATTTTTCTATTTTGTTTAAAAGA
 641 CAATGCATGGCTTTTCAAGTGAGTAATGAAGATAAAAACCAAGCTAGGTTAGTCTACCATTAGTTCATATGTTTTTGTAG
 721 CACATCTTTTCATAACATACTGAAATTTTAATGTTTTTTGCCTTTAATAATAGGGGTGAGTGTTAAAGGCCAGAGAGCCT
 801 AACTTGATATCTTGCTCATGGTCTTTCTGTCTACCTCAACTCCTGTTGTCATCTTTGGATGATCTTTCTGATACCTTGCT
 881 GATACCTTGGACTTCTGCCCAGTGACTTTATTACATTCCAGCAGCTTACTCCCGTGGCCGCACTTTGAATGTCACCACCT
 961 TGAGTTTCTCTTTCTGGTAAAATTTCAGTAACTGATAACTGCCCTCTTTTCAGTTTTTTCACTTCCTTATTTTATTGACT
1041 TTTCTCTCCTTTATGCTCATTCCACATTCTTCAGTTCCTTCTTACCCCCTTTTCTTGACTGCTCCCCTTCCTCCTAAACT
1121 GTCAGCCCCTTTCAGGCTTTCTTCCCTATCCACCCTCAGCTTTATGGGATACTATATGAACTAATCTCACCAGTTATTCT
1201 TCTTTCCCTGGTCTTTTAGTCTAGTCCTTTGGCAAGCCCTCAACCTCAGATTAATCCTATTTATTATCTACCTTTTCGGG
1281 GATGCTGAGTTCTTTGTGATGGGTAGTCCTTCAAAGTAGAATCACTACAAGTGTCTCACTTCAGCCTTAGAAAAGCCCTC
1361 AATGTAAACCTTATGTTTGTTACTAGGGTGGCCTCTCTCCCATTTCCCGCTGTGGCTGAGCCAAACTTCATTACTTTCCT
1441 TAGGCCCTCTGCCCCTCCCCTAGCATATGGCTCTTTCTCCTATTGAACAGAAAATTGAGACTATGAAGAGGTCAACTTGT
1521 ATTTACCAACTTTACTCATTTTCCCATTTTAGAGGAAAAGAGGTTGCCTGCTTCCTATCAAAGGCGACTCTGTGCTACAT
1601 GTTGGTTTCATCTTCGCTGTCTCTCTCATTTCCCCACAAAGTGTTGTCTCACTTTCTGCCTACCTTTTAGGTATTGATCT
1681 TCACTATATTTTTTTCTCTCTCTCTCTTTTTTTTTTTTACTTTACATATTTTATACAATGTCATTCATAACTATGGCTTC
1761 TTTTACCACCTGTAATAACAGACTGAGTCTCAAACCTGTAACTTGTATCCTGACTTATCTCTTGCTTTCTAAACCTTGTT
1841 TCTAACTGTCTATCAAATATCTTCATTAGACATCCCACAGTAATTTTAAGCTCAGTGTTTCCAAACGTCAAGTCCTCATC
1921 TGTTATATAAAATCCTTTCTGCTTTGTAAGTTTTCTCTTTTTGGGATTTTCCGCAGATCAGGGCAACACAGAATGACTAC
2001 CTTCCCAGCCATGTCTCTGCAGTCATCCTGTGTAATCATGTTCTAGTCCAGTGTTGCTCAAACAGTTAAAATCCAGGCTG
2081 CTTTTGGTAAACATACAAATTCTGATATAGAGCCTCTGTGGCAAAGGGAATTTCTCAGTTCCTGCCCCAGCCCCCTTGTT
2161 TATCATTACACAGCTAAGATTTTTATTTAACTTAGCATTTTAGCAAGTTTTCTTATGAAAATACCTTTGTGCTTTCTAAG
2241 TATAAAGATTTAAATTATTTTTAATACGGTTTTTAGAACCACAGACTATCCCTCTTTTTAGAGCATCCTGATCAATTGCA
2321 AGTACTTCCACTTCTTCCCTAAATGCGCTTTGTGTGTTTTCCACCTCAGTAGCCTTGCACACATCATTACTTCTGCATCC
2401 TTCTTTGTGACCAAGTGAATACCTACCTACCTCTTAGGACTCAGCTTCAGTGATTCTGTTTTCATAGGCTTTTTAAAGCC
2481 CTTTTCAGTCAAATTAGATGCTCCTTTGTTCTGGTCCTTTACTCTTCCCCTCCCATGTTGTCGCACTGATCACACTGCTT
2561 TGTAATTATTTTCTTTATTGTTGGTAAACTCCATATTTTAAAAATTTACCTGTATACATAGTGCTTAATGCATGGTAGGC
2641 CCTTAGTAATGTTTTTGAATTAATGAGGCATGATTCTAAATGCCAAACTTTGCACAAAAAGTTGTTGCTATTGGATTCCA
2721 AACTGCTATGCCCTCTATACCAGTGGCTGACAAGGCATATAGGGATATATGCCATCCTGAGAGGAGTAAAGTGTTTAGAT
2801 TCTGAACCTGAGAAAAGAGAACTTTCTCTTAAGAAGTTGGAAACTTCATTTTACCTTCGTGACCCTGGTAGACCACTTGG
2881 TCTCACTGGTTGGTACAATTATGAGGGTAGTACTGGGTGCTTTTTATACAACTTTCCATCCCCCACACAGTTGGAGAATA
2961 ATTTGTAGACCATGGCAGTTAAAATGCTTTTTACTCTGGTGTATTATAGAATAATGAACACATTTTTATATATGTTAAAG
3041 CCTGCTAAATCATTCACTTAGAATGAAGTAACCTCAAGGTACCAAATACCCCACATAAGGAAAGTACTACACTAAATTCA
3121 CTCAACTATTGTATGCCTACCATATGCCAGATTTTATCCTAGACCCTGAGGATATAGCTTTTTAAAACCCCCTCCTGTTT
3201 CAGAGCTTATATTCTAGTGGAGGAAGTTAGACAAGCATTTTAAGTAATAAATGTATAGAGAGTGTCAAGTGATGAGTACC
3281 ATGAAGAAGAATAAATGAGGGTAAGGGGCTAGTGTGATAGGGAGAGGGGTGGGATGCCATCATATTTAGGGGTGGTTGGG
3361 AACTGTCTACTGCTTTAGCATTTGTGTCTTCAAATTTCTCTCCTTTGGTTATATACCTTGCGTATTCCGCACATTGATAA
3441 AGTTTCTTTCTTACAGAAGTTCTGATATTGAATTAAGGAATGGGTCACTACTTAAGACTTTATCATTTCAGCTACACATA
3521 AAAGGTTTCTCTCCCCTATGGATTTTGCTAATGGTTGAGTGATACCTAAAGGCCTTGTTGCATTTTTTACACTTGGGGTT
3601 TCTCTTCGGTTTGAATTCTCTCATGGTTACCAAAACTCTGTTAAAGGACTTTTCACAGTCGTTAAATGTGTATGGCTCTT
3681 TCCCAATATGAATTTTTTTGATGTTAACTAGGCTTTTAGACTTAGTTAAAGACCTGTGTGCTCTGCTGCATTTATAGGGT
3761 TTTGGGCTGCTGAGAATAATTGATGCTGATTAAGGTGCAAATCATGACTAAAGACTTTTCTTTCTTCTTTTGCATATAGT
3841 AGAGTGAGGTGAGGGTCGTGGCTAAAACCCCACAATAACTTTACATTCCTAGCTTTACAGTCTTGCTGTGAATTCTCTGG
3921 TGTTCATTAAAGTGTGAGCTGTGTTAAAAGGCATTCTTAGATTCATTTTAACCACATTTTTAAAAACTCACAGTTGGTTA
4001 ACATGATGGTTTCAGATTGCTTGCCTCTTTTCTCTTTCTACCTTACAGGGCTCCTTTTCTAGCTTAAATAAGGGTACTCC
4081 ATCTGCCACAGAATCCAGGATTCTATAGTTTTTTAGTTTCACTTCCCTATGTTCTTTTTTTTTTTTTAATTTTTAACAAT
4161 GAGATGATACCATGTTACAGCGGTATTACATTAAGATACATTTAATATAGCCACAATTAAAGTATGTATTATGTATTTAT
4241 GCTGGTGTTCTTTCATGTTATTTCTTCTAGTGAAAATTTCCAAGTAAACTGTTATTGAGCATATACATTTTTAAAAAAAT
4321 AAAACCATACACCCCTAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ugaCAG-ACAGAGUCUUGGGGUc 5'
             ||| || || | ||||||| 
Target 5' aggGTCGTGGCT-AAAACCCCAc 3'
 3852 - 3873 158.00 -15.00
2 
miRNA  3' ugacaGACAGAGUCUUGGGGuc 5'
               || |:|:| ||||||  
Target 5' tatagCT-TTTTAAAACCCCct 3'
 3173 - 3193 136.00 -10.90
3 
miRNA  3' ugACAGACAG-AGUC--UUGGGGUc 5'
            | |:| |: |::|  |||:||| 
