miRTarBase - #MIRT332968


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pre-miRNA Information
pre-miRNA hsa-mir-3180-1   
Genomic Coordinates chr16: 14911220 - 14911313
Description Homo sapiens miR-3180-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-3180-2   
Genomic Coordinates chr16: 16309879 - 16309966
Description Homo sapiens miR-3180-2 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-3180-3   
Genomic Coordinates chr16: 18402178 - 18402271
Description Homo sapiens miR-3180-3 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3180-5p
Sequence 18| CUUCCAGACGCUCCGCCCCACGUCG |42
Evidence Experimental
Experiments Illumina
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CELF1   
Synonyms BRUNOL2, CUG-BP, CUGBP, CUGBP1, EDEN-BP, NAB50, NAPOR, hNab50
Description CUGBP Elav-like family member 1
Transcript NM_001172640   
Other Transcripts NM_001025596 , NM_001172639 , NM_006560 , NM_198700   
Expression
Putative miRNA Targets on CELF1
3'UTR of CELF1
(miRNA target sites are highlighted)		 
>CELF1|NM_001172640|3'UTR
   1 GCGTGCTCCCCTCTGAGACTGGAGTGAGAGGGTCTTCTGGCACAGCTTGCCCTGAAGACTCGGCTACTGCCTTCTGTGGG
  81 AGTTTCGCTTCGTACAGAGGACAAGTTTGTGCTTTGGTTTCCAGTGTTTTACTTTGGAGTTTAGGTGCCATATCCTGAGG
 161 TTTTTTTTGTTTTTGTTTTTGTTTCTCCTTTATTTAAAGTTTGCTGTGTTTGTAACCAGTGTGTGTTGAGAAGGACCAAC
 241 ACCAAACCACCCTGGGGAAGGGGGACAGGGAAACATTTAACACAGACGATGATCAGGATTTGCCCCAAACCACCCCAAGA
 321 GAGAGGACTGAGTGGAACAAAAAAGTGACCCCCAGAACCTCTCTTAGTGTGAGGGTGGGTAGAATGAGAACTGACACCTG
 401 GGAGCTGTGGGGAGCAGAGCGGCTTTGGGGAAGAGTGGAGTGACTAGACACCTAATGCCCTGGCAGCTGGAGACTCAAAC
 481 TCCTGTACAGCTACCTTCTGGGAAATAGTTTTTGACACCTATTTTTCAGATTCTTGTCCGGAATTTCTGCTGCTCTTTTC
 561 AAAAAAGGGCATTAACAATTCTCTGGAAATAAAGCACCTGTTAGCCTGACATATGCAAAAAGCAGGGCGGCATCACCCAT
 641 TACGAGCTCCCCCAGCCAGCAGTCAGTATTGGATTGGCCTTGCCTGGCTGGTGGCAGTTTGGGAGAAACAGCCAAAGAGG
 721 TTAGTTTATTTCAACACCAAATTAGACCATGGCCCATTTCCAACGGGTCTCTTTAAAGGCCTCTATGGAATACATTGCCT
 801 GGTTTCCTTCTTTGCAGTTCACCACAGCAAGGAATGTCACCTCCATCCCAAGCCACCATTTTCTCATGAAGGCAAATCCA
 881 AGAAGGGCTTGCAGTTCTTGCTGAAGGGGGTACCATTTGTGGGCAGAGTGATCAATACCATCTAGTTGGGGGAGGAGGAG
 961 CTTATTTCTTGGTGTACTTGAATCAGAAGGTCCCTGCAAGCCAGTATGCTTCATTTGCCAGTGGCCAGAAATTCTCCCTT
1041 GCCTCCTTGATTGAGGTGTCCCAGATGTAGTATTCCCACAGGGGTCTGGCAGGCCCCTCCTGTAACCACTCCAGTCACAT
1121 TTTCTGCTCTTGAGGCAGAGGTGACATCAGGACGTTTACAGCCTCCACATGAATTGAGTGTTCATTTACCTCAGTATTAC
1201 CGTGTTCATTTTTGTCCTCGTGCTACAGTTAGCTCCCTGCCGCCTCTTGCAGGTCTTACTTCAGCTCTTGCCTGTGACCC
1281 ACACAGCTTCTGGGCTCTGCCTCTGCTCTAAGAAGTGCTGTGGGGGTAGAGAACCAGGAAGGACATGCTGTTGGGAATGT
1361 ACACCTGGGCAGAGGTGGCCCTGTTAAGATGTGACTGTAGCCACAGCCAGGGATGGGATCCCTGGGTCTCTGGAATCTGA
1441 AACCTCAACAAATACCAGTCTTGACCCCTAGCAGCAGAGATAAGAATAAAGGGGTTGGTTTGCTATTAAGTCAGATGGGG
1521 GCTCTCTCCTTGTCATGCTGTCCCTGTGGGTAACAGACAGGGATTGACCATCTTACTGTTGTACAGGTAGCTGGTGGTGT
1601 TGGATTATCCCATTGAAGCTGGGACAGCTGTTCCTTTCTCATAGTGATAACTTGGGTCTGTTGTCCTCTAAGGAACGTGA
1681 AACATACACTTCTTAAGCTGAACCACGTAAACTTGAAATTCTGCGCACTGGGAGAAATGTGTCCTGTGTTTCAAAGGATA
1761 AAACTGTTCTAAAGGCTTCCAGGGTCATGATGGGATTTTTTAAATAAATGCAAAAAATAAAAATAAAAAAGAAAAAAGAA
1841 AACAAAAAAAAAAAAGAAAAAAATGCTAGGTTGGGGAGGCGCTGTTCTGAATCCCAACCGGCTGGAACCAAGAATGTCGT
1921 TTCTATTTTTATAGAAGTTTTATACAGCTCCGGGGTGGAGAATATTTATTACCTAAATTATATCTCTGGAAAAGGCCAGG
2001 ATTTTGTAGAATCCAGAATGTGATTGTTATACACACAGGGTGCTGTGTATGATTGAAACTACTGACTTTCTGTGGCCCGT
2081 TTGCAGCCCAGCTAACCTGCCCAAGGGGAAGGTGTTAATGCTGTGAATTGGCAGAGGAGAGAGCTGTGCTCCATAGGGTG
2161 CTGCCGGTGCTGTGCTCCCTAGCCTTCTGTTCTGTCTTCCTCCTTAGCCAGAACGCCACTCCCTTCCCACATCCCCTTCT
2241 TCTCTCCGCCTTCCCCCATCTCACCATTATTTGTCCATGGATTTGTCCTGGGCTCTGGGACCTTATGAAACCCCTTTCCT
2321 AATGACATAAGAGGCCAAGGTGCAATCCACCCACCTTTGATACCAGACCCTGAGGGCTTCATACCTGCTGATGGGTTTTC
2401 TTTTCTAAAAGGAATGCTCGCCCCAGCAGGGTCCTGGGCTGCTTGAGCAGCCAGCTGGTGAGACCATGCACTTCTCTGTT
2481 CTCTCCTCCCCCTGCCCAGTGAGTTAGCACAGCAGTAGCACTGCCCTTGAGCACAGTTCTTTCCCCAGGCCAAAGATGGT
2561 TTTGTGAAGAAGCTGCTCCCCTACAAGTCTCACGTGTGAAAGGGCTCAGCTCAGAGTGGAGACTCGCTGTCAAGTCTTAA
2641 GCAATCCTTTTCTGTTGTGTGAAGGTTTCACTTACAATGTGTTTTCTGCTGTAGTTTTGTTTCTTACTTGGGTTACATCA
2721 TGAAATTGATTTGCCTTGAATGCAGCCAGACCACTGTCTCCTGGGTTCCCCTTGAGTGGCCAGGGCCTGGATGGAAGCTA
2801 AGAGCTTGGATTTCTGGGAACAAAGGGCCATCCCCATAAGATTGAGCAGAAATTCTGGTCCTCTTCCCTGAAAAATTTTC
2881 CCCACCCCAGCCAGCATCTTCTGCTTCCCCTTGGGTTGTGACCAGGGAGTGGGGAGAGAGGCTGAGGCTCTGCTCCCCTG
2961 GAGACCTTCTCTTAGGAGTTGGGTGCTTCATGGAAAATCCAAGCCTTAGGTTCCCTTCTGTCTCTGGCAATTAGATGTGT
3041 TCTTGGTGTCCTCCATGTCCTTTTTGACTTTTCCCTGTGTCCATTGTTAGCATGTGCAAAAGTTCCCTGTCATTACCCAA
3121 CCCCTGCCCGCCCACCTCATTTCAGGGCTGTACACACAGTGAGTGTTCCTGTTCTCTCTCTCTTTGTTTGGATGTATTGC
3201 TCTGTGTAACTCAGTGGGTCTCCCTCTTTCTGGTTTGTTTTTTTTTCTAGATTCCTGCCGTTTGTTCATCGTTGTGCCTA
3281 AAGCATGTCGATGTGGCGTCAAGTACATCGTCCAAATCCCTGTCTCTTCAGCTTCTCTGATGCTTGAACTCTCACCTTTG
3361 ACCTTGTGTTGACCTTTGATGCTGATGTGTATTTTTATTATGTTTGTTTCTTTCTTCGTTTTTTTTTCTTTTTTTCTTTC
3441 CTTTTTTTTTCCTTTTGTGCTGCCAAATTGGTTTTGCTAGAACGACTGCTGAAGGGGAAATATTTAAACTTGCATTTGAA
3521 TATAAAAAAAATCTATTTTTCTAGAACTTCATAAGATAACCACTTGATTTTGTGATTCCAATTCTTTGTAATTGTCTTCA
3601 GAGCAGCCCTACTAGCACATACCGCGTGGTGTTTGTATTTCTGTGAACACACAGCCAGTCCGTTTCTAGGCTTTGTTTCT
3681 CTGTGTGCTTAGTTTTAAAGACAACTTTGAAGTAAACAATGAAATAAAAGATGTCACTAAAACCTCTGAGGCTCCTGAGC
3761 ACATTTTGCTGATACAGTCTGTGGGGCTTGAGGAGACCGCATGTATTGTTCTTTCTTTTGTTTTTCTTCTGAGTTCTCAA
3841 CTGCGGAGAGCACCTGAACCCCCTTTCCTTTTTGACCGCAGGCTGCACTTTGGGCCCCAGCCAGCCCTTTTTCTTTTTCT
3921 TTTTCTTTTGTGGTTCTTCCCTGGAGCGACTCTGGGGAGTCCTGGATATCCCGCCTGCCCCTTCCCCTCAGCCCCATGCT
4001 TGTTCCAACAGTCTCCACAGCAAAATGTGATGCTTTGATTTTTTTGTTGTTGTTTTTGTTTTTGTATTGTTTTTGTGTTT
4081 TTGTTTTGAATTTTTTCCTTTCCTACTAAGATTATGCCCAGAAAAAAGTTTTGCATGTTTCCTGCTGTTTCTTCACACCT
4161 TCGTATATATCACCTTCACCTCTCTGTTTTCTATAGTTTGTGCAAAAACTGATCGATTTAAAAGGGTTTCAAAGAAGCTG
4241 TTTTAAATTGTTGTAGGGTTGATTATTTTTTTCAAGATTGTATTGTTTAATTTTGAAGTGGCAACTTTCTCCTCTATTGC
4321 CCTTAGAGCGTTTGCCTGTGCACTTAGACTGTCACTTCGTGTGGCCTCCAGGTCTTACCGGGGCTTCCGGGAGGCTGGCT
4401 GCTTTGCTCAGAGAGGGTGGGAAGGGGGCCTGGAGAGACACGAGAAGCAGAGGTAGAGCCTAGAAGGTGGCAGCAGGTGG
4481 GTAAGAGGCTTATTTAGCACATTAGGGGCAGTGAGCACCTGGAGGAAGGAGGGCGCTCCCAATCACCCGTAGGAGGCCAT
4561 CTGCACACCAAGCGGCAATTCACCTGCTGGCGCTTTTCCTAGGTGACAAGCACAATACTACAGTCTTCACACTGTTTACA
4641 GCCCTGGGCACCAGCCACCCGGCACTGGCTCTTCATCACAGCTCTGCTCTTGCTTAGCTAGTGGGGTGGGGGAAAGGGCA
4721 GGGATTTGTTTTTTTAATTGGGTGGAGAGCCAAACAGCTACTGTCCCTGGGTGCCAAGCAAGCCAGTTTTTTGGTTCCCT
4801 GAGGGAAACTGACCCTCCTCTCTTGTGGCACCATCCAGCCTCAGGGTCTTGGAGACTTGAGTAAGAATGTGAGTGGAGGG
4881 GGAGAGGTGAGGAGAGGAGCACAGGGTGGATCTGTGGAGGGAAGAGGTTACAGGGGGAGGAGCTGATGATAGATCCCACC
4961 CAGACTTAAGCTGCTGGTGGGTGGGTGAGCTGGGAAGTAGGACTGTCCAGGGAAGGGTGGAGAGATGTAGCTAGGGGCTG
5041 GGGAGGGGGAGGTGGAAGCGCTATTGAGCATCCTCCACACCAAGGTTGATGAAGGAAGGGATCCCAGCAGGGTTTCTGCT
5121 CTGGGGCTGGCAGGTTGCCTGGTATTATGCCCAAGGCCGCTCTGCCTGGGGGAAAGGGCAGCCAGGCAGAGGCCCAGTGT
5201 CTGGTAGGCTGCTGAATTTCCTGGAAGGGGTGATTGGATGGAAAGAGGCCAGAAACCCCAGCCTGAGAGACTGCTGTGCA
5281 CCCCACAGTCTGACTGCACAGAGCCGCCTCTGTTGGCAGGAGGCACTGAGGCTCCCCTTCCTGTGTATTGAGAAGCAGTG
5361 TTTGCCAATATATTTTGCTTTCAATTCCAAGAGGAGCTCTGGGAAAACCTGTGGATAAAACCAAATGCCAAATGTTGGAC
5441 GTTGTTTCCTTTTCCTTTTCTCTCTCTGATTGTTTTAATTGTTCTGTGGTGGTTTTAATGGATTTGAGACCCTGGAGCGG
5521 CAGCTGCCTTTCTGATTTCCAGCTGCTTTTTGTGAATAATTTAAAAAGAAAAAAAAAAAGAAACTTTACATTTTGGAGAC
5601 AAACCTGTGTGAGTTTTTTATTGGTACAAACGTTGTATTTAACACTAGGGGTTTTGTACAGTTTTTTGCCTTTTCTACTA
5681 GAAAACAATGTAAAGTGATTTCACAATGTGAAGAGAAAAAAAAATTGCCACTATGACCAAACGCACAGTCTGTTCTGCAG
5761 CAACAACGGGATTCAATCAACTCAGTCGTGATTCAGCCGTAGAAATGCTTTTCCTTTATCTTGTTTGAGCTTTTCCTTTC
5841 TTTCCTGTTTTGATTTGCAAAAGAAAATGTCTTTTTTGTGTGAACTTGTGTTGTACTCTGTAGAAAATTATGGATTTTAC
5921 TTTAATGGTTTAAAAAAAGGCAAGGAGAGCCCTCGTCGCTTTTCTTACCTAATCACAGAGTTTGTGTAGTGAATTTAAAA
6001 AGAAAAAAAAATTGTTATAAGTTTGGAGCAAGGGAGTATGTGTTTCAAAGGAATCTCCTTCCTTTTTTTGTGTGTTTTTC
6081 CTTTTGTCCCAATGGGGAACCTAAATCTGTTTTAATTGCACAGACACATGGACAAAAAGTCATTTTGTATCTGCCAAGTG
6161 TGGTACCTTCCTTTGTTTATTTGCTATTAAACTGTTTGAGAAGAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gcugcACCC---CGCCUCGCAGACCUUc 5'
               ||||    | |:|: ||||||| 
Target 5' agggaTGGGATCCCTGGGTCTCTGGAAt 3'
 1409 - 1436 156.00 -18.90
2 
miRNA  3' gcugcacccCGCCUCGCAGACCUUc 5'
                   | ||||| |||||:| 
Target 5' caattccaaGAGGAGC-TCTGGGAa 3'
 5382 - 5405 143.00 -16.80
3 
miRNA  3' gcugcaccccgccucgcAGACCUUc 5'
                           ||||||| 
Target 5' aagggcattaacaattcTCTGGAAa 3'
 565 - 589 140.00 -10.93
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN13326255 2 COSMIC
COSN13326254 3 COSMIC
COSN32052841 50 COSMIC
COSN26970270 71 COSMIC
COSN26970271 108 COSMIC
COSN8641706 145 COSMIC
COSN26970272 149 COSMIC
COSN8681778 159 COSMIC
COSN1133605 187 COSMIC
COSN17423836 609 COSMIC
COSN14618939 759 COSMIC
COSN5306354 796 COSMIC
COSN22274972 1007 COSMIC
COSN29438700 1353 COSMIC
COSN4897349 2277 COSMIC
COSN8280506 2302 COSMIC
COSN25132171 2707 COSMIC
COSN29957166 2740 COSMIC
COSN5912758 2834 COSMIC
COSN5912757 2848 COSMIC
COSN23820688 3154 COSMIC
COSN21509732 3191 COSMIC
COSN5912756 3218 COSMIC
COSN29517682 3325 COSMIC
COSN5261686 3378 COSMIC
COSN31559511 3386 COSMIC
COSN23819451 3454 COSMIC
COSN31516318 3498 COSMIC
COSN31569147 3506 COSMIC
COSN30543917 3539 COSMIC
COSN31483824 3579 COSMIC
COSN31607284 3627 COSMIC
COSN31536123 3719 COSMIC
COSN30539140 3733 COSMIC
COSN30539148 3809 COSMIC
COSN5912755 4369 COSMIC