Target 5' ttTCTTTATTGTTGGTAAACTCCAt 3'
 2570 - 2594 134.00 -9.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30502564 29 COSMIC
COSN31492177 32 COSMIC
COSN30170495 60 COSMIC
COSN30112691 158 COSMIC
COSN6297555 240 COSMIC
COSN7942186 246 COSMIC
COSN6297556 260 COSMIC
COSN20101174 304 COSMIC
COSN27375163 312 COSMIC
COSN1316175 464 COSMIC
COSN21550992 652 COSMIC
COSN31583257 736 COSMIC
COSN26585245 761 COSMIC
COSN9951271 802 COSMIC
COSN25749291 808 COSMIC
COSN31480339 838 COSMIC
COSN28690022 920 COSMIC
COSN16156050 1058 COSMIC
COSN5605674 1174 COSMIC
COSN2106492 2320 COSMIC
COSN25349471 2336 COSMIC
COSN21735292 2471 COSMIC
COSN15151011 2877 COSMIC
COSN14945680 3429 COSMIC
COSN18723456 3683 COSMIC
COSN31552421 3735 COSMIC
COSN18723457 3872 COSMIC
COSN30161466 3911 COSMIC
COSN31524491 3994 COSMIC
COSN21375984 4016 COSMIC
COSN4849976 4111 COSMIC
COSN18723588 4148 COSMIC
COSN16566127 4150 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1186711533 1 dbSNP
rs746926407 8 dbSNP
rs757148532 11 dbSNP
rs1236398277 13 dbSNP
rs1465898424 15 dbSNP
rs1483343727 16 dbSNP
rs1183267370 17 dbSNP
rs374722484 22 dbSNP
rs745924482 24 dbSNP
rs770042531 26 dbSNP
rs1414916617 33 dbSNP
rs1468717451 37 dbSNP
rs989450204 43 dbSNP
rs775570594 49 dbSNP
rs749715864 50 dbSNP
rs768911100 52 dbSNP
rs1276996759 54 dbSNP
rs1368697423 67 dbSNP
rs950210919 69 dbSNP
rs1267081831 78 dbSNP
rs1012617759 81 dbSNP
rs1015919871 87 dbSNP
rs1044550185 110 dbSNP
rs1296623939 114 dbSNP
rs1437577580 117 dbSNP
rs963165952 121 dbSNP
rs1325310324 128 dbSNP
rs993647650 130 dbSNP
rs1397397039 134 dbSNP
rs1277050939 139 dbSNP
rs1461829208 148 dbSNP
rs1373970982 167 dbSNP
rs1331381281 168 dbSNP
rs145499229 169 dbSNP
rs927033041 170 dbSNP
rs1250680974 171 dbSNP
rs1192480320 190 dbSNP
rs1468526850 199 dbSNP
rs954662642 200 dbSNP
rs930379257 206 dbSNP
rs780140105 216 dbSNP
rs1480241279 227 dbSNP
rs111784175 236 dbSNP
rs1463691333 245 dbSNP
rs1346015224 246 dbSNP
rs1215729949 249 dbSNP
rs886094699 251 dbSNP
rs72746996 252 dbSNP
rs1478202905 256 dbSNP
rs776016005 258 dbSNP
rs111486286 262 dbSNP
rs1397782278 276 dbSNP
rs975422350 286 dbSNP
rs1422971849 288 dbSNP
rs539312466 295 dbSNP
rs545770917 298 dbSNP
rs1387216034 301 dbSNP
rs1454374275 301 dbSNP
rs201732963 301 dbSNP
rs200220094 303 dbSNP
rs1028779657 304 dbSNP
rs11405992 304 dbSNP
rs34573251 305 dbSNP
rs75553974 305 dbSNP
rs889900786 308 dbSNP
rs1484567269 312 dbSNP
rs375491494 313 dbSNP
rs1350847892 321 dbSNP
rs1000673912 322 dbSNP
rs548610582 322 dbSNP
rs1033038177 323 dbSNP
rs529880530 331 dbSNP
rs977868451 333 dbSNP
rs763382482 338 dbSNP
rs988800319 347 dbSNP
rs142594823 355 dbSNP
rs575898205 362 dbSNP
rs1352831574 367 dbSNP
rs1336883859 371 dbSNP
rs542617961 372 dbSNP
rs1287828451 377 dbSNP
rs1413393771 379 dbSNP
rs938821511 380 dbSNP
rs1313818789 384 dbSNP
rs971602259 392 dbSNP
rs1403820233 399 dbSNP
rs894753183 405 dbSNP
rs1469173662 411 dbSNP
rs1412705916 413 dbSNP
rs1184221852 422 dbSNP
rs554564083 435 dbSNP
rs796984207 439 dbSNP
rs183730203 441 dbSNP
rs1188337324 444 dbSNP
rs1282351741 451 dbSNP
rs1452038070 453 dbSNP
rs1220519247 454 dbSNP
rs1266749200 456 dbSNP
rs927439706 467 dbSNP
rs930441261 469 dbSNP
rs984931986 476 dbSNP
rs1351486728 484 dbSNP
rs1270617070 490 dbSNP
rs540359754 499 dbSNP
rs1182765294 501 dbSNP
rs907586621 512 dbSNP
rs940355366 517 dbSNP
rs1294296224 519 dbSNP
rs1039976411 528 dbSNP
rs993264768 533 dbSNP
rs1164691666 546 dbSNP
rs188522126 553 dbSNP
rs1388696692 563 dbSNP
rs901805654 567 dbSNP
rs931890769 582 dbSNP
rs890196782 584 dbSNP
rs1416986261 590 dbSNP
rs1050249688 591 dbSNP
rs903678021 592 dbSNP
rs1372741437 593 dbSNP
rs1000680739 596 dbSNP
rs1240645402 607 dbSNP
rs1033524019 610 dbSNP
rs891845205 613 dbSNP
rs772703053 616 dbSNP
rs150984820 618 dbSNP
rs1024310509 644 dbSNP
rs1211825077 648 dbSNP
rs1247084311 663 dbSNP
rs989322510 670 dbSNP
rs773968790 688 dbSNP
rs1268102419 697 dbSNP
rs1285050240 699 dbSNP
rs1365420141 704 dbSNP
rs1021582376 708 dbSNP
rs969098979 709 dbSNP
rs977547043 716 dbSNP
rs1165390279 725 dbSNP
rs1406915408 726 dbSNP
rs1417099266 732 dbSNP
rs980338017 733 dbSNP
rs1167067032 736 dbSNP
rs1226774137 754 dbSNP
rs1450332007 755 dbSNP
rs765986783 771 dbSNP
rs1343959212 775 dbSNP
rs1468090642 778 dbSNP
rs938761503 781 dbSNP
rs952333892 790 dbSNP
rs1205800051 796 dbSNP
rs1338581831 798 dbSNP
rs1436524923 798 dbSNP
rs1272777558 803 dbSNP