COSN24989112 4730 COSMIC
COSN18930259 5031 COSMIC
COSN16125083 5893 COSMIC
rs555328608 5667 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1261256325 1 dbSNP
rs760769305 2 dbSNP
rs376118578 3 dbSNP
rs1275465163 6 dbSNP
rs1438919197 7 dbSNP
rs368193470 9 dbSNP
rs745661116 13 dbSNP
rs778722370 17 dbSNP
rs566258688 20 dbSNP
rs1335390679 24 dbSNP
rs1360560579 27 dbSNP
rs1343176581 30 dbSNP
rs749204728 32 dbSNP
rs1429431069 34 dbSNP
rs1056035284 37 dbSNP
rs1173852694 44 dbSNP
rs892269368 46 dbSNP
rs1413700823 47 dbSNP
rs570997512 55 dbSNP
rs201800783 62 dbSNP
rs1051092703 70 dbSNP
rs547680359 71 dbSNP
rs932599044 74 dbSNP
rs1316645457 77 dbSNP
rs1360368959 81 dbSNP
rs1234501607 89 dbSNP
rs921357023 97 dbSNP
rs981104057 108 dbSNP
rs1485002206 111 dbSNP
rs1208073727 115 dbSNP
rs929677376 119 dbSNP
rs781259418 120 dbSNP
rs533847385 122 dbSNP
rs747027562 123 dbSNP
rs139860706 124 dbSNP
rs1405359390 139 dbSNP
rs1337275872 142 dbSNP
rs548207347 150 dbSNP
rs1176608556 152 dbSNP
rs1409083120 155 dbSNP
rs1018559698 157 dbSNP
rs780142833 164 dbSNP
rs187136014 166 dbSNP
rs960940091 173 dbSNP
rs1296657673 174 dbSNP
rs1411758600 174 dbSNP
rs781014720 174 dbSNP
rs1372963827 175 dbSNP
rs1220151799 179 dbSNP
rs758518592 180 dbSNP
rs1030257243 182 dbSNP
rs1234152982 192 dbSNP
rs181717309 199 dbSNP
rs1342178479 202 dbSNP
rs1206077921 221 dbSNP
rs903254713 222 dbSNP
rs1230815705 223 dbSNP
rs1191992197 226 dbSNP
rs1480128747 231 dbSNP
rs1161067155 246 dbSNP
rs1191529058 249 dbSNP
rs190061716 249 dbSNP
rs1012101752 251 dbSNP
rs1365862927 252 dbSNP
rs1183579172 257 dbSNP
rs1390775099 260 dbSNP
rs1482977790 263 dbSNP
rs1022062620 265 dbSNP
rs1168481668 267 dbSNP
rs989615251 269 dbSNP
rs770842168 273 dbSNP
rs893295019 275 dbSNP
rs777830819 287 dbSNP
rs937566860 291 dbSNP
rs1251498389 296 dbSNP
rs907461069 297 dbSNP
rs1045396017 299 dbSNP
rs768122915 300 dbSNP
rs373367995 302 dbSNP
rs918279144 304 dbSNP
rs561664058 308 dbSNP
rs1368053293 313 dbSNP
rs1008858071 315 dbSNP
rs1352596563 322 dbSNP
rs1270330803 323 dbSNP
rs1306432649 329 dbSNP
rs532467563 333 dbSNP
rs890379996 334 dbSNP
rs560246454 335 dbSNP
rs1466963551 336 dbSNP
rs540062715 349 dbSNP
rs941148276 352 dbSNP
rs996864362 359 dbSNP
rs1476381454 367 dbSNP
rs1348488126 371 dbSNP
rs911019223 375 dbSNP
rs1405075813 376 dbSNP
rs985705377 390 dbSNP
rs1038477314 397 dbSNP
rs955290495 405 dbSNP
rs1179092837 407 dbSNP
rs1348773623 417 dbSNP
rs1029554657 423 dbSNP
rs887319484 427 dbSNP
rs978004756 431 dbSNP
rs967339620 434 dbSNP
rs1160290476 435 dbSNP
rs1020273607 437 dbSNP
rs939484087 438 dbSNP
rs928228554 440 dbSNP
rs1011657385 457 dbSNP
rs980964447 461 dbSNP
rs374413603 462 dbSNP
rs957685807 466 dbSNP
rs1448554194 467 dbSNP
rs989276299 478 dbSNP
rs956658222 487 dbSNP
rs184028099 497 dbSNP
rs1002122444 505 dbSNP
rs1415914932 507 dbSNP
rs987309753 508 dbSNP
rs1219680462 509 dbSNP
rs954498119 515 dbSNP
rs1028934373 520 dbSNP
rs996077118 524 dbSNP
rs899860965 525 dbSNP
rs1414836228 536 dbSNP
rs562087538 537 dbSNP
rs1232260889 538 dbSNP
rs964059076 538 dbSNP
rs541806318 540 dbSNP
rs1288593974 555 dbSNP
rs1045995901 557 dbSNP
rs1352506683 559 dbSNP
rs994449565 561 dbSNP
rs1207937423 564 dbSNP
rs1283469929 566 dbSNP
rs1326782119 568 dbSNP
rs896823623 570 dbSNP
rs1038448831 581 dbSNP
rs1264987623 584 dbSNP
rs1274612542 589 dbSNP
rs1223992101 591 dbSNP
rs1366332485 594 dbSNP
rs1272507465 600 dbSNP
rs1255428636 607 dbSNP
rs1432476689 611 dbSNP
rs1183079627 615 dbSNP
rs1365771959 617 dbSNP
rs1468908858 619 dbSNP
rs1326717436 620 dbSNP
rs181084588 627 dbSNP
rs941086457 628 dbSNP
rs887196183 635 dbSNP
rs1373029409 645 dbSNP
rs910977715 647 dbSNP
rs545107438 655 dbSNP
rs1049559829 657 dbSNP
rs1439710966 658 dbSNP
rs1179234805 661 dbSNP
rs1345481389 662 dbSNP
rs189229723 664 dbSNP
rs922469802 671 dbSNP
rs1424553647 696 dbSNP
rs977968970 700 dbSNP
rs1278101101 702 dbSNP
rs879383300 704 dbSNP
rs1347166533 706 dbSNP
rs1189486154 712 dbSNP
rs1206027998 716 dbSNP
rs546041428 716 dbSNP
rs913194183 717 dbSNP
rs1181393154 718 dbSNP
rs1247620485 723 dbSNP
rs577479545 730 dbSNP
rs1455859915 731 dbSNP
rs948294631 732 dbSNP
rs914951513 740 dbSNP
rs554337760 745 dbSNP
rs957447772 746 dbSNP
rs934978065 775 dbSNP
rs1407806965 788 dbSNP
rs923698982 794 dbSNP
rs1371370386 807 dbSNP
rs1442845483 809 dbSNP
rs1210736129 815 dbSNP
rs1034866402 820 dbSNP
rs1311477958 822 dbSNP
rs765966084 839 dbSNP
rs151250368 841 dbSNP
rs1337572050 848 dbSNP
rs3508 851 dbSNP
rs1215885638 853 dbSNP
rs142431972 857 dbSNP
rs921750229 859 dbSNP
rs1192226204 871 dbSNP
rs974692758 873 dbSNP
rs537953599 889 dbSNP
rs963625184 891 dbSNP
rs994383986 894 dbSNP
rs897419281 901 dbSNP
rs1374254544 903 dbSNP
rs1474141250 913 dbSNP
rs1296479180 919 dbSNP
rs34258212 921 dbSNP
rs1038011815 923 dbSNP
rs1005650786 926 dbSNP
rs1462812343 927 dbSNP
rs568839507 928 dbSNP
rs889486550 929 dbSNP
rs1350540156 936 dbSNP
rs1049931891 939 dbSNP
rs552203247 940 dbSNP
rs1324701921 946 dbSNP
rs1226863829 947 dbSNP
rs1294134177 953 dbSNP
rs770393256 963 dbSNP
rs1449410218 969 dbSNP
rs1359150190 976 dbSNP
rs532394202 994 dbSNP
rs758429691 999 dbSNP
rs1272891674 1009 dbSNP
rs1042203785 1016 dbSNP
rs945258459 1023 dbSNP
rs566693824 1024 dbSNP
rs915154291 1049 dbSNP
rs1260273257 1053 dbSNP
rs990143235 1065 dbSNP
rs906743160 1070 dbSNP
rs957583084 1078 dbSNP
rs1244762394 1080 dbSNP
rs927344494 1082 dbSNP
rs1045205972 1090 dbSNP
rs1012377115 1099 dbSNP
rs894057517 1103 dbSNP
rs1206510296 1109 dbSNP
rs546769116 1116 dbSNP
rs980174527 1134 dbSNP
rs1454136523 1143 dbSNP
rs1290545117 1152 dbSNP
rs971474939 1155 dbSNP
rs1381688841 1167 dbSNP
rs1313613971 1170 dbSNP
rs1357467789 1171 dbSNP
rs1231641341 1172 dbSNP
rs777061615 1190 dbSNP
rs1317833169 1191 dbSNP
rs935009474 1200 dbSNP
rs1259479871 1205 dbSNP
rs1485848754 1215 dbSNP
rs1212257290 1216 dbSNP
rs1273229278 1220 dbSNP
rs1024446492 1225 dbSNP
rs775169126 1233 dbSNP
rs923584163 1235 dbSNP
rs1256439974 1236 dbSNP
rs576886306 1241 dbSNP
rs1161072503 1246 dbSNP
rs148803083 1257 dbSNP
rs1452906393 1272 dbSNP
rs1361077771 1276 dbSNP
rs1377281787 1282 dbSNP
rs1413027324 1284 dbSNP
rs961598597 1286 dbSNP
rs1312965641 1288 dbSNP
rs561154039 1289 dbSNP
rs1051541706 1290 dbSNP
rs1278548131 1296 dbSNP
rs1005831896 1297 dbSNP
rs1444944280 1304 dbSNP
rs1371252869 1307 dbSNP
rs780291063 1308 dbSNP
rs889443104 1315 dbSNP
rs933049664 1321 dbSNP
rs2422480 1326 dbSNP
rs564890037 1329 dbSNP
rs769340080 1330 dbSNP
rs963211677 1331 dbSNP
rs1387387632 1338 dbSNP
rs184768109 1346 dbSNP
rs772131816 1350 dbSNP
rs1480784525 1351 dbSNP
rs1178601033 1357 dbSNP
rs746015261 1358 dbSNP
rs1042172979 1360 dbSNP
rs531696276 1363 dbSNP
rs1396870480 1371 dbSNP
rs893662662 1376 dbSNP
rs1432937868 1389 dbSNP
rs1054099748 1401 dbSNP
rs1025590511 1405 dbSNP
rs1463687231 1406 dbSNP
rs1296674237 1408 dbSNP
rs1178908789 1411 dbSNP
rs1442174363 1415 dbSNP
rs937977138 1417 dbSNP
rs1369484628 1423 dbSNP
rs1472838763 1426 dbSNP
rs1003619769 1428 dbSNP
rs927247614 1433 dbSNP
rs1307600694 1439 dbSNP
rs866300845 1455 dbSNP
rs562505105 1457 dbSNP
rs1249271714 1467 dbSNP
rs745328360 1469 dbSNP
rs1202482707 1474 dbSNP
rs756079955 1477 dbSNP
rs111549843 1479 dbSNP
rs757185568 1483 dbSNP
rs950085758 1485 dbSNP
rs1023640938 1486 dbSNP
rs1012841546 1489 dbSNP
rs917357680 1490 dbSNP
rs1420235490 1491 dbSNP
rs1430396563 1494 dbSNP
rs893950746 1497 dbSNP
rs1054470041 1498 dbSNP
rs1462268745 1500 dbSNP
rs1328405873 1502 dbSNP
rs1392771173 1504 dbSNP
rs577464347 1509 dbSNP
rs1271288480 1516 dbSNP
rs1265699861 1521 dbSNP
rs1361966014 1527 dbSNP
rs961831942 1532 dbSNP
rs1220316716 1533 dbSNP
rs1321532735 1534 dbSNP
rs902215160 1543 dbSNP
rs1310947074 1553 dbSNP
rs539084170 1557 dbSNP
rs540425781 1565 dbSNP
rs1017138920 1567 dbSNP
rs1214068807 1572 dbSNP
rs540804358 1586 dbSNP
rs984778546 1593 dbSNP
rs139730569 1609 dbSNP
rs1028370124 1611 dbSNP
rs1288266565 1612 dbSNP
rs192569638 1613 dbSNP
rs537892127 1614 dbSNP
rs568983396 1616 dbSNP
rs997818513 1619 dbSNP
rs900906199 1620 dbSNP
rs1405151346 1626 dbSNP
rs900263713 1631 dbSNP
rs1020641685 1635 dbSNP
rs1286660824 1641 dbSNP
rs754870126 1643 dbSNP
rs941877752 1645 dbSNP
rs145967192 1647 dbSNP
rs1053664316 1657 dbSNP
rs1332397947 1658 dbSNP
rs187611537 1663 dbSNP
rs983806216 1676 dbSNP
rs1284832057 1678 dbSNP
rs1318715164 1679 dbSNP
rs937892478 1685 dbSNP
rs929219891 1686 dbSNP
rs1262519786 1688 dbSNP
rs566735984 1691 dbSNP
rs1486043962 1698 dbSNP
rs1411232897 1706 dbSNP
rs1179881985 1718 dbSNP
rs546544700 1732 dbSNP
rs530025561 1733 dbSNP
rs905122290 1734 dbSNP
rs1044396128 1737 dbSNP
rs1159545147 1739 dbSNP
rs950014827 1742 dbSNP
rs1242051064 1748 dbSNP
rs15443 1754 dbSNP
rs970673340 1754 dbSNP
rs1023693039 1755 dbSNP
rs567076013 1765 dbSNP
rs1338377789 1770 dbSNP
rs958477976 1775 dbSNP
rs547275057 1776 dbSNP
rs1307230209 1783 dbSNP
rs1000225583 1791 dbSNP
rs1285234311 1792 dbSNP
rs940162094 1794 dbSNP
rs1211045867 1795 dbSNP
rs1330206869 1812 dbSNP
rs550370714 1813 dbSNP
rs766203107 1821 dbSNP
rs984310634 1828 dbSNP
rs531686567 1831 dbSNP
rs1301986478 1832 dbSNP
rs1178557271 1836 dbSNP
rs1386436202 1852 dbSNP
rs1365823982 1853 dbSNP
rs1434767274 1859 dbSNP
rs1175028932 1862 dbSNP