rs993035353 808 dbSNP
rs916075912 810 dbSNP
rs984940874 818 dbSNP
rs761700931 830 dbSNP
rs1250968479 833 dbSNP
rs1231527238 834 dbSNP
rs1369569830 835 dbSNP
rs948959487 836 dbSNP
rs1435637785 838 dbSNP
rs1327953688 841 dbSNP
rs1188982039 866 dbSNP
rs1430152592 868 dbSNP
rs1392334811 884 dbSNP
rs530832135 884 dbSNP
rs193234223 891 dbSNP
rs1453921217 896 dbSNP
rs940448101 905 dbSNP
rs868621401 913 dbSNP
rs898850504 914 dbSNP
rs928990903 915 dbSNP
rs922926985 920 dbSNP
rs745483396 925 dbSNP
rs931923129 926 dbSNP
rs1484237771 933 dbSNP
rs1050322416 934 dbSNP
rs753521167 935 dbSNP
rs925195204 940 dbSNP
rs1392418420 941 dbSNP
rs370149155 951 dbSNP
rs1301368275 964 dbSNP
rs936509889 965 dbSNP
rs1052236358 974 dbSNP
rs184097064 980 dbSNP
rs1410253746 987 dbSNP
rs1010313978 991 dbSNP
rs1045792918 993 dbSNP
rs1397912441 1020 dbSNP
rs1434366987 1020 dbSNP
rs1178338067 1022 dbSNP
rs530017190 1028 dbSNP
rs754754080 1036 dbSNP
rs1334954949 1044 dbSNP
rs966640832 1047 dbSNP
rs1001515724 1049 dbSNP
rs1446100983 1052 dbSNP
rs1473804529 1053 dbSNP
rs10077481 1057 dbSNP
rs1344116780 1059 dbSNP
rs1187598830 1061 dbSNP
rs960145575 1066 dbSNP
rs186632009 1068 dbSNP
rs1006837940 1077 dbSNP
rs1273877065 1083 dbSNP
rs1211703403 1089 dbSNP
rs1337340137 1090 dbSNP
rs1267485440 1103 dbSNP
rs1228957052 1115 dbSNP
rs1352218313 1116 dbSNP
rs73750418 1119 dbSNP
rs916087084 1127 dbSNP
rs970192864 1128 dbSNP
rs1278746204 1129 dbSNP
rs1441266565 1133 dbSNP
rs1181436231 1136 dbSNP
rs1249504243 1151 dbSNP
rs141112563 1158 dbSNP
rs571811401 1175 dbSNP
rs975785362 1178 dbSNP
rs72746997 1198 dbSNP
rs777917475 1203 dbSNP
rs1401603498 1204 dbSNP
rs1484662362 1208 dbSNP
rs911527356 1209 dbSNP
rs985726722 1212 dbSNP
rs925194227 1214 dbSNP
rs1322881555 1224 dbSNP
rs1243874676 1225 dbSNP
rs1322066685 1227 dbSNP
rs1315163121 1228 dbSNP
rs1380767361 1233 dbSNP
rs936599788 1237 dbSNP
rs552611608 1245 dbSNP
rs913723963 1260 dbSNP
rs1435606136 1268 dbSNP
rs1038734661 1271 dbSNP
rs1437350565 1278 dbSNP
rs191318582 1279 dbSNP
rs1393004269 1280 dbSNP
rs766484930 1281 dbSNP
rs754347834 1282 dbSNP
rs1370589516 1304 dbSNP
rs183814334 1307 dbSNP
rs1235328498 1308 dbSNP
rs1275308300 1315 dbSNP
rs1055794623 1325 dbSNP
rs888059167 1326 dbSNP
rs868001784 1328 dbSNP
rs146780256 1337 dbSNP
rs902467961 1341 dbSNP
rs1269687265 1343 dbSNP
rs765801344 1351 dbSNP
rs1251103485 1355 dbSNP
rs999442254 1356 dbSNP
rs1015530171 1358 dbSNP
rs962254596 1359 dbSNP
rs531835112 1363 dbSNP
rs1030045985 1364 dbSNP
rs953093928 1370 dbSNP
rs1465086194 1382 dbSNP
rs1207668381 1385 dbSNP
rs959992924 1387 dbSNP
rs985800278 1389 dbSNP
rs1014368564 1393 dbSNP
rs1023028904 1395 dbSNP
rs924965121 1403 dbSNP
rs781520124 1406 dbSNP
rs796903214 1407 dbSNP
rs188633883 1409 dbSNP
rs140481152 1410 dbSNP
rs1461781629 1416 dbSNP
rs192837417 1423 dbSNP
rs1168803999 1426 dbSNP
rs1389402510 1439 dbSNP
rs558580565 1440 dbSNP
rs1197500982 1441 dbSNP
rs577276776 1446 dbSNP
rs981899866 1461 dbSNP
rs928741407 1466 dbSNP
rs937399313 1467 dbSNP
rs944346541 1468 dbSNP
rs544040879 1483 dbSNP
rs1279983372 1484 dbSNP
rs1482589165 1496 dbSNP
rs371452554 1500 dbSNP
rs562724707 1502 dbSNP
rs1388295638 1508 dbSNP
rs1301947599 1520 dbSNP
rs574624843 1522 dbSNP
rs74899984 1528 dbSNP
rs1043987246 1530 dbSNP
rs1351461034 1531 dbSNP
rs1310183960 1534 dbSNP
rs1431284117 1544 dbSNP
rs10064380 1547 dbSNP
rs898047937 1548 dbSNP
rs997643323 1553 dbSNP
rs775721896 1557 dbSNP
rs527331111 1578 dbSNP
rs999854156 1582 dbSNP
rs1466100437 1586 dbSNP
rs1379342013 1587 dbSNP
rs1179546261 1590 dbSNP
rs1056362421 1592 dbSNP
rs1252315223 1600 dbSNP
rs895834775 1601 dbSNP
rs1484823756 1614 dbSNP
rs1030455028 1616 dbSNP
rs888900495 1617 dbSNP
rs1007298643 1622 dbSNP
rs1259532248 1631 dbSNP
rs1258570287 1634 dbSNP
rs749727751 1636 dbSNP
rs150406740 1637 dbSNP
rs1228339928 1645 dbSNP
rs1032448573 1647 dbSNP
rs1489709771 1657 dbSNP
rs957747445 1663 dbSNP
rs994895783 1664 dbSNP
rs1028240610 1672 dbSNP
rs988185761 1674 dbSNP
rs1184914373 1676 dbSNP
rs185189840 1677 dbSNP
rs368324121 1687 dbSNP
rs966249420 1689 dbSNP
rs1157267471 1690 dbSNP
rs1412553202 1695 dbSNP
rs1456648730 1695 dbSNP
rs570643526 1695 dbSNP
rs981973528 1697 dbSNP
rs1237156796 1703 dbSNP
rs1459296647 1705 dbSNP
rs1444291370 1707 dbSNP
rs1491155537 1707 dbSNP
rs879598468 1707 dbSNP
rs926429019 1707 dbSNP
rs1491324503 1708 dbSNP
rs77124193 1709 dbSNP
rs1231886764 1711 dbSNP