rs900147559 1869 dbSNP
rs954410766 1889 dbSNP
rs1322796770 1890 dbSNP
rs1337252817 1890 dbSNP
rs921535888 1890 dbSNP
rs1457606216 1893 dbSNP
rs1387603945 1897 dbSNP
rs1156899079 1898 dbSNP
rs1467462844 1899 dbSNP
rs976995378 1902 dbSNP
rs12796203 1906 dbSNP
rs184676248 1912 dbSNP
rs12797909 1913 dbSNP
rs1196531995 1916 dbSNP
rs12796386 1919 dbSNP
rs12797906 1920 dbSNP
rs941780058 1924 dbSNP
rs1188781377 1926 dbSNP
rs1465650188 1927 dbSNP
rs77063826 1931 dbSNP
rs1375365233 1932 dbSNP
rs572729913 1932 dbSNP
rs1477418501 1934 dbSNP
rs1168119861 1937 dbSNP
rs1207392673 1937 dbSNP
rs1463834437 1938 dbSNP
rs199952011 1943 dbSNP
rs11039254 1944 dbSNP
rs1330534182 1944 dbSNP
rs1394969790 1944 dbSNP
rs199602931 1944 dbSNP
rs397774759 1944 dbSNP
rs5791762 1944 dbSNP
rs79826098 1944 dbSNP
rs201259828 1945 dbSNP
rs1228333527 1946 dbSNP
rs1272115880 1948 dbSNP
rs1347684064 1950 dbSNP
rs749966472 1962 dbSNP
rs1020611992 1964 dbSNP
rs1009728222 1969 dbSNP
rs1257082729 1970 dbSNP
rs1274159558 1972 dbSNP
rs1470113679 1975 dbSNP
rs887645244 1987 dbSNP
rs957820121 1988 dbSNP
rs1450531014 1992 dbSNP
rs1193327684 1996 dbSNP
rs1374410272 1998 dbSNP
rs1476606578 2003 dbSNP
rs77419618 2004 dbSNP
rs80211172 2006 dbSNP
rs1462829102 2007 dbSNP
rs765599285 2024 dbSNP
rs777591448 2030 dbSNP
rs1300154948 2033 dbSNP
rs1382826101 2039 dbSNP
rs762417673 2040 dbSNP
rs905049920 2041 dbSNP
rs1399566312 2050 dbSNP
rs1294153043 2061 dbSNP
rs916573450 2069 dbSNP
rs1046335360 2083 dbSNP
rs1397552544 2089 dbSNP
rs1265337151 2090 dbSNP
rs532437123 2113 dbSNP
rs1207429920 2114 dbSNP
rs958146256 2118 dbSNP
rs895820013 2120 dbSNP
rs1192405490 2121 dbSNP
rs1302162889 2124 dbSNP
rs1464150485 2129 dbSNP
rs1162492165 2133 dbSNP
rs1391429585 2137 dbSNP
rs1168869603 2150 dbSNP
rs1367702690 2153 dbSNP
rs1037038861 2158 dbSNP
rs1454213634 2158 dbSNP
rs1358644205 2160 dbSNP
rs1389961220 2166 dbSNP
rs1032801936 2167 dbSNP
rs1187130437 2170 dbSNP
rs1444481425 2200 dbSNP
rs978265834 2212 dbSNP
rs966841701 2215 dbSNP
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rs1030607856 2224 dbSNP
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rs1215342644 2236 dbSNP
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rs540541264 2252 dbSNP
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rs1378480093 2271 dbSNP
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rs997752075 2294 dbSNP
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rs969131311 2767 dbSNP
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rs1042413136 2913 dbSNP
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rs767744332 2996 dbSNP
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rs530408082 3173 dbSNP
rs999991162 3187 dbSNP
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rs754335211 3350 dbSNP
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rs983649567 5000 dbSNP
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rs1248686449 5035 dbSNP
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rs1036941555 5048 dbSNP
rs753021761 5061 dbSNP
rs939936802 5062 dbSNP
rs1356763734 5064 dbSNP
rs1296148702 5065 dbSNP
rs1272492949 5085 dbSNP
rs1231335017 5088 dbSNP
rs767892637 5096 dbSNP
rs1288360884 5107 dbSNP
rs1289192995 5107 dbSNP
rs1440819288 5108 dbSNP
rs1355352702 5121 dbSNP
rs1205456977 5125 dbSNP
rs1008564511 5134 dbSNP
rs1263627780 5138 dbSNP
rs1445147851 5147 dbSNP
rs1192399897 5148 dbSNP
rs917793388 5151 dbSNP
rs1446593424 5163 dbSNP
rs1161871266 5171 dbSNP
rs954470729 5172 dbSNP
rs1384788051 5179 dbSNP
rs1388935263 5185 dbSNP
rs145694200 5192 dbSNP
rs1160589907 5202 dbSNP
rs1383277952 5206 dbSNP
rs998718027 5213 dbSNP
rs1460285182 5216 dbSNP
rs1338033703 5220 dbSNP
rs1414820276 5229 dbSNP
rs1159293417 5236 dbSNP
rs1454161603 5237 dbSNP
rs1469667884 5237 dbSNP
rs1312309653 5244 dbSNP
rs540851882 5246 dbSNP
rs572821940 5247 dbSNP
rs1239328167 5248 dbSNP
rs927419627 5251 dbSNP
rs1201217615 5254 dbSNP
rs759866488 5260 dbSNP
rs1252070401 5261 dbSNP
rs1462695083 5267 dbSNP
rs1181785531 5276 dbSNP
rs1242613101 5278 dbSNP
rs1419833296 5284 dbSNP
rs36060230 5289 dbSNP
rs980576236 5289 dbSNP
rs1362414160 5292 dbSNP
rs537465879 5292 dbSNP
rs895107920 5298 dbSNP
rs1408879037 5305 dbSNP
rs1468733844 5319 dbSNP
rs572172045 5330 dbSNP
rs555622363 5335 dbSNP
rs939387144 5338 dbSNP
rs1466242387 5345 dbSNP
rs914737414 5362 dbSNP
rs1400893754 5363 dbSNP
rs1222747882 5364 dbSNP
rs776093235 5367 dbSNP
rs1308782658 5371 dbSNP
rs928087055 5383 dbSNP
rs1048299295 5393 dbSNP
rs1227613017 5394 dbSNP
rs11546837 5396 dbSNP
rs956280113 5397 dbSNP
rs929475514 5398 dbSNP