rs991606161 1715 dbSNP
rs1285102603 1716 dbSNP
rs1309714391 1720 dbSNP
rs1350636062 1721 dbSNP
rs909259006 1723 dbSNP
rs1408682371 1724 dbSNP
rs531453293 1725 dbSNP
rs1323121897 1726 dbSNP
rs769136747 1727 dbSNP
rs1265255953 1729 dbSNP
rs1357653110 1734 dbSNP
rs1207933276 1740 dbSNP
rs942050019 1742 dbSNP
rs1036733073 1743 dbSNP
rs1322420531 1747 dbSNP
rs1253145335 1749 dbSNP
rs979167063 1750 dbSNP
rs923791257 1754 dbSNP
rs1473899799 1758 dbSNP
rs898121682 1764 dbSNP
rs1188071299 1766 dbSNP
rs935150844 1772 dbSNP
rs371746891 1774 dbSNP
rs1212392885 1776 dbSNP
rs1051911287 1784 dbSNP
rs896442370 1788 dbSNP
rs138187114 1806 dbSNP
rs1167601212 1814 dbSNP
rs114813533 1819 dbSNP
rs1422501942 1821 dbSNP
rs1170485276 1825 dbSNP
rs1227078142 1827 dbSNP
rs1365259020 1828 dbSNP
rs1371052945 1836 dbSNP
rs1440897629 1842 dbSNP
rs905821128 1842 dbSNP
rs1295968536 1851 dbSNP
rs1032107430 1852 dbSNP
rs1380657440 1856 dbSNP
rs867792043 1861 dbSNP
rs373893875 1896 dbSNP
rs548037605 1898 dbSNP
rs760138734 1907 dbSNP
rs149588740 1908 dbSNP
rs886508855 1909 dbSNP
rs970659449 1912 dbSNP
rs1477997884 1915 dbSNP
rs982006059 1918 dbSNP
rs1019068707 1922 dbSNP
rs966301875 1926 dbSNP
rs190170767 1927 dbSNP
rs959204956 1928 dbSNP
rs1028619509 1930 dbSNP
rs1276159075 1943 dbSNP
rs1216913924 1950 dbSNP
rs776212661 1962 dbSNP
rs1275364659 1963 dbSNP
rs566479746 1973 dbSNP
rs182354310 1974 dbSNP
rs1276037095 1977 dbSNP
rs979607233 1979 dbSNP
rs1174123756 1982 dbSNP
rs1202993062 1988 dbSNP
rs923744224 2003 dbSNP
rs963791858 2005 dbSNP
rs972125070 2008 dbSNP
rs759119498 2026 dbSNP
rs935058768 2034 dbSNP
rs1471871066 2037 dbSNP
rs765010084 2038 dbSNP
rs1183265740 2040 dbSNP
rs1483187741 2048 dbSNP
rs879331207 2050 dbSNP
rs566825832 2061 dbSNP
rs1278652606 2068 dbSNP
rs1220904093 2070 dbSNP
rs933599727 2073 dbSNP
rs1051987559 2074 dbSNP
rs910777488 2085 dbSNP
rs1483586402 2088 dbSNP
rs1287503282 2094 dbSNP
rs1181557432 2096 dbSNP
rs533891754 2097 dbSNP
rs1301283118 2104 dbSNP
rs1442585863 2107 dbSNP
rs558542471 2109 dbSNP
rs1359844551 2111 dbSNP
rs947952671 2124 dbSNP
rs577237335 2131 dbSNP
rs1054326758 2142 dbSNP
rs1411801570 2144 dbSNP
rs1160449032 2150 dbSNP
rs1190245343 2151 dbSNP
rs538364696 2152 dbSNP
rs752424041 2153 dbSNP
rs1473774527 2154 dbSNP
rs1252279723 2162 dbSNP
rs1179778499 2167 dbSNP
rs1237553418 2168 dbSNP
rs1204952641 2170 dbSNP
rs1463531956 2189 dbSNP
rs1044978444 2198 dbSNP
rs538806569 2203 dbSNP
rs1009716587 2209 dbSNP
rs758260201 2216 dbSNP
rs1310258883 2222 dbSNP
rs1227995177 2226 dbSNP
rs556070248 2230 dbSNP
rs1168146143 2232 dbSNP
rs1360397888 2250 dbSNP
rs1003180199 2251 dbSNP
rs1432977144 2259 dbSNP
rs143338737 2268 dbSNP
rs1321775649 2269 dbSNP
rs1335748647 2277 dbSNP
rs1459200757 2284 dbSNP
rs959511968 2289 dbSNP
rs764088756 2291 dbSNP
rs1164437526 2297 dbSNP
rs886565313 2306 dbSNP
rs751575622 2308 dbSNP
rs1414050084 2315 dbSNP
rs1436769561 2317 dbSNP
rs542142492 2319 dbSNP
rs901980802 2322 dbSNP
rs757359312 2326 dbSNP
rs1209298029 2327 dbSNP
rs1486786338 2333 dbSNP
rs560443959 2335 dbSNP
rs1220487689 2336 dbSNP
rs1322617755 2345 dbSNP
rs115030569 2347 dbSNP
rs963524213 2348 dbSNP
rs1364519290 2349 dbSNP
rs1000562769 2353 dbSNP
rs972105220 2362 dbSNP
rs746035382 2366 dbSNP
rs1389131740 2375 dbSNP
rs1293367484 2379 dbSNP
rs1312918004 2381 dbSNP
rs1031075119 2382 dbSNP
rs919313074 2384 dbSNP
rs1350148478 2387 dbSNP
rs796368270 2391 dbSNP
rs545783269 2402 dbSNP
rs1427363903 2409 dbSNP
rs1389049975 2412 dbSNP
rs1188573370 2415 dbSNP
rs991866718 2423 dbSNP
rs954726699 2426 dbSNP
rs987391835 2427 dbSNP
rs1294285937 2434 dbSNP
rs1203307886 2454 dbSNP
rs1341639587 2458 dbSNP
rs186465491 2465 dbSNP
rs1329925056 2468 dbSNP
rs1301147749 2483 dbSNP
rs1248415345 2492 dbSNP
rs1387754254 2510 dbSNP
rs370446715 2521 dbSNP
rs531289156 2526 dbSNP
rs931219969 2530 dbSNP
rs1049095509 2532 dbSNP
rs1053983125 2535 dbSNP
rs1168746258 2539 dbSNP
rs10051536 2543 dbSNP
rs562934111 2544 dbSNP
rs1433653466 2552 dbSNP
rs1270784022 2554 dbSNP
rs1458497182 2565 dbSNP
rs1179674684 2569 dbSNP
rs1042179950 2574 dbSNP
rs1482884333 2577 dbSNP
rs906244080 2578 dbSNP
rs1197668089 2587 dbSNP
rs1342926634 2604 dbSNP
rs902034833 2614 dbSNP
rs1234638895 2619 dbSNP
rs1003219238 2636 dbSNP
rs1286866799 2640 dbSNP
rs1409589485 2644 dbSNP
rs1320746319 2650 dbSNP
rs1054787836 2660 dbSNP
rs143298436 2668 dbSNP
rs548382767 2671 dbSNP
rs1399464289 2675 dbSNP
rs1301709575 2682 dbSNP
rs1470266378 2692 dbSNP
rs1431334545 2696 dbSNP
rs1005863482 2708 dbSNP
rs1156765906 2711 dbSNP
rs1472123892 2717 dbSNP
rs1413034082 2722 dbSNP
rs749586495 2729 dbSNP
rs1201055029 2731 dbSNP
rs904147125 2731 dbSNP
rs147543931 2732 dbSNP
rs1266778169 2734 dbSNP
rs1281488521 2735 dbSNP
rs1228210514 2736 dbSNP
rs533735899 2738 dbSNP
rs1281588981 2741 dbSNP
rs1229254752 2745 dbSNP
rs1240782156 2756 dbSNP
rs1026357389 2758 dbSNP
rs1332995372 2761 dbSNP
rs1452720340 2773 dbSNP
rs1408260765 2784 dbSNP
rs769040894 2787 dbSNP
rs987465319 2792 dbSNP
rs1385438099 2801 dbSNP
rs1160013800 2804 dbSNP
rs1471942961 2818 dbSNP
rs1368107142 2820 dbSNP
rs779344250 2821 dbSNP
rs1446491553 2823 dbSNP
rs1246780445 2824 dbSNP
rs748668982 2827 dbSNP
rs1286788748 2829 dbSNP
rs1208416849 2830 dbSNP
rs965020972 2835 dbSNP
rs1353901732 2849 dbSNP
rs534243102 2849 dbSNP
rs1283204771 2853 dbSNP
rs990154283 2855 dbSNP
rs1384388226 2856 dbSNP
rs140215964 2859 dbSNP
rs933730821 2860 dbSNP
rs1426614179 2864 dbSNP
rs1473279696 2869 dbSNP
rs1390342759 2870 dbSNP
rs980638985 2881 dbSNP
rs1426734200 2888 dbSNP
rs919747088 2898 dbSNP
rs945531197 2902 dbSNP
rs1187932578 2910 dbSNP
rs1476035921 2911 dbSNP
rs1406752836 2921 dbSNP
rs371324328 2928 dbSNP
rs978221832 2929 dbSNP
rs952668177 2932 dbSNP
rs1290971970 2946 dbSNP
rs1167377352 2947 dbSNP
rs1361065010 2949 dbSNP
rs1271871395 2955 dbSNP
rs927733412 2964 dbSNP
rs939081096 2971 dbSNP
rs1397852273 2976 dbSNP
rs907889616 2991 dbSNP
rs1054819333 2995 dbSNP
rs1404883342 2995 dbSNP
rs894789498 2997 dbSNP
rs941007827 2998 dbSNP
rs1330325504 3005 dbSNP
rs1301774831 3015 dbSNP
rs1406998524 3019 dbSNP
rs1368886479 3029 dbSNP
rs1168113212 3031 dbSNP
rs1038710561 3034 dbSNP
rs1422333289 3045 dbSNP
rs897029441 3072 dbSNP
rs1410506828 3096 dbSNP
rs1477964053 3108 dbSNP
rs1270053980 3111 dbSNP
rs1201966136 3113 dbSNP
rs1279229421 3117 dbSNP
rs1490754127 3121 dbSNP
rs1249161925 3129 dbSNP
rs558126038 3140 dbSNP
rs1307545586 3142 dbSNP
rs1274443442 3143 dbSNP
rs976044011 3146 dbSNP
rs1344136620 3149 dbSNP
rs1283702452 3152 dbSNP
rs1225103546 3160 dbSNP
rs570860389 3162 dbSNP
rs1348907156 3167 dbSNP
rs993967786 3168 dbSNP
rs1221738865 3172 dbSNP
rs1443139625 3176 dbSNP
rs1356381948 3191 dbSNP
rs1266680139 3193 dbSNP
rs1050744041 3218 dbSNP
rs1414412068 3219 dbSNP
rs1430588877 3224 dbSNP
rs1179120372 3225 dbSNP
rs1471798540 3227 dbSNP
rs1483774071 3235 dbSNP
rs1181878164 3236 dbSNP
rs1231767092 3252 dbSNP
rs886795421 3254 dbSNP
rs1234120792 3256 dbSNP
rs1207347817 3257 dbSNP
rs1183169448 3261 dbSNP
rs932067411 3265 dbSNP
rs1263645905 3269 dbSNP
rs1225166025 3276 dbSNP
rs10473254 3277 dbSNP
rs903978362 3278 dbSNP
rs890577031 3288 dbSNP
rs1372913847 3298 dbSNP
rs1282554702 3305 dbSNP
rs1332791518 3309 dbSNP
rs1313399549 3318 dbSNP
rs1008926201 3322 dbSNP
rs1339242285 3325 dbSNP
rs1328311983 3327 dbSNP
rs1456070795 3328 dbSNP
rs1017661569 3339 dbSNP
rs1160208031 3340 dbSNP
rs1333988777 3342 dbSNP
rs556664663 3351 dbSNP
rs376772461 3352 dbSNP
rs1053085095 3353 dbSNP
rs1179676395 3355 dbSNP
rs117302792 3365 dbSNP
rs1013279979 3370 dbSNP
rs989458193 3373 dbSNP
rs554026255 3379 dbSNP
rs4957435 3390 dbSNP
rs966944629 3394 dbSNP
rs1026821681 3412 dbSNP
rs779479911 3415 dbSNP
rs1319020501 3416 dbSNP
rs952631096 3422 dbSNP
rs928098914 3423 dbSNP
rs1271682279 3425 dbSNP
rs1015958320 3429 dbSNP
rs939112136 3430 dbSNP
rs1433534342 3440 dbSNP
rs976096091 3447 dbSNP
rs923268952 3455 dbSNP
rs990988402 3465 dbSNP
rs1444446111 3472 dbSNP
rs546151512 3475 dbSNP
rs986595155 3476 dbSNP
rs925485696 3482 dbSNP
rs1162283092 3486 dbSNP
rs936863837 3488 dbSNP
rs11558733 3500 dbSNP
rs1392360445 3502 dbSNP
rs916307387 3507 dbSNP
rs188089195 3510 dbSNP
rs759147542 3519 dbSNP
rs941025512 3523 dbSNP
rs892761962 3532 dbSNP
rs949607768 3537 dbSNP
rs142680333 3539 dbSNP
rs1486714195 3548 dbSNP
rs375698375 3554 dbSNP
rs769311638 3559 dbSNP
rs904820909 3566 dbSNP
rs1360360873 3568 dbSNP
rs1416237856 3574 dbSNP
rs1226258324 3577 dbSNP
rs1307492579 3578 dbSNP
rs150722016 3581 dbSNP
rs1365966340 3583 dbSNP
rs367610536 3583 dbSNP
rs546433306 3583 dbSNP
rs1450663162 3586 dbSNP
rs888191817 3589 dbSNP
rs1403964134 3591 dbSNP
rs1312683399 3593 dbSNP
rs1004478374 3594 dbSNP
rs1367006094 3598 dbSNP
rs139068128 3599 dbSNP
rs965301169 3604 dbSNP
rs1269504072 3608 dbSNP
rs1265010178 3609 dbSNP
rs541990001 3610 dbSNP
rs1198351813 3611 dbSNP