rs1020254474 5399 dbSNP
rs1276269878 5400 dbSNP
rs1201703355 5408 dbSNP
rs920792635 5419 dbSNP
rs536704719 5420 dbSNP
rs1007909730 5422 dbSNP
rs1248741699 5424 dbSNP
rs1233439422 5428 dbSNP
rs973625988 5428 dbSNP
rs964936408 5435 dbSNP
rs1028099748 5437 dbSNP
rs75336726 5447 dbSNP
rs1325721383 5453 dbSNP
rs751793248 5456 dbSNP
rs954589992 5457 dbSNP
rs1319534958 5472 dbSNP
rs1400217982 5477 dbSNP
rs557390114 5481 dbSNP
rs977603371 5484 dbSNP
rs1300554589 5485 dbSNP
rs1802814 5490 dbSNP
rs1003968073 5496 dbSNP
rs1229639836 5497 dbSNP
rs766575306 5502 dbSNP
rs1021470255 5504 dbSNP
rs1482814698 5509 dbSNP
rs1382827060 5511 dbSNP
rs1174539036 5518 dbSNP
rs1012804834 5523 dbSNP
rs537472388 5528 dbSNP
rs763058410 5529 dbSNP
rs12054 5533 dbSNP
rs1263112546 5535 dbSNP
rs1003525625 5543 dbSNP
rs1171821287 5549 dbSNP
rs1191586263 5550 dbSNP
rs1163897520 5556 dbSNP
rs568447899 5556 dbSNP
rs571834471 5556 dbSNP
rs1451064079 5558 dbSNP
rs1292749687 5573 dbSNP
rs1362521177 5574 dbSNP
rs1242681142 5589 dbSNP
rs938719415 5604 dbSNP
rs1047797397 5606 dbSNP
rs929422025 5607 dbSNP
rs927273767 5610 dbSNP
rs899294276 5611 dbSNP
rs1213795291 5612 dbSNP
rs184537598 5622 dbSNP
rs1346786710 5627 dbSNP
rs1300771481 5629 dbSNP
rs1294278638 5642 dbSNP
rs1232626398 5645 dbSNP
rs1367735697 5649 dbSNP
rs1271320288 5650 dbSNP
rs1430556783 5651 dbSNP
rs947371267 5654 dbSNP
rs376848481 5655 dbSNP
rs1062801 5656 dbSNP
rs397790422 5657 dbSNP
rs1435409345 5659 dbSNP
rs1062802 5668 dbSNP
rs1414853167 5668 dbSNP
rs555328608 5668 dbSNP
rs55702363 5668 dbSNP
rs1183798277 5669 dbSNP
rs1386653855 5670 dbSNP
rs1403275519 5672 dbSNP
rs1345581516 5697 dbSNP
rs1037843737 5700 dbSNP
rs914614689 5702 dbSNP
rs943596618 5719 dbSNP
rs910823538 5720 dbSNP
rs987707028 5723 dbSNP
rs932989816 5725 dbSNP
rs924306505 5740 dbSNP
rs1380807797 5766 dbSNP
rs1171984758 5774 dbSNP
rs1431420667 5781 dbSNP
rs977158845 5795 dbSNP
rs1214228969 5804 dbSNP
rs1203702692 5813 dbSNP
rs1268105430 5813 dbSNP
rs989052209 5813 dbSNP
rs934927639 5819 dbSNP
rs968880080 5821 dbSNP
rs1180985571 5822 dbSNP
rs555880730 5830 dbSNP
rs1420697582 5837 dbSNP
rs1156835900 5838 dbSNP
rs1387758957 5843 dbSNP
rs1332074210 5844 dbSNP
rs991337982 5851 dbSNP
rs953789312 5853 dbSNP
rs528806821 5855 dbSNP
rs566215535 5856 dbSNP
rs1035590662 5864 dbSNP
rs1222376337 5868 dbSNP
rs773436905 5872 dbSNP
rs1324811010 5874 dbSNP
rs1485048137 5875 dbSNP
rs906529000 5876 dbSNP
rs182103465 5886 dbSNP
rs528944422 5887 dbSNP
rs1233153405 5889 dbSNP
rs1481425634 5896 dbSNP
rs576060036 5901 dbSNP
rs1410963122 5902 dbSNP
rs1037812639 5905 dbSNP
rs1178578786 5906 dbSNP
rs1480713548 5906 dbSNP
rs1423109523 5911 dbSNP
rs1414023208 5933 dbSNP
rs1329648513 5934 dbSNP
rs1356455637 5936 dbSNP
rs1408235310 5942 dbSNP
rs1004068008 5954 dbSNP
rs1225884584 5956 dbSNP
rs896411962 5956 dbSNP
rs796168333 5964 dbSNP
rs776405939 5966 dbSNP
rs775604224 5972 dbSNP
rs889312043 5976 dbSNP
rs1273140973 5977 dbSNP
rs1002454451 5985 dbSNP
rs1202609404 5988 dbSNP
rs1360566731 5990 dbSNP
rs374301147 5999 dbSNP
rs933570447 6001 dbSNP
rs1244856465 6002 dbSNP
rs1044870380 6008 dbSNP
rs947484726 6011 dbSNP
rs1421756636 6016 dbSNP
rs1428053860 6027 dbSNP
rs35975573 6027 dbSNP
rs112866503 6029 dbSNP
rs977503565 6032 dbSNP
rs1044269 6042 dbSNP
rs771915678 6045 dbSNP
rs1322016440 6052 dbSNP
rs991264219 6059 dbSNP
rs1053131180 6074 dbSNP
rs1270216760 6085 dbSNP
rs1366818008 6090 dbSNP
rs934873660 6099 dbSNP
rs1273526842 6100 dbSNP
rs201455895 6100 dbSNP
rs549342993 6105 dbSNP
rs539183522 6106 dbSNP
rs986949781 6122 dbSNP
rs563940296 6124 dbSNP
rs928489367 6126 dbSNP
rs1193882344 6135 dbSNP
rs1243916310 6136 dbSNP
rs1447778881 6138 dbSNP
rs1188143066 6141 dbSNP
rs932811656 6156 dbSNP
rs1390486105 6158 dbSNP
rs746899080 6158 dbSNP
rs921477529 6158 dbSNP
rs1411839224 6160 dbSNP
rs1355324134 6162 dbSNP
rs1401784984 6169 dbSNP
rs778563891 6176 dbSNP
rs1407972917 6180 dbSNP
rs190805366 6184 dbSNP
rs74768328 6188 dbSNP
rs1165504869 6189 dbSNP
rs1015190774 6195 dbSNP
rs1246551722 6205 dbSNP
rs149776003 6213 dbSNP
rs1355463819 6215 dbSNP
rs1254691838 6220 dbSNP
rs770505350 6223 dbSNP
rs112046730 6235 dbSNP
rs1208147684 6237 dbSNP
rs963372122 6243 dbSNP
rs1480786443 6248 dbSNP
rs1243832851 6253 dbSNP
rs1231947082 6254 dbSNP
rs1204312512 6259 dbSNP
rs1368221603 6273 dbSNP
rs1035350520 6274 dbSNP
rs1160672123 6282 dbSNP
rs777601481 6287 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 10658.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gcugcaccccgccucgcAGACCUUc 5'
                           ||||||| 