rs976596848 3615 dbSNP
rs1030304634 3619 dbSNP
rs953349161 3625 dbSNP
rs1480360953 3632 dbSNP
rs1251921435 3633 dbSNP
rs1050916805 3635 dbSNP
rs1263424350 3647 dbSNP
rs1310897293 3650 dbSNP
rs890973805 3654 dbSNP
rs1224499950 3655 dbSNP
rs180940149 3662 dbSNP
rs1389276231 3664 dbSNP
rs1250307033 3668 dbSNP
rs576471179 3671 dbSNP
rs185559671 3673 dbSNP
rs1015182939 3675 dbSNP
rs566730777 3682 dbSNP
rs1463478075 3683 dbSNP
rs1375847679 3687 dbSNP
rs534233911 3689 dbSNP
rs1175525549 3693 dbSNP
rs1480624288 3693 dbSNP
rs1011360346 3696 dbSNP
rs555866976 3701 dbSNP
rs1022293449 3703 dbSNP
rs1251350509 3705 dbSNP
rs1479078529 3714 dbSNP
rs1177278164 3717 dbSNP
rs779766092 3722 dbSNP
rs949619303 3723 dbSNP
rs966975734 3724 dbSNP
rs1046660430 3726 dbSNP
rs1326133830 3727 dbSNP
rs1286809386 3729 dbSNP
rs926290740 3732 dbSNP
rs1334750287 3734 dbSNP
rs937704420 3740 dbSNP
rs1048043613 3741 dbSNP
rs1403870726 3743 dbSNP
rs1317605139 3744 dbSNP
rs1335978107 3756 dbSNP
rs116227515 3768 dbSNP
rs751481056 3770 dbSNP
rs1156532031 3782 dbSNP
rs1003961189 3784 dbSNP
rs1036835571 3788 dbSNP
rs960882279 3791 dbSNP
rs900987876 3796 dbSNP
rs990963005 3798 dbSNP
rs1283402100 3799 dbSNP
rs916322449 3806 dbSNP
rs1322142471 3807 dbSNP
rs1462997544 3813 dbSNP
rs1266644724 3816 dbSNP
rs1204908491 3825 dbSNP
rs570754410 3831 dbSNP
rs1260916042 3838 dbSNP
rs974183269 3839 dbSNP
rs1240623644 3845 dbSNP
rs918232286 3850 dbSNP
rs1313651364 3852 dbSNP
rs1269624167 3854 dbSNP
rs1384889538 3855 dbSNP
rs761846806 3859 dbSNP
rs1050986220 3862 dbSNP
rs1204899838 3869 dbSNP
rs879870696 3870 dbSNP
rs912441452 3874 dbSNP
rs574544898 3875 dbSNP
rs1039532379 3883 dbSNP
rs531685298 3901 dbSNP
rs1384694931 3903 dbSNP
rs1164235344 3907 dbSNP
rs1008010597 3908 dbSNP
rs1246723121 3919 dbSNP
rs1268283834 3921 dbSNP
rs1032336772 3935 dbSNP
rs116834399 3937 dbSNP
rs1264244364 3957 dbSNP
rs778917166 3959 dbSNP
rs1044145475 3965 dbSNP
rs902528220 3974 dbSNP
rs780100924 3982 dbSNP
rs1361549081 3983 dbSNP
rs1268319865 4003 dbSNP
rs970857408 4004 dbSNP
rs1035272375 4010 dbSNP
rs1157803653 4024 dbSNP
rs1403355147 4025 dbSNP
rs1209728303 4026 dbSNP
rs1365178731 4036 dbSNP
rs568535896 4039 dbSNP
rs1164373332 4040 dbSNP
rs982264563 4048 dbSNP
rs190176501 4051 dbSNP
rs1418052817 4052 dbSNP
rs1167868822 4054 dbSNP
rs1382460229 4062 dbSNP
rs926888111 4067 dbSNP
rs1197694637 4071 dbSNP
rs938275529 4072 dbSNP
rs1267695452 4074 dbSNP
rs1048572465 4083 dbSNP
rs1490702653 4087 dbSNP
rs1270221696 4099 dbSNP
rs909518180 4101 dbSNP
rs1406713296 4108 dbSNP
rs960913079 4109 dbSNP
rs1271777900 4110 dbSNP
rs1253872472 4111 dbSNP
rs1221463837 4123 dbSNP
rs1012861340 4129 dbSNP
rs1303678220 4131 dbSNP
rs1303962264 4135 dbSNP
rs1483987994 4135 dbSNP
rs202119670 4135 dbSNP
rs1344394886 4148 dbSNP
rs879003940 4148 dbSNP
rs1402519629 4149 dbSNP
rs1328196198 4165 dbSNP
rs1036708430 4169 dbSNP
rs78514399 4170 dbSNP
rs1317170467 4177 dbSNP
rs1174775428 4180 dbSNP
rs1237833915 4182 dbSNP
rs997996741 4183 dbSNP
rs1199731800 4184 dbSNP
rs747880353 4189 dbSNP
rs962797606 4199 dbSNP
rs1230695505 4201 dbSNP
rs1203194620 4204 dbSNP
rs973865376 4206 dbSNP
rs918314242 4207 dbSNP
rs1274995242 4209 dbSNP
rs10472358 4216 dbSNP
rs1322583032 4219 dbSNP
rs1283642230 4230 dbSNP
rs183123958 4236 dbSNP
rs912515310 4239 dbSNP
rs557983373 4244 dbSNP
rs1251271744 4245 dbSNP
rs541673121 4246 dbSNP
rs1442977872 4248 dbSNP
rs1335343256 4259 dbSNP
rs1356837596 4259 dbSNP
rs914398483 4269 dbSNP
rs1032759517 4278 dbSNP
rs1179838349 4288 dbSNP
rs560352651 4292 dbSNP
rs1415879673 4295 dbSNP
rs543369998 4296 dbSNP
rs1405341168 4302 dbSNP
rs1009669138 4304 dbSNP
rs1470182937 4306 dbSNP
rs1239421541 4308 dbSNP
rs1043851172 4313 dbSNP
rs10472359 4314 dbSNP
rs982317171 4318 dbSNP
rs371855024 4335 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 285636.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ugacagacaGAGUCUUGGGGUc 5'
                   || | ||||||| 
Target 5' ---------CU-AAAACCCCAc 3'
 		1 - 12
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_175921 | 3UTR | UGACUAAAGACUUUUCUUUCUUCUUUUGCAUAUAGUAGAGUGAGGUGAGGGUCGUGGCUAAAACCCCACAAUAACUUUACAUUCCUAGCUUUACAGUCUUGCUGUGAAUUCUCUGGUGUUCAUUAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_175921 | 3UTR | CAAAUCAUGACUAAAGACUUUUCUUUCUUCUUUUGCAUAUAGUAGAGUGAGGUGAGGGUCGUGGCUAAAACCCCACAAUAACUUUACAUUCCUAGCUUUACAGUCUUGCUGUGAAUUCUCUGGUGUUCAUUAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_175921 | 3UTR | UGACUAAAGACUUUUCUUUCUUCUUUUGCAUAUAGUAGAGUGAGGUGAGGGUCGUGGCUAAAACCCCACAAUAACUUUACAUUCCUAGCUUUACAGUCUUGCUGUGAAUUCUCUGGUGUUCAUUAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_175921 | 3UTR | GACUUUUCUUUCUUCUUUUGCAUAUAGUAGAGUGAGGUGAGGGUCGUGGCUAAAACCCCACAAUAACUUUACAUUCCUAGCUUUACAGUCUUGCUGUGAAUUCUCUGGUGUUCAUUAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_175921 | 3UTR | ACUUUUCUUUCUUCUUUUGCAUAUAGUAGAGUGAGGUGAGGGUCGUGGCUAAAACCCCACAAUAACUUUACAUUCCUAGCUUUACAGUCUUGCUGUGAAUUCUCUGGUGUUCAUUAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_175921 | 3UTR | AUCAUGACUAAAGACUUUUCUUUCUUCUUUUGCAUAUAGUAGAGUGAGGUGAGGGUCGUGGCUAAAACCCCACAAUAACUUUACAUUCCUAGCUUUACAGUCUUGCUGUGAAUUCUCUGGUGUUCAUUAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000381647.2 | 3UTR | CUAAAACCCCACAAUAACUUUACAUUCCUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
STAD -0.524 0.02 -0.521 0.02 15 Click to see details
HNSC 0.389 0.04 0.404 0.03 21 Click to see details
THCA 0.143 0.14 0.145 0.14 59 Click to see details
ESCA -0.42 0.17 -0.357 0.22 7 Click to see details
PRAD -0.212 0.2 -0.148 0.28 18 Click to see details
BRCA -0.101 0.2 -0.055 0.33 69 Click to see details
KIRP 0.123 0.25 0.206 0.13 32 Click to see details
KIRC -0.07 0.29 -0.085 0.25 67 Click to see details
LIHC -0.08 0.29 -0.196 0.09 48 Click to see details
LUSC 0.082 0.33 0.122 0.26 31 Click to see details
KICH -0.095 0.33 -0.159 0.23 23 Click to see details
CHOL -0.106 0.4 0.000 0.5 8 Click to see details
BLCA -0.025 0.48 -0.143 0.37 8 Click to see details
UCEC 0.004 0.49 0.117 0.32 18 Click to see details
UCEC 0.004 0.49 0.117 0.32 18 Click to see details
UCEC 0.004 0.49 0.117 0.32 18 Click to see details
UCEC 0.004 0.49 0.117 0.32 18 Click to see details
UCEC 0.004 0.49 0.117 0.32 18 Click to see details
121 hsa-miR-3170 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074402 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT114937 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT248326 HOXC8 homeobox C8 2 2
MIRT329432 C5ORF51 chromosome 5 open reading frame 51 2 2
MIRT460868 UBE2S ubiquitin conjugating enzyme E2 S 2 2
MIRT464626 UBE4A ubiquitination factor E4A 2 2
MIRT466225 TMED10 transmembrane p24 trafficking protein 10 2 2
MIRT473424 MDM4 MDM4, p53 regulator 2 2
MIRT473514 MAX MYC associated factor X 2 2
MIRT475798 HDGF heparin binding growth factor 2 2
MIRT478032 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT482963 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT485905 PGPEP1 pyroglutamyl-peptidase I 2 6
MIRT488146 PRRC2B proline rich coiled-coil 2B 2 4
MIRT491777 ZNF24 zinc finger protein 24 2 2
MIRT493023 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT502199 HSPB8 heat shock protein family B (small) member 8 2 2
MIRT505367 TMEM154 transmembrane protein 154 2 4
MIRT505919 RCAN3 RCAN family member 3 2 4
MIRT509089 SYNPO2L synaptopodin 2 like 2 4
MIRT509103 BMP8B bone morphogenetic protein 8b 2 6
MIRT509571 HIST2H2AB histone cluster 2 H2A family member b 2 4
MIRT509782 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT511295 KIAA1551 KIAA1551 2 2
MIRT514289 FXYD5 FXYD domain containing ion transport regulator 5 2 6
MIRT514389 CLUAP1 clusterin associated protein 1 2 2
MIRT514404 RSL1D1 ribosomal L1 domain containing 1 2 2
MIRT514421 SLC38A7 solute carrier family 38 member 7 2 2
MIRT514546 PTGR2 prostaglandin reductase 2 2 2
MIRT514790 SLC25A45 solute carrier family 25 member 45 2 2
MIRT514836 LYRM7 LYR motif containing 7 2 2
MIRT514850 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 2
MIRT515112 LMOD3 leiomodin 3 2 2
MIRT515338 CXorf36 chromosome X open reading frame 36 2 2
MIRT515582 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT515612 ISY1 ISY1 splicing factor homolog 2 2
MIRT516018 A1CF APOBEC1 complementation factor 2 2
MIRT516721 MYPN myopalladin 2 2
MIRT516739 GSTK1 glutathione S-transferase kappa 1 2 2
MIRT516774 PTRF caveolae associated protein 1 2 4
MIRT517076 C3orf62 chromosome 3 open reading frame 62 2 2
MIRT517115 NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 2 2
MIRT517196 OTUD6A OTU deubiquitinase 6A 2 2
MIRT517321 ZNF347 zinc finger protein 347 2 2
MIRT517612 DEGS1 delta 4-desaturase, sphingolipid 1 2 2
MIRT517626 ZNF491 zinc finger protein 491 2 2
MIRT517656 TRIM72 tripartite motif containing 72 2 4
MIRT517742 DIS3L DIS3 like exosome 3'-5' exoribonuclease 2 4