Target 5' auuaccuaaauuauaucUCUGGAAa 3'
 		8 - 32
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 10658.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gcugcaccccgccucgcAGACCUUc 5'
                           ||||||| 
Target 5' auuaccuaaauuauaucUCUGGAAa 3'
 		8 - 32
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000395290.2 | 3UTR | AAUAUUUAUUACCUAAAUUAUAUCUCUGGAAAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000395290.2 | 3UTR | AAUAUUUAUUACCUAAAUUAUAUCUCUGGAAAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
126 hsa-miR-3180-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT088042 UBXN2A UBX domain protein 2A 2 2
MIRT092741 SETD5 SET domain containing 5 2 4
MIRT123870 FZD6 frizzled class receptor 6 2 2
MIRT134588 GXYLT1 glucoside xylosyltransferase 1 2 2
MIRT174919 RNF38 ring finger protein 38 2 2
MIRT232088 CCSAP centriole, cilia and spindle associated protein 2 2
MIRT257503 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT332968 CELF1 CUGBP Elav-like family member 1 2 4
MIRT441902 SEPN1 selenoprotein N 2 2
MIRT443231 ALG8 ALG8, alpha-1,3-glucosyltransferase 2 2
MIRT446243 ELP2 elongator acetyltransferase complex subunit 2 2 2
MIRT447999 GPR63 G protein-coupled receptor 63 2 2
MIRT458203 FOXL2 forkhead box L2 2 2
MIRT461680 ZNF426 zinc finger protein 426 2 2
MIRT462650 HMOX1 heme oxygenase 1 2 4
MIRT462850 UBR7 ubiquitin protein ligase E3 component n-recognin 7 (putative) 2 2
MIRT464366 URM1 ubiquitin related modifier 1 2 2
MIRT466852 STX6 syntaxin 6 2 2
MIRT468228 SGK1 serum/glucocorticoid regulated kinase 1 2 2
MIRT472037 NPAT nuclear protein, coactivator of histone transcription 2 2
MIRT481535 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT482639 RPL18A ribosomal protein L18a 2 2
MIRT498085 SEMA7A semaphorin 7A (John Milton Hagen blood group) 2 2
MIRT498273 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT506560 MNX1 motor neuron and pancreas homeobox 1 2 4
MIRT507153 GATA6 GATA binding protein 6 2 4
MIRT507447 EIF6 eukaryotic translation initiation factor 6 2 2
MIRT507565 DEK DEK proto-oncogene 2 2
MIRT519629 ZNF772 zinc finger protein 772 2 4
MIRT527689 IL17REL interleukin 17 receptor E like 2 2
MIRT528200 NELFE negative elongation factor complex member E 2 2
MIRT528528 CYP2C19 cytochrome P450 family 2 subfamily C member 19 2 4
MIRT528871 ATF3 activating transcription factor 3 2 2
MIRT529121 HOMEZ homeobox and leucine zipper encoding 2 2
MIRT529479 TPD52L3 tumor protein D52 like 3 2 2
MIRT530757 ZNF582 zinc finger protein 582 2 2
MIRT530897 C9orf3 chromosome 9 open reading frame 3 2 2
MIRT531495 NONO non-POU domain containing octamer binding 2 2
MIRT531927 IL12RB2 interleukin 12 receptor subunit beta 2 2 2
MIRT532343 PLEK pleckstrin 2 2
MIRT532817 ZNF827 zinc finger protein 827 2 2
MIRT533516 TRIM13 tripartite motif containing 13 2 2
MIRT534275 SLC12A7 solute carrier family 12 member 7 2 2
MIRT534480 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT537351 FJX1 four jointed box 1 2 2
MIRT538799 C2CD5 C2 calcium dependent domain containing 5 2 2
MIRT538842 BTG1 BTG anti-proliferation factor 1 2 2
MIRT539266 ANKRD28 ankyrin repeat domain 28 2 2
MIRT543401 ANAPC13 anaphase promoting complex subunit 13 2 2
MIRT552637 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT556033 MXD1 MAX dimerization protein 1 2 2
MIRT556449 LMNB2 lamin B2 2 4
MIRT562448 CSDE1 cold shock domain containing E1 2 2
MIRT567281 HNRNPL heterogeneous nuclear ribonucleoprotein L 2 2
MIRT574050 PROSC pyridoxal phosphate binding protein 2 2
MIRT575658 Map1b microtubule-associated protein 1B 2 2
MIRT606823 APBB2 amyloid beta precursor protein binding family B member 2 2 2
MIRT609583 GPM6B glycoprotein M6B 2 2
MIRT609678 TMEM213 transmembrane protein 213 2 2
MIRT611221 ZNF274 zinc finger protein 274 2 2
MIRT612577 SYNGAP1 synaptic Ras GTPase activating protein 1 2 4
MIRT613583 MDGA2 MAM domain containing glycosylphosphatidylinositol anchor 2 2 2
MIRT614394 C11orf45 chromosome 11 open reading frame 45 2 2
MIRT615558 JPH2 junctophilin 2 2 2
MIRT615850 RASGRP1 RAS guanyl releasing protein 1 2 2
MIRT615906 C1orf27 chromosome 1 open reading frame 27 2 2
MIRT615932 MAP1LC3B microtubule associated protein 1 light chain 3 beta 2 2
MIRT617632 RXRA retinoid X receptor alpha 2 2
MIRT618745 CNNM3 cyclin and CBS domain divalent metal cation transport mediator 3 2 2
MIRT622073 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT624390 CD3D CD3d molecule 2 2
MIRT634656 GRIN2B glutamate ionotropic receptor NMDA type subunit 2B 2 2
MIRT636717 AQR aquarius intron-binding spliceosomal factor 2 2