MIRT518002 RPL4 ribosomal protein L4 2 4
MIRT518165 FGB fibrinogen beta chain 2 2
MIRT518180 SLC27A4 solute carrier family 27 member 4 2 2
MIRT518555 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT518572 ATP8B1 ATPase phospholipid transporting 8B1 2 2
MIRT519008 NOA1 nitric oxide associated 1 2 2
MIRT519340 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT519363 RBM28 RNA binding motif protein 28 2 2
MIRT519388 DNASE2 deoxyribonuclease 2, lysosomal 2 4
MIRT519404 KCNA7 potassium voltage-gated channel subfamily A member 7 2 4
MIRT519615 ZNF788 zinc finger family member 788 2 4
MIRT519817 ZKSCAN4 zinc finger with KRAB and SCAN domains 4 2 2
MIRT520455 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT520761 TCF23 transcription factor 23 2 2
MIRT520981 SOCS5 suppressor of cytokine signaling 5 2 2
MIRT521275 RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component 2 2
MIRT521397 RDH11 retinol dehydrogenase 11 (all-trans/9-cis/11-cis) 2 2
MIRT522023 PAQR3 progestin and adipoQ receptor family member 3 2 4
MIRT522105 NUDT3 nudix hydrolase 3 2 2
MIRT522145 NR2F6 nuclear receptor subfamily 2 group F member 6 2 4
MIRT522219 NPFFR1 neuropeptide FF receptor 1 2 2
MIRT522274 NKAP NFKB activating protein 2 2
MIRT522639 MANEAL mannosidase endo-alpha like 2 2
MIRT523167 HIST3H3 histone cluster 3 H3 2 2
MIRT523497 GMPS guanine monophosphate synthase 2 4
MIRT524033 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524396 COQ10B coenzyme Q10B 2 2
MIRT524682 C12orf49 chromosome 12 open reading frame 49 2 2
MIRT525542 PHB2 prohibitin 2 2 4
MIRT528430 COL9A2 collagen type IX alpha 2 chain 2 2
MIRT528738 RAB13 RAB13, member RAS oncogene family 2 2
MIRT530944 CMBL carboxymethylenebutenolidase homolog 2 2
MIRT531653 ZFP14 ZFP14 zinc finger protein 2 2
MIRT531851 MAP2K2 mitogen-activated protein kinase kinase 2 2 2
MIRT533473 TRIM71 tripartite motif containing 71 2 2
MIRT533658 TMF1 TATA element modulatory factor 1 2 2
MIRT540966 ZNF8 zinc finger protein 8 2 2
MIRT541988 MYO1C myosin IC 2 2
MIRT549545 CLPP caseinolytic mitochondrial matrix peptidase proteolytic subunit 2 2
MIRT551722 PCYT1A phosphate cytidylyltransferase 1, choline, alpha 2 2
MIRT553984 SRPR SRP receptor alpha subunit 2 2
MIRT555113 PUM2 pumilio RNA binding family member 2 2 2
MIRT563172 ZRANB3 zinc finger RANBP2-type containing 3 2 2
MIRT564006 UGT2B4 UDP glucuronosyltransferase family 2 member B4 2 2
MIRT564445 SLC35E2 solute carrier family 35 member E2 2 2
MIRT565959 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT607541 GLI2 GLI family zinc finger 2 2 2
MIRT607685 MAPK10 mitogen-activated protein kinase 10 2 2
MIRT609323 ZNF701 zinc finger protein 701 2 2
MIRT614038 THBS2 thrombospondin 2 2 2
MIRT616763 ANKRD33B ankyrin repeat domain 33B 2 2
MIRT619706 C6orf132 chromosome 6 open reading frame 132 2 2
MIRT619955 CLN8 CLN8, transmembrane ER and ERGIC protein 2 2
MIRT625229 C6orf89 chromosome 6 open reading frame 89 2 2
MIRT634238 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634964 C8orf17 chromosome 8 open reading frame 17 2 2
MIRT639615 FGF19 fibroblast growth factor 19 2 2
MIRT642692 ZNF878 zinc finger protein 878 2 2
MIRT643689 KIAA0586 KIAA0586 2 2
MIRT645271 SLC38A5 solute carrier family 38 member 5 2 2
MIRT647340 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT648167 TMEM192 transmembrane protein 192 2 2
MIRT655464 PAK3 p21 (RAC1) activated kinase 3 2 2
MIRT660232 BMP7 bone morphogenetic protein 7 2 2
MIRT666181 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT673638 CYCS cytochrome c, somatic 2 2
MIRT674044 ATXN3 ataxin 3 2 2
MIRT691167 APOL6 apolipoprotein L6 2 2
MIRT711724 NUPL2 nucleoporin like 2 2 2
MIRT712404 MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 2 2
MIRT715537 FTCD formimidoyltransferase cyclodeaminase 2 2
MIRT715939 NUP93 nucleoporin 93 2 2
MIRT722976 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3170 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-3170 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-miR-3170 Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-3170 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3170 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-3170 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3170 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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