MIRT638033 SHPK sedoheptulokinase 2 2
MIRT638543 KIAA1549 KIAA1549 2 2
MIRT638754 EPHA4 EPH receptor A4 2 2
MIRT639223 IMMP2L inner mitochondrial membrane peptidase subunit 2 2 2
MIRT641774 ZFP91 ZFP91 zinc finger protein 2 2
MIRT643672 CEP78 centrosomal protein 78 2 2
MIRT645851 AFF2 AF4/FMR2 family member 2 2 2
MIRT646021 S100A7A S100 calcium binding protein A7A 2 2
MIRT646071 NDUFS2 NADH:ubiquinone oxidoreductase core subunit S2 2 2
MIRT646730 FADS1 fatty acid desaturase 1 2 2
MIRT646742 MUC4 mucin 4, cell surface associated 2 2
MIRT647563 ZNF660 zinc finger protein 660 2 2
MIRT648539 TMEM169 transmembrane protein 169 2 2
MIRT650852 UNC13D unc-13 homolog D 2 2
MIRT650872 PPP1R15A protein phosphatase 1 regulatory subunit 15A 2 2
MIRT652345 TMOD3 tropomodulin 3 2 2
MIRT653451 SLC6A17 solute carrier family 6 member 17 2 2
MIRT654750 PRKCB protein kinase C beta 2 2
MIRT655569 OXSR1 oxidative stress responsive 1 2 2
MIRT656547 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT657212 IGF1R insulin like growth factor 1 receptor 2 2
MIRT657740 GNG12 G protein subunit gamma 12 2 2
MIRT659225 CXorf23 BCLAF1 and THRAP3 family member 3 2 2
MIRT659272 CTNNBIP1 catenin beta interacting protein 1 2 2
MIRT660822 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT666123 SRCIN1 SRC kinase signaling inhibitor 1 2 2
MIRT666608 REEP2 receptor accessory protein 2 2 2
MIRT668974 CLSTN2 calsyntenin 2 2 2
MIRT678890 TTLL12 tubulin tyrosine ligase like 12 2 2
MIRT683998 FOLR1 folate receptor 1 2 2
MIRT685672 PSMB7 proteasome subunit beta 7 2 2
MIRT689095 ZBTB25 zinc finger and BTB domain containing 25 2 2
MIRT690645 RPF2 ribosome production factor 2 homolog 2 2
MIRT697740 USP5 ubiquitin specific peptidase 5 2 2
MIRT698823 STARD7 StAR related lipid transfer domain containing 7 2 2
MIRT699886 RUNX1 runt related transcription factor 1 2 2
MIRT700010 RPP25 ribonuclease P and MRP subunit p25 2 2
MIRT706001 ABCC1 ATP binding cassette subfamily C member 1 2 2
MIRT708394 XKR7 XK related 7 2 2
MIRT708517 TOP2B DNA topoisomerase II beta 2 2
MIRT709215 PARD3B par-3 family cell polarity regulator beta 2 2
MIRT710154 MTRF1L mitochondrial translational release factor 1 like 2 2
MIRT711069 NLGN2 neuroligin 2 2 2
MIRT714631 TM4SF18 transmembrane 4 L six family member 18 2 2
MIRT715418 SPOPL speckle type BTB/POZ protein like 2 2
MIRT716612 RBM18 RNA binding motif protein 18 2 2
MIRT718658 HNF4A hepatocyte nuclear factor 4 alpha 2 2
MIRT718929 TRIM66 tripartite motif containing 66 2 2
MIRT720637 ELF5 E74 like ETS transcription factor 5 2 2
MIRT720782 PRKRIP1 PRKR interacting protein 1 2 2
MIRT721285 TRABD2A TraB domain containing 2A 2 2
MIRT721337 LIF LIF, interleukin 6 family cytokine 2 2
MIRT722891 LRRC20 leucine rich repeat containing 20 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-3180-5p Ginsenoside Rh2 NULL 119307 Microarray NSCLC cell line A549 23152132 2013 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3180 Fluorouracil 3385 NSC19893 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-miR-3180 Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-miR-3180 Dabrafenib 44462760 NSC764134 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-3180 Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-3180 Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-3180 Fulvestrant 17756771 NSC719276 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-3180 Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-3180 Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (MGC803)
hsa-miR-3180 Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-3180 Doxorubicin 31703 NSC123127 approved resistant cell line (HS578T)
hsa-miR-3180 Tamoxifen 2733525 NSC180973 approved sensitive cell line (LCC2)
hsa-miR-3180 Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-3180 Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-3180 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3180-5p Paclitaxel 36314 NSC125973 approved sensitive High Non-Small Cell Lung Cancer cell line (H460)
hsa-miR-3180-5p Docetaxel 148124 NSC628503 approved resistant High Breast Cancer cell line (MDA-MB-231, MCF-7)
hsa-miR-3180-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-3180-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-3180-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-3180-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3180-5p Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-3180-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